Citrus Sinensis ID: 024496

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------
Protein Sequence
MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQVNL
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccccHHHHccccccccccccEEccccccEEEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccEEEcEEEccccccccEEcccccEEEcccccccccEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHcccccEEEEccccccHHHHHHccccEEEcccccccccccEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEccHHHHHHHccccccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEcccEEEEccccccccEcEEEEEHHHEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHccccccccEEEEc
Coil and Loop (DISEMBL)
mnnksaspkagkvIRCKAaicripgkplvieeieveppkAWEIRIKILCTSlchsdvtfwksstdlpklplpvifgheAVGVVESVGEYVEEVKerdlvlpifhrdcgecrdckssksntcskfgrgyrpnmprdgtsRFRELKGDvihhflnissfteysvVDIThvvkitphipLGIACLLscgvstgvGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRaskiigvdinpekfeigkkfgitdfinpatcgdktvsqvnl
Flexible Loop (DISEMBL)
mnnksaspkagkvirckaaicripgkplvieeIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIfhrdcgecrdckssksntcskfgrgyrpnmprdgTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNraskiigvdinpeKFEIGKKFGITDfinpatcgdktvsqvnl
Low Complexity Region (SEG)
MNNKSASPKAGKVIRCKAAICRIPGKPLvieeieveppKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFgheavgvvesvgeyveevkeRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFglgavglavaegaRLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQVNL
Disordered region (IsUnstruct)
***********KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDC**************************FRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCG*********
Disordered Region (DISOPRED)
**************RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQVNL
Disordered Region (DISEMBL)
***********KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGD********
Disordered Region (DISPRO)
**********GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQVNL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQVNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	267	2.2.26 [Sep-21-2011]
Q9SK87	386	Alcohol dehydrogenase-lik	yes	no	0.970	0.670	0.662	5e-95
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.988	0.680	0.635	3e-93
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.951	0.652	0.644	1e-90
Q9FH04	390	Alcohol dehydrogenase-lik	no	no	0.981	0.671	0.618	6e-88
P25141	382	Alcohol dehydrogenase 1 O	N/A	no	0.962	0.672	0.551	8e-72
Q8VZ49	380	Alcohol dehydrogenase-lik	no	no	0.943	0.663	0.542	3e-70
P48977	380	Alcohol dehydrogenase OS=	N/A	no	0.917	0.644	0.558	1e-69
P14219	379	Alcohol dehydrogenase 1 O	N/A	no	0.906	0.638	0.560	1e-68
P13603	380	Alcohol dehydrogenase 1 O	N/A	no	0.955	0.671	0.538	2e-68
P00333	379	Alcohol dehydrogenase 1 O	N/A	no	0.906	0.638	0.552	4e-68

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  347 bits (890), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 209/261 (80%), Gaps = 2/261 (0%)

Query: 6   ASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD 65
           AS   GK IRCKAAI R  G+PLVIEEI+V+PP+A+E+RIKILCTSLCH+DVTFWK  + 
Sbjct: 4   ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSG 63

Query: 66  LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
            P    P I GHEAVGVVES+GE V+  K+ D+VLP+FH  C EC++C S KSN C+K+ 
Sbjct: 64  -PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 126 RGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
             Y  N  R G TSRF++ +G+ IHHF+ +SSFTEY+VVDI H+VKI+P IP+ IA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           C V+TG+GAAWKVA VE GSTV IFGLGAVGLAVAEG RL  A+KIIGVD+NP KFEIGK
Sbjct: 183 CSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGK 242

Query: 245 KFGITDFINPATCGDKTVSQV 265
           +FGITDF+NPA CG+KT+S+V
Sbjct: 243 RFGITDFVNPALCGEKTISEV 263

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  341 bits (875), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 169/266 (63%), Positives = 206/266 (77%), Gaps = 2/266 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M+    S   GK I CKAAICR  G+ LVIE+I V+PP+A+E+RIKILCTSLCH+D+TFW
Sbjct: 1   MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K S   P    P I GHEAVGVVES+GE V+  K+ D+VLP+FH  C EC+DCKSSK+N 
Sbjct: 61  KLSFG-PISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNW 119

Query: 121 CSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
           C ++   +  N  R G  SRF++  G+VIHHFL +SSF+EY+VVDI H+VKI+P IP+  
Sbjct: 120 CDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDK 179

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
           A LLSCGVSTG+GAAWKVA VE GST+AIFGLGAVGLAVAEGARL  A+KIIG+D N +K
Sbjct: 180 AALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDK 239

Query: 240 FEIGKKFGITDFINPATCGDKTVSQV 265
           FE+GKKFG TDFINP  CG+K +S+V
Sbjct: 240 FELGKKFGFTDFINPTLCGEKKISEV 265

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  332 bits (852), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 165/256 (64%), Positives = 202/256 (78%), Gaps = 2/256 (0%)

Query: 11  GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GK IRCKAA+ R PG+ LVIEEI V+PP+A+E+RIKI+CTSLCH+DV+F K  +  P   
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSG-PLAR 70

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
            P I GHEAVGV+ES+GE+V   ++ D+VLP+FH  C ECRDCKSSKSN C++F   +  
Sbjct: 71  FPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLS 130

Query: 131 NMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
           N  R G TSRF++  G+ I+HFL +SSF+EY+VVDI H+VKI+P IP+  A LLSCGVST
Sbjct: 131 NTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVST 190

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G+GAAWKVA VE GSTVA+FGLGAVGLAV EGARL  A KIIGVD+NPEKFE+GKKFG T
Sbjct: 191 GIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFT 250

Query: 250 DFINPATCGDKTVSQV 265
           DFIN   CG+  +S+V
Sbjct: 251 DFINSTLCGENKISEV 266

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  323 bits (829), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 164/265 (61%), Positives = 201/265 (75%), Gaps = 3/265 (1%)

Query: 2   NNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK 61
           N+ S +  + K IRCKAA+ R  G+PLV+EEI V PP+ +E+RI+I+CT+LCHSDVTFWK
Sbjct: 5   NSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWK 64

Query: 62  SSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC 121
               +P    P I GHEA+GVVESVGE V+EV E D VLP F  DCG+C DCKS KSN C
Sbjct: 65  --LQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLC 122

Query: 122 SKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
           SKF     P MPR D +SRF +L G+ + HFLN+SSF+EY+V+D+ +VVKI   IP   A
Sbjct: 123 SKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRA 182

Query: 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF 240
           CLLSCGVSTGVGAAW+ A VE GSTV IFGLG++GLAVAEGARL  AS+IIGVDINP KF
Sbjct: 183 CLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKF 242

Query: 241 EIGKKFGITDFINPATCGDKTVSQV 265
           ++G+KFG+T+F+N  TC    VS+V
Sbjct: 243 QVGQKFGVTEFVNSMTCEKNRVSEV 267

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1

 Score =  270 bits (690), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 144/261 (55%), Positives = 178/261 (68%), Gaps = 4/261 (1%)

Query: 6   ASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD 65
           +S  AG+VIRCKAA+    GKPLVIEE+EV PP+  E+R+KIL TSLCH+DV FW++   
Sbjct: 2   SSNTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQ 61

Query: 66  LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
            P  P   IFGHEA G+VESVGE V ++K  D VLP+F  +C +CR CKS +SN C    
Sbjct: 62  TPLFPR--IFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLR 119

Query: 126 -RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
               R  M  DG +RF +  G  I+HF+  S+F+EY+V     V KI P  PL   C+LS
Sbjct: 120 INTDRGVMIHDGQTRFSK-DGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLS 178

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           CG+STG+GA   VA    GSTVAIFGLGAVGLA AEGAR+  AS+IIGVD+NP +F   K
Sbjct: 179 CGISTGLGATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAK 238

Query: 245 KFGITDFINPATCGDKTVSQV 265
           KFG+T+F+NP   GDK V QV
Sbjct: 239 KFGVTEFVNPKDHGDKPVQQV 259

This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8VZ49|ADHL4_ARATH Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1

 Score =  265 bits (677), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 139/256 (54%), Positives = 182/256 (71%), Gaps = 4/256 (1%)

Query: 11  GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GKVI CKAA+    G+PLV+E+++V+PP+  E+RI+IL TS+CH+D++ WK   +  +  
Sbjct: 5   GKVITCKAAVAWGAGEPLVMEDVKVDPPQRLEVRIRILFTSICHTDLSAWKGENEAQR-A 63

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG-YR 129
            P I GHEA G+VESVGE VEE+   D VLPIF  +CG+CR CK   +N C +F     +
Sbjct: 64  YPRILGHEAAGIVESVGEGVEEMMAGDHVLPIFTGECGDCRVCKRDGANLCERFRVDPMK 123

Query: 130 PNMPRDGTSRFRELKGDV-IHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS 188
             M  DG +RF   K +  I+HFLN S+F+EY+V+D   V+K+ P  PL    LLSCGVS
Sbjct: 124 KVMVTDGKTRFFTSKDNKPIYHFLNTSTFSEYTVIDSACVLKVDPLFPLEKISLLSCGVS 183

Query: 189 TGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           TGVGAAW VA ++  STVAIFGLGAVGLAVAEGAR   ASKIIG+DINP+KF++G++ GI
Sbjct: 184 TGVGAAWNVADIQPASTVAIFGLGAVGLAVAEGARARGASKIIGIDINPDKFQLGREAGI 243

Query: 249 TDFINPATCGDKTVSQ 264
           ++FINP    DK V +
Sbjct: 244 SEFINPKE-SDKAVHE 258

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P48977|ADH_MALDO Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 139/249 (55%), Positives = 177/249 (71%), Gaps = 4/249 (1%)

Query: 7   SPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL 66
           S  AG+VIRC+AA+    GKPLVIEE+EV PP+A E+RIKIL TSLCH+DV FW++    
Sbjct: 2   SNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQN 61

Query: 67  PKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG- 125
           P  P   I+GHEA G+VESVGE V ++K  D VLP+F  +C +C  CKS +SN C     
Sbjct: 62  PLFPR--IYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRI 119

Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
              R  M  DG SRF  +KG  I+HF+  S+F+EY+VV +  + KI P  PL   CLLSC
Sbjct: 120 NTDRGVMLSDGKSRF-SIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSC 178

Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
           G+STG+GA   VA  + GSTVA+FGLGAVGLA AEGARL+ AS+IIGVD++ ++FE  KK
Sbjct: 179 GISTGLGATLNVAKPKKGSTVAVFGLGAVGLAAAEGARLSGASRIIGVDLHSDRFEEAKK 238

Query: 246 FGITDFINP 254
           FG+T+F+NP
Sbjct: 239 FGVTEFVNP 247

Malus domestica (taxid: 3750)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P14219|ADH1_PENAM Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1

 Score =  259 bits (662), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 172/246 (69%), Gaps = 4/246 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+    GKPL IEE+EV PP+A E+R+KIL TSLCH+DV FW++    P  
Sbjct: 4   AGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVF 63

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGY 128
           P   IFGHEA G++ESVGE V +V   D VLP+F  +C EC  CKS++SN C        
Sbjct: 64  PR--IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTV 121

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS 188
           R  M  DG SRF  + G  I+HF+  S+F+EY+V+ +  V KI P  PL   C+LSCG+S
Sbjct: 122 RGVMIGDGKSRF-SINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGIS 180

Query: 189 TGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           TG+GA+  VA    GSTVAIFGLGAVGLA AEGAR+  AS+IIGVD+NP +FE  KKFG 
Sbjct: 181 TGLGASINVAKPPKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEAKKFGC 240

Query: 249 TDFINP 254
           T+F+NP
Sbjct: 241 TEFVNP 246

Pennisetum americanum (taxid: 4543)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P13603|ADH1_TRIRP Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1

 Score =  259 bits (661), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 140/260 (53%), Positives = 177/260 (68%), Gaps = 5/260 (1%)

Query: 7   SPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL 66
           S  AG+VI+C+AA+    GKPLVIEE+EV PP+A E+R+KIL TSLCH+DV FW++    
Sbjct: 2   SNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQT 61

Query: 67  PKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG- 125
           P  P   IFGHEA G+VESVGE V  +K  D  LP+F  +CGEC  CKS +SN C+    
Sbjct: 62  PLFPR--IFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRI 119

Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
              R  M  D  SRF  +KG  +HHF+  S+F+EY+VV    V KI P  PL   C+LSC
Sbjct: 120 NTDRGVMINDNKSRF-SIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSC 178

Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
           G+ TG+GA   VA  + GS+VAIFGLGAVGLA AEGAR++ AS+IIGVD+   +FE+ KK
Sbjct: 179 GICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARMSGASRIIGVDLVSSRFELAKK 238

Query: 246 FGITDFINPATCGDKTVSQV 265
           FG+ +F+NP    DK V QV
Sbjct: 239 FGVNEFVNPKD-HDKPVQQV 257

Trifolium repens (taxid: 3899)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|P00333|ADH1_MAIZE Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1

 Score =  258 bits (658), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 136/246 (55%), Positives = 171/246 (69%), Gaps = 4/246 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+    GKPL IEE+EV PP+A E+R+KIL TSLCH+DV FW++    P  
Sbjct: 4   AGKVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVF 63

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGY 128
           P   IFGHEA G++ESVGE V +V   D VLP+F  +C EC  CKS++SN C        
Sbjct: 64  PR--IFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTD 121

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS 188
           R  M  DG SRF  + G  I+HF+  S+F+EY+V+ +  V KI P  PL   C+LSCG S
Sbjct: 122 RGVMIADGKSRF-SINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYS 180

Query: 189 TGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           TG+GA+  VA    GSTVA+FGLGAVGLA AEGAR+  AS+IIGVD+NP +FE  +KFG 
Sbjct: 181 TGLGASINVAKPPKGSTVAVFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFEEARKFGC 240

Query: 249 TDFINP 254
           T+F+NP
Sbjct: 241 TEFVNP 246

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
359492460	408	PREDICTED: alcohol dehydrogenase-like 1	0.988	0.647	0.724	1e-106
302141994	387	unnamed protein product [Vitis vinifera]	0.988	0.682	0.724	1e-106
15219884	386	alcohol dehydrogenase-like 2 [Arabidopsi	0.970	0.670	0.662	3e-93
297845266	388	hypothetical protein ARALYDRAFT_472484 [	0.988	0.680	0.642	4e-93
297845264	388	hypothetical protein ARALYDRAFT_472482 [	0.988	0.680	0.646	1e-92
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.985	0.679	0.664	1e-92
357465103	391	Alcohol dehydrogenase-like protein [Medi	0.955	0.652	0.703	2e-92
15219882	388	alcohol dehydrogenase-like 1 [Arabidopsi	0.988	0.680	0.635	2e-91
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.981	0.675	0.662	2e-91
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.966	0.671	0.657	2e-90

>gi|359492460|ref|XP_002285748.2| PREDICTED: alcohol dehydrogenase-like 1 [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/265 (72%), Positives = 218/265 (82%), Gaps = 1/265 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M  K++S  AGK I CKAAIC+ PG+ LVIEEIEV PP+AWEIRIKILCTSLCH+DVTFW
Sbjct: 22  MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 81

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K + D P+   P I GHEAVGVVESVGE+VEEVKE DLV+P+F   C ECRDC S+KSN 
Sbjct: 82  KMN-DGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNL 140

Query: 121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
           C+KFG  +   MPRDG+SRFR +KG+V+HHFL +SSF EY+VVDI HVV++   IP   A
Sbjct: 141 CTKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKA 200

Query: 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF 240
           CLLSCGVSTG+GAAWKVA VE GSTVAIFGLGAVGLAVAEGARL  ASKIIGVD+NPEKF
Sbjct: 201 CLLSCGVSTGIGAAWKVAEVEEGSTVAIFGLGAVGLAVAEGARLRGASKIIGVDLNPEKF 260

Query: 241 EIGKKFGITDFINPATCGDKTVSQV 265
           EIGKKFG+T FINP  CG+K VSQV
Sbjct: 261 EIGKKFGVTHFINPTACGEKAVSQV 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141994|emb|CBI19197.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1001), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/265 (72%), Positives = 218/265 (82%), Gaps = 1/265 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M  K++S  AGK I CKAAIC+ PG+ LVIEEIEV PP+AWEIRIKILCTSLCH+DVTFW
Sbjct: 1   MEKKNSSETAGKAITCKAAICKEPGEALVIEEIEVAPPEAWEIRIKILCTSLCHTDVTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K + D P+   P I GHEAVGVVESVGE+VEEVKE DLV+P+F   C ECRDC S+KSN 
Sbjct: 61  KMN-DGPERSFPKILGHEAVGVVESVGEHVEEVKEGDLVVPVFLPSCKECRDCTSTKSNL 119

Query: 121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
           C+KFG  +   MPRDG+SRFR +KG+V+HHFL +SSF EY+VVDI HVV++   IP   A
Sbjct: 120 CTKFGSKFYQGMPRDGSSRFRNMKGEVVHHFLFVSSFVEYTVVDIAHVVRLNHEIPADKA 179

Query: 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF 240
           CLLSCGVSTG+GAAWKVA VE GSTVAIFGLGAVGLAVAEGARL  ASKIIGVD+NPEKF
Sbjct: 180 CLLSCGVSTGIGAAWKVAEVEEGSTVAIFGLGAVGLAVAEGARLRGASKIIGVDLNPEKF 239

Query: 241 EIGKKFGITDFINPATCGDKTVSQV 265
           EIGKKFG+T FINP  CG+K VSQV
Sbjct: 240 EIGKKFGVTHFINPTACGEKAVSQV 264

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219884|ref|NP_173660.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana] gi|75337342|sp|Q9SK87.1|ADHL2_ARATH RecName: Full=Alcohol dehydrogenase-like 2 gi|6587844|gb|AAF18533.1|AC006551_19 Very similar to alcohol dehydrogenase [Arabidopsis thaliana] gi|50253432|gb|AAT71918.1| At1g22440 [Arabidopsis thaliana] gi|51972064|gb|AAU15136.1| At1g22440 [Arabidopsis thaliana] gi|332192121|gb|AEE30242.1| alcohol dehydrogenase-like 2 [Arabidopsis thaliana]

 Score =  347 bits (890), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/261 (66%), Positives = 209/261 (80%), Gaps = 2/261 (0%)

Query: 6   ASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD 65
           AS   GK IRCKAAI R  G+PLVIEEI+V+PP+A+E+RIKILCTSLCH+DVTFWK  + 
Sbjct: 4   ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSG 63

Query: 66  LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
            P    P I GHEAVGVVES+GE V+  K+ D+VLP+FH  C EC++C S KSN C+K+ 
Sbjct: 64  -PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query: 126 RGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
             Y  N  R G TSRF++ +G+ IHHF+ +SSFTEY+VVDI H+VKI+P IP+ IA LLS
Sbjct: 123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           C V+TG+GAAWKVA VE GSTV IFGLGAVGLAVAEG RL  A+KIIGVD+NP KFEIGK
Sbjct: 183 CSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGK 242

Query: 245 KFGITDFINPATCGDKTVSQV 265
           +FGITDF+NPA CG+KT+S+V
Sbjct: 243 RFGITDFVNPALCGEKTISEV 263

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845266|ref|XP_002890514.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata] gi|297336356|gb|EFH66773.1| hypothetical protein ARALYDRAFT_472484 [Arabidopsis lyrata subsp. lyrata]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 171/266 (64%), Positives = 211/266 (79%), Gaps = 2/266 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M+  S S   GK IRCKAAI R  G+ LVIEEI+V+PP+A+E+RIKILCTSLCH+DVTFW
Sbjct: 1   MDKASLSSTEGKPIRCKAAILRKAGEALVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K  +  P    P I GHEAVGVVES+G  V+  K+ D+VLP+F   C EC++CKS KSN 
Sbjct: 61  KLESG-PLARFPRILGHEAVGVVESIGANVDGFKQGDVVLPVFQPQCEECKECKSPKSNW 119

Query: 121 CSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
           C+++   +  N  R G TSRF++  G+VIHHF+ +SSFTEY+VVDI H+VKI+P IP+ I
Sbjct: 120 CTRYTNDFLSNTRRYGMTSRFKDSFGEVIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDI 179

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
           A LLSCGV+TG+GAAWKVA VE GSTVAIFGLGAVGLAVAEG RL  A+KIIGVD+NP K
Sbjct: 180 AALLSCGVATGIGAAWKVADVEEGSTVAIFGLGAVGLAVAEGVRLRGATKIIGVDLNPAK 239

Query: 240 FEIGKKFGITDFINPATCGDKTVSQV 265
           FEIGK++G+TDF+NPA CG+KT+S+V
Sbjct: 240 FEIGKRYGMTDFVNPALCGEKTISEV 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845264|ref|XP_002890513.1| hypothetical protein ARALYDRAFT_472482 [Arabidopsis lyrata subsp. lyrata] gi|297336355|gb|EFH66772.1| hypothetical protein ARALYDRAFT_472482 [Arabidopsis lyrata subsp. lyrata]

 Score =  345 bits (886), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/266 (64%), Positives = 207/266 (77%), Gaps = 2/266 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M+N S S   GK IRCKAAICR  G+ LVIE+I V+PP+ +E+RIKILCTSLCH+D+TFW
Sbjct: 1   MDNTSFSSNEGKPIRCKAAICRKAGEALVIEDIHVDPPQPYEVRIKILCTSLCHTDLTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K     P    P I GHEAVGVVES+GE V   K+ D+VLP+FH  C EC+DCKSSK+N 
Sbjct: 61  KLDFG-PISRFPRILGHEAVGVVESIGENVVGFKQGDVVLPVFHPYCEECKDCKSSKTNW 119

Query: 121 CSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
           C ++   +  N  R G  SRF++  G+VIHHFL +SSF+EY+VVDI H+VKI+P IP+  
Sbjct: 120 CERYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDK 179

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
           A LLSCGVSTG+GAAWKVA VE GSTVA+FGLGAVGLAVAEGARL  A+KIIG+D NP+K
Sbjct: 180 AALLSCGVSTGIGAAWKVANVEEGSTVAVFGLGAVGLAVAEGARLRGAAKIIGIDTNPDK 239

Query: 240 FEIGKKFGITDFINPATCGDKTVSQV 265
           FE+GKKFG TDFINP  CG+K VS+V
Sbjct: 240 FELGKKFGFTDFINPTLCGEKKVSEV 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  345 bits (885), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 176/265 (66%), Positives = 205/265 (77%), Gaps = 2/265 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M +K A+   G+ IRCKAAICR PG PL IEEI V PP   E RI+++CTSLCHSDVTFW
Sbjct: 1   MEDKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K   ++P    P I GHEAVGVVESVGE V EV + D+V+PIF  DCGEC DCKSSKSN 
Sbjct: 61  K--MEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNL 118

Query: 121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
           CSKF     P MPR  TSRF +LKGD+IHHFL +SSF+EY+VVDI H+ KI P IP   A
Sbjct: 119 CSKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRA 178

Query: 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF 240
           CLLSCGVSTGVGAAW+ AGVE GSTV IFGLG++GLAVAEGARL  A++IIGVD+NPEK+
Sbjct: 179 CLLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKY 238

Query: 241 EIGKKFGITDFINPATCGDKTVSQV 265
           E GKKFG+TDF++     +K+VSQV
Sbjct: 239 ETGKKFGLTDFVHAGESENKSVSQV 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357465103|ref|XP_003602833.1| Alcohol dehydrogenase-like protein [Medicago truncatula] gi|355491881|gb|AES73084.1| Alcohol dehydrogenase-like protein [Medicago truncatula]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/256 (70%), Positives = 215/256 (83%), Gaps = 1/256 (0%)

Query: 11  GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GK IRCKAAIC+  G+PLVIEE+E++PPK+WE+RIKILCTSLCHSDVTFWK ++  P   
Sbjct: 13  GKPIRCKAAICKKSGEPLVIEEVELDPPKSWEVRIKILCTSLCHSDVTFWKMNSSAPTAR 72

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
            P I GHEAVG+VESVGE VEEVKE DLV+P+F  +CGEC DC S+KSN C+KFG     
Sbjct: 73  FPRILGHEAVGLVESVGENVEEVKEGDLVVPVFLPNCGECIDCGSTKSNNCTKFGNKPIR 132

Query: 131 NMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
           +MPRDGTSRFR++KG+V+HH L +SSF+EY+VVD+THVVKIT  IPL  ACLLSCGVSTG
Sbjct: 133 DMPRDGTSRFRDMKGEVVHHLLGVSSFSEYTVVDVTHVVKITHDIPLDKACLLSCGVSTG 192

Query: 191 VGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
           +GAAWKVA VE G+TVAIFGLGAVGLAVA  A+   ASKIIGVD+N +KFEIGK+FGITD
Sbjct: 193 IGAAWKVADVEKGTTVAIFGLGAVGLAVAVAAKQRGASKIIGVDLNHDKFEIGKQFGITD 252

Query: 251 FINP-ATCGDKTVSQV 265
           F+NP +T  +K+VS+V
Sbjct: 253 FVNPSSTSNEKSVSEV 268

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219882|ref|NP_173659.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|79318344|ref|NP_001031079.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|75337341|sp|Q9SK86.1|ADHL1_ARATH RecName: Full=Alcohol dehydrogenase-like 1 gi|6587845|gb|AAF18534.1|AC006551_20 Very similar to alcohol dehydrogenase [Arabidopsis thaliana] gi|20260430|gb|AAM13113.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|22136286|gb|AAM91221.1| putative alcohol dehydrogenase [Arabidopsis thaliana] gi|332192119|gb|AEE30240.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana] gi|332192120|gb|AEE30241.1| alcohol dehydrogenase-like 1 [Arabidopsis thaliana]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 169/266 (63%), Positives = 206/266 (77%), Gaps = 2/266 (0%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           M+    S   GK I CKAAICR  G+ LVIE+I V+PP+A+E+RIKILCTSLCH+D+TFW
Sbjct: 1   MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT 120
           K S   P    P I GHEAVGVVES+GE V+  K+ D+VLP+FH  C EC+DCKSSK+N 
Sbjct: 61  KLSFG-PISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNW 119

Query: 121 CSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
           C ++   +  N  R G  SRF++  G+VIHHFL +SSF+EY+VVDI H+VKI+P IP+  
Sbjct: 120 CDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDK 179

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
           A LLSCGVSTG+GAAWKVA VE GST+AIFGLGAVGLAVAEGARL  A+KIIG+D N +K
Sbjct: 180 AALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDK 239

Query: 240 FEIGKKFGITDFINPATCGDKTVSQV 265
           FE+GKKFG TDFINP  CG+K +S+V
Sbjct: 240 FELGKKFGFTDFINPTLCGEKKISEV 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 175/264 (66%), Positives = 204/264 (77%), Gaps = 2/264 (0%)

Query: 2   NNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK 61
           +  S+S   G+ IRCKAAICR PG PL IEEI V PP   E RI+++CTSLCHSDVTFWK
Sbjct: 3   SQNSSSLCEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFWK 62

Query: 62  SSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC 121
              ++P    P I GHEAVGVVESVGE V EV + D+V+PIF  DCGEC DCKSSKSN C
Sbjct: 63  --MEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 120

Query: 122 SKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC 181
           SKF     P MPR  TSRF +LKGD+IHHFL +SSF+EY+VVDI H+ KI P IP   AC
Sbjct: 121 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 180

Query: 182 LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
           LLSCGVSTGVGAAW+ AGVE GSTV IFGLG++GLAVAEGARL  A++IIGVD+NPEK+E
Sbjct: 181 LLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYE 240

Query: 242 IGKKFGITDFINPATCGDKTVSQV 265
            GKKFG+TDF++     +K+VSQV
Sbjct: 241 TGKKFGLTDFVHAGESENKSVSQV 264

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 171/260 (65%), Positives = 201/260 (77%), Gaps = 2/260 (0%)

Query: 6   ASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD 65
           A    GK IRC+AA+C   G+PLV+EE+ V PP A E+RI+I+CTSLC+SD+TFWK    
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKD- 61

Query: 66  LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
            P    P I GHEAVGVVESVGE V EV E D+VLPIF  DCGEC DC+S KSN CSKF 
Sbjct: 62  -PPGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFP 120

Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
               P MPR  +SRF +LKG+V++HFL +SSF+EY+VVDI ++ KI P+IP   ACL SC
Sbjct: 121 FKVSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSC 180

Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
           GVSTGVGAAWK A VE GSTVAIFGLGA+GLAVAEGARL  AS+IIGVD+NP+KFEIGKK
Sbjct: 181 GVSTGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKK 240

Query: 246 FGITDFINPATCGDKTVSQV 265
           FG+TDF+N   CG+K V QV
Sbjct: 241 FGVTDFVNSGNCGNKPVKQV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	267
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.970	0.670	0.532	9.2e-68
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.988	0.680	0.507	7.4e-66
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.951	0.652	0.519	4.7e-64
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.981	0.671	0.490	1e-61
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.940	0.662	0.414	1.2e-44
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.887	0.630	0.407	2.2e-43
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.925	0.648	0.403	3.5e-43
ZFIN|ZDB-GENE-040426-1165	380	zgc:63568 "zgc:63568" [Danio r	0.895	0.628	0.406	9.3e-43
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.910	0.616	0.395	1.4e-41
ZFIN|ZDB-GENE-040426-1910	378	zgc:77938 "zgc:77938" [Danio r	0.906	0.640	0.406	2.2e-41

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 139/261 (53%), Positives = 170/261 (65%)

Query:     6 ASPKAGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTD 65
             AS   GK IRCKAAI R  G+PL          +A+E+RIKILCTSLCH+DVTFWK  + 
Sbjct:     4 ASITEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSG 63

Query:    66 LPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
              P    P I                      D+VLP+FH  C EC++C S KSN C+K+ 
Sbjct:    64 -PLARFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYT 122

Query:   126 RGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
               Y  N  R G TSRF++ +G+ IHHF+ +SSFTEY+VVDI H+VKI+P IP+ IA LLS
Sbjct:   123 NDYLSNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLS 182

Query:   185 CGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGK 244
             C V+TG+GAAWKVA VE GSTV IF             RL  A+KIIGVD+NP KFEIGK
Sbjct:   183 CSVATGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGK 242

Query:   245 KFGITDFINPATCGDKTVSQV 265
             +FGITDF+NPA CG+KT+S+V
Sbjct:   243 RFGITDFVNPALCGEKTISEV 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 135/266 (50%), Positives = 167/266 (62%)

Query:     1 MNNKSASPKAGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFW 60
             M+    S   GK I CKAAICR  G+ L          +A+E+RIKILCTSLCH+D+TFW
Sbjct:     1 MDKTFFSSNEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFW 60

Query:    61 KSSTDLPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNT 120
             K S   P    P I                      D+VLP+FH  C EC+DCKSSK+N 
Sbjct:    61 KLSFG-PISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNW 119

Query:   121 CSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
             C ++   +  N  R G  SRF++  G+VIHHFL +SSF+EY+VVDI H+VKI+P IP+  
Sbjct:   120 CDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDK 179

Query:   180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEK 239
             A LLSCGVSTG+GAAWKVA VE GST+AIF             RL  A+KIIG+D N +K
Sbjct:   180 AALLSCGVSTGIGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDK 239

Query:   240 FEIGKKFGITDFINPATCGDKTVSQV 265
             FE+GKKFG TDFINP  CG+K +S+V
Sbjct:   240 FELGKKFGFTDFINPTLCGEKKISEV 265

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 133/256 (51%), Positives = 164/256 (64%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
             GK IRCKAA+ R PG+ L          +A+E+RIKI+CTSLCH+DV+F K  +  P   
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSG-PLAR 70

Query:    71 LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
              P I                      D+VLP+FH  C ECRDCKSSKSN C++F   +  
Sbjct:    71 FPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLS 130

Query:   131 NMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             N  R G TSRF++  G+ I+HFL +SSF+EY+VVDI H+VKI+P IP+  A LLSCGVST
Sbjct:   131 NTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVST 190

Query:   190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
             G+GAAWKVA VE GSTVA+F             RL  A KIIGVD+NPEKFE+GKKFG T
Sbjct:   191 GIGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFT 250

Query:   250 DFINPATCGDKTVSQV 265
             DFIN   CG+  +S+V
Sbjct:   251 DFINSTLCGENKISEV 266

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 130/265 (49%), Positives = 162/265 (61%)

Query:     2 NNKSASPKAGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWK 61
             N+ S +  + K IRCKAA+ R  G+PL          + +E+RI+I+CT+LCHSDVTFWK
Sbjct:     5 NSSSDNKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWK 64

Query:    62 SSTDLPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTC 121
                 +P    P I                      D VLP F  DCG+C DCKS KSN C
Sbjct:    65 --LQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLC 122

Query:   122 SKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
             SKF     P MPR D +SRF +L G+ + HFLN+SSF+EY+V+D+ +VVKI   IP   A
Sbjct:   123 SKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRA 182

Query:   181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKF 240
             CLLSCGVSTGVGAAW+ A VE GSTV IF             RL  AS+IIGVDINP KF
Sbjct:   183 CLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKF 242

Query:   241 EIGKKFGITDFINPATCGDKTVSQV 265
             ++G+KFG+T+F+N  TC    VS+V
Sbjct:   243 QVGQKFGVTEFVNSMTCEKNRVSEV 267

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 106/256 (41%), Positives = 137/256 (53%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
             G++IRCKAA+    GKPL          +  E+RIKIL TSLCH+DV FW++    P  P
Sbjct:     5 GQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPLFP 64

Query:    71 LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGYR 129
                IF                     D VLPIF  +CGECR C S +SN C        R
Sbjct:    65 R--IFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTER 122

Query:   130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               M  DG SRF  + G  I+HFL  S+F+EY+VV    V KI P  PL   C++SCG+ST
Sbjct:   123 GGMIHDGESRF-SINGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181

Query:   190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
             G+GA   VA  + G +VAIF             R+  AS+IIGVD N ++F+  K+FG+T
Sbjct:   182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVT 241

Query:   250 DFINPATCGDKTVSQV 265
             + +NP    DK + QV
Sbjct:   242 ECVNPKD-HDKPIQQV 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 101/248 (40%), Positives = 134/248 (54%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
             GKVI+CKAA+    GKPL          KA E+R+KI  T +CH+D  +  S +D P+  
Sbjct:     5 GKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDA-YTLSGSD-PEGL 62

Query:    71 LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF----GR 126
              PVI                      D V+P++   CGEC+ CK+ K+N C K     G+
Sbjct:    63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122

Query:   127 GYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
             G  P    D TSRF   KG  + HF+  S+F+EY+VV    + K+  H PL   CLL CG
Sbjct:   123 GLMP----DNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCG 177

Query:   187 VSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKF 246
             +STG GAA   A VE GST A+F             +   A++IIG+D+NP+KFEI KKF
Sbjct:   178 ISTGYGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKF 237

Query:   247 GITDFINP 254
             G T+F+NP
Sbjct:   238 GATEFVNP 245

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 102/253 (40%), Positives = 137/253 (54%)

Query:     1 MNNKSASPKAGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFW 60
             M+  S+S +  +VI C AA+    G+PL          +  EIRIK++CTSLC SD++ W
Sbjct:     1 MSASSSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAW 60

Query:    61 KSSTDLPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNT 120
             +S + LP+     IF                     D VL +F  +CG CR C S KSN 
Sbjct:    61 ESQSLLPR-----IFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNM 115

Query:   121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
             C   G   +  M  D  +RF  +KG  ++H+  +SSF+EY+VV     VK+ P  PL   
Sbjct:   116 CQVLGMERKGLMHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKI 174

Query:   181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKF 240
             CLLSCGV+ G+GAAW VA V+ GS+V IF             +L  A++I+GVDINP K 
Sbjct:   175 CLLSCGVAAGLGAAWNVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKA 234

Query:   241 EIGKKFGITDFIN 253
             E  K FG+TDFIN
Sbjct:   235 EQAKTFGVTDFIN 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

ZFIN|ZDB-GENE-040426-1165 zgc:63568 "zgc:63568" [Danio rerio (taxid:7955)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 100/246 (40%), Positives = 129/246 (52%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL- 69
             GKVI+CK A+   PGKPL          KA E+RIKI  + +CHSD   W    D+ K+ 
Sbjct:     8 GKVIKCKVAVAWEPGKPLSIEKVEVAPPKAHEVRIKIAASGVCHSD---WAYLYDIAKMK 64

Query:    70 --PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG 127
               P P++                      D V+P+F   CG+C  C+S K+N C+K    
Sbjct:    65 PRPFPLVLGHEGAGVVESVGPGVTKVSIGDKVIPLFLPQCGQCERCQSPKTNLCTKNWEK 124

Query:   128 YRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV 187
              +  +  DGTSR    K   +H F+ IS+F+EY+VV   +V KI P  PL   CLL CGV
Sbjct:   125 TQQGVLADGTSRIT-CKNQQVHQFIGISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCGV 183

Query:   188 STGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFG 247
             STG GAA     VE GST A+F             +   AS+II VDIN +KFEIGK FG
Sbjct:   184 STGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGASRIIAVDINSDKFEIGKTFG 243

Query:   248 ITDFIN 253
              T+F+N
Sbjct:   244 ATEFVN 249

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 100/253 (39%), Positives = 132/253 (52%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
             GKVI CKAA+   P  PL          +  E+R+KIL +S+CH+D+  W  + +  +  
Sbjct:     6 GKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAERA- 64

Query:    71 LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG-YR 129
              P I                      D V+P F+ +CGEC+ CK  +SN C ++     +
Sbjct:    65 FPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDPMK 124

Query:   130 PNMPRDGTSRFREL--------KGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC 181
               M  DG +RF           +   I+HFLN S+FTEY+V+D   VVKI P+ PL    
Sbjct:   125 RVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQMS 184

Query:   182 LLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFE 241
             LLSCGVSTGVGAAW +A V+ G + A+F             R   AS+IIGVD N  KFE
Sbjct:   185 LLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASKFE 244

Query:   242 IGKKFGITDFINP 254
              GK  G+TDFINP
Sbjct:   245 KGKLMGVTDFINP 257

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

ZFIN|ZDB-GENE-040426-1910 zgc:77938 "zgc:77938" [Danio rerio (taxid:7955)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 100/246 (40%), Positives = 128/246 (52%)

Query:    11 GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKS--STDLPK 68
             GKVI+CKAA+   PGKPL          KA E+RIK++ + +CH+D TF      T  P+
Sbjct:     5 GKVIKCKAAVAWEPGKPLSIEDVEVAPPKAHEVRIKMVASGICHTDWTFLHEVGKTMNPQ 64

Query:    69 LPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY 128
              P PV+                      D V+P+    CG+C  C S K+N CSK     
Sbjct:    65 -PFPVVLGHEGAGVVESVGPGVTKMAKGDKVIPLVVPQCGQCERCLSPKTNLCSKNWEKT 123

Query:   129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS 188
             +  +  DGTSR    K   +H F+ IS+F+EY+VV   +V KI P  PL   CLL CGVS
Sbjct:   124 QQCLLADGTSRIT-CKNQQVHQFIAISTFSEYTVVPEDNVTKIHPDAPLDRVCLLGCGVS 182

Query:   189 TGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGI 248
             TG GAA     VE GST A+F             +   A++II VDIN +KFEI K FG 
Sbjct:   183 TGYGAAVNTGKVESGSTCAVFGLGAVGLAAVMGCKAAGATRIIAVDINSDKFEIAKTFGA 242

Query:   249 TDFINP 254
             T+F NP
Sbjct:   243 TEFANP 248

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O19053	ADHX_RABIT	1, ., 1, ., 1, ., 2, 8, 4	0.5220	0.8913	0.6363	yes	no
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.5140	0.8913	0.6363	yes	no
Q9SK87	ADHL2_ARATH	1, ., 1, ., 1, ., 1	0.6628	0.9700	0.6709	yes	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.5261	0.8913	0.6363	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.5180	0.8913	0.6363	yes	no
P23991	ADH1_CHICK	1, ., 1, ., 1, ., 1	0.5061	0.8988	0.6382	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.5019	0.9662	0.6807	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.5140	0.8913	0.6363	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.5220	0.8913	0.6363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921
4th Layer	1.1.1.1	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	267
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	1e-137
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-112
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-109
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-105
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	4e-96
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-95
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	5e-87
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	3e-84
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	2e-83
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	7e-80
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	1e-65
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	3e-60
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	4e-60
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	7e-48
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-43
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	8e-42
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-39
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	1e-35
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	4e-34
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	4e-34
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	9e-33
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	1e-32
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-32
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-31
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	6e-31
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-30
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-30
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	6e-30
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-29
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	7e-29
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	1e-28
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-28
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-27
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	7e-27
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-26
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	1e-24
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-24
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	8e-24
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	2e-22
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	3e-22
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	4e-22
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	1e-21
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	4e-21
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	5e-21
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	2e-20
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	4e-20
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	4e-19
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-18
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	1e-17
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	4e-17
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	8e-17
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-16
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-16
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	2e-15
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	5e-14
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	6e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-13
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	2e-13
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-13
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	2e-13
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	8e-13
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	2e-12
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	4e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	3e-11
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-10
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	2e-10
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	6e-10
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-09
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	5e-09
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	8e-09
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-08
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	3e-08
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	5e-08
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	6e-08
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	7e-08
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	2e-07
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	6e-07
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	7e-07
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-06
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-06
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	4e-06
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	2e-05
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	5e-05
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	9e-05
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	1e-04
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-04
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	3e-04
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	5e-04
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	6e-04
cd01075	200	cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding d	6e-04
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	0.001
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	0.002

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  392 bits (1008), Expect = e-137
 Identities = 149/253 (58%), Positives = 177/253 (69%), Gaps = 5/253 (1%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           I CKAA+    GKPLVIEE+EV PP+A E+RIKIL TSLCH+DV FW++    P  P   
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPR-- 58

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN-M 132
           I GHEA G+VESVGE V ++K  D VLP+F  +C ECR CKS KSN C           M
Sbjct: 59  ILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVM 118

Query: 133 PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVG 192
             DG SRF  + G  I+HF+  S+F+EY+VV +  V KI P  PL   CLLSCGVSTG+G
Sbjct: 119 INDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLG 177

Query: 193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
           AAW VA V+ GSTVAIFGLGAVGLAVAEGAR+  AS+IIGVD+NP KFE  KKFG+T+F+
Sbjct: 178 AAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFV 237

Query: 253 NPATCGDKTVSQV 265
           NP    DK V +V
Sbjct: 238 NPKDH-DKPVQEV 249

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  327 bits (841), Expect = e-112
 Identities = 153/262 (58%), Positives = 186/262 (70%), Gaps = 4/262 (1%)

Query: 6   ASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD 65
           AS   GKVI CKAA+   PG+PLV+EEI V+PP+  E+RIKIL TS+CH+D++ WK   +
Sbjct: 1   ASETQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENE 60

Query: 66  LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG 125
             +   P I GHEA G+VESVGE VE++K  D V+PIF+ +CG+CR CK  K+N C  + 
Sbjct: 61  AQR-AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYR 119

Query: 126 -RGYRPNMPRDGTSRFRELK-GDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLL 183
              ++  M  DG +RF     G  I+HFLN S+FTEY+V+D   VVKI P+ PL    LL
Sbjct: 120 VDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLL 179

Query: 184 SCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243
           SCGVSTGVGAAW  A V+ GS+VAIFGLGAVGLAVAEGAR   ASKIIGVDINPEKFE G
Sbjct: 180 SCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKG 239

Query: 244 KKFGITDFINPATCGDKTVSQV 265
           K+ GITDFINP    DK V + 
Sbjct: 240 KEMGITDFINPKDS-DKPVHER 260

Length = 381

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  320 bits (823), Expect = e-109
 Identities = 141/252 (55%), Positives = 171/252 (67%), Gaps = 6/252 (2%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           I+CKAA+    GKPLVIEEIEV PPKA E+RIK+L TS+CH+D+   +          PV
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF---KATLFPV 57

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           I GHE  G+VESVGE V  +K  D V+P+F   CGEC +C+S K+N C K+       MP
Sbjct: 58  ILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP 117

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193
            DGTSRF   KG  I+HFL  S+F++Y+VVD  +V KI P  PL   CLL CG STG GA
Sbjct: 118 -DGTSRF-TCKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGA 175

Query: 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           AW  A VE GSTVA+FGLGAVGL+   GA++  AS+IIGVDIN +KFE  K+FG TDFIN
Sbjct: 176 AWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFIN 235

Query: 254 PATCGDKTVSQV 265
           P    DK VS+V
Sbjct: 236 PKDS-DKPVSEV 246

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  309 bits (794), Expect = e-105
 Identities = 142/256 (55%), Positives = 171/256 (66%), Gaps = 12/256 (4%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           I CKAA+    GKPL IEE+EV PPKA E+RIKIL T +CH+D     S  D P+   PV
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTL-SGAD-PEGLFPV 58

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----GRGYR 129
           I GHE  G+VESVGE V  VK  D V+P++  +CGEC+ CKS K+N C K     G+G  
Sbjct: 59  ILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGL- 117

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             MP DGTSRF   KG  I+HF+  S+F+EY+VV    V KI P  PL   CLL CGV+T
Sbjct: 118 --MP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTT 173

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GA    A VE GSTVA+FGLGAVGLAV +GA+   AS+IIG+DINP+KFE+ KKFG T
Sbjct: 174 GYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT 233

Query: 250 DFINPATCGDKTVSQV 265
           D +NP    DK + QV
Sbjct: 234 DCVNPKDH-DKPIQQV 248

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  286 bits (734), Expect = 4e-96
 Identities = 130/256 (50%), Positives = 156/256 (60%), Gaps = 5/256 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+   P KP  IEEIEV PPKA E+RIKI+ T +C SD             
Sbjct: 2   AGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKL---VT 58

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           P PVI GHEA G+VESVGE V  VK  D V+P+F   CG+CR C + +SN C K   G  
Sbjct: 59  PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKP 118

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             + +DGTSRF   KG  IHHFL  S+F+EY+VVD   V KI    PL   CL+ CG ST
Sbjct: 119 QGLMQDGTSRF-TCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFST 177

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GAA   A V  GST A+FGLG VGL+   G +   AS+II VDIN +KF   K+ G T
Sbjct: 178 GYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT 237

Query: 250 DFINPATCGDKTVSQV 265
           + INP     K + +V
Sbjct: 238 ECINPQDY-KKPIQEV 252

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  285 bits (730), Expect = 1e-95
 Identities = 133/261 (50%), Positives = 172/261 (65%), Gaps = 7/261 (2%)

Query: 5   SASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST 64
           S+S     VI C+AA+    G+ LV+EE+EV PP+  EIRIK++ TSLC SD++ W+S  
Sbjct: 2   SSSISQPNVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA 61

Query: 65  DLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF 124
             P+     IFGHEA G+VES+GE V E ++ D VL +F  +CG CR C S KSN C   
Sbjct: 62  LFPR-----IFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVL 116

Query: 125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
           G   +  M  D  +RF  +KG  ++H+  +SSF+EY+VV     VK+ P  PL   CLLS
Sbjct: 117 GLERKGVMHSDQKTRF-SIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLS 175

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           CGV+ G+GAAW VA V  GS+V IFGLG VGL+VA+GA+L  AS+IIGVDINPEK E  K
Sbjct: 176 CGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235

Query: 245 KFGITDFINPATCGDKTVSQV 265
            FG+TDFINP     + + QV
Sbjct: 236 TFGVTDFINPNDL-SEPIQQV 255

Length = 378

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  262 bits (673), Expect = 5e-87
 Identities = 116/250 (46%), Positives = 155/250 (62%), Gaps = 12/250 (4%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           ++ +AA+ R  GKPL IEE++++PP+A E+ ++I  T +CH+D      S D P+   P 
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHT--LSGDDPE-GFPA 57

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----GRGYR 129
           + GHE  G+VE+VGE V  VK  D V+ +F  +CG+C+ C S K N C       G+G  
Sbjct: 58  VLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTM 117

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
           P    DGT+R     G  ++H+L  S+F EY+VV    +VKI P  PL  ACLL CGV+T
Sbjct: 118 P----DGTTRL-SGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTT 172

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G+GA    A VE G TVA+FGLG VGLA  +GA+   A +II VDINPEK E+ KKFG T
Sbjct: 173 GIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT 232

Query: 250 DFINPATCGD 259
            F+NP    D
Sbjct: 233 HFVNPKEVDD 242

Length = 366

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  255 bits (655), Expect = 3e-84
 Identities = 104/240 (43%), Positives = 132/240 (55%), Gaps = 5/240 (2%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           +AA+    GKPL IEE+E++ P   E+ ++I    LCHSD+       DLP  PLP + G
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTG--DLP-APLPAVLG 58

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE  GVVE VG  V  VK  D V+  +   CG CR C   + N C   G G       DG
Sbjct: 59  HEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-GAGILGGQLPDG 117

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK 196
           T RF    G+ +     + +F EY+VV    VVKI   IPL  A LL CGV+TGVGA   
Sbjct: 118 TRRFT-ADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVN 176

Query: 197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
            A V  G TVA+ G G VGL   +GAR+  AS+II VD  PEK E+ ++FG T  +N + 
Sbjct: 177 TARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE 236

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  253 bits (649), Expect = 2e-83
 Identities = 124/242 (51%), Positives = 151/242 (62%), Gaps = 6/242 (2%)

Query: 16  CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIF 75
           CKAA+    GKPL IEEIEV PPKA E+RIK++ T +CH+D+        LP  PLPVI 
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHV--IDGKLPT-PLPVIL 57

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPR 134
           GHE  G+VES+G  V  +K  D V+P+F   CG+C+ C + + N CSK  G   R  M  
Sbjct: 58  GHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS- 116

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
           DGTSRF   KG  IHHFL  S+F EY+VV    + KI P  PL   CL+ CG STG GAA
Sbjct: 117 DGTSRF-TCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAA 175

Query: 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254
              A V  GST A+FGLG VGL+V  G +   AS+II VDIN +KFE  K+ G T+ INP
Sbjct: 176 VNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINP 235

Query: 255 AT 256
             
Sbjct: 236 RD 237

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  244 bits (625), Expect = 7e-80
 Identities = 119/255 (46%), Positives = 163/255 (63%), Gaps = 12/255 (4%)

Query: 15  RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           + +AA+    G+PL IEE++VE P+  E+ ++I+ T +CH+D  F  S  D P+   PVI
Sbjct: 1   KSRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDA-FTLSGAD-PEGVFPVI 58

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----GRGYRP 130
            GHE  G+VE+VGE V  VK  D V+P++  +CGEC+ C S K+N C       G+G  P
Sbjct: 59  LGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMP 118

Query: 131 NMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
               DGTSRF    G  I+H++  S+F+EY+VV    + KI P  PL   CLL CGV+TG
Sbjct: 119 ----DGTSRF-SKDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTG 173

Query: 191 VGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
           +GA    A VE G TVA+FGLG +GL+V +GAR+ +AS+II +DINP KFE+ KK G TD
Sbjct: 174 IGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD 233

Query: 251 FINPATCGDKTVSQV 265
            +NP    DK + +V
Sbjct: 234 CVNPND-YDKPIQEV 247

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  208 bits (532), Expect = 1e-65
 Identities = 95/249 (38%), Positives = 134/249 (53%), Gaps = 13/249 (5%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           ++  AA+ R PG P V+E++E++ P+  E+ ++I+ T +CH+D+        LP  PLP 
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV--RDGGLP-TPLPA 57

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----GRGYR 129
           + GHE  GVVE+VG  V  +K  D V+  F   CGEC +C S     C  F      G R
Sbjct: 58  VLGHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRR 116

Query: 130 PNMPRDGTSRFRELKGDVIH-HFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS 188
           P    DG++      G  +H HF   SSF  Y+VV   +VVK+   +PL +   L CG+ 
Sbjct: 117 P----DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQ 172

Query: 189 TGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           TG GA   V     GS++A+FG GAVGLA    A++   + II VDI   + E+ K+ G 
Sbjct: 173 TGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA 232

Query: 249 TDFINPATC 257
           T  INP   
Sbjct: 233 THVINPKEE 241

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  194 bits (495), Expect = 3e-60
 Identities = 99/243 (40%), Positives = 133/243 (54%), Gaps = 12/243 (4%)

Query: 26  KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVES 85
           +PLVIEE+E++PP   E+ +KI    LCHSD++      D P+ PLP+  GHEA GVV  
Sbjct: 19  RPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVING--DRPR-PLPMALGHEAAGVVVE 75

Query: 86  VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD---GTSRFRE 142
           VGE V +++  D V+ +F   CG CR C   +   C     G   N       G  R R 
Sbjct: 76  VGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALC---EPGAAANGAGTLLSGGRRLRL 132

Query: 143 LKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEV 202
             G++ HH L +S+F EY+VV    VVKI   +PL IA L  C V TGVGA    AGV  
Sbjct: 133 RGGEINHH-LGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRP 191

Query: 203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTV 262
           G +VA+ GLG VGL+   GA    AS+++ VD+N +K  + ++ G T  +N        V
Sbjct: 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGD--PNAV 249

Query: 263 SQV 265
            QV
Sbjct: 250 EQV 252

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  194 bits (494), Expect = 4e-60
 Identities = 98/238 (41%), Positives = 126/238 (52%), Gaps = 5/238 (2%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIF 75
           KAA+   PG+P  +EEIE++ PKA E+ +K++ + LCHSD       T DLP    P++ 
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSD---EHLVTGDLPMPRYPILG 59

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           GHE  GVV  VG  V  VK  D V+  F   CG CR C +   N C         +   D
Sbjct: 60  GHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISD 119

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
           GT RF     DV    L + +F+EY+VV    VVKI   IPL  ACL+ CGV TG G+A 
Sbjct: 120 GTYRFHADGQDVGQMCL-LGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            +A V  G TV + G+G VG+   +GA +  A K+I VD    K E   KFG T    
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFA 236

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  162 bits (412), Expect = 7e-48
 Identities = 87/243 (35%), Positives = 116/243 (47%), Gaps = 8/243 (3%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+ + P  PL IEEI V  PK  EI I++    +CHSD+   K   +LP  P P + G
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKG--ELP-FPPPFVLG 58

Query: 77  HEAVGVVESVGEYVE---EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR-PNM 132
           HE  G V  VG  VE    +   D V+  F   CG+CR C   K N C  F    R    
Sbjct: 59  HEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGT 118

Query: 133 PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVG 192
             DGT+R   L G  ++ +       EY+VV  T +  +   +    + +L C   T  G
Sbjct: 119 LYDGTTRLFRLDGGPVYMYSM-GGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYG 177

Query: 193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
           A    A V  G TVA+ G+G VG +  + A+   AS II VD+  EK    K+ G T  +
Sbjct: 178 ALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTV 237

Query: 253 NPA 255
           N A
Sbjct: 238 NAA 240

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  150 bits (380), Expect = 2e-43
 Identities = 84/244 (34%), Positives = 109/244 (44%), Gaps = 39/244 (15%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+ +  G+PL IEE+ V  P   E+ IK+    +CH+D+   K   D P   LP+I G
Sbjct: 5   KAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKG--DWPVPKLPLIPG 62

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTC-SKFGRGYRPNMPR 134
           HE VG V  VGE V  +K  D V +      CGEC  C+S   N C ++   GY      
Sbjct: 63  HEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYT----T 118

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
           DG                    + EY VV   +VVKI   + L  A  L C   T   A 
Sbjct: 119 DG-------------------GYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRAL 159

Query: 195 WKVAGVEVGSTVAIFGLGAVG-----LAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
            K A V+ G  VA+ G G +G      A A GA       +I +  + EK E+ KK G  
Sbjct: 160 -KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGAE------VIAITRSEEKLELAKKLGAD 212

Query: 250 DFIN 253
             IN
Sbjct: 213 HVIN 216

Length = 339

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  146 bits (370), Expect = 8e-42
 Identities = 86/238 (36%), Positives = 116/238 (48%), Gaps = 14/238 (5%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSS-TDLPKLPLPVIF 75
           +  I R  G P+ +E I V  P   E+ + I    +CH+D+ + +    D      P + 
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND----EFPFLL 58

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           GHEA GVVE+VGE V +V   D V+  +   CG+CR CK  +   C       +     D
Sbjct: 59  GHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTD 118

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
           GT    EL        L I +F E ++V      K+ P      A LL CGV  G+GAA 
Sbjct: 119 GT----ELSPA-----LGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAV 169

Query: 196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
              GV+ G +VA+ G G VG A   GA L  ASKII VDI+  K E  ++FG T  +N
Sbjct: 170 NTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVN 227

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  137 bits (347), Expect = 3e-39
 Identities = 58/215 (26%), Positives = 89/215 (41%), Gaps = 28/215 (13%)

Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLP 101
           E+ +++    LC +D+   +     P   LP+I GHE  GVV  VG  V  VK  D V+ 
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRG-GYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVV 59

Query: 102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYS 161
           + +  CG C  C+          G         DG                    F EY 
Sbjct: 60  LPNLGCGTCELCR-----ELCPGGGILGEG--LDGG-------------------FAEYV 93

Query: 162 VVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEG 221
           VV   ++V +   + L  A LL   ++T   A  +   ++ G TV + G G VGL  A+ 
Sbjct: 94  VVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQL 153

Query: 222 ARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
           A+    +++I  D + EK E+ K+ G    I+   
Sbjct: 154 AKA-AGARVIVTDRSDEKLELAKELGADHVIDYKE 187

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  129 bits (326), Expect = 1e-35
 Identities = 73/252 (28%), Positives = 107/252 (42%), Gaps = 44/252 (17%)

Query: 16  CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPV 73
            KAA+    G KP  ++++ V  P   E+ +K+  + +CH+D+       D P K  LP+
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALG--DWPVKPKLPL 58

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM 132
           I GHE  GVV +VG  V  +K  D V +   +  CG+C  C++     C       + N 
Sbjct: 59  IGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN-----QKNS 113

Query: 133 PR--DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
               DGT                   F EY++ D  +V  I   +    A  L C   T 
Sbjct: 114 GYTVDGT-------------------FAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT- 153

Query: 191 VGAAWKVAGVEVGSTVAIFGLG------AVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           V  A K AG++ G  V I G G       V  A A G R      +I +D+  EK E+ K
Sbjct: 154 VYKALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLR------VIAIDVGDEKLELAK 207

Query: 245 KFGITDFINPAT 256
           + G   F++   
Sbjct: 208 ELGADAFVDFKK 219

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  125 bits (317), Expect = 4e-34
 Identities = 81/243 (33%), Positives = 111/243 (45%), Gaps = 30/243 (12%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIR---IKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           KA +   PGK   I   EV  PK        +++  TS+C SD+  ++     P     +
Sbjct: 2   KALVYLGPGK---IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGV--PGAKHGM 56

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           I GHE VG V  VG  V+ +K  D V       CG CR C+      C     G++    
Sbjct: 57  ILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNR 116

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDI--THVVKITPHIPLGIACLLSCGVSTGV 191
            DG                      EY  V     ++ KI   +P   A +LS  + TG 
Sbjct: 117 IDGG-------------------QAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGF 157

Query: 192 GAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251
             A ++AG++ GSTVA+ G G VGL    GARL  A++II VD NPE+ ++ K+ G TD 
Sbjct: 158 HGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDI 216

Query: 252 INP 254
           INP
Sbjct: 217 INP 219

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  125 bits (316), Expect = 4e-34
 Identities = 81/238 (34%), Positives = 113/238 (47%), Gaps = 27/238 (11%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAAI   P KPL IEE+    P   E+ IK+    +C+ D+ FWK     P+   P+I G
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGF--FPRGKYPLILG 59

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE VG VE VGE VE  K  D V+  ++  CG+C  C S + N C               
Sbjct: 60  HEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC--------------- 104

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK 196
             R R   G+ +        F EY  V    +VK+  ++    A L +C V T V A  K
Sbjct: 105 --RNRAEYGEEVDGG-----FAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-K 156

Query: 197 VAGVEVGSTVAI-FGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            AGV+ G TV +    G VG+   + A+    +++I V  +PEK +I K+ G    I+
Sbjct: 157 RAGVKKGDTVLVTGAGGGVGIHAIQLAKA-LGARVIAVTRSPEKLKILKELGADYVID 213

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  121 bits (307), Expect = 9e-33
 Identities = 70/247 (28%), Positives = 101/247 (40%), Gaps = 37/247 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           +AA+    G+PL I E+    P    + +++    +C SD   W+       LP   + G
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPH--VPG 59

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE  GVV  VGE V   +  D V   F   CG C  C++  SN C       +P     G
Sbjct: 60  HEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCE---HQVQPGFTHPG 116

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVD--ITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
                              SF EY  V     ++V++   +    A  L C  +T   A 
Sbjct: 117 -------------------SFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRAL 157

Query: 195 WKVAGVEVGSTVAIFGLGAVGL-----AVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
              A V+ G  VA+ G G VGL     A A GAR      +I VDI+ +K E+ ++ G  
Sbjct: 158 VHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR------VIAVDIDDDKLELARELGAV 211

Query: 250 DFINPAT 256
             +N + 
Sbjct: 212 ATVNASE 218

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  121 bits (306), Expect = 1e-32
 Identities = 66/240 (27%), Positives = 100/240 (41%), Gaps = 23/240 (9%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+  + G  + +EE     P   ++ I++  T +C SD+  ++           +I G
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPG-DIILG 60

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE VG V  VG  V   K  D V+   +  CG CR C++ + N C         N    G
Sbjct: 61  HEFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLC--------ENPGFYG 111

Query: 137 TS-RFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP-HIPLGIACLLSCGVSTGVGAA 194
            +     + G           F EY  V     +   P  I    A  L+  ++T     
Sbjct: 112 YAGLGGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAA-ALTEPLATAYHGH 160

Query: 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254
            + A V  G TV + G G +GL     A+L  AS +I VD +PE+ E+ K+ G  D +  
Sbjct: 161 AERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVN 220

Length = 350

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  121 bits (306), Expect = 2e-32
 Identities = 69/253 (27%), Positives = 113/253 (44%), Gaps = 28/253 (11%)

Query: 16  CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIF 75
            +AA+   PGKPL I E+ +   +   + +++    +C SDV         P++PLP+I 
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAG--RRPRVPLPIIL 58

Query: 76  GHEAVGVVESVGEYV------EEVKERDLVLPIFHRDCGECRDCKSSKSNTC-SKFGRGY 128
           GHE VG V ++G  V      E +K  D V       CG C  C       C ++   G+
Sbjct: 59  GHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGH 118

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THVVKITPHIPLGIACLLSCGV 187
             +      S                  + E+  +   T +V++  ++P  +A   +C +
Sbjct: 119 EASCDDPHLS----------------GGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCAL 162

Query: 188 STGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246
           +T V AA   AG V  G TV + G G +GL     A+L  A ++I +D +PE+ E+ ++F
Sbjct: 163 AT-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREF 221

Query: 247 GITDFINPATCGD 259
           G    I+     D
Sbjct: 222 GADATIDIDELPD 234

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  118 bits (298), Expect = 2e-31
 Identities = 68/236 (28%), Positives = 93/236 (39%), Gaps = 34/236 (14%)

Query: 25  GKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE 84
              LV+EE+ V  P   E+ +K+    +CHSD+             LP+  GHE  G V 
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHIL-DGGVPTLTKLPLTLGHEIAGTVV 69

Query: 85  SVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELK 144
            VG  V   K  D V       CG C  C+  + N C        P +  DG        
Sbjct: 70  EVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCL---NQGMPGLGIDGG------- 119

Query: 145 GDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGS 204
                       F EY VV    +V +   +P   A + +  V T   A  +   V+ G 
Sbjct: 120 ------------FAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGE 167

Query: 205 TVAIFGLGAVGL-----AVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255
           TV + GLG +GL     A A GA       +I VDI  EK E+ K+ G  + +N  
Sbjct: 168 TVLVIGLGGLGLNAVQIAKAMGA------AVIAVDIKEEKLELAKELGADEVLNSL 217

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  116 bits (294), Expect = 6e-31
 Identities = 72/241 (29%), Positives = 108/241 (44%), Gaps = 34/241 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA +   PG+ L +EE+ V  P   E+ IK+    +C +D+  ++          P++ G
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEG---EFGAAPPLVPG 57

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE  GVV +VG  V   K  D V    +  CGEC  C+  + N C            R+G
Sbjct: 58  HEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLT-AVGVT--RNG 114

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVGA 193
                               F EY VV    V KI  ++    A L   LSC V      
Sbjct: 115 -------------------GFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH----- 150

Query: 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
              + G++ G +V +FG G +GL +A+  +LN AS++   + N EK E+ KK G T+ ++
Sbjct: 151 GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD 210

Query: 254 P 254
           P
Sbjct: 211 P 211

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  115 bits (291), Expect = 2e-30
 Identities = 73/251 (29%), Positives = 101/251 (40%), Gaps = 44/251 (17%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+   P   + +EE+ V  P   E+ +K+    +C +DV   +      K P   I G
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPR--ILG 58

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC---SKFGRGYRPNMP 133
           HE  G +  VG+ V   K  D V    H  CGEC  C     N C    KFG  Y     
Sbjct: 59  HEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLY----- 113

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK-ITPHIPLGI----ACL---LSC 185
            DG                    F EY  V    V +     +P  +    A L   L+C
Sbjct: 114 -DG-------------------GFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLAC 153

Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
            +      A + AG++ G TV + G G +GL  A  A+ + A K+I  D+N  + E  KK
Sbjct: 154 CI-----NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKK 208

Query: 246 FGITDFINPAT 256
            G    I+ A 
Sbjct: 209 LGADYTIDAAE 219

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  115 bits (290), Expect = 2e-30
 Identities = 66/239 (27%), Positives = 99/239 (41%), Gaps = 25/239 (10%)

Query: 28  LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87
           + + E  V  P   E+ +++  + LC SD+ ++      P     VI GHE  GVV +VG
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQ-GVIPGHEPAGVVVAVG 70

Query: 88  EYVEEVKERDLVLPIFHRD-CGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGD 146
             V   +  D V+  +H   CG CR+C+      C+     Y  N  RDG          
Sbjct: 71  PGVTHFRVGDRVMV-YHYVGCGACRNCRRGWMQLCTSKRAAYGWN--RDG---------- 117

Query: 147 VIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTV 206
                       EY +V    ++ +   +      LL CG+ T    A +  GV    TV
Sbjct: 118 ---------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTV 167

Query: 207 AIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV 265
            + G G VGL     AR   A  +IGVD +PE+ E+ K  G    IN      + + ++
Sbjct: 168 LVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIREL 226

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  114 bits (288), Expect = 6e-30
 Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 38/251 (15%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA +   PG  L  E+I    P   E+ +K+    +C SD+  +  +        P++ G
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTG---AYHPPLVLG 57

Query: 77  HEAVGVVESVGEYVEEVKERDLV--LPIFHRDCGECRDCKSSKSNTCSK---FGRGYRPN 131
           HE  G VE VG  V+++   D V   P+    CG+C  CK  + + CS     G      
Sbjct: 58  HEFSGTVEEVGSGVDDLAVGDRVAVNPLLP--CGKCEYCKKGEYSLCSNYDYIG------ 109

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGV 191
             RDG                   +F EY  V   +++KI  H+    A ++    +  +
Sbjct: 110 SRRDG-------------------AFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVAL 149

Query: 192 GAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251
            A    AG+ +G TV + G G +GL   +  ++  A ++I VDI+ EK  + ++ G  D 
Sbjct: 150 HAVRL-AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDT 208

Query: 252 INPATCGDKTV 262
           INP     + V
Sbjct: 209 INPKEEDVEKV 219

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  113 bits (285), Expect = 2e-29
 Identities = 69/252 (27%), Positives = 107/252 (42%), Gaps = 29/252 (11%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDV-TFWKSSTDLPKLPLPVIF 75
           KA      GK   IE+  +      +  ++    + C SDV T W      P     +I 
Sbjct: 2   KAFAMLGIGKVGWIEK-PIPVCGPNDAIVRPTAVAPCTSDVHTVW---GGAPGERHGMIL 57

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           GHEAVGVVE VG  V++ K  D V+             +    +       G++ +  +D
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD 117

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVD--ITHVVKITPHIPLGIACLLSCGVSTGVGA 193
           G                    F EY  V+    ++  +   +    A +L   +STG   
Sbjct: 118 GV-------------------FAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHG 158

Query: 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           A ++A +++G TVA+FG+G VGL    GARL  A +II V   P + E+ K++G TD ++
Sbjct: 159 A-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVD 217

Query: 254 PATCGDKTVSQV 265
                   V Q+
Sbjct: 218 YKNGD--VVEQI 227

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  111 bits (280), Expect = 7e-29
 Identities = 72/246 (29%), Positives = 107/246 (43%), Gaps = 43/246 (17%)

Query: 17  KAAICRIPGKPLVIEEIEVEPP--KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           KA +C    KP  +E +++  P   A E+ +++    +C SD+  +      P    P I
Sbjct: 2   KALVCE---KPGRLEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRN--PFASYPRI 56

Query: 75  FGHEAVGVVESVGEYVEEVKERDLV--LPIFHRDCGECRDCKSSKSNTCSK---FGRGYR 129
            GHE  G V  VGE V  +K  D V   P     CGEC  C+  + N C      G    
Sbjct: 57  LGHELSGEVVEVGEGVAGLKVGDRVVVDPYIS--CGECYACRKGRPNCCENLQVLG---- 110

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             + RDG                    F EY VV    ++ +   + L  A L+   ++ 
Sbjct: 111 --VHRDGG-------------------FAEYIVVPADALL-VPEGLSLDQAALVEP-LAI 147

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G  A  + AGV  G TV + G G +GL V + A+  R +++I VDI+ E+ E  ++ G  
Sbjct: 148 GAHAVRR-AGVTAGDTVLVVGAGPIGLGVIQVAKA-RGARVIVVDIDDERLEFARELGAD 205

Query: 250 DFINPA 255
           D IN  
Sbjct: 206 DTINVG 211

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  111 bits (280), Expect = 1e-28
 Identities = 67/245 (27%), Positives = 95/245 (38%), Gaps = 38/245 (15%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL----------PKLPLPV 73
           PGKPL   EI+   P   E+ +K+    +CHSD+  W    DL            + LP+
Sbjct: 9   PGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPL 68

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           + GHE VG V +VG    +VK  D VL      CGEC  C +   N C+K          
Sbjct: 69  VLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAK---------- 118

Query: 134 RDGTSRFRELKGDVIHHFLNISS---FTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
                             L I     + EY +V  +  +     +   +A  L+C   T 
Sbjct: 119 ---------------GRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTA 163

Query: 191 VGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
             A  K+  +     V I G G +GL      +    + II VDI+  K E  K  G   
Sbjct: 164 YSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGADV 223

Query: 251 FINPA 255
            +N +
Sbjct: 224 VVNGS 228

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  111 bits (279), Expect = 1e-28
 Identities = 66/247 (26%), Positives = 95/247 (38%), Gaps = 50/247 (20%)

Query: 30  IEEIEVEPPKAWEIRIKILCTSLCHSDV-------TFW--KSSTDLPKLPLPVIFGHEAV 80
           +EE+   P K  E++IK+    +C SD+        F   +    L     PV  GHE  
Sbjct: 14  VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFS 73

Query: 81  GVVESVGEYVEEVKERDLVL--PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTS 138
           GVV  VG  V   K  D V+  P     CG C  CK    N C   G             
Sbjct: 74  GVVVEVGSGVTGFKVGDRVVVEPTIK--CGTCGACKRGLYNLCDSLG------------- 118

Query: 139 RFRELKGDVIHHFLNISS----FTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGV 191
                       F+ +      F EY VV   HV K+  ++PL  A L   L+       
Sbjct: 119 ------------FIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH--- 163

Query: 192 GAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251
             A + +G + G T  + G G +GL      +   ASKII  + +  + E+ ++ G T  
Sbjct: 164 --AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIV 221

Query: 252 INPATCG 258
           ++P    
Sbjct: 222 LDPTEVD 228

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  108 bits (271), Expect = 1e-27
 Identities = 68/236 (28%), Positives = 102/236 (43%), Gaps = 37/236 (15%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA I     +   IEE+    P   E+ IK+    LC+ D+   +     P++  PVI G
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGF--YPRMKYPVILG 59

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HE VG VE VGE V+  K  D V  + +   G C  C+S +   C               
Sbjct: 60  HEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC--------------- 104

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK 196
             + R   G+ +  F     F EY+ V +T +VK+ P++    A ++ C          +
Sbjct: 105 --KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-R 156

Query: 197 VAGVEVGSTVAIFGLG------AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246
            AGV+ G TV + G G      A+ +A A GA      K+I V  +  K +I  K+
Sbjct: 157 RAGVKKGETVLVTGAGGGVGIHAIQVAKALGA------KVIAVTSSESKAKIVSKY 206

Length = 334

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  106 bits (267), Expect = 7e-27
 Identities = 69/250 (27%), Positives = 102/250 (40%), Gaps = 60/250 (24%)

Query: 26  KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS-STDLPKLPLPVIFGHEAVGVVE 84
             L +EE  +  P   E+ +++    +C SDV ++K        +  P++ GHE+ G V 
Sbjct: 8   GDLRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVV 67

Query: 85  SVGEYVEEVKERDLV-----LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM------P 133
           +VG  V  +K  D V     +P     C  C  CKS + N C        P+M      P
Sbjct: 68  AVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLC--------PDMRFAATPP 114

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI-----ACL--LSCG 186
            DGT                      Y    + H       +P  +     A +  LS G
Sbjct: 115 VDGT-------------------LCRY----VNHPADFCHKLPDNVSLEEGALVEPLSVG 151

Query: 187 VSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246
           V      A + AGV  G TV +FG G +GL  A  A+   A+K++  DI+P + E  K+ 
Sbjct: 152 V-----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL 206

Query: 247 GITDFINPAT 256
           G T  +N  T
Sbjct: 207 GATHTVNVRT 216

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  104 bits (262), Expect = 2e-26
 Identities = 73/242 (30%), Positives = 104/242 (42%), Gaps = 35/242 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+    G PL  EE+ V  P   E+ IKI    +CH+D+   +   D      P++ G
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEG--DWGGSKYPLVPG 58

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPR 134
           HE VG V  VG  VE  K  D V +      CG C  C+    N C K    GY      
Sbjct: 59  HEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYT----T 114

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
            G                    + EY V D  + V +   +PL  A  L C   T V +A
Sbjct: 115 QG-------------------GYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSA 154

Query: 195 WKVAGVEVGSTVAIFGLGAVG-LAVAEGARLNRA--SKIIGVDINPEKFEIGKKFGITDF 251
            + AG   G  VA+ G+G +G LAV    +  RA   + + +  +P+K E+ +K G  + 
Sbjct: 155 LRDAGPRPGERVAVLGIGGLGHLAV----QYARAMGFETVAITRSPDKRELARKLGADEV 210

Query: 252 IN 253
           ++
Sbjct: 211 VD 212

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =   99 bits (250), Expect = 1e-24
 Identities = 67/221 (30%), Positives = 91/221 (41%), Gaps = 43/221 (19%)

Query: 17  KAAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSD--VTFWKSSTDLPKLP 70
           KA +   PG     PL + E+ V  P   E+ IK+    +C +D  +       DLP   
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIV----EGDLPPPK 57

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFG-RGY 128
           LP+I GHE VG VE+VG  V      D V +P     CGECR C+S + N C      GY
Sbjct: 58  LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGY 117

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP-HIPLGIACLLSCGV 187
                 DG                    + EY V D      I   +     A LL  G+
Sbjct: 118 T----VDG-------------------GYAEYMVADERFAYPIPEDYDDEEAAPLLCAGI 154

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVG-----LAVAEGAR 223
             G   A K+AG++ G  + ++G GA       +A  +GA 
Sbjct: 155 -IGYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAE 193

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  100 bits (250), Expect = 1e-24
 Identities = 76/242 (31%), Positives = 98/242 (40%), Gaps = 46/242 (19%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDV-----TFWKSSTDLPKLPLPVIFGHE 78
            G    + E+ V  P   E+ IK+L  S+C +DV       W  S   P    P+IFGHE
Sbjct: 9   AGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP----PLIFGHE 64

Query: 79  AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSK---FGRGYRPNMPRD 135
             G V  VGE V  VK  D V    H  CG+C  C++   + C      G      +  D
Sbjct: 65  FAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILG------VDTD 118

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVG 192
           G                    F EY VV   ++ K    IP  IA +   L   V T + 
Sbjct: 119 GC-------------------FAEYVVVPEENLWKNDKDIPPEIASIQEPLGNAVHTVL- 158

Query: 193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
                AG   G +V I G G +GL     A+   AS +I  D NP + E+ KK G    I
Sbjct: 159 -----AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVI 213

Query: 253 NP 254
           NP
Sbjct: 214 NP 215

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 98.0 bits (245), Expect = 8e-24
 Identities = 72/257 (28%), Positives = 108/257 (42%), Gaps = 37/257 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS--STDLPKLPLPVI 74
           KAA     GKPL +E++ V  P   ++ +++    +CHSD+          LP   LP  
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPY-KLPFT 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVL---PIFHRDCGECRDCKSSKSNTCSKFGRGYRPN 131
            GHE  G VE VG  V+ +KE D V+   P     CG CR C+  + N C        P 
Sbjct: 61  LGHENAGWVEEVGSGVDGLKEGDPVVVHPPWG---CGTCRYCRRGEENYCE---NARFPG 114

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGV 191
           +  DG                    F EY +V    +VK+   +    A  L+    T  
Sbjct: 115 IGTDG-------------------GFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAY 155

Query: 192 GAAWKVAGV-EVGSTVAIFGLGAVG-LAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
            A  K     + GSTV + G+G +G +AV +  R    + +I VD + E  ++ ++ G  
Sbjct: 156 HAVKKALPYLDPGSTVVVIGVGGLGHIAV-QILRALTPATVIAVDRSEEALKLAERLGAD 214

Query: 250 DFINPATCGDKTVSQVN 266
             +N     D  V +V 
Sbjct: 215 HVLNA---SDDVVEEVR 228

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 94.2 bits (234), Expect = 2e-22
 Identities = 70/243 (28%), Positives = 99/243 (40%), Gaps = 46/243 (18%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTF-----WKSSTDLPKLPLPVIFGHE 78
           PG    + E+ V  P   E+ IK+L TS+C +DV       W  S     +  P + GHE
Sbjct: 7   PGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSR----IKPPQVVGHE 62

Query: 79  AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSK---FGRGYRPNMPRD 135
             G V  +G  VE +K  D V    H  CG+C  C+  + + C     FG      +  D
Sbjct: 63  VAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFG------VDTD 116

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVG 192
           G                    F EY+VV   ++ K    IP   A +   L   V T + 
Sbjct: 117 GC-------------------FAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL- 156

Query: 193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
                AG   G +V + G G +GL     A+ + A  +I  D N  + E+ KK G T  +
Sbjct: 157 -----AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVV 211

Query: 253 NPA 255
           NP 
Sbjct: 212 NPF 214

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 93.7 bits (234), Expect = 3e-22
 Identities = 66/236 (27%), Positives = 91/236 (38%), Gaps = 30/236 (12%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83
               L     E  P    ++ IKI    +CHSD+   ++  +      P++ GHE VG+V
Sbjct: 8   ASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRN--EWGPTKYPLVPGHEIVGIV 65

Query: 84  ESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRE 142
            +VG  V + K  D V +      CG C  CKS +   C K    Y      DGT     
Sbjct: 66  VAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYN-GKYPDGT----- 119

Query: 143 LKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEV 202
                    +    + ++ VVD   V KI   +    A  L C   T V +  K  GV  
Sbjct: 120 ---------ITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVGP 169

Query: 203 GSTVAIFGLG-----AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           G  V + G+G     AV  A A GA       +     +P K E   K G  +FI 
Sbjct: 170 GKRVGVVGIGGLGHLAVKFAKALGAE------VTAFSRSPSKKEDALKLGADEFIA 219

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 93.5 bits (233), Expect = 4e-22
 Identities = 72/218 (33%), Positives = 94/218 (43%), Gaps = 33/218 (15%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +K+L T++C +D+   K   D+P +    I GHE VGVVE VG  V   K  D VL    
Sbjct: 30  VKMLKTTICGTDLHILKG--DVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCI 87

Query: 105 RDCGECRDCKSSKSNTCSKFG--RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSV 162
             CG C  C+    + C   G   G       DGT                     EY  
Sbjct: 88  SSCGTCGYCRKGLYSHCESGGWILGNLI----DGTQ-------------------AEY-- 122

Query: 163 VDITH----VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
           V I H    + K+   +    A +LS  + TG         V+ G TVAI G G VGLA 
Sbjct: 123 VRIPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAA 182

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
              A+L   SKII VD++  + E+ KK G T  +N A 
Sbjct: 183 LLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAK 220

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 91.8 bits (229), Expect = 1e-21
 Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 42/241 (17%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTF-----WKSSTDLPKLPLPVIFGHE 78
               L + ++ V  P   ++ IK+  T++C +DV       W   T    +P+P++ GHE
Sbjct: 9   AEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKT----IPVPMVVGHE 64

Query: 79  AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSK-FGRGYRPNMPRDGT 137
            VG V  VG  V   K  D V    H  CG CR+C++ + + C    G G      R G 
Sbjct: 65  FVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVN----RPG- 119

Query: 138 SRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVGAA 194
                             +F EY V+   +V KI   IP  +A +       V T +  +
Sbjct: 120 ------------------AFAEYLVIPAFNVWKIPDDIPDDLAAIFDPFGNAVHTAL--S 159

Query: 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254
           + +    VG  V I G G +G+  A  A+   A  ++  D+N  + E+ +K G T  +N 
Sbjct: 160 FDL----VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV 215

Query: 255 A 255
           A
Sbjct: 216 A 216

Length = 341

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 90.1 bits (224), Expect = 4e-21
 Identities = 61/229 (26%), Positives = 98/229 (42%), Gaps = 37/229 (16%)

Query: 30  IEEIEVEPPKAW--EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87
           +E  EV  P+    E+ IK+    +C SD+  +K   D  + P  V+ GHE  G +  VG
Sbjct: 14  VELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETP--VVLGHEFSGTIVEVG 71

Query: 88  EYVEEVKERDLVLPI-FHRDCGECRDCKSSKSNTC-SKFGRGYRPNMPRDGTSRFRELKG 145
             VE  K  D V+       CG C  C+    N C  + G G +     DG         
Sbjct: 72  PDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQ----ADG--------- 118

Query: 146 DVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVGAAWKVAGVEV 202
                      F EY +V    + ++  ++ L  A L   L+  V     A  + +G+  
Sbjct: 119 ----------GFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----AVAERSGIRP 164

Query: 203 GSTVAIFGLGAVGLAVAEGARLNRASKII-GVDINPEKFEIGKKFGITD 250
           G TV +FG G +GL  A+ A+L  A+ ++ G + +  + ++ K+ G   
Sbjct: 165 GDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADA 213

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 85.0 bits (211), Expect = 5e-21
 Identities = 35/130 (26%), Positives = 56/130 (43%), Gaps = 24/130 (18%)

Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLP 101
           E+ +++    +C SD+  ++   + P + LP+I GHE  G+VE VG  V  +K  D V+ 
Sbjct: 3   EVLVRVKAAGICGSDLHIYRG--EPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVV 60

Query: 102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYS 161
                CG+C  C+  + N C     G    +  DG                    F EY 
Sbjct: 61  YPLIPCGKCAACREGRENLC---PNGKFLGVHLDGG-------------------FAEYV 98

Query: 162 VVDITHVVKI 171
           VV   ++V +
Sbjct: 99  VVPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 88.8 bits (221), Expect = 2e-20
 Identities = 65/242 (26%), Positives = 100/242 (41%), Gaps = 29/242 (11%)

Query: 21  CRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW-KSSTDLPKLPLPVIFGHE 78
           C I     L +EE     P   E+R+++    +C SD+ ++        +L  P++ GHE
Sbjct: 1   CVIHAAGDLRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHE 60

Query: 79  AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGT- 137
             GVVE+VG  V  +     V     R CG C  C++ + N C         NM   G+ 
Sbjct: 61  VSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLC--------LNMRFLGSA 112

Query: 138 SRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVGAA 194
            RF  ++G           F EY VVD +  V +   + L  A L   L+  +      A
Sbjct: 113 MRFPHVQG----------GFREYLVVDASQCVPLPDGLSLRRAALAEPLAVALH-----A 157

Query: 195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254
              AG   G  V + G G +G  V   AR   A++I+  D+      + +  G  + +N 
Sbjct: 158 VNRAGDLAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNL 217

Query: 255 AT 256
           A 
Sbjct: 218 AR 219

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 88.0 bits (218), Expect = 4e-20
 Identities = 67/257 (26%), Positives = 103/257 (40%), Gaps = 36/257 (14%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD---- 65
            GK+    + + R P   L +E++ V   K  EI I++    +C SD+  +++  D    
Sbjct: 23  EGKLTNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYIL 80

Query: 66  LPKLP-LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF 124
            P L   PV+ GHE  GVVE  G+ V+  ++ D V       CG CR C+S   N C   
Sbjct: 81  YPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNL 140

Query: 125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLG------ 178
                     DG                   +F EY  V+  +  +I     +       
Sbjct: 141 KE---LGFSADG-------------------AFAEYIAVNARYAWEINELREIYSEDKAF 178

Query: 179 IACLLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP 237
            A  L    S      +   G    G+ V ++G G +GLA    A+   ASK+I  +I+ 
Sbjct: 179 EAGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISE 238

Query: 238 EKFEIGKKFGITDFINP 254
           E+  + K+ G     NP
Sbjct: 239 ERRNLAKEMGADYVFNP 255

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 68/223 (30%), Positives = 99/223 (44%), Gaps = 31/223 (13%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +++  T++C SD+  +     +P +    I GHE +GVVE VG  V  +K  D V+  F 
Sbjct: 30  VRVTATAICGSDLHLY--HGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFT 87

Query: 105 RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHH---FLNISSFT--- 158
             CGEC  CK    + C             D T+   E+     H        S  T   
Sbjct: 88  IACGECFYCKRGLYSQC-------------DNTNPSAEMAKLYGHAGAGIFGYSHLTGGY 134

Query: 159 -----EYSVV---DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG 210
                EY  V   D+    KI   +    A  LS  + TG  AA ++A V+ G TVA++G
Sbjct: 135 AGGQAEYVRVPFADVGPF-KIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWG 192

Query: 211 LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            G VGL  A  A+L  A ++I +D  PE+ E+ +     + IN
Sbjct: 193 CGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETIN 235

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 83.8 bits (208), Expect = 1e-18
 Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 31/243 (12%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA     PG PL + E +V  P   E+ IK+    +CHSD    + +  +P L  P + G
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGA--MPGLSYPRVPG 59

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           HE VG +++VGE V   K  D V +      CG C  C+      C     G    + RD
Sbjct: 60  HEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCE---NGKVTGVTRD 116

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI-PLGIACLLSCGVSTGVGAA 194
           G                    + EY +     + +I   +     A LL  GV+T    A
Sbjct: 117 G-------------------GYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTT--FNA 155

Query: 195 WKVAGVEVGSTVAIFGLGAVG-LAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            + +G + G  VA+ G+G +G LAV   A++    + + +    +K ++ +K G   +I+
Sbjct: 156 LRNSGAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARKLGAHHYID 213

Query: 254 PAT 256
            + 
Sbjct: 214 TSK 216

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 80.8 bits (200), Expect = 1e-17
 Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 37/239 (15%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           KA + R  G P  L   ++    P   E+ +++   +L H D+ + +      KLPLP I
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDL-WVRRGMPGIKLPLPHI 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGYRPNMP 133
            G +  GVVE+VG  V  VK    V+      CG C  C + + N C+++G  G      
Sbjct: 61  LGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEH---- 116

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193
            DG                    + EY  V   +++ I  ++    A        T    
Sbjct: 117 VDGG-------------------YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT---- 153

Query: 194 AWKV----AGVEVGSTVAIFGLGA-VGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
           AW +    A +  G TV + G G+ VG A  + A+L  A  +I    + +K E  K+ G
Sbjct: 154 AWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELG 211

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 69/247 (27%), Positives = 105/247 (42%), Gaps = 33/247 (13%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+        V+ E  + P K  E  +K+    +CH+D+    ++ D        I G
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV--ANGDFGDKT-GRILG 58

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPR 134
           HE +G+V+ VG  V  +K  D V +  F   CG C  C + +   C      GY      
Sbjct: 59  HEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTV---- 114

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGVGA 193
           DG                      E  +V   + VK+   +    A  ++C GV+T    
Sbjct: 115 DG-------------------GMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT--YK 153

Query: 194 AWKVAGVEVGSTVAIFGLGAVG-LAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
           A KV+G++ G  +AI+G G +G LA+     +  A K+I VDIN +K  + K+ G    I
Sbjct: 154 AIKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTI 212

Query: 253 NPATCGD 259
           N     D
Sbjct: 213 NSKRVED 219

Length = 338

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 78.5 bits (194), Expect = 8e-17
 Identities = 63/209 (30%), Positives = 90/209 (43%), Gaps = 32/209 (15%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +K+   ++C SD+  ++            + GHE VG V  VG  V  +K  D V+  F 
Sbjct: 30  VKVTAAAICGSDLHIYRGH---IPSTPGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFT 86

Query: 105 RDCGECRDCKSSKSNTCSK---FGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYS 161
             CGEC  C+  +S  C+K   FG    PN+  DG                   +  EY 
Sbjct: 87  IACGECFYCRRGQSGRCAKGGLFGYAGSPNL--DG-------------------AQAEYV 125

Query: 162 VV---DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
            V   D T ++K+   +    A LL   + TG   A K A V  G TVA+ G G VGL  
Sbjct: 126 RVPFADGT-LLKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCA 183

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFG 247
              A++  A+++  VD  PE+ E     G
Sbjct: 184 VLSAQVLGAARVFAVDPVPERLERAAALG 212

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 33/227 (14%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           I+++ T +C SD+  ++  +   + P P+  GHE VGVVE VG  V  VK  D V+  F 
Sbjct: 30  IRVVATCVCGSDLWPYRGVSP-TRAPAPI--GHEFVGVVEEVGSEVTSVKPGDFVIAPFA 86

Query: 105 RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD 164
              G C  C++  + +C   G         DG                    +    + D
Sbjct: 87  ISDGTCPFCRAGFTTSCVHGGFWGAFV---DGGQ----------------GEYVRVPLAD 127

Query: 165 ITHVVKITPHIPLGIACL------LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
            T +VK  P  P     L      LS  + TG  AA   AGV  GSTV + G GAVGL  
Sbjct: 128 GT-LVK-VPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCA 184

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV 265
              A+   A +II +  + ++  + ++FG TD +  A  G++ V++V
Sbjct: 185 VLAAKRLGAERIIAMSRHEDRQALAREFGATDIV--AERGEEAVARV 229

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 68/253 (26%), Positives = 103/253 (40%), Gaps = 39/253 (15%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDV-------TFWKSSTDLPKL 69
           +A +C  P     +EE+ V  P   EI +K+    +C  D+       +FW      P +
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 70  PLPVIFGHEAVGVVESVGEYVEE--VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-R 126
             P+I GHE VG V  +GE  EE  VK  D V+      C  CR C   +   C K    
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLY 120

Query: 127 GYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---L 183
           G++ N+   G + +     + I H                   K+   IP   A L   L
Sbjct: 121 GFQNNVN-GGMAEYMRFPKEAIVH-------------------KVPDDIPPEDAILIEPL 160

Query: 184 SCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG 243
           +C +      A   A ++    V + G G +GL +   ARL    K+I +D+  E+  + 
Sbjct: 161 ACALH-----AVDRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA 215

Query: 244 KKFGITDFINPAT 256
           +KFG    +NP  
Sbjct: 216 RKFGADVVLNPPE 228

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 74.6 bits (183), Expect = 2e-15
 Identities = 60/231 (25%), Positives = 106/231 (45%), Gaps = 20/231 (8%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83
           PGKP+V   +E+    A ++ +K+    +CH+D++++           P+  GHE  G V
Sbjct: 7   PGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHAL-PLALGHEISGRV 65

Query: 84  ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFREL 143
              G        + +++P     CGEC  CK+ +   C          MP +      ++
Sbjct: 66  IQAGAGAASWIGKAVIVPAV-IPCGECELCKTGRGTICRA------QKMPGN------DM 112

Query: 144 KGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVG 203
           +G    H +  +      VVD   +      +PL    +++  V+T   AA + AG++ G
Sbjct: 113 QGGFASHIVVPAKG--LCVVDEARLAA--AGLPLEHVSVVADAVTTPYQAAVQ-AGLKKG 167

Query: 204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP 254
             V + G G VG  + + A+   A+ ++ +DI+PEK E+ K FG    +NP
Sbjct: 168 DLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNP 217

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 70.6 bits (173), Expect = 5e-14
 Identities = 57/237 (24%), Positives = 91/237 (38%), Gaps = 40/237 (16%)

Query: 19  AICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVT-FWKSSTDLPKLPLPVIFGH 77
            +   P  P +  + +V         +K+  + LC SD+   +K+         P+  GH
Sbjct: 13  RVAESP-IPEIKHQDDV--------LVKVASSGLCGSDIPRIFKNGAHY----YPITLGH 59

Query: 78  EAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGYRPNMPRDG 136
           E  G VE+VG  V+++   D V  +    C  C +C     + C+K+   G R    RDG
Sbjct: 60  EFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSR----RDG 115

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK 196
                                 EY VV   ++  +   +P+     +   ++ G+ A   
Sbjct: 116 -------------------GNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHL 155

Query: 197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
             G E G  V I G G +GL   + A    A  +  +DIN EK  + K  G     N
Sbjct: 156 AQGCE-GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFN 211

Length = 347

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 67/233 (28%), Positives = 95/233 (40%), Gaps = 42/233 (18%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +K++ T++C SD    +  T  P     ++ GHE  G V   G  VE +K  D+V   F+
Sbjct: 38  LKVVTTNICGSDQHMVRGRTTAPT---GLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFN 94

Query: 105 RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGD----------VIHHFLNI 154
             CG CR+CK   +  C         N  R G +      G           V +   N+
Sbjct: 95  IACGRCRNCKEGHTGVCLNV------NPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNL 148

Query: 155 SSFTEY-----SVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF 209
             F +       + D+T +  I P               TG   A   AGV  GSTV I 
Sbjct: 149 LKFPDRDQALEKIRDLTMLSDIFP---------------TGYHGAV-TAGVGPGSTVYIA 192

Query: 210 GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG--ITDFINPATCGDK 260
           G G VGLA A  A+L  A+ +I  D+NP +    + FG    D    AT  ++
Sbjct: 193 GAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQ 245

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 42/233 (18%), Positives = 77/233 (33%), Gaps = 59/233 (25%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGV 82
           PG+   +EE     P   ++ +++    +C SD+  +            P   GHE  G 
Sbjct: 4   PGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGR 62

Query: 83  VESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRE 142
           V ++G  V  +   D V                                           
Sbjct: 63  VVALGPGVRGLAVGDRVA------------------------------------------ 80

Query: 143 LKGDVIHHFLNISSFTEYSVVDITHVVKITPHIP--LGIACLLSCGVSTGVGAAWKVAGV 200
                    L+  +F EY + D  H V +   +         L C ++      ++   +
Sbjct: 81  --------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRGWI 127

Query: 201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
             G TVA+ G G +GL   + A    A ++I +D  P +  + ++ G T+ + 
Sbjct: 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVT 180

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 54/254 (21%), Positives = 91/254 (35%), Gaps = 56/254 (22%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK---------SSTDLP 67
           +AA+ R    PLV+ ++    P   ++ +K+L   +C SD+                 L 
Sbjct: 2   RAAVFR--DGPLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLM 59

Query: 68  KLPLPVIFGHEAVGVVESVGEYVEE---VKERDLVLPIFHRDCGECRDCKSSKSNTCSKF 124
            L   ++ GHE  G V   G   E    V  R   LP+    CG+   C           
Sbjct: 60  DLGADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLL--CGQGASC----------- 106

Query: 125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL-- 182
           G G  P  P                       + EY ++    ++++   + +  A L  
Sbjct: 107 GIGLSPEAP---------------------GGYAEYMLLSEALLLRVPDGLSMEDAALTE 145

Query: 183 -LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
            L+ G+      A + A +  G    + G G +GLAV    +      I+  D +PE+  
Sbjct: 146 PLAVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRA 200

Query: 242 IGKKFGITDFINPA 255
           +    G    ++PA
Sbjct: 201 LALAMGADIVVDPA 214

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 59/240 (24%), Positives = 85/240 (35%), Gaps = 51/240 (21%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           KA +    G P  L + E+    P   E+ +++    +   DV   +     P  PLP I
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLA-PPVRPLPFI 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G EA GVV +VG  V   K  D V                                + R
Sbjct: 61  PGSEAAGVVVAVGSGVTGFKVGDRVA---------------------------ALGGVGR 93

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
           DG                    + EY VV    +V +   +    A  L     T   A 
Sbjct: 94  DG-------------------GYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLAL 134

Query: 195 WKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           +  AG++ G TV + G  G VG A  + A+   A+ +  V  + EK E+ K+ G    IN
Sbjct: 135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS-SSEKLELLKELGADHVIN 193

Length = 326

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 33/233 (14%)

Query: 28  LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87
           L IEE  +  P A E+R+K+    +C SD   ++     P    P + GHE  GV+++VG
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHN--PFAKYPRVIGHEFFGVIDAVG 69

Query: 88  EYVEE--VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKG 145
           E V+   + ER  V P+    CG C  C   K N C+         + RDG         
Sbjct: 70  EGVDAARIGERVAVDPVI--SCGHCYPCSIGKPNVCTSL---VVLGVHRDG--------- 115

Query: 146 DVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS-CGVSTGVGAAWKVAGVEVGS 204
                      F+EY+VV   +  +I   I    A ++    ++  V       G     
Sbjct: 116 ----------GFSEYAVVPAKNAHRIPDAIADQYAVMVEPFTIAANVTGR---TGPTEQD 162

Query: 205 TVAIFGLGAVGLAVAEG-ARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
              I+G G VGL + +    +     +I  D   E+  + K+ G    IN A 
Sbjct: 163 VALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ 215

Length = 339

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 67.2 bits (165), Expect = 8e-13
 Identities = 48/166 (28%), Positives = 71/166 (42%), Gaps = 36/166 (21%)

Query: 19  AICRIPGKP-LVIEEIEVEPPKAWEIRIKILCTSLCHSDV--------TFWKSSTDLPKL 69
           AI   PGKP + + +I    P   E+ ++ L   +C +D         T       L   
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFL--- 59

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
               + GHEA+GVVE VG+    +   DLV+P   R  G+C +C            R  R
Sbjct: 60  ----VLGHEALGVVEEVGD-GSGLSPGDLVVPTVRRPPGKCLNC------------RIGR 102

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI 175
           P+    G    R +KG  +H F+      EY V D  ++VK+ P +
Sbjct: 103 PDFCETGEYTERGIKG--LHGFM-----REYFVDDPEYLVKVPPSL 141

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 2/98 (2%)

Query: 159 EYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
           E  VV    +V +   +P   A L +   +T +      A   +G  VA+ GLG VGL  
Sbjct: 56  ERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLLA 113

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
           A+ A+   A +++GVD +  + E+ +  G  D +   T
Sbjct: 114 AQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADT 151

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 64.9 bits (159), Expect = 4e-12
 Identities = 51/245 (20%), Positives = 82/245 (33%), Gaps = 60/245 (24%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAW--EIRIKILCTSLCHSDVTFWKSST-DLPKLPLPV 73
           KA      G P V+E  +V  P+    E+ +K+    +   D+   +        L LP+
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           I GH+  GVV +VG  V   K  D V                        FG        
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEV------------------------FG---MTPFT 94

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193
           R G                    + EY VV    +     ++    A      +      
Sbjct: 95  RGGA-------------------YAEYVVVPADELALKPANLSFEEA----AALPLAGLT 131

Query: 194 AW----KVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           AW    ++ G++ G TV I G  G VG    + A+  R +++I    +    +  +  G 
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAK-ARGARVIAT-ASAANADFLRSLGA 189

Query: 249 TDFIN 253
            + I+
Sbjct: 190 DEVID 194

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 62.2 bits (152), Expect = 3e-11
 Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 18/118 (15%)

Query: 25  GKPLVIEEIEVEPPKAWEIR------IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHE 78
           G P  +   +V  PK   I       ++I  T++C SD+  ++  T        ++ GHE
Sbjct: 7   GGPGNVAVEDVPDPK---IEHPTDAIVRITTTAICGSDLHMYRGRTGAEP---GLVLGHE 60

Query: 79  AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           A+G VE VG  VE +K  D V+  F+  CG CR+CK   +  C         N  R G
Sbjct: 61  AMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCL------TVNPGRAG 112

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 60.7 bits (147), Expect = 1e-10
 Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 22/214 (10%)

Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV-L 100
           ++ +KIL   +CHSD+   K+     + P+  + GHE VG+V  +G+ V++ KE D V +
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPI--VPGHEIVGIVTKLGKNVKKFKEGDRVGV 96

Query: 101 PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEY 160
            +    C  C  C     N C K    Y  ++  DGT               N   +++ 
Sbjct: 97  GVIVGSCKSCESCDQDLENYCPKMIFTYN-SIGHDGTK--------------NYGGYSDM 141

Query: 161 SVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGV-EVGSTVAIFGLGAVG-LAV 218
            VVD   V++   ++PL     L C   T V +  K  G+ E G  + + GLG +G +AV
Sbjct: 142 IVVDQHFVLRFPDNLPLDAGAPLLCAGIT-VYSPMKYYGMTEPGKHLGVAGLGGLGHVAV 200

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
             G        +I    N E   I  + G   F+
Sbjct: 201 KIGKAFGLKVTVISSSSNKEDEAI-NRLGADSFL 233

Length = 360

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
           AGV+ G TVA+FG G VGL  A  A L  AS++  VD  PE+ ++ +  G
Sbjct: 172 AGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG 221

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 27/192 (14%)

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLV-LPIFHR-------DCGECRDCKSSKSNTC-SKF 124
           + GHE VG V ++          D V L +  R        CG C  C+      C S  
Sbjct: 1   VLGHEIVGEVVALRG--GFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLR 58

Query: 125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLS 184
             G+   +          L G    H    +          T +V +   +P  +A    
Sbjct: 59  KYGHEA-LDSGW-----PLSGGYAEHCHLPAG---------TAIVPVPDDLPDAVAAPAG 103

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           C  +T V AA + AG   G  V + G G +GL  A  A    A++++  D +P++ E+  
Sbjct: 104 CATAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162

Query: 245 KFGITDFINPAT 256
            FG T    P  
Sbjct: 163 SFGATALAEPEV 174

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 56/206 (27%), Positives = 83/206 (40%), Gaps = 40/206 (19%)

Query: 28  LVIEEIEVEPPKAWEIRIKILCTSLCHSD---VTFWKSSTDLPKLPLPVIFGHEAVGVVE 84
           L +E+++   P   E+ I++    +   D   +   K        P+P I G E  GVVE
Sbjct: 14  LKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK------PMPHIPGAEFAGVVE 67

Query: 85  SVGEYVEEVKERDLVLPIFHRD-CGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFREL 143
            VG++V+ VK+ D V+ +++R   G C  C S     C     G    +  +G       
Sbjct: 68  EVGDHVKGVKKGDRVV-VYNRVFDGTCDMCLSGNEMLCRN---GGIIGVVSNG------- 116

Query: 144 KGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVG 203
                        + EY VV   ++ KI   I   +A  L     T   A  K AG+  G
Sbjct: 117 ------------GYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL-KTAGLGPG 163

Query: 204 STVAIF------GLGAVGLAVAEGAR 223
            TV +F      G+ AV LA   GA 
Sbjct: 164 ETVVVFGASGNTGIFAVQLAKMMGAE 189

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 55.8 bits (135), Expect = 5e-09
 Identities = 48/225 (21%), Positives = 85/225 (37%), Gaps = 48/225 (21%)

Query: 45  IKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIF 103
           ++I    +C SD+ +++        +  P++ GHE +G +        +  +   + P  
Sbjct: 32  VQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHSDSSGLKEGQTVAINP-- 89

Query: 104 HRDCGECRDCKSSKSNTCSK---FGRG-YRPNMPRDGTSRFRELKGDVIHHFLNISSFTE 159
            + CG C+ C S   N C+    FG   Y P++  DG                    FT 
Sbjct: 90  SKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHV--DG-------------------GFTR 128

Query: 160 YSVVDITHVVKITPHI---------PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG 210
           Y VVD    +               PL +A          + AA   AG   G  V + G
Sbjct: 129 YKVVDTAQCIPYPEKADEKVMAFAEPLAVA----------IHAA-HQAGDLQGKRVFVSG 177

Query: 211 LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA 255
           +G +G  +    +   A++I+  D++P    + ++ G    +NP 
Sbjct: 178 VGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQ 222

Length = 343

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 43/171 (25%), Positives = 55/171 (32%), Gaps = 45/171 (26%)

Query: 25  GKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE 84
           G  LV+ ++ V  P   E+ +K+   +L   D   WK          P I G +  G V 
Sbjct: 11  GGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAILGCDFAGTVV 67

Query: 85  SVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELK 144
            VG  V   K  D V        G               F  G  PN PR+G        
Sbjct: 68  EVGSGVTRFKVGDRV-------AG---------------FVHGGNPNDPRNG-------- 97

Query: 145 GDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
                      +F EY V D     KI  +I    A  L  G+ T    A 
Sbjct: 98  -----------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVT-AALAL 136

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 53/180 (29%), Positives = 72/180 (40%), Gaps = 38/180 (21%)

Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV-L 100
           ++ IK++   +CH+D+   K+  DL     P++ GHE VG V  VG  V +    D+V +
Sbjct: 36  DVVIKVIYCGICHTDLHQIKN--DLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGV 93

Query: 101 PIFHRDCGECRDCKSSKSNTCSK----FGRGYRPNMPRDGTSRFRELKGDVIHHFLNISS 156
            +    CGEC  CKS     C+K    +   Y    P  G                    
Sbjct: 94  GVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQG-------------------G 134

Query: 157 FTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGL 216
           F    VVD   VVKI   +    A  L C            AGV V S ++ FGL   GL
Sbjct: 135 FASAMVVDQKFVVKIPEGMAPEQAAPLLC------------AGVTVYSPLSHFGLKQSGL 182

Length = 357

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 53.5 bits (128), Expect = 3e-08
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 19/176 (10%)

Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV-L 100
           ++ +KIL   +CHSD+   K+     + P  +I GHE VG+   VG+ V + KE D V +
Sbjct: 33  DVTVKILFCGVCHSDLHTIKNHWGFSRYP--IIPGHEIVGIATKVGKNVTKFKEGDRVGV 90

Query: 101 PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEY 160
            +    C  C  C     N C K    Y  +   DGT               N   +++ 
Sbjct: 91  GVIIGSCQSCESCNQDLENYCPKVVFTYN-SRSSDGTR--------------NQGGYSDV 135

Query: 161 SVVDITHVVKITPHIPLGI-ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVG 215
            VVD   V+ I   +P    A LL  G++      +     E G  + + GLG +G
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLG 191

Length = 375

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 52.5 bits (127), Expect = 5e-08
 Identities = 58/243 (23%), Positives = 86/243 (35%), Gaps = 54/243 (22%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           KA +C+  G P  LV+EE+  EP    E+RI++    +   D+   +    + K PLP +
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQV-KPPLPFV 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G E  GVVE+VGE V   K                                        
Sbjct: 61  PGSEVAGVVEAVGEGVTGFKV--------------------------------------- 81

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
                     GD +        F E  VV    V  +   +    A  L     T   A 
Sbjct: 82  ----------GDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHAL 131

Query: 195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            + A ++ G TV + G  G VGLA  + A+   A ++I    + EK  + +  G    I+
Sbjct: 132 VRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVID 190

Query: 254 PAT 256
              
Sbjct: 191 YRD 193

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 50.0 bits (120), Expect = 6e-08
 Identities = 16/45 (35%), Positives = 24/45 (53%)

Query: 213 AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATC 257
            VGLA  + A+   A+++I VD + EK E+ K+ G    IN    
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDE 45

Length = 131

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 24  PGKPLVIEEIEVEPPKAW--EIRIKILCTSLCHSDVTFWKSSTDLP-------KLPLPVI 74
              PLV+E + +  P     E+ +++L   +  SD+        +        + PLP +
Sbjct: 8   EPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDL--------ITISGAYGSRPPLPAV 59

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIF 103
            G+E VGVV  VG  V  +     VLP+ 
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLPLG 88

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 58/239 (24%), Positives = 98/239 (41%), Gaps = 38/239 (15%)

Query: 26  KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK----SSTDLPKLPLPVIFGHEAVG 81
             L I+  ++ P    ++R+++    +C SDV + K    +   + +   P++ GHE  G
Sbjct: 27  NTLKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKE---PMVIGHECAG 83

Query: 82  VVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFR 141
           ++E VG  V+ +   D V       C  C  CK  + N C        P M    T    
Sbjct: 84  IIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLC--------PEMKFFATPPVH 135

Query: 142 -ELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL--GIACL-LSCGVSTGVGAAWKV 197
             L   V+H              D+    K+  ++ L  G  C  LS GV      A + 
Sbjct: 136 GSLANQVVHP------------ADL--CFKLPENVSLEEGAMCEPLSVGVH-----ACRR 176

Query: 198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
           A +   + V + G G +GL     AR   A +I+ VD++ E+  + K+ G  + +  +T
Sbjct: 177 ANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVST 235

Length = 364

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 6/82 (7%)

Query: 17 KAAICRIPGKPL-VIEEIEVEP--PKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLP 72
          +AA+    G P  V+E  EV    P A E+ ++   + + + D+  W    T   K  LP
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59

Query: 73 VIFGHEAVGVVESVGEYVEEVK 94
           I G EAVGVV++VGE V+ ++
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQ 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 49.0 bits (118), Expect = 7e-07
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87
          L  E++ V  P   E+ ++     +   D  F    + L  LPLP + G E  GVVE+VG
Sbjct: 14 LEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF---RSGLYPLPLPFVLGVEGAGVVEAVG 70

Query: 88 EYVEEVKERDLV 99
            V   K  D V
Sbjct: 71 PGVTGFKVGDRV 82

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 56/231 (24%), Positives = 80/231 (34%), Gaps = 40/231 (17%)

Query: 28  LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG 87
           L + E  V  P   E+ +++   SL + D+         P +  P+I   +  G V +VG
Sbjct: 15  LKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNG-RYPPPVKDPLIPLSDGAGEVVAVG 73

Query: 88  EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDV 147
           E V   K  D V+P F  +             T            P DG           
Sbjct: 74  EGVTRFKVGDRVVPTFFPNWL-------DGPPTAEDEASALGG--PIDGVLA-------- 116

Query: 148 IHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVA 207
                      EY V+    +V+   H+    A  L C   T   A + +  ++ G TV 
Sbjct: 117 -----------EYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVL 165

Query: 208 IFGLGAVGL-----AVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           + G G V L     A A GAR      +I    + EK E  K  G    IN
Sbjct: 166 VQGTGGVSLFALQFAKAAGAR------VIATSSSDEKLERAKALGADHVIN 210

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 3/86 (3%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +A      G P  L IEE+ V  P A E+ I++    L  +D   ++    +   PLP  
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADA-MFRRGAYIEPPPLPAR 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVL 100
            G+EA GVVE+VG  V      D V 
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVS 86

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 6/73 (8%)

Query: 22 RIPGK-PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-----LPVIF 75
          R+ GK  L +E+ E+      EI ++++  SLC S        +D  K+P      PVI 
Sbjct: 7  RMYGKGDLRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVIL 66

Query: 76 GHEAVGVVESVGE 88
          GHE  G +  VG+
Sbjct: 67 GHEFAGTILKVGK 79

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 3/96 (3%)

Query: 27  PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV 86
           PL   E  V  P   E+ +++    +C +D+    S  DLP     V  GHE VG V   
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHV--SEGDLPVHRPRVTPGHEVVGEVAGR 71

Query: 87  GEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTC 121
           G         D V +    R CG CR C+    N C
Sbjct: 72  GADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLC 107

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 61/240 (25%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +A      G P  L + ++ V  P   E+ +++  + +   D T+ ++       PLP +
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVD-TYIRAGAYPGLPPLPYV 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G +  GVVE+VGE V+ +K  D V                      +  G G R     
Sbjct: 61  PGSDGAGVVEAVGEGVDGLKVGDRVW--------------------LTNLGWGRRQ---- 96

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA- 193
            GT                     EY VV    +V +   +          G + G+ A 
Sbjct: 97  -GT-------------------AAEYVVVPADQLVPLPDGVS------FEQGAALGIPAL 130

Query: 194 -AWKV----AGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
            A++     AG + G TV + G  GAVG A  + AR   A ++I    + E  E+ ++ G
Sbjct: 131 TAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAG 189

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 53/244 (21%), Positives = 75/244 (30%), Gaps = 54/244 (22%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +A   +  G    L I E     PK  ++ IK+    +  +D    +     P     ++
Sbjct: 3   RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEIL 62

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G E  G VE VG  V+  KE D V+ +                      G GY      
Sbjct: 63  -GLEVAGYVEDVGSDVKRFKEGDRVMALLP--------------------GGGY------ 95

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
                                   EY+V    HV+ I        A  +     T     
Sbjct: 96  -----------------------AEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLL 132

Query: 195 WKVAGVEVGSTVAIF-GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
            K   V+ G +V I  G   VG A A+ A    A+ II    + EK +  KK      I 
Sbjct: 133 KKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTS-SEEKVDFCKKLAAIILIR 191

Query: 254 PATC 257
               
Sbjct: 192 YPDE 195

Length = 334

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 43.7 bits (104), Expect = 5e-05
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 22 RIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVG 81
           +  K L + E EV  P   E+ IK+    +  SD+ F K      K  LPV  G E  G
Sbjct: 12 PLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTK-ALPVPPGFEGSG 70

Query: 82 VVESVGE 88
           V + G 
Sbjct: 71 TVVAAGG 77

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.6 bits (101), Expect = 9e-05
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 10/98 (10%)

Query: 25  GKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE 84
           G  L +E++    P   E  +++L   +C++D+  +K        P P + GHE VG+VE
Sbjct: 9   GLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYY-----PFPGVPGHEFVGIVE 63

Query: 85  SVGEYVEEVKERDLVLPI-FHRDCGECRDCKSSKSNTC 121
              E   E+  + +V  I     CG C  C+      C
Sbjct: 64  EGPE--AELVGKRVVGEINIA--CGRCEYCRRGLYTHC 97

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 62/248 (25%), Positives = 83/248 (33%), Gaps = 67/248 (27%)

Query: 16  CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSD--VTFWKSSTDLPKLPL 71
            KA +   PG    L +EEIE+  P A E+ +K+    L   D  V  W           
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAW----SY 56

Query: 72  PVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN 131
           P + G +  GVV +VG  V   K  D V                            Y  +
Sbjct: 57  PHVPGVDGAGVVVAVGAKVTGWKVGDRVA---------------------------YHAS 89

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGV 191
           + R G                   SF EY+VVD   V+ +   +    A  L C   T  
Sbjct: 90  LARGG-------------------SFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAY 130

Query: 192 GAAWKVAGVEVGSTVAIFGL-GAVG-----LAVAEGARLNRASKIIGVDINPEKFEIGKK 245
            A +K   +E G T+ I G  G VG     LA   G R       +    +   FE  K 
Sbjct: 131 QALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLR-------VITTCSKRNFEYVKS 183

Query: 246 FGITDFIN 253
            G    I+
Sbjct: 184 LGADHVID 191

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
          KA +    G P    + E+    P   ++ +++  + +   D    +        PLP I
Sbjct: 2  KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAAR-PPLPAI 60

Query: 75 FGHEAVGVVESVGEYVEEVKERDLV 99
           G +  GVVE+VGE V   +  D V
Sbjct: 61 LGCDVAGVVEAVGEGVTRFRVGDEV 85

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 67/206 (32%)

Query: 28  LVIEEIEVEPPKAWEIRIKILCTSLCHSDVT----FWKSSTDLPKLPLPVIFGHEAVGVV 83
           L + E ++  P A E+ +K+  + +  +DV      +    D P  PLP   G++ VG V
Sbjct: 15  LKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLY---PDQP--PLPFTPGYDLVGRV 69

Query: 84  ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFREL 143
           +++G  V   +  D V  +                                 G + +   
Sbjct: 70  DALGSGVTGFEVGDRVAAL-----------------------------TRVGGNAEYI-- 98

Query: 144 KGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW----KVAG 199
                              +D  ++V +   +    A    C V   V  A+    + A 
Sbjct: 99  ------------------NLDAKYLVPVPEGVDAAEA---VCLVLNYV-TAYQMLHRAAK 136

Query: 200 VEVGSTVAIFGL-GAVGLAVAEGARL 224
           V  G  V I G  G VG A+ E A L
Sbjct: 137 VLTGQRVLIHGASGGVGQALLELALL 162

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 16  CKAAICRIPGKP---LVIEEIEVEPPKAW-EIRIKILCTSLCHSDV-TFWKSSTDLPKL- 69
            KA +    G+P   L +E  E+ PP    E+ +K+L   +  +D+          P   
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 70  -PLPVIFGHEAVGVVESVGEYVEEVKERDLVLP 101
              P + G+E VG V  VG  V+ +K  D V+P
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIP 93

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 68 KLPLPVIFGHEAVGVVESVGEYVEEVKERDLV 99
          KLPLP+  G+ +VG V  VG  V   K  D V
Sbjct: 17 KLPLPLPPGYSSVGRVVEVGSGVTGFKPGDRV 48

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|133444 cd01075, NAD_bind_Leu_Phe_Val_DH, NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 185 CGVSTGVGAAWKVA----GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK- 239
            GV  G+ AA +       +E G TVA+ GLG VG  +AE   L   +K+I  DIN E  
Sbjct: 7   YGVFLGMKAAAEHLLGTDSLE-GKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV 64

Query: 240 FEIGKKFGIT 249
               + FG T
Sbjct: 65  ARAAELFGAT 74

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 200

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 49/214 (22%), Positives = 67/214 (31%), Gaps = 65/214 (30%)

Query: 24  PGKPLVIEEIEVEPPKAW--EIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAV 80
             + L++ E+EV  P     E+ +K+   S+   D    +    L    P P I G +  
Sbjct: 8   SPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFA 67

Query: 81  GVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRF 140
           G V +VG  V   K  D V                        FGR         G    
Sbjct: 68  GEVVAVGSGVTRFKVGDEV------------------------FGRL---PPKGGGA--- 97

Query: 141 RELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI-----ACLLSCGVSTGVGAAW 195
                             EY V   + + K     P G+     A L   G+ T + A  
Sbjct: 98  ----------------LAEYVVAPESGLAK----KPEGVSFEEAAALPVAGL-TALQALR 136

Query: 196 KVAGVEVGSTVAIFGL-GAVG-----LAVAEGAR 223
               V+ G  V I G  G VG     +A A GA 
Sbjct: 137 DAGKVKPGQRVLINGASGGVGTFAVQIAKALGAH 170

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
          KA +   PG P  L + EI +  PK   + I++    L  S++   +  +  P +  P +
Sbjct: 2  KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHS--PSVKFPRV 59

Query: 75 FGHEAVGVVES 85
           G EAVG VE 
Sbjct: 60 LGIEAVGEVEE 70

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	267
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.98
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.98
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.98
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.98
PLN02702	364	L-idonate 5-dehydrogenase	99.98
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.98
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.98
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.98
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.98
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.98
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.97
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.97
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.97
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.97
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.97
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.97
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.97
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.97
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.97
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.97
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.97
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.97
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.97
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.97
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.96
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.96
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.96
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.96
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.96
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.96
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.96
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.96
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.96
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.95
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.95
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.95
PTZ00354	334	alcohol dehydrogenase; Provisional	99.95
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.95
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.95
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.95
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.95
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.95
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.95
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.95
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.94
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.94
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.94
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.94
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.94
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.94
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.94
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.93
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.93
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.92
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.92
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.92
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.91
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.91
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.91
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.91
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.9
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.9
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.89
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.88
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.79
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.76
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.57
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	98.27
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.17
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.92
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.52
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.5
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.29
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.14
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.91
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.89
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.78
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.7
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.66
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.56
PLN02494	477	adenosylhomocysteinase	96.18
PRK04148	134	hypothetical protein; Provisional	95.85
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.85
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.63
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.58
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.51
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.5
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.2
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.17
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	95.16
PRK08017	256	oxidoreductase; Provisional	95.15
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.12
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.08
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.98
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.9
PRK05993	277	short chain dehydrogenase; Provisional	94.84
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	94.78
PRK08324	681	short chain dehydrogenase; Validated	94.69
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.63
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	94.56
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.18
PRK05693	274	short chain dehydrogenase; Provisional	94.17
COG0300	265	DltE Short-chain dehydrogenases of various substra	94.11
PRK12548	289	shikimate 5-dehydrogenase; Provisional	94.1
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	93.94
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	93.94
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	93.89
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	93.86
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	93.85
PRK06949	258	short chain dehydrogenase; Provisional	93.84
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	93.79
PRK05872	296	short chain dehydrogenase; Provisional	93.54
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.52
PRK07814	263	short chain dehydrogenase; Provisional	93.51
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.51
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	93.42
PRK06057	255	short chain dehydrogenase; Provisional	93.41
PRK08339	263	short chain dehydrogenase; Provisional	93.34
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	93.32
PRK07060	245	short chain dehydrogenase; Provisional	93.31
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.3
PRK12829	264	short chain dehydrogenase; Provisional	93.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.26
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	93.26
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	93.24
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	93.23
PRK07523	255	gluconate 5-dehydrogenase; Provisional	93.22
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.17
PRK06182	273	short chain dehydrogenase; Validated	93.17
PRK05867	253	short chain dehydrogenase; Provisional	93.13
PRK13940	414	glutamyl-tRNA reductase; Provisional	93.05
PRK07326	237	short chain dehydrogenase; Provisional	93.05
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	93.02
PRK05866	293	short chain dehydrogenase; Provisional	92.91
PLN02780	320	ketoreductase/ oxidoreductase	92.9
PLN03209	576	translocon at the inner envelope of chloroplast su	92.9
PRK07831	262	short chain dehydrogenase; Provisional	92.9
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	92.84
PRK06139	330	short chain dehydrogenase; Provisional	92.81
PRK07890	258	short chain dehydrogenase; Provisional	92.77
PRK07576	264	short chain dehydrogenase; Provisional	92.75
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.73
PRK12828	239	short chain dehydrogenase; Provisional	92.73
PRK07062	265	short chain dehydrogenase; Provisional	92.7
PRK06500	249	short chain dehydrogenase; Provisional	92.64
PRK07035	252	short chain dehydrogenase; Provisional	92.6
PRK06180	277	short chain dehydrogenase; Provisional	92.58
PRK08703	239	short chain dehydrogenase; Provisional	92.58
PRK07063	260	short chain dehydrogenase; Provisional	92.57
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.51
PRK07825	273	short chain dehydrogenase; Provisional	92.48
PRK09072	263	short chain dehydrogenase; Provisional	92.48
PRK08265	261	short chain dehydrogenase; Provisional	92.34
PRK09291	257	short chain dehydrogenase; Provisional	92.32
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	92.31
PRK06194	287	hypothetical protein; Provisional	92.28
PRK07478	254	short chain dehydrogenase; Provisional	92.25
PRK05854	313	short chain dehydrogenase; Provisional	92.25
PRK07677	252	short chain dehydrogenase; Provisional	92.24
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	92.19
PRK06125	259	short chain dehydrogenase; Provisional	92.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	92.19
PRK06841	255	short chain dehydrogenase; Provisional	92.16
PRK06172	253	short chain dehydrogenase; Provisional	92.14
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	92.13
PRK07454	241	short chain dehydrogenase; Provisional	92.13
PRK06101	240	short chain dehydrogenase; Provisional	92.11
PRK06196	315	oxidoreductase; Provisional	92.1
PRK09186	256	flagellin modification protein A; Provisional	92.03
PRK12939	250	short chain dehydrogenase; Provisional	92.01
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.96
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	91.89
PRK08085	254	gluconate 5-dehydrogenase; Provisional	91.79
PRK05875	276	short chain dehydrogenase; Provisional	91.75
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	91.74
PRK09242	257	tropinone reductase; Provisional	91.73
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.71
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	91.7
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.68
PRK07109	334	short chain dehydrogenase; Provisional	91.67
PRK06124	256	gluconate 5-dehydrogenase; Provisional	91.65
PRK07453	322	protochlorophyllide oxidoreductase; Validated	91.6
PRK07067	257	sorbitol dehydrogenase; Provisional	91.58
PRK08177	225	short chain dehydrogenase; Provisional	91.52
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	91.46
PRK06181	263	short chain dehydrogenase; Provisional	91.4
PRK06138	252	short chain dehydrogenase; Provisional	91.38
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	91.37
PRK07774	250	short chain dehydrogenase; Provisional	91.33
PRK06197	306	short chain dehydrogenase; Provisional	91.33
PRK08628	258	short chain dehydrogenase; Provisional	91.28
PRK05876	275	short chain dehydrogenase; Provisional	91.28
PRK08643	256	acetoin reductase; Validated	91.28
PLN00203	519	glutamyl-tRNA reductase	91.27
PRK08264	238	short chain dehydrogenase; Validated	91.26
PRK05717	255	oxidoreductase; Validated	91.26
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	91.21
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	91.15
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	91.07
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.05
PRK10669	558	putative cation:proton antiport protein; Provision	90.99
PRK08267	260	short chain dehydrogenase; Provisional	90.98
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	90.95
PRK08226	263	short chain dehydrogenase; Provisional	90.95
PRK08277	278	D-mannonate oxidoreductase; Provisional	90.93
PRK12742	237	oxidoreductase; Provisional	90.9
PRK07904	253	short chain dehydrogenase; Provisional	90.85
PRK07024	257	short chain dehydrogenase; Provisional	90.83
PRK06914	280	short chain dehydrogenase; Provisional	90.82
PRK10538	248	malonic semialdehyde reductase; Provisional	90.66
PRK08862	227	short chain dehydrogenase; Provisional	90.6
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	90.54
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.51
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	90.45
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.42
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	90.42
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.33
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	90.3
PLN02253	280	xanthoxin dehydrogenase	90.26
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.18
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.16
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	90.12
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	90.09
PRK07074	257	short chain dehydrogenase; Provisional	90.07
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	90.07
PRK08589	272	short chain dehydrogenase; Validated	90.03
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	90.02
PRK06198	260	short chain dehydrogenase; Provisional	89.99
PRK07102	243	short chain dehydrogenase; Provisional	89.99
COG0569	225	TrkA K+ transport systems, NAD-binding component [	89.94
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.92
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	89.9
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.9
PRK08251	248	short chain dehydrogenase; Provisional	89.88
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	89.79
PRK03562	621	glutathione-regulated potassium-efflux system prot	89.75
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.74
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	89.64
PRK07832	272	short chain dehydrogenase; Provisional	89.61
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.57
PRK06953	222	short chain dehydrogenase; Provisional	89.44
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	89.4
PRK07097	265	gluconate 5-dehydrogenase; Provisional	89.26
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	89.24
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	89.19
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.12
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	89.12
PRK08340	259	glucose-1-dehydrogenase; Provisional	89.1
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.01
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	88.97
PRK06482	276	short chain dehydrogenase; Provisional	88.89
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	88.83
CHL00194	317	ycf39 Ycf39; Provisional	88.79
PRK08263	275	short chain dehydrogenase; Provisional	88.78
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	88.71
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	88.65
KOG0725	270	consensus Reductases with broad range of substrate	88.64
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.59
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	88.57
PRK06484	520	short chain dehydrogenase; Validated	88.54
PRK12814	652	putative NADPH-dependent glutamate synthase small	88.51
PRK07856	252	short chain dehydrogenase; Provisional	88.5
PRK13984	604	putative oxidoreductase; Provisional	88.49
PRK05884	223	short chain dehydrogenase; Provisional	88.38
PRK06940	275	short chain dehydrogenase; Provisional	88.37
PRK07417	279	arogenate dehydrogenase; Reviewed	88.24
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.17
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.16
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	88.09
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	88.08
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	88.08
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	88.05
PRK07806	248	short chain dehydrogenase; Provisional	88.0
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	87.93
PRK07775	274	short chain dehydrogenase; Provisional	87.91
PRK06523	260	short chain dehydrogenase; Provisional	87.87
PRK06720	169	hypothetical protein; Provisional	87.81
PLN02896	353	cinnamyl-alcohol dehydrogenase	87.78
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	87.67
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	87.62
PRK08303	305	short chain dehydrogenase; Provisional	87.6
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	87.57
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	87.56
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	87.54
PRK06398	258	aldose dehydrogenase; Validated	87.54
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	87.42
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	87.35
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	87.33
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	87.33
PRK13403	335	ketol-acid reductoisomerase; Provisional	87.29
PRK06484	520	short chain dehydrogenase; Validated	87.29
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	87.22
PRK12367	245	short chain dehydrogenase; Provisional	87.19
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	87.14
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	87.14
PRK07791	286	short chain dehydrogenase; Provisional	87.13
PRK07574	385	formate dehydrogenase; Provisional	87.13
PRK06179	270	short chain dehydrogenase; Provisional	87.11
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	87.08
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	87.04
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	87.03
PRK06753	373	hypothetical protein; Provisional	87.0
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	86.97
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	86.89
PLN02686	367	cinnamoyl-CoA reductase	86.88
PLN03139	386	formate dehydrogenase; Provisional	86.81
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	86.76
PRK05650	270	short chain dehydrogenase; Provisional	86.74
PRK06114	254	short chain dehydrogenase; Provisional	86.72
PRK09135	249	pteridine reductase; Provisional	86.65
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.6
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	86.6
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	86.58
PLN02928	347	oxidoreductase family protein	86.52
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.49
PRK09496	453	trkA potassium transporter peripheral membrane com	86.43
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	86.38
PRK06719	157	precorrin-2 dehydrogenase; Validated	86.33
PRK06847	375	hypothetical protein; Provisional	86.32
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	86.31
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.31
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.31
PRK14967	223	putative methyltransferase; Provisional	86.29
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	86.23
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	86.23
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	86.11
TIGR02415	254	23BDH acetoin reductases. One member of this famil	86.09
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	86.03
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	86.0
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	85.83
PLN02583	297	cinnamoyl-CoA reductase	85.79
PRK08936	261	glucose-1-dehydrogenase; Provisional	85.78
PRK07577	234	short chain dehydrogenase; Provisional	85.74
PRK06483	236	dihydromonapterin reductase; Provisional	85.73
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	85.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	85.69
PRK08163	396	salicylate hydroxylase; Provisional	85.63
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	85.57
PRK14982	340	acyl-ACP reductase; Provisional	85.51
PRK07045	388	putative monooxygenase; Reviewed	85.5
KOG1208	314	consensus Dehydrogenases with different specificit	85.47
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	85.39
PLN02778	298	3,5-epimerase/4-reductase	85.27
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	85.26
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	85.24
PRK13243	333	glyoxylate reductase; Reviewed	85.23
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	85.05
PRK07236	386	hypothetical protein; Provisional	85.02
PRK07190	487	hypothetical protein; Provisional	85.0
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	85.0
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	84.97
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	84.96
PLN02650	351	dihydroflavonol-4-reductase	84.91
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	84.87
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	84.87
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	84.86
PRK06475	400	salicylate hydroxylase; Provisional	84.82
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	84.81
KOG1252	362	consensus Cystathionine beta-synthase and related	84.79
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	84.74
PRK06924	251	short chain dehydrogenase; Provisional	84.65
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	84.64
PRK07340	304	ornithine cyclodeaminase; Validated	84.6
PRK06184	502	hypothetical protein; Provisional	84.52
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	84.51
PRK08328	231	hypothetical protein; Provisional	84.47
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	84.45
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	84.41
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	84.4
PRK12747	252	short chain dehydrogenase; Provisional	84.24
PRK12831	464	putative oxidoreductase; Provisional	84.21
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	84.2
PRK12480	330	D-lactate dehydrogenase; Provisional	84.16
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	84.14
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	84.1
PRK12746	254	short chain dehydrogenase; Provisional	84.06
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	84.06
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	84.01
PRK12743	256	oxidoreductase; Provisional	84.01
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	83.97
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.95
PRK08278	273	short chain dehydrogenase; Provisional	83.95
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	83.91
PRK06141	314	ornithine cyclodeaminase; Validated	83.88
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	83.85
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	83.78
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	83.75
PRK08244	493	hypothetical protein; Provisional	83.75
PRK07201	657	short chain dehydrogenase; Provisional	83.74
PRK05855	582	short chain dehydrogenase; Validated	83.71
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	83.68
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	83.67
PRK09496	453	trkA potassium transporter peripheral membrane com	83.66
PRK05599	246	hypothetical protein; Provisional	83.64
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.6
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	83.59
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	83.49
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	83.45
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	83.37
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.36
PRK08013	400	oxidoreductase; Provisional	83.34
PRK08219	227	short chain dehydrogenase; Provisional	83.16
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	83.13
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	83.11
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.06
PRK07069	251	short chain dehydrogenase; Validated	83.05
PRK07538	413	hypothetical protein; Provisional	83.05
PRK07985	294	oxidoreductase; Provisional	83.02
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	83.01
PRK08618	325	ornithine cyclodeaminase; Validated	83.01
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	82.95
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	82.87
PRK12937	245	short chain dehydrogenase; Provisional	82.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	82.82
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	82.79
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	82.53
PLN02256	304	arogenate dehydrogenase	82.53
PRK05868	372	hypothetical protein; Validated	82.45
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	82.39
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	82.35
PRK09126	392	hypothetical protein; Provisional	82.33
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	82.32
PRK08507	275	prephenate dehydrogenase; Validated	82.2
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	82.16
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	82.08
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	82.05
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	82.04
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	81.96
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	81.95
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	81.9
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	81.89
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.84
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	81.78
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	81.78
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	81.77
PRK06128	300	oxidoreductase; Provisional	81.7
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	81.68
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	81.66
PRK12779	944	putative bifunctional glutamate synthase subunit b	81.65
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.65

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.6e-53  Score=380.90  Aligned_cols=225  Identities=36%  Similarity=0.521  Sum_probs=211.8

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |++|||+++.++++|+++++++.|.|+++||||+|+++|||++|+|.++|.++..  .+|++||||.+|+|+++|++|++
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~--~~P~ipGHEivG~V~~vG~~V~~   78 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP--KLPLIPGHEIVGTVVEVGEGVTG   78 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCC--CCCccCCcceEEEEEEecCCCcc
Confidence            5789999999999999999999999999999999999999999999999999987  79999999999999999999999


Q ss_pred             cCCCCEEEe-eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLP-IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      ||+||||.+ ....+|++|+||++|++|+|++...   .|+..+|                   +|+||+++|+++++++
T Consensus        79 ~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~i  136 (339)
T COG1064          79 LKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKI  136 (339)
T ss_pred             CCCCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEEC
Confidence            999999988 7789999999999999999998665   6666776                   9999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      |+++++++||.+.|+.+|.|+++ +.+++++|++|+|.|+|++|++++|+|+++|+ +|++++++++|++.+++||++++
T Consensus       137 P~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~  214 (339)
T COG1064         137 PEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHV  214 (339)
T ss_pred             CCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEE
Confidence            99999999999999999999975 56999999999999999999999999999997 99999999999999999999999


Q ss_pred             ECCCCCCccccccc
Q 024496          252 INPATCGDKTVSQV  265 (267)
Q Consensus       252 i~~~~~~~~~~~~v  265 (267)
                      +|.++  +++.+++
T Consensus       215 i~~~~--~~~~~~~  226 (339)
T COG1064         215 INSSD--SDALEAV  226 (339)
T ss_pred             EEcCC--chhhHHh
Confidence            99886  6665554

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2.6e-49  Score=348.29  Aligned_cols=239  Identities=46%  Similarity=0.802  Sum_probs=232.6

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |++||.+++++++||++++++.+.|+++|||||+.++|+||+|.+.+.|..+.   .+|.++|||++|+|++||+.|+++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~---~~P~vLGHEgAGiVe~VG~gVt~v   77 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE---GFPAVLGHEGAGIVEAVGEGVTSV   77 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC---CCceecccccccEEEEecCCcccc
Confidence            57899999999999999999999999999999999999999999999999887   499999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +|||.|+..+...||+|.+|.+|.+|+|.....+.+.|...||+.|+. .++....||.+.++|+||.+++...++++++
T Consensus        78 kpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~  156 (366)
T COG1062          78 KPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDP  156 (366)
T ss_pred             CCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCC
Confidence            999999999999999999999999999999999999999999999997 7888899999999999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +.+++.++++.|.+.|.+.++.+.+++++|++|.|+|.|++|++++|-|+..|+.+||++|.+++|++++++||+++++|
T Consensus       157 ~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn  236 (366)
T COG1062         157 DAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVN  236 (366)
T ss_pred             CCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       237 ~~~  239 (366)
T COG1062         237 PKE  239 (366)
T ss_pred             chh
Confidence            988

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=2.3e-48  Score=337.79  Aligned_cols=245  Identities=60%  Similarity=0.962  Sum_probs=234.8

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +..++.+|||.+.+++++||.++++..++|+..||+||+.++++||+|.+.++|..+..  .+|.++|||++|+|+.+|.
T Consensus         1 t~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~--~fP~IlGHEaaGIVESvGe   78 (375)
T KOG0022|consen    1 TAGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEG--LFPVILGHEAAGIVESVGE   78 (375)
T ss_pred             CCCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccc--cCceEecccceeEEEEecC
Confidence            35688999999999999999999999999999999999999999999999999987655  7999999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CCCccccccCCceecccccccceeeeEEeeccc
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      .|+++++||+|+......|++|.+|+++..|+|.+...+.+.+... ||+.|+- -+|+.++||.+..+|+||.+++...
T Consensus        79 gV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~  157 (375)
T KOG0022|consen   79 GVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDIS  157 (375)
T ss_pred             CccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecce
Confidence            9999999999999999999999999999999999998887666664 9999997 8899999999999999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +++|+++.+++.++++.|.++|+|.|++..+++++|+++.|+|.|.+|+++++-||+.|+.+||++|.|++|.+++++||
T Consensus       158 v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fG  237 (375)
T KOG0022|consen  158 VAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFG  237 (375)
T ss_pred             eEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEECCCC
Q 024496          248 ITDFINPAT  256 (267)
Q Consensus       248 ~~~vi~~~~  256 (267)
                      +++++|+++
T Consensus       238 aTe~iNp~d  246 (375)
T KOG0022|consen  238 ATEFINPKD  246 (375)
T ss_pred             cceecChhh
Confidence            999999986

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.9e-48  Score=337.65  Aligned_cols=239  Identities=28%  Similarity=0.418  Sum_probs=214.9

Q ss_pred             CCCcCccccceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEE
Q 024496            7 SPKAGKVIRCKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE   84 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~   84 (267)
                      |++...|.+++++.+..+++  ++++.+++.|+|+++||+|+|+++|||++|+|.++|+++..  ++|.++|||.+|+|+
T Consensus         1 ~~~~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s--~~PlV~GHEiaG~Vv   78 (360)
T KOG0023|consen    1 MSSMSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLS--KYPLVPGHEIAGVVV   78 (360)
T ss_pred             CCcccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcc--cCCccCCceeeEEEE
Confidence            45567789999999999998  46779999999999999999999999999999999999985  899999999999999


Q ss_pred             EecCCCcccCCCCEE-EeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           85 SVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        85 ~vG~~v~~~~~Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      ++|++|++|++|||| +....-+|..|++|+++.+++|++....+ .|...||+..+              |+|++|+++
T Consensus        79 kvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~-~g~~~DGt~~~--------------ggf~~~~~v  143 (360)
T KOG0023|consen   79 KVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTY-NGVYHDGTITQ--------------GGFQEYAVV  143 (360)
T ss_pred             EECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEec-cccccCCCCcc--------------CccceeEEE
Confidence            999999999999999 55667889999999999999999766554 88888886555              789999999


Q ss_pred             eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH
Q 024496          164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP-EKFEI  242 (267)
Q Consensus       164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~  242 (267)
                      ++.++++||++++.+.||.+.|+..|.|.+ ....++.+|++|.|.|+|++|.+++|+|++||. +|++++++. .|.+.
T Consensus       144 ~~~~a~kIP~~~pl~~aAPlLCaGITvYsp-Lk~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea  221 (360)
T KOG0023|consen  144 DEVFAIKIPENLPLASAAPLLCAGITVYSP-LKRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEA  221 (360)
T ss_pred             eeeeEEECCCCCChhhccchhhcceEEeeh-hHHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHH
Confidence            999999999999999999999999999996 567889999999999997799999999999999 999998887 66666


Q ss_pred             HHHcCCCEEECCCCCCccccccc
Q 024496          243 GKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       243 ~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      ++.||++.+++..+ .+|+++++
T Consensus       222 ~~~LGAd~fv~~~~-d~d~~~~~  243 (360)
T KOG0023|consen  222 IKSLGADVFVDSTE-DPDIMKAI  243 (360)
T ss_pred             HHhcCcceeEEecC-CHHHHHHH
Confidence            77899999999984 16776654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.7e-45  Score=319.60  Aligned_cols=218  Identities=28%  Similarity=0.417  Sum_probs=200.1

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .+|+|++++++++ +++++.|.|++ .|+||+|++.++|||++|+|.+..... .+..+.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4789999999999 99999999987 999999999999999999999975443 33346899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|+||||++.+..+|+.|++|++|++|.|+...+   .+.. .+                   |++++|++++++++++
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~-------------------G~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVD-------------------GTLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcC-------------------CceEEEEEechHheee
Confidence            99999999999999999999999999999999887   3333 33                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +||+++++++|++. ++++++|| -+++++++|++|||+|+|++|+++...|+++|+.+|++++-.+.|++++++||++.
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            99999999999988 89999996 57899999999999999999999999999999999999999999999999999998


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      +.+...
T Consensus       218 ~~~~~~  223 (354)
T KOG0024|consen  218 TDPSSH  223 (354)
T ss_pred             Eeeccc
Confidence            887766

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2e-41  Score=312.87  Aligned_cols=246  Identities=60%  Similarity=0.992  Sum_probs=206.0

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +.++|++||++++..+++++.++++|.|.|+++||+|||++++||++|++.+.|..... ..+|.++|||++|+|+++|+
T Consensus         4 ~~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~-~~~p~i~GhE~~G~V~~vG~   82 (381)
T PLN02740          4 TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQ-RAYPRILGHEAAGIVESVGE   82 (381)
T ss_pred             ccccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCccc-CCCCccccccceEEEEEeCC
Confidence            45689999999999998778999999999999999999999999999999998876432 15789999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCC-CCCCCCCcccc--ccCCceecccccccceeeeEEeec
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP-NMPRDGTSRFR--ELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~-g~~~~g~~~~~--~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      ++++|++||||++.+..+|+.|.+|+.+.+++|++....... ....+|..++.  .. +....+++..|+|+||+++|.
T Consensus        83 ~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~G~~aey~~v~~  161 (381)
T PLN02740         83 GVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGD-GQPIYHFLNTSTFTEYTVLDS  161 (381)
T ss_pred             CCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccC-CCcccccccCccceeEEEEeh
Confidence            999999999999999999999999999999999885431000 00000000000  00 000011223469999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++++|+++++++++.+.+.+.++|+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|++.+++
T Consensus       162 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        162 ACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             HHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            99999999999999999999999999987788899999999999999999999999999999779999999999999999


Q ss_pred             cCCCEEECCCC
Q 024496          246 FGITDFINPAT  256 (267)
Q Consensus       246 ~G~~~vi~~~~  256 (267)
                      +|+++++|+++
T Consensus       242 ~Ga~~~i~~~~  252 (381)
T PLN02740        242 MGITDFINPKD  252 (381)
T ss_pred             cCCcEEEeccc
Confidence            99999999876

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=6.2e-41  Score=308.31  Aligned_cols=238  Identities=46%  Similarity=0.819  Sum_probs=203.4

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      ||++++..++++++++++|.|+|.++||+|||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++|++
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~   79 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEG--VFPVILGHEGAGIVEAVGEGVTSVKV   79 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCC--CCCeeeccccEEEEEEECCCCccCCC
Confidence            8999999988889999999999999999999999999999999998876543  67999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||||++.+..+|++|.+|+.++.++|.+.....+.|...+|..++.. .|....++.+.|+|+||+++|.++++++|+++
T Consensus        80 GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l  158 (368)
T TIGR02818        80 GDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSK-DGQPIYHYMGCSTFSEYTVVPEISLAKINPAA  158 (368)
T ss_pred             CCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCcccccc-CCCcccccccCccceeeEEechhheEECCCCC
Confidence            99999988899999999999999999875432222333232211100 01011122224699999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++++.+++.++|+++.+..++++|++|||+|+|++|++++|+|+++|+.+|+++++++++++.++++|+++++|++
T Consensus       159 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~  238 (368)
T TIGR02818       159 PLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPN  238 (368)
T ss_pred             CHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEccc
Confidence            99999999999999999887888999999999999999999999999999997899999999999999999999999976


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       239 ~  239 (368)
T TIGR02818       239 D  239 (368)
T ss_pred             c
Confidence            4

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=4.4e-40  Score=302.51  Aligned_cols=240  Identities=55%  Similarity=0.896  Sum_probs=205.2

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      .+|||+++..++++++++++|.|.|+++||+||+++++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~--~~p~v~G~E~~G~V~~vG~~v~~~   78 (368)
T cd08300           1 ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEG--LFPVILGHEGAGIVESVGEGVTSV   78 (368)
T ss_pred             CcceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccC--CCCceeccceeEEEEEeCCCCccC
Confidence            378999999888889999999999999999999999999999999998876544  679999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+..+..+|+.|.+|++++++.|.+.....+.|...+|..++.. .|....++.+.|+|+||+.++.+.++++|+
T Consensus        79 ~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  157 (368)
T cd08300          79 KPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSC-KGKPIYHFMGTSTFSEYTVVAEISVAKINP  157 (368)
T ss_pred             CCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCcccccc-CCcccccccccccceeEEEEchhceEeCCC
Confidence            9999999988899999999999999999875432222333333222110 011111222346999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++++.+.+++.++|+++.+...+++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|+++++|
T Consensus       158 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~  237 (368)
T cd08300         158 EAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVN  237 (368)
T ss_pred             CCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEc
Confidence            99999999999999999998777889999999999999999999999999999977999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       238 ~~~  240 (368)
T cd08300         238 PKD  240 (368)
T ss_pred             ccc
Confidence            876

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=9.5e-40  Score=300.18  Aligned_cols=240  Identities=59%  Similarity=1.000  Sum_probs=204.0

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ++|||+++.+++++++++++|.|.|+++||+||+.+++||++|++.+.|..+..  .+|.++|||++|+|+++|+++++|
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~   78 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTP--LFPRILGHEAAGIVESVGEGVTDL   78 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCC--CCCcccccccceEEEEeCCCCCcc
Confidence            489999999988889999999999999999999999999999999998876543  678999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCC-CccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG-TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ++||||++.+..+|++|++|+.+.++.|.+.......|....+ ..++. -.|....++.+.|+|+||++++..+++++|
T Consensus        79 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  157 (369)
T cd08301          79 KPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKIN  157 (369)
T ss_pred             ccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECC
Confidence            9999999999999999999999999999875432111221110 00000 001111223334699999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++++++.+.+.++|+++++..++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++.++++|++.++
T Consensus       158 ~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i  237 (369)
T cd08301         158 PEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFV  237 (369)
T ss_pred             CCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEE
Confidence            99999999999999999999888888999999999999999999999999999997899999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      ++++
T Consensus       238 ~~~~  241 (369)
T cd08301         238 NPKD  241 (369)
T ss_pred             cccc
Confidence            8865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=4e-40  Score=303.11  Aligned_cols=243  Identities=40%  Similarity=0.690  Sum_probs=202.8

Q ss_pred             ceeEEeecCCC--------CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           16 CKAAICRIPGK--------PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        16 ~~a~~~~~~~~--------~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      |||+++.+++.        .++++++|.|.|+++||+|||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~---~~p~i~GhE~~G~V~~vG   77 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR---PLPMALGHEAAGVVVEVG   77 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC---CCCccCCccceeEEEEeC
Confidence            79999998763        3889999999999999999999999999999999887542   578999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +++++|++||||++.+...|+.|.+|++|.+++|.+.......|...+|..++....+.. .+..+.|+|+||++++..+
T Consensus        78 ~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~-~~~~g~G~~aey~~v~~~~  156 (371)
T cd08281          78 EGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEI-NHHLGVSAFAEYAVVSRRS  156 (371)
T ss_pred             CCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccc-ccccCcccceeeEEecccc
Confidence            999999999999988888999999999999999987643222232222211110000000 0111236999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      ++++|+++++++|+.+.+.+.+||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|
T Consensus       157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~G  236 (371)
T cd08281         157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELG  236 (371)
T ss_pred             eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcC
Confidence            99999999999999999899999998778889999999999999999999999999999977999999999999999999


Q ss_pred             CCEEECCCCCCcccccc
Q 024496          248 ITDFINPATCGDKTVSQ  264 (267)
Q Consensus       248 ~~~vi~~~~~~~~~~~~  264 (267)
                      +++++++++  +++.++
T Consensus       237 a~~~i~~~~--~~~~~~  251 (371)
T cd08281         237 ATATVNAGD--PNAVEQ  251 (371)
T ss_pred             CceEeCCCc--hhHHHH
Confidence            999999987  655443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=9.1e-40  Score=299.26  Aligned_cols=234  Identities=36%  Similarity=0.608  Sum_probs=200.9

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      +|||+++.+++++++++++|.|.|+++||+|||.+++||++|++.+.|..+.   .+|.++|||++|+|+++|+++++|+
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~---~~p~i~G~e~~G~V~~vG~~v~~~~   77 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND---EFPFLLGHEAAGVVEAVGEGVTDVA   77 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc---cCCcccccceEEEEEEeCCCCcccC
Confidence            6999999999988999999999999999999999999999999999886542   5789999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY-RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||+|++.+...|+.|++|..+.+++|....... ..++ .+|.         ..+...+.|+|+||+.++.++++++|+
T Consensus        78 ~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g~---------~~~~~~~~G~~aey~~v~~~~~~~ip~  147 (358)
T TIGR03451        78 PGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDGT---------ELSPALGIGAFAEKTLVHAGQCTKVDP  147 (358)
T ss_pred             CCCEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccCc---------ccccccccccccceEEEehhheEECCC
Confidence            9999999999999999999999999997532110 0000 0010         000001236999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++++++.+.+.++|+++.+...+++|++|||+|+|++|++++|+|+++|+++|+++++++++++.++++|+++++|
T Consensus       148 ~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~  227 (358)
T TIGR03451       148 AADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVN  227 (358)
T ss_pred             CCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEc
Confidence            99999999999899999987777788999999999999999999999999999967999999999999999999999999


Q ss_pred             CCCCCccccc
Q 024496          254 PATCGDKTVS  263 (267)
Q Consensus       254 ~~~~~~~~~~  263 (267)
                      +++  +++.+
T Consensus       228 ~~~--~~~~~  235 (358)
T TIGR03451       228 SSG--TDPVE  235 (358)
T ss_pred             CCC--cCHHH
Confidence            877  55543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=4.6e-39  Score=291.84  Aligned_cols=217  Identities=29%  Similarity=0.478  Sum_probs=194.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++..++. ++++++|.|.|+++||+||+.+++||++|++.+.+.+.... ..|.++|||++|+|+++|+++++|++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~   78 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPA-YQGVIPGHEPAGVVVAVGPGVTHFRV   78 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccC-CCCceeccCceEEEEEECCCCccCCC
Confidence            79999998766 99999999999999999999999999999998877643221 45899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+..+...|+.|++|+.|++++|.+...  ..|...+|                   +|+||+++|.++++++|+++
T Consensus        79 Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~  137 (339)
T cd08239          79 GDRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDL  137 (339)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCC
Confidence            9999999999999999999999999976543  23333344                   99999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++|+++.+++.+||+++ ...++++|++|||+|+|++|++++|+|+++|+++|++++++++++++++++|++++++++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~  216 (339)
T cd08239         138 SFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSG  216 (339)
T ss_pred             CHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCC
Confidence            9999999999999999975 567899999999999999999999999999995599999999999999999999999987


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       217 ~  217 (339)
T cd08239         217 Q  217 (339)
T ss_pred             c
Confidence            6

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.2e-38  Score=292.61  Aligned_cols=238  Identities=56%  Similarity=0.943  Sum_probs=204.6

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ++|||+++.+.+++++++++|.|.++++||+|||+++++|++|++.+.|..+ .  .+|.++|||++|+|+++|+++++|
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~--~~p~i~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-T--LFPVILGHEGAGIVESVGEGVTNL   77 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-C--CCCeecccceeEEEEeeCCCCccC
Confidence            4789999998887799999999999999999999999999999999988765 2  578999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+..+..+|+.|.+|+.+.+++|++.... ..|...++..++.. .|....++.+.|+|+||++++.++++++|+
T Consensus        78 ~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~  155 (365)
T cd08277          78 KPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFTC-KGKKIYHFLGTSTFSQYTVVDENYVAKIDP  155 (365)
T ss_pred             CCCCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCcccccc-CCcccccccccccceeeEEEchhheEECCC
Confidence            9999999988899999999999999999875432 23433333211110 111111222346999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++++.+.+++.+||+++.+..++++|++|+|+|+|++|++++++|+.+|+.+|+++++++++++.++++|++++++
T Consensus       156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~  235 (365)
T cd08277         156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFIN  235 (365)
T ss_pred             CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEec
Confidence            99999999999999999998777889999999999999999999999999999978999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       236 ~~~  238 (365)
T cd08277         236 PKD  238 (365)
T ss_pred             ccc
Confidence            865

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=9.8e-39  Score=290.84  Aligned_cols=220  Identities=20%  Similarity=0.368  Sum_probs=186.3

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHh-cCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      .+++++++..+++ +++++++.| +.++||||||.+++||++|++.+. |..+.....+|.++|||++|+|+++  ++++
T Consensus         3 ~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~~   78 (343)
T PRK09880          3 VKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSG   78 (343)
T ss_pred             ccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCcc
Confidence            4689999998888 999999987 589999999999999999999875 4332211257999999999999999  7889


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||++.+..+|++|++|+.+.+++|++...   .|....              +....|+|+||++++.+.++++|
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~--------------~~~~~G~~aey~~v~~~~~~~~P  141 (343)
T PRK09880         79 LKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMY--------------FPHVDGGFTRYKVVDTAQCIPYP  141 (343)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eecccc--------------cCCCCCceeeeEEechHHeEECC
Confidence            9999999999999999999999999999987543   221100              00012499999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++++++. .+++++|+++ ......++++|+|+|+|++|++++|+|+++|+++|++++++++++++++++|+++++
T Consensus       142 ~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi  219 (343)
T PRK09880        142 EKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLV  219 (343)
T ss_pred             CCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEe
Confidence            99999876654 4788999975 455667899999999999999999999999997899999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      |+++
T Consensus       220 ~~~~  223 (343)
T PRK09880        220 NPQN  223 (343)
T ss_pred             cCCc
Confidence            9877

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.6e-38  Score=291.62  Aligned_cols=228  Identities=23%  Similarity=0.346  Sum_probs=195.1

Q ss_pred             CCCcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496            7 SPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      .++++-|+++.++.+.+..+.+++.+++.|.|+++||+|||.+++||++|++.+.|.++..  .+|.++|||++|+|+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~--~~p~i~GhE~~G~V~~v   81 (360)
T PLN02586          4 SPEEEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFT--RYPIVPGHEIVGIVTKL   81 (360)
T ss_pred             ChhhhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCC--CCCccCCcceeEEEEEE
Confidence            4566789999999998887779999999999999999999999999999999998876533  57899999999999999


Q ss_pred             cCCCcccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCC----CCCCCCCCccccccCCceecccccccceeeeE
Q 024496           87 GEYVEEVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYR----PNMPRDGTSRFRELKGDVIHHFLNISSFTEYS  161 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~  161 (267)
                      |+++++|++||+|++.+. .+|+.|.+|++|.+++|++..+...    .|...+                   |+|+||+
T Consensus        82 G~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~  142 (360)
T PLN02586         82 GKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMI  142 (360)
T ss_pred             CCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEE
Confidence            999999999999986554 5799999999999999987543100    022223                   4999999


Q ss_pred             EeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-H
Q 024496          162 VVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK-F  240 (267)
Q Consensus       162 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~-~  240 (267)
                      ++|.++++++|+++++++++++.+.+.|+|+++.+...+++|++|+|.|+|++|++++|+|+.+|+ +|++++.+.++ .
T Consensus       143 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~  221 (360)
T PLN02586        143 VVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKED  221 (360)
T ss_pred             EEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhh
Confidence            999999999999999999999999999999977655667899999999999999999999999999 78877766655 4


Q ss_pred             HHHHHcCCCEEECCCC
Q 024496          241 EIGKKFGITDFINPAT  256 (267)
Q Consensus       241 ~~~~~~G~~~vi~~~~  256 (267)
                      +.++++|+++++++++
T Consensus       222 ~~~~~~Ga~~vi~~~~  237 (360)
T PLN02586        222 EAINRLGADSFLVSTD  237 (360)
T ss_pred             hHHHhCCCcEEEcCCC
Confidence            5567899999998765

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=6.6e-38  Score=289.35  Aligned_cols=238  Identities=54%  Similarity=0.937  Sum_probs=196.6

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .-..||++++.++++.++++++|.|.|+++||+|||.+++||++|++.+.+..     .+|.++|||++|+|+++|++++
T Consensus         9 ~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v~   83 (378)
T PLN02827          9 NVITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGVT   83 (378)
T ss_pred             ccceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCCc
Confidence            33579999999888779999999999999999999999999999999887642     4678999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCC-CCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR-DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||+|++.+..+|+.|.+|+++.+++|++..... .|... +...++. ..|....++...|+|+||+.+|...+++
T Consensus        84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~  161 (378)
T PLN02827         84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLER-KGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVK  161 (378)
T ss_pred             ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccc-cccccCCCccccc-ccCcccccccccccceeeEEechhheEE
Confidence            9999999999988999999999999999998743210 01000 0000000 0000000011236999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++++++.+.+.+.++|+++++..++++|++|||+|+|++|++++|+|+++|+..|++++++++++++++++|+++
T Consensus       162 iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~  241 (378)
T PLN02827        162 VDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTD  241 (378)
T ss_pred             CCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            99999999999998898999987777788999999999999999999999999999977889998999999999999999


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++++++
T Consensus       242 ~i~~~~  247 (378)
T PLN02827        242 FINPND  247 (378)
T ss_pred             EEcccc
Confidence            999875

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=6.2e-38  Score=290.94  Aligned_cols=219  Identities=29%  Similarity=0.436  Sum_probs=182.4

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCC-------CCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPK-------AWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      -|||+++..+++ ++++++|.|.|+       ++||||||+++|||++|++.+.|..+.   .+|.++|||++|+|+++|
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~---~~p~i~GhE~~G~V~~vG   77 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA---PTGLVLGHEITGEVIEKG   77 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC---CCCccccceeEEEEEEEc
Confidence            489999998887 999999999874       689999999999999999999886532   578999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC---CCCCCCCCCccccccCCceecccccccceeeeEEee
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY---RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      ++|++|++||||++.+...|+.|++|++|++++|.+.....   .+|+...|     .|          .|+|+||+++|
T Consensus        78 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~-----~~----------~G~~aey~~v~  142 (393)
T TIGR02819        78 RDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG-----GW----------VGGQSEYVMVP  142 (393)
T ss_pred             CccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC-----CC----------CCceEEEEEec
Confidence            99999999999999999999999999999999998643210   01111000     01          14999999999


Q ss_pred             cc--ceEEcCCCCCh----hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          165 IT--HVVKITPHIPL----GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       165 ~~--~~~~iP~~~~~----~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..  +++++|++++.    .+++.+.+++.++|+++ +..++++|++|+|.|+|++|++++++|+.+|++.|++++++++
T Consensus       143 ~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~  221 (393)
T TIGR02819       143 YADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPA  221 (393)
T ss_pred             hhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH
Confidence            64  79999998653    34567777899999975 4578999999999989999999999999999966777788899


Q ss_pred             hHHHHHHcCCCEEEC
Q 024496          239 KFEIGKKFGITDFIN  253 (267)
Q Consensus       239 ~~~~~~~~G~~~vi~  253 (267)
                      |+++++++|++.+++
T Consensus       222 r~~~a~~~Ga~~v~~  236 (393)
T TIGR02819       222 RLAQARSFGCETVDL  236 (393)
T ss_pred             HHHHHHHcCCeEEec
Confidence            999999999985443

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=2.1e-37  Score=280.98  Aligned_cols=213  Identities=22%  Similarity=0.296  Sum_probs=188.4

Q ss_pred             eEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           18 AAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        18 a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |+++.+++.    .++++++|.|.|+++||+|||.+++||++|++.+.|.++..  ..|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~   78 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVH--RPRVTPGHEVVGEVAGRGADAGGF   78 (329)
T ss_pred             CeeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCC--CCCccCCcceEEEEEEECCCCccc
Confidence            355666653    38899999999999999999999999999999998876543  457899999999999999999999


Q ss_pred             CCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           94 KERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        94 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ++||+|++.+. ..|+.|++|+++.+++|+....   .|...+|                   +|+||+.+|..+++++|
T Consensus        79 ~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP  136 (329)
T TIGR02822        79 AVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLP  136 (329)
T ss_pred             CCCCEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECC
Confidence            99999987654 5799999999999999987653   3433344                   99999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++++.+.+.+.+||+++ ...++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++
T Consensus       137 ~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi  214 (329)
T TIGR02822       137 TGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAG  214 (329)
T ss_pred             CCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceec
Confidence            9999999999999999999976 46889999999999999999999999999999 799999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      |+.+
T Consensus       215 ~~~~  218 (329)
T TIGR02822       215 GAYD  218 (329)
T ss_pred             cccc
Confidence            8654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=1e-37  Score=285.36  Aligned_cols=220  Identities=30%  Similarity=0.415  Sum_probs=178.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCc-ccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV-IFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~-~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |+++++..++...++++.+.|.++++||+|||.++|||++|++.+.+..+..  ..|. ++|||++|+|+++| .++.|+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~--~~~~~i~GHE~~G~V~evG-~~~~~~   77 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV--PPGDIILGHEFVGEVVEVG-VVRGFK   77 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC--CCCCcccCccceEEEEEec-cccCCC
Confidence            6778888777645577777777899999999999999999999999987655  4555 99999999999999 778899


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE-cCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK-ITP  173 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~-iP~  173 (267)
                      +||||++.+..+|+.|.+|++|.+++|++..+   .|....+            .+  ..|+|+||+.+|.++.+. +|+
T Consensus        78 ~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~---~g~~~~~------------~~--~~G~~aEyv~vp~~~~~~~~pd  140 (350)
T COG1063          78 VGDRVVVEPNIPCGHCRYCRAGEYNLCENPGF---YGYAGLG------------GG--IDGGFAEYVRVPADFNLAKLPD  140 (350)
T ss_pred             CCCEEEECCCcCCCCChhHhCcCcccCCCccc---ccccccc------------CC--CCCceEEEEEeccccCeecCCC
Confidence            99999999999999999999999999995543   2222111            00  124999999999765555 578


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi  252 (267)
                      +++++.+ ++..+++++|++........++++|+|+|+|++|++++++++.+|+.+|+++|++++|++++++ +|++.++
T Consensus       141 ~~~~~~a-al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~  219 (350)
T COG1063         141 GIDEEAA-ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVV  219 (350)
T ss_pred             CCChhhh-hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEee
Confidence            8744444 4555999998864555666666699999999999999999999999999999999999999998 6777777


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +..+
T Consensus       220 ~~~~  223 (350)
T COG1063         220 NPSE  223 (350)
T ss_pred             cCcc
Confidence            6655

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=1.6e-37  Score=281.24  Aligned_cols=201  Identities=30%  Similarity=0.358  Sum_probs=179.2

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++..++.|  ++++++|.|.|+++||||||.+++||+.|+..+.|..... .++|+++|.|++|+|+++|++|+.|
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~-~~~P~i~G~d~aG~V~avG~~V~~~   79 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPV-RPLPFIPGSEAAGVVVAVGSGVTGF   79 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCC-CCCCCcccceeEEEEEEeCCCCCCc
Confidence            789999988877  8889999999999999999999999999999999973222 1689999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||||+....                         .+  .+                   |+|+||+.+|+..++++|+
T Consensus        80 ~~GdrV~~~~~-------------------------~~--~~-------------------G~~AEy~~v~a~~~~~~P~  113 (326)
T COG0604          80 KVGDRVAALGG-------------------------VG--RD-------------------GGYAEYVVVPADWLVPLPD  113 (326)
T ss_pred             CCCCEEEEccC-------------------------CC--CC-------------------CcceeEEEecHHHceeCCC
Confidence            99999987420                         00  22                   4999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++||++++.+.|||+++.+..++++|++|||+|+ |+||++++|+|+++|+ .++++.+++++.++++++|+++++
T Consensus       114 ~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi  192 (326)
T COG0604         114 GLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVI  192 (326)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEE
Confidence            99999999999999999999888899999999999986 9999999999999999 777766677888899999999999


Q ss_pred             CCCCCCcccccccc
Q 024496          253 NPATCGDKTVSQVN  266 (267)
Q Consensus       253 ~~~~~~~~~~~~v~  266 (267)
                      ||++  ++|.++++
T Consensus       193 ~y~~--~~~~~~v~  204 (326)
T COG0604         193 NYRE--EDFVEQVR  204 (326)
T ss_pred             cCCc--ccHHHHHH
Confidence            9999  88877663

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.4e-36  Score=279.99  Aligned_cols=243  Identities=53%  Similarity=0.848  Sum_probs=206.8

Q ss_pred             cCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCC
Q 024496           10 AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        10 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      ..+..+||++++..++++++++++|.|.+.++||+||+.++++|++|++.+.|.+. .  .+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~--~~p~v~G~e~~G~V~~vG~~   78 (373)
T cd08299           2 AGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-T--PFPVILGHEAAGIVESVGEG   78 (373)
T ss_pred             CcccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-C--CCCccccccceEEEEEeCCC
Confidence            35567799999999888899999999999999999999999999999999988763 2  57889999999999999999


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV  169 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~  169 (267)
                      ++.|++||+|++.+..+|+.|.+|+.+.++.|++.....-.|...+++.++. -.|+..+++.+.|+|+||++++.++++
T Consensus        79 v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~  157 (373)
T cd08299          79 VTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVA  157 (373)
T ss_pred             CccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEeccccee
Confidence            9999999999998889999999999999999987542100122222222221 012222344445799999999999999


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|+++++++++++.+++.++|+++....+++++++|+|+|+|++|++++++|+.+|+++|+++++++++++.++++|++
T Consensus       158 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~  237 (373)
T cd08299         158 KIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGAT  237 (373)
T ss_pred             eCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999877888999999999999899999999999999997899999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++++.+
T Consensus       238 ~~i~~~~  244 (373)
T cd08299         238 ECINPQD  244 (373)
T ss_pred             eEecccc
Confidence            9998765

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3.9e-36  Score=277.30  Aligned_cols=217  Identities=23%  Similarity=0.318  Sum_probs=181.4

Q ss_pred             eEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCC
Q 024496           18 AAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERD   97 (267)
Q Consensus        18 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   97 (267)
                      +++..+..+++++.+++.|.|+++||+|||.+++||++|++.+.|.+...  .+|.++|||++|+|+++|+++++|++||
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~--~~p~i~GhE~aG~Vv~vG~~v~~~~vGd   86 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFS--RYPIIPGHEIVGIATKVGKNVTKFKEGD   86 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCC--CCCcccCceeeEEEEEECCCCCccCCCC
Confidence            34444544558888999999999999999999999999999998876433  5689999999999999999999999999


Q ss_pred             EEEeeccC-CCCCCcccccCCCCCCCCCCCCCC----CCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           98 LVLPIFHR-DCGECRDCKSSKSNTCSKFGRGYR----PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        98 ~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~----~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ||++.+.. +|+.|.+|++|++++|++......    .|...+                   |+|+||+++|.++++++|
T Consensus        87 rV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP  147 (375)
T PLN02178         87 RVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIP  147 (375)
T ss_pred             EEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECC
Confidence            99876654 699999999999999987543100    011122                   499999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHHHcCCCE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK-FEIGKKFGITD  250 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~G~~~  250 (267)
                      +++++++++++.+...|+|+++..... .++|++|+|.|+|++|++++|+|+.+|+ +|+++++++++ .+.++++|+++
T Consensus       148 ~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~  226 (375)
T PLN02178        148 DGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADS  226 (375)
T ss_pred             CCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcE
Confidence            999999999999999999997644332 3689999999999999999999999999 78888776554 67788999999


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++++++
T Consensus       227 ~i~~~~  232 (375)
T PLN02178        227 FLVTTD  232 (375)
T ss_pred             EEcCcC
Confidence            998765

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=5.9e-36  Score=273.66  Aligned_cols=216  Identities=23%  Similarity=0.308  Sum_probs=176.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCC-CCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK-LPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++..++.+++++++|.|+|+++||||||.+++||++|++.+.|.++... ..+|.++|||++|+|+++|++ ++|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            68899986554499999999999999999999999999999999998754321 146889999999999999999 9999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||||+..+...|+.|.+|++|.+++|+..... ..|.. .+                   |+|+||++++.+.++++|+
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~~~-------------------G~~aey~~~~~~~~~~~P~  139 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKGLH-------------------GFMREYFVDDPEYLVKVPP  139 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCCCC-------------------ccceeEEEeccccEEECCC
Confidence            999999988889999999999999999764321 01211 12                   4899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHH------HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHH
Q 024496          174 HIPLGIACLLSCGVSTGVGAAW------KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI---NPEKFEIGK  244 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~------~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~---~~~~~~~~~  244 (267)
                      +++ +.+ .+..++++++.++.      +..+.++|++|+|+|+|++|++++|+|+++|+ +|+++++   +++|+++++
T Consensus       140 ~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~  216 (355)
T cd08230         140 SLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVE  216 (355)
T ss_pred             CCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHH
Confidence            998 433 33345555544332      22336789999999999999999999999999 8999987   688999999


Q ss_pred             HcCCCEEECCCC
Q 024496          245 KFGITDFINPAT  256 (267)
Q Consensus       245 ~~G~~~vi~~~~  256 (267)
                      ++|++. +++++
T Consensus       217 ~~Ga~~-v~~~~  227 (355)
T cd08230         217 ELGATY-VNSSK  227 (355)
T ss_pred             HcCCEE-ecCCc
Confidence            999986 56665

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=5.9e-36  Score=273.17  Aligned_cols=211  Identities=28%  Similarity=0.466  Sum_probs=186.7

Q ss_pred             EEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccCCCC
Q 024496           19 AICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVKERD   97 (267)
Q Consensus        19 ~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd   97 (267)
                      +++++++++++++++|.|.|+++||+|||.++++|++|++.+.+.. +..  .+|.++|||++|+|+++|++++.+ +||
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~-~Gd   78 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNH--ALPLALGHEISGRVIQAGAGAASW-IGK   78 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccC--CCCeeccccceEEEEEeCCCcCCC-CCC
Confidence            4567777778999999999999999999999999999999874432 222  578999999999999999999887 999


Q ss_pred             EEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC----
Q 024496           98 LVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP----  173 (267)
Q Consensus        98 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~----  173 (267)
                      +|++.+..+|+.|.+|+++.+++|.....   .|...+|                   +|+||+.+|.++++++|+    
T Consensus        79 rV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~  136 (349)
T TIGR03201        79 AVIVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLA  136 (349)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccc
Confidence            99999999999999999999999976543   2333334                   999999999999999999    


Q ss_pred             --CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          174 --HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       174 --~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                        ++++++++.+.+.+.++|+++ ...++++|++|+|+|+|++|++++++|+++|+ +|+++++++++++.++++|++++
T Consensus       137 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~  214 (349)
T TIGR03201       137 AAGLPLEHVSVVADAVTTPYQAA-VQAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLT  214 (349)
T ss_pred             ccCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceE
Confidence              899999999888999999976 45789999999999999999999999999999 89999999999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      +|+.+
T Consensus       215 i~~~~  219 (349)
T TIGR03201       215 LNPKD  219 (349)
T ss_pred             ecCcc
Confidence            99866

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=1.6e-35  Score=271.91  Aligned_cols=237  Identities=50%  Similarity=0.844  Sum_probs=207.3

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      +||+++.+++.++++++++.|.++++||+||+.++++|++|++.+.+.+..   ..|.++|||++|+|+++|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~---~~~~i~g~e~~G~V~~vG~~v~~~~~   77 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT---PLPVILGHEGAGIVESIGPGVTTLKP   77 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC---CCCcccccceeEEEEEeCCCcccCCC
Confidence            579999998888999999999999999999999999999999998887542   46789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|++.+..+|++|.+|+.+.+++|+........|...+|+..+-. +|...+||.+.|+|++|+.++.+.++++|+++
T Consensus        78 Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~  156 (365)
T cd05279          78 GDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDA  156 (365)
T ss_pred             CCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCC
Confidence            99999998889999999999999999887654444544444333311 33334556666899999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++.+.+++.++|+++....+++++++|||+|+|++|++++++|+.+|+..|+++++++++.+.++++|++++++++
T Consensus       157 ~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  236 (365)
T cd05279         157 PLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPR  236 (365)
T ss_pred             CHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccc
Confidence            99999999989999999887888999999999998899999999999999996788888899999999999999999987


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       237 ~  237 (365)
T cd05279         237 D  237 (365)
T ss_pred             c
Confidence            6

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.4e-35  Score=270.21  Aligned_cols=226  Identities=25%  Similarity=0.323  Sum_probs=190.1

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      ..+++++++..+++++++++++.|.|+++||+|||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~E~~G~Vv~vG~~v~~   84 (357)
T PLN02514          7 EKKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMS--NYPMVPGHEVVGEVVEVGSDVSK   84 (357)
T ss_pred             CceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcC--CCCccCCceeeEEEEEECCCccc
Confidence            3468999999999999999999999999999999999999999999998876543  57899999999999999999999


Q ss_pred             cCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      |++||+|++.+. ..|+.|.+|+++.++.|....+....++ ..|              +...|+|+||+++|...++++
T Consensus        85 ~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g--------------~~~~G~~aey~~v~~~~~~~i  149 (357)
T PLN02514         85 FTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDG--------------KPTQGGFASAMVVDQKFVVKI  149 (357)
T ss_pred             ccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCC--------------ccCCCccccEEEEchHHeEEC
Confidence            999999986554 3699999999999999987533211000 001              001249999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCCE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGITD  250 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~~  250 (267)
                      |+++++++++.+.+.+.+||+++.+....++|++|+|+|+|++|++++|+|+.+|+ +++++++++++++.+ +++|+++
T Consensus       150 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~  228 (357)
T PLN02514        150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADD  228 (357)
T ss_pred             CCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcE
Confidence            99999999999999999999977555556899999999999999999999999999 788887777766554 5799998


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++++.+
T Consensus       229 ~i~~~~  234 (357)
T PLN02514        229 YLVSSD  234 (357)
T ss_pred             EecCCC
Confidence            887654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-35  Score=269.91  Aligned_cols=213  Identities=24%  Similarity=0.402  Sum_probs=185.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++..++. ++++++|.|.| +++||+|||.++++|++|++.+..... .  .+|.++|||++|+|+++|+++++|+
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~-~--~~p~i~G~e~~G~V~~vG~~v~~~~   76 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA-H--YYPITLGHEFSGYVEAVGSGVDDLH   76 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC-C--CCCcccccceEEEEEEeCCCCCCCC
Confidence            78999998876 99999999997 589999999999999999975432211 1  4678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|++.+..+|+.|++|..|.+++|.....   .|...+                   |+|+||+.++.+.++++|++
T Consensus        77 vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~-------------------G~~aey~~v~~~~~~~lP~~  134 (347)
T PRK10309         77 PGDAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRD-------------------GGNAEYIVVKRKNLFALPTD  134 (347)
T ss_pred             CCCEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCC-------------------CccceeEEeehHHeEECcCC
Confidence            99999999999999999999999999976432   333333                   49999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++++++. .+++++++ .+...++++++|+|+|+|++|++++|+|+.+|++.|+++++++++++.++++|+++++|+
T Consensus       135 ~s~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~  212 (347)
T PRK10309        135 MPIEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNS  212 (347)
T ss_pred             CCHHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecC
Confidence            9999998874 55667886 466788999999999999999999999999999668999999999999999999999998


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       213 ~~  214 (347)
T PRK10309        213 RE  214 (347)
T ss_pred             cc
Confidence            76

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=9.1e-35  Score=266.96  Aligned_cols=239  Identities=37%  Similarity=0.682  Sum_probs=200.3

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |+|||+++.++++++++++.+.|.+.++||+||+.++++|++|++...+.++.   ..|.++|||++|+|+++|+++.+|
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~---~~p~v~G~e~~G~V~~vG~~v~~~   77 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT---PLPAVLGHEGAGVVEAVGSAVTGL   77 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC---CCCcccccceeEEEEEeCCCcccC
Confidence            68999999998777999999999999999999999999999999999887652   468899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCcee-cccccccceeeeEEeeccceEEcC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVI-HHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ++||+|++.+. .|++|.+|+.+.+++|.+.......|...+|--...+..|+.+ .++...|+|++|+.++..+++++|
T Consensus        78 ~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP  156 (365)
T cd08278          78 KPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVD  156 (365)
T ss_pred             CCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECC
Confidence            99999998764 8999999999999999865432222222222000000001000 112234699999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++++.+.+.+.+|+.++.....++++++|+|+|+|.+|++++++|+++|++.++++++++++.++++++|+++++
T Consensus       157 ~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i  236 (365)
T cd08278         157 KDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVI  236 (365)
T ss_pred             CCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEe
Confidence            99999999999999999999877788899999999998899999999999999997799999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      ++++
T Consensus       237 ~~~~  240 (365)
T cd08278         237 NPKE  240 (365)
T ss_pred             cCCC
Confidence            9877

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=9.9e-35  Score=263.11  Aligned_cols=214  Identities=27%  Similarity=0.425  Sum_probs=190.6

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++. +++++++.|.|+++||+||+.++++|++|++.+.|.++..  ++|.++|||++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~~~~   77 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFA--KYPRVIGHEFFGVIDAVGEGVDAARI   77 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcC--CCCcccccceEEEEEEECCCCccCCC
Confidence            68999998876 9999999999999999999999999999999998876543  57899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|++.+..+|+.|.+|..+.+++|.+...   .++..+                   |+|++|+.++.++++++|+++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~  135 (339)
T PRK10083         78 GERVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAI  135 (339)
T ss_pred             CCEEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCC
Confidence            9999999999999999999999999976442   222223                   389999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++++++. ...+.++|+ +....++++|++|+|+|+|.+|++++++|+. +|+..++++++++++.++++++|+++++++
T Consensus       136 ~~~~a~~-~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~  213 (339)
T PRK10083        136 ADQYAVM-VEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN  213 (339)
T ss_pred             CHHHHhh-hchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence            9988764 457888886 5677899999999999999999999999996 699778889999999999999999999998


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       214 ~~  215 (339)
T PRK10083        214 AQ  215 (339)
T ss_pred             cc
Confidence            76

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.8e-34  Score=263.07  Aligned_cols=221  Identities=30%  Similarity=0.443  Sum_probs=191.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCC--------CCCCCcccceeeEEEEEEe
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLP--------KLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~--------~~~~p~~~G~e~~G~V~~v   86 (267)
                      |||+++.+++. ++++++|.|.|.++||+||+.++++|++|++.+.+.. ...        ....|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            78999998776 9999999999999999999999999999988765321 100        0136889999999999999


Q ss_pred             cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeec
Q 024496           87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      |++++.|++||+|+..+...|+.|.+|+++.+++|.+...   .|+. .+                   |+|++|+.++.
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~a~~~~~~~  137 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGGGG-------------------GGFAEYVVVPA  137 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCCCC-------------------CceeeEEEech
Confidence            9999999999999999889999999999999999976542   2221 12                   48999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+++++|+++++++++.+ .++.+||+++ ...+++++++|+|+|+|.+|++++|+|+.+|+++|+++++++++.+++++
T Consensus       138 ~~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~  215 (351)
T cd08233         138 YHVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE  215 (351)
T ss_pred             HHeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            999999999999998876 5778999976 78889999999999999999999999999999889999999999999999


Q ss_pred             cCCCEEECCCCCCccccc
Q 024496          246 FGITDFINPATCGDKTVS  263 (267)
Q Consensus       246 ~G~~~vi~~~~~~~~~~~  263 (267)
                      +|++.++|+++  +++.+
T Consensus       216 ~ga~~~i~~~~--~~~~~  231 (351)
T cd08233         216 LGATIVLDPTE--VDVVA  231 (351)
T ss_pred             hCCCEEECCCc--cCHHH
Confidence            99999999887  55543

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.7e-34  Score=260.32  Aligned_cols=219  Identities=26%  Similarity=0.423  Sum_probs=194.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++..++++++++++|.|.+.++||+||+.++++|++|+..+.|..+..  ..|.++|||++|+|+++|+++++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~v~~vG~~v~~~~~   78 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SYPRVPGHEVVGRIDAVGEGVSRWKV   78 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCC--CCCcccCcceeEEEEEECCCCccCCC
Confidence            7999999986669999999999999999999999999999999998866433  56889999999999999999999999


Q ss_pred             CCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||+|++.+ ...|+.|.+|..|.++.|.....   .|+..+|                   +|++|+.++...++++|++
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~  136 (333)
T cd08296          79 GDRVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDD  136 (333)
T ss_pred             CCEEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCC
Confidence            99998754 46799999999999999987553   3333333                   8999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++++.+.+.+.++|+++. ...+.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++++.++++|+++++++
T Consensus       137 ~~~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~  214 (333)
T cd08296         137 LDAAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDT  214 (333)
T ss_pred             CCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecC
Confidence            999999999999999999764 4589999999999999999999999999999 89999999999999999999999998


Q ss_pred             CCCCcccc
Q 024496          255 ATCGDKTV  262 (267)
Q Consensus       255 ~~~~~~~~  262 (267)
                      ++  +++.
T Consensus       215 ~~--~~~~  220 (333)
T cd08296         215 SK--EDVA  220 (333)
T ss_pred             CC--ccHH
Confidence            77  5443

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=2.9e-34  Score=262.61  Aligned_cols=223  Identities=26%  Similarity=0.431  Sum_probs=194.3

Q ss_pred             eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc----
Q 024496           17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE----   92 (267)
Q Consensus        17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~----   92 (267)
                      |++++.++++++++++++.|.|+++||+|||.++++|++|+....|.++..  .+|.++|||++|+|+++|++++.    
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~~~   79 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRV--PLPIILGHEGVGRVVALGGGVTTDVAG   79 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCC--CCCcccccCCceEEEEeCCCccccccC
Confidence            789999988779999999999999999999999999999999998876532  57889999999999999999986    


Q ss_pred             --cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc-ceE
Q 024496           93 --VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT-HVV  169 (267)
Q Consensus        93 --~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~-~~~  169 (267)
                        |++||+|+..+..+|+.|.+|+.+.+++|++...   .|...+-            +.....|+|++|+.++.+ .++
T Consensus        80 ~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~------------~~~~~~g~~a~~~~v~~~~~~~  144 (361)
T cd08231          80 EPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASC------------DDPHLSGGYAEHIYLPPGTAIV  144 (361)
T ss_pred             CccCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccc------------cCCCCCcccceEEEecCCCceE
Confidence              9999999999999999999999999999988654   2221110            000012599999999986 799


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|+++++.+++++++++.|||+++.+.....++++|||+|+|.+|++++++|+.+|+++|+++++++++.++++++|++
T Consensus       145 ~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~  224 (361)
T cd08231         145 RVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGAD  224 (361)
T ss_pred             ECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCC
Confidence            99999999999999889999999876666667999999999999999999999999997899999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++++++
T Consensus       225 ~vi~~~~  231 (361)
T cd08231         225 ATIDIDE  231 (361)
T ss_pred             eEEcCcc
Confidence            9998876

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=2.4e-34  Score=262.30  Aligned_cols=222  Identities=28%  Similarity=0.349  Sum_probs=194.6

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++. +++++++.|.++++||+||+.++++|++|++.+.+.+...  ..|.++|||++|+|+++|+.+++|++
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~--~~~~~~G~e~~G~V~~vG~~v~~~~~   77 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGE--RHGMILGHEAVGVVEEVGSEVKDFKP   77 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCC--CCCcccCcceEEEEEEecCCcCccCC
Confidence            79999999886 8899999998999999999999999999999888765443  56899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKITP  173 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP~  173 (267)
                      ||+|+..+..+|+.|..|..|.++.|.+...+...+...+                   |+|++|+.++.+  .++++|+
T Consensus        78 Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~  138 (351)
T cd08285          78 GDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPD  138 (351)
T ss_pred             CCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCC
Confidence            9999998888999999999999999987532111111122                   499999999974  8999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++++.+++.+.+++++ .....++++++|||+|+|++|++++++|+.+|+..++++++++++.++++++|++++++
T Consensus       139 ~~~~~~aa~~~~~~~ta~~~-~~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~  217 (351)
T cd08285         139 GLTDEQAVMLPDMMSTGFHG-AELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVD  217 (351)
T ss_pred             CCCHHHhhhhccchhhHHHH-HHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEec
Confidence            99999999998899999997 57788999999999988999999999999999977999999999999999999999999


Q ss_pred             CCCCCcccc
Q 024496          254 PATCGDKTV  262 (267)
Q Consensus       254 ~~~~~~~~~  262 (267)
                      +++  +++.
T Consensus       218 ~~~--~~~~  224 (351)
T cd08285         218 YKN--GDVV  224 (351)
T ss_pred             CCC--CCHH
Confidence            876  4443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.3e-34  Score=263.75  Aligned_cols=209  Identities=19%  Similarity=0.175  Sum_probs=171.8

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC--CCCCCcccceeeEEEEEEecCCCc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP--KLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      |+.+++++..+++ ++++++|.|. +++||||||+++|||++|++.+.|.+...  ...+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            4568999999987 9999999995 99999999999999999999999875321  1257999999999999998865  


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||||++.+...|+ |.+|  +..++|....+   .|...+|                   +|+||+++|.++++++
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  131 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL  131 (341)
T ss_pred             ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence            79999999998877787 4355  45678866543   2222334                   8999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHH--HhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCC
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWK--VAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      |+++++++|+++. +++++|+++..  ...+++|++|||+|+|++|++++|+++. +|..+|++++++++|+++++++++
T Consensus       132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~  210 (341)
T cd08237         132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE  210 (341)
T ss_pred             CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc
Confidence            9999999888665 88889997654  3457899999999999999999999986 666689999999999999887666


Q ss_pred             CEEE
Q 024496          249 TDFI  252 (267)
Q Consensus       249 ~~vi  252 (267)
                      +..+
T Consensus       211 ~~~~  214 (341)
T cd08237         211 TYLI  214 (341)
T ss_pred             eeeh
Confidence            5433

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.6e-33  Score=255.58  Aligned_cols=218  Identities=35%  Similarity=0.515  Sum_probs=194.3

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++.+++. +.+.++|.|.| .++||+||+.++++|++|++.+.+.++..  ++|.++|||++|+|+++|+++++|+
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~~~~   77 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGA--KHGMILGHEFVGEVVEVGSDVKRLK   77 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCC--CCCceeccceEEEEEEECCCccccC
Confidence            68999998877 89999999999 89999999999999999999998877644  6789999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||+|+..+.+.|+.|.+|..+.+++|+....+...+...+                   |+|++|++++.+  +++++|
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~v~~~~~~~~~lP  138 (347)
T cd05278          78 PGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRID-------------------GGQAEYVRVPYADMNLAKIP  138 (347)
T ss_pred             CCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCC-------------------CeeeEEEEecchhCeEEECC
Confidence            99999999999999999999999999987553221222223                   499999999987  899999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++++.+++.+.+||+++ ...+++++++|||.|+|.+|++++++|+.+|+.+|+++++++++.++++++|+++++
T Consensus       139 ~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi  217 (347)
T cd05278         139 DGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDII  217 (347)
T ss_pred             CCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEE
Confidence            9999999999999999999976 678899999999988899999999999999976888888889999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      ++++
T Consensus       218 ~~~~  221 (347)
T cd05278         218 NPKN  221 (347)
T ss_pred             cCCc
Confidence            9877

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=239.75  Aligned_cols=203  Identities=31%  Similarity=0.298  Sum_probs=186.8

Q ss_pred             cCccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           10 AGKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        10 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      ...|+..|.+++.+.|..  +++++.|.|+|+++|++||..++|+|..|..+.+|.+...  +.|++||-|++|+|+++|
T Consensus         3 ~~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~--plPytpGmEaaGvVvAvG   80 (336)
T KOG1197|consen    3 AASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPA--PLPYTPGMEAAGVVVAVG   80 (336)
T ss_pred             CCCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCC--CCCcCCCcccceEEEEec
Confidence            346788999999998887  7889999999999999999999999999999999999755  899999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      ++|++|++||||.....                              .                   |.|+|+..+|...
T Consensus        81 ~gvtdrkvGDrVayl~~------------------------------~-------------------g~yaee~~vP~~k  111 (336)
T KOG1197|consen   81 EGVTDRKVGDRVAYLNP------------------------------F-------------------GAYAEEVTVPSVK  111 (336)
T ss_pred             CCccccccccEEEEecc------------------------------c-------------------hhhheecccccee
Confidence            99999999999965321                              1                   4899999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ++++|+++++.+||++.+.+.|||.-+++-.++++|++|||+.+ |++|++++|++++.|+ .+|++.++.+|.+.+++.
T Consensus       112 v~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~aken  190 (336)
T KOG1197|consen  112 VFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKEN  190 (336)
T ss_pred             eccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhc
Confidence            99999999999999999999999997788889999999999965 9999999999999999 999999999999999999


Q ss_pred             CCCEEECCCCCCcccccccc
Q 024496          247 GITDFINPATCGDKTVSQVN  266 (267)
Q Consensus       247 G~~~vi~~~~~~~~~~~~v~  266 (267)
                      |++|.|+++.  +|++++|+
T Consensus       191 G~~h~I~y~~--eD~v~~V~  208 (336)
T KOG1197|consen  191 GAEHPIDYST--EDYVDEVK  208 (336)
T ss_pred             CCcceeeccc--hhHHHHHH
Confidence            9999999999  99888763

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=5.3e-33  Score=251.68  Aligned_cols=219  Identities=29%  Similarity=0.440  Sum_probs=195.5

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..+++++++.+.+.|.+++++|+||+.++++|++|+....|.+.. ....+|.++|||++|+|+++|+++.+|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            689999988777999999999999999999999999999999998887642 1125688999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+..+...|+.|..|..|.+++|++..+   .|...+|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999999999999999999999999988765   3443344                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++++.+++.+.+||+++... ..+.++++|||+|+|.+|++++++|+.+|..+|+++++++++.+.++++|++++++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~  218 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLN  218 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEc
Confidence            99999999999999999987665 46889999999999889999999999999338999998999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       219 ~~~  221 (340)
T cd05284         219 ASD  221 (340)
T ss_pred             CCc
Confidence            876

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.5e-33  Score=252.74  Aligned_cols=216  Identities=28%  Similarity=0.469  Sum_probs=189.6

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-------CCCCCCcccceeeEEEEEEecC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-------PKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-------~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |||+++.+++. +++++++.|.+.+++|+||+.++++|++|+..+.|.+..       ....+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            78999998876 999999999999999999999999999999988775311       0013577899999999999999


Q ss_pred             CCc--ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC--CCCCCccccccCCceecccccccceeeeEEee
Q 024496           89 YVE--EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM--PRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        89 ~v~--~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~--~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      .++  +|++||+|+..+.++|+.|.+|+.+++++|.....   .|+  ..+                   |+|++|+.++
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~-------------------g~~~~~~~~~  137 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDL---YGFQNNVN-------------------GGMAEYMRFP  137 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccc---eeeccCCC-------------------CcceeeEEcc
Confidence            999  89999999999999999999999999999975432   222  123                   4999999999


Q ss_pred             cc-ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          165 IT-HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       165 ~~-~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+ .++++|+++++++++.+ .++.++|+++ +..++.++++|+|.|+|.+|++++++|+++|+..++++++++++.+++
T Consensus       138 ~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~  215 (350)
T cd08256         138 KEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALA  215 (350)
T ss_pred             cccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHH
Confidence            88 57899999999999988 7999999976 788999999999988899999999999999997788999999999999


Q ss_pred             HHcCCCEEECCCC
Q 024496          244 KKFGITDFINPAT  256 (267)
Q Consensus       244 ~~~G~~~vi~~~~  256 (267)
                      +++|+++++++++
T Consensus       216 ~~~g~~~v~~~~~  228 (350)
T cd08256         216 RKFGADVVLNPPE  228 (350)
T ss_pred             HHcCCcEEecCCC
Confidence            9999999998876

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=1.3e-32  Score=254.66  Aligned_cols=233  Identities=29%  Similarity=0.377  Sum_probs=192.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++.+++. ++++++|.|.| ++++|+||+.+++||++|+..+.|.++..  ++|.++|||++|+|+++|+++++|+
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~   77 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGM--KKGDILGHEFMGVVEEVGPEVRNLK   77 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCC--CCCccccccceEEEEEeCCCCCCCC
Confidence            78999998755 99999999988 59999999999999999999999987654  5789999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC-CCCCCCCCCccccccCCceeccc-ccccceeeeEEeecc--ceEE
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY-RPNMPRDGTSRFRELKGDVIHHF-LNISSFTEYSVVDIT--HVVK  170 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~-~~~g~~a~y~~v~~~--~~~~  170 (267)
                      +||+|+..+...|++|++|+.+.++.|++..... ..+  .+|.... ...+ ....+ +..|+|++|++++.+  .+++
T Consensus        78 ~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~-~~~~~~~~~g~~~~~~~v~~~~~~~~~  153 (386)
T cd08283          78 VGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAK--LYGHAGA-GIFG-YSHLTGGYAGGQAEYVRVPFADVGPFK  153 (386)
T ss_pred             CCCEEEEcCcCCCCCChhhcCCCcccCCCccccccccc--ccccccc-cccc-cccccCCCCCeeEEEEEcccccCeEEE
Confidence            9999999988899999999999999998754321 000  0000000 0000 00000 113699999999987  8999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++++++.+++.+.+||+++ ....+.++++|||+|+|.+|++++++|+++|+.+|+++++++++.+.+++++...
T Consensus       154 lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~  232 (386)
T cd08283         154 IPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE  232 (386)
T ss_pred             CCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE
Confidence            999999999999999999999987 7788999999999988999999999999999867999999999999999985457


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++++++
T Consensus       233 vi~~~~  238 (386)
T cd08283         233 TINFEE  238 (386)
T ss_pred             EEcCCc
Confidence            888776

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1.9e-32  Score=251.13  Aligned_cols=236  Identities=42%  Similarity=0.685  Sum_probs=197.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++..++.++++++++.|.++++||+||+.++++|+.|+..+.+.++.   .+|.++|+|++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~~   77 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA---PLPAVLGHEGAGVVEEVGPGVTGVKP   77 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC---CCCccccccceEEEEEeCCCccccCC
Confidence            799999999888999999999999999999999999999999988887652   56789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+..+..+|++|.+|.++.++.|+...... +|...++..++-- -|.....++..|+|++|+.++.+.++++|+++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  155 (363)
T cd08279          78 GDHVVLSWIPACGTCRYCSRGQPNLCDLGAGIL-GGQLPDGTRRFTA-DGEPVGAMCGLGTFAEYTVVPEASVVKIDDDI  155 (363)
T ss_pred             CCEEEECCCCCCCCChhhcCCCcccCccccccc-ccccCCCcccccc-cCccccccccCccceeeEEeccccEEECCCCC
Confidence            999999999999999999999999997643110 1111111000000 00000001223699999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++++++.+.+||.++....++.++++|||+|+|.+|++++++|+.+|+.+|+++++++++.+.++++|++++++++
T Consensus       156 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~  235 (363)
T cd08279         156 PLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNAS  235 (363)
T ss_pred             ChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCC
Confidence            99999999999999999888888899999999998899999999999999996699999999999999999999999987


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       236 ~  236 (363)
T cd08279         236 E  236 (363)
T ss_pred             C
Confidence            6

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.6e-32  Score=245.80  Aligned_cols=216  Identities=31%  Similarity=0.494  Sum_probs=194.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++.++++++.+.|.+.++||+||+.++++|++|+....|..+..  .+|.++|+|++|+|+++|+.++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~~G~~~~~~~~   78 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDV--TLPHVPGHEFAGVVVEVGEDVSRWRV   78 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCC--CCCeeeccceeEEEEEECCCCccCCC
Confidence            7999999888889999999999999999999999999999999998876643  56889999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKITP  173 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP~  173 (267)
                      ||+|+..+...|++|.+|+.|.+++|+....   .++..+|                   +|++|++++..  +++++|+
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~iP~  136 (345)
T cd08260          79 GDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHPG-------------------SFAEYVAVPRADVNLVRLPD  136 (345)
T ss_pred             CCEEEECCCCCCCCCccccCcCcccCCCCcc---cccCCCC-------------------cceeEEEcccccCceEECCC
Confidence            9999886777899999999999999998643   3333334                   89999999975  8999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++++.+.+.+.+||+++....++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++++++
T Consensus       137 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~  215 (345)
T cd08260         137 DVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVN  215 (345)
T ss_pred             CCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEc
Confidence            999999999998999999987777889999999999999999999999999999 8999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       216 ~~~  218 (345)
T cd08260         216 ASE  218 (345)
T ss_pred             ccc
Confidence            875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=4.4e-32  Score=246.49  Aligned_cols=217  Identities=32%  Similarity=0.423  Sum_probs=193.1

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++. +++++++.|+| .++||+||++++++|++|+..+.|.++..  .+|.++|||++|+|+++|+++++++
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~   77 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTV--TPGRILGHEGVGVVEEVGSAVTNFK   77 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCC--CCCceecccceEEEEEeccCccccC
Confidence            78999998887 99999999986 79999999999999999999998876544  4588999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||+|++.+...|+.|++|..+.++.|....+.  .|...+                   |+|++|+.++..  .++++|
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp  136 (345)
T cd08286          78 VGDRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLP  136 (345)
T ss_pred             CCCEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECC
Confidence            999999998889999999999999999765432  122223                   489999999987  899999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++..+++.+.+.+.+||+++....++.++++|||.|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+++++
T Consensus       137 ~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v  216 (345)
T cd08286         137 EGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTV  216 (345)
T ss_pred             CCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCcee
Confidence            99999999999989999999777778899999999998899999999999999955899999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      ++++
T Consensus       217 ~~~~  220 (345)
T cd08286         217 NSAK  220 (345)
T ss_pred             cccc
Confidence            9876

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=3.3e-32  Score=247.91  Aligned_cols=219  Identities=32%  Similarity=0.477  Sum_probs=192.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC----------CCCCCCcccceeeEEEEEE
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL----------PKLPLPVIFGHEAVGVVES   85 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~~~p~~~G~e~~G~V~~   85 (267)
                      |||+++..++.+++++++|.|.+.++||+||+.++++|++|++.+.+.++.          ....+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            789999988888999999999999999999999999999999998876532          0014567899999999999


Q ss_pred             ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      +|++++++++||+|+..+...|+.|.+|.++.+++|.+...   .|....                   |++++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQD-------------------GGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeecc-------------------CcceeeEEecH
Confidence            99999999999999999999999999999999999966432   122222                   48999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..++++|+++++.+++.+.+.+.+||+++.....+.++++|+|+|+|.+|++++++|+.+|+++|+++++++++.+.+++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999977665666789999999889999999999999999889999999999999999


Q ss_pred             cCCCEEECCCC
Q 024496          246 FGITDFINPAT  256 (267)
Q Consensus       246 ~G~~~vi~~~~  256 (267)
                      +|++.++++++
T Consensus       219 ~g~~~~~~~~~  229 (350)
T cd08240         219 AGADVVVNGSD  229 (350)
T ss_pred             hCCcEEecCCC
Confidence            99999998876

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=5.8e-32  Score=250.45  Aligned_cols=224  Identities=20%  Similarity=0.148  Sum_probs=190.3

Q ss_pred             CccccceeEEeec--CCC---CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC--------CCCCCcccce
Q 024496           11 GKVIRCKAAICRI--PGK---PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP--------KLPLPVIFGH   77 (267)
Q Consensus        11 ~~~~~~~a~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~--------~~~~p~~~G~   77 (267)
                      ..|.+|+|+++..  .+.   .++++++|.|.++++||+||+.+++||++|++...+.....        ....+.++||
T Consensus         8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~   87 (393)
T cd08246           8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGS   87 (393)
T ss_pred             cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCcccccc
Confidence            4788999999863  332   27889999999999999999999999999998877652100        0012358999


Q ss_pred             eeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 024496           78 EAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSF  157 (267)
Q Consensus        78 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  157 (267)
                      |++|+|+++|++++.|++||+|++.+...|+.|..|..+.+++|+....   .|...                  ..|+|
T Consensus        88 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~------------------~~g~~  146 (393)
T cd08246          88 DASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYET------------------NYGSF  146 (393)
T ss_pred             ceEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccC------------------CCCcc
Confidence            9999999999999999999999999999999999999999999976433   22211                  11489


Q ss_pred             eeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHH--hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496          158 TEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKV--AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       158 a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      ++|++++..+++++|+++++++++.+.+.+.+||+++...  ++++++++|+|+|+ |++|++++++|+.+|+ ++++++
T Consensus       147 a~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~  225 (393)
T cd08246         147 AQFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVV  225 (393)
T ss_pred             eeEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEe
Confidence            9999999999999999999999999999999999986544  67899999999997 9999999999999999 777888


Q ss_pred             CChhhHHHHHHcCCCEEECCCC
Q 024496          235 INPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       235 ~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++++++.++++|+++++|+++
T Consensus       226 ~s~~~~~~~~~~G~~~~i~~~~  247 (393)
T cd08246         226 SSEEKAEYCRALGAEGVINRRD  247 (393)
T ss_pred             CCHHHHHHHHHcCCCEEEcccc
Confidence            8999999999999999999865

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1.2e-31  Score=242.54  Aligned_cols=214  Identities=29%  Similarity=0.434  Sum_probs=190.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      ||++++.+++....++++|.|.++++||+||+.++++|++|++.+.|..+.   ..|.++|||++|+|+++|+++++|++
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~~~~~   77 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVTSLKV   77 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCccCCC
Confidence            799999988874448999999999999999999999999999988887543   34678999999999999999999999


Q ss_pred             CCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||+|++.+ ..+|+.|.+|..+.+++|.....   .|...+|                   +|++|+.++..+++++|++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~  135 (338)
T PRK09422         78 GDRVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEG  135 (338)
T ss_pred             CCEEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCC
Confidence            99998755 46799999999999999976542   3444444                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++++.+.+.+.+||+++ ...+++++++|||+|+|++|++++++|+. +|+ +|+++++++++++.++++|++.+++
T Consensus       136 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~  213 (338)
T PRK09422        136 LDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTIN  213 (338)
T ss_pred             CCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEec
Confidence            99999999999999999976 77889999999999999999999999998 599 8999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       214 ~~~  216 (338)
T PRK09422        214 SKR  216 (338)
T ss_pred             ccc
Confidence            853

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=9.4e-32  Score=244.12  Aligned_cols=216  Identities=30%  Similarity=0.456  Sum_probs=184.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++.++++.+++.++|.|.|+++||+||++++++|++|++.+.+.. .......|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999988879999999999999999999999999999998766532 111114678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+..+..+|+.|.+|+.+.+++|+....   .+...+|                   +|++|+.++.++++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRPG-------------------AFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCCC-------------------cceeeEEechHHeEECcCC
Confidence            99999999999999999999999999977532   3333344                   8999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++++.+ ..+.++++++..  ...+|++|+|.|+|.+|++++++|+.+|+.+|+++++++++.+.++++|+++++++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~  215 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV  215 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence            999888755 466666665442  34689999999889999999999999999678888889999999999999999998


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       216 ~~  217 (341)
T PRK05396        216 AK  217 (341)
T ss_pred             cc
Confidence            76

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.6e-31  Score=246.34  Aligned_cols=223  Identities=30%  Similarity=0.436  Sum_probs=187.2

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++. ++++++|.|.+ +++||+||++++++|++|++.+.|.++ .  .+|.++|||++|+|+++|+++.+|+
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~--~~p~~~g~e~~G~V~~vG~~v~~~~   76 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-A--EPGLVLGHEAMGEVEEVGSAVESLK   76 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-C--CCCceeccccEEEEEEeCCCCCcCC
Confidence            68899988764 99999999996 799999999999999999999988765 2  4689999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||+|+..+..+|+.|.+|+.+.+++|.+...+.  +....|..+.          ....|+|++|+.++..  +++++|
T Consensus        77 ~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~--~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP  144 (375)
T cd08282          77 VGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGR--AGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLP  144 (375)
T ss_pred             CCCEEEEeCCCCCCCCHHHHCcCcccCCCCCccc--cccccccccc----------CCCCCeeeeEEEeecccCcEEECC
Confidence            9999999999999999999999999997643210  0000110000          0012589999999976  899999


Q ss_pred             CCCChh---hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          173 PHIPLG---IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       173 ~~~~~~---~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++++   +++.+.+.+.++|+++ ....+.+|++|+|.|+|.+|++++++|+++|+.+|+++++++++.++++++|+ 
T Consensus       145 ~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~-  222 (375)
T cd08282         145 DRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA-  222 (375)
T ss_pred             CCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC-
Confidence            999998   4677777899999976 78889999999999889999999999999998678889999999999999998 


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      ..+++++
T Consensus       223 ~~v~~~~  229 (375)
T cd08282         223 IPIDFSD  229 (375)
T ss_pred             eEeccCc
Confidence            4677766

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3.4e-31  Score=238.06  Aligned_cols=214  Identities=37%  Similarity=0.551  Sum_probs=190.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++..+++++.++++|.|.+.++||+|++.++++|++|++...|..+..  ..|.++|||++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~~G~~v~~~~~   78 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRG--KYPLILGHEIVGTVEEVGEGVERFKP   78 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCC--CCCeeccccceEEEEEECCCCccCCC
Confidence            6899998766668899999999999999999999999999999998876544  56889999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+......|+.|.+|+.+.+++|.+..   ..|....                   |+|++|++++...++++|+++
T Consensus        79 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~  136 (332)
T cd08259          79 GDRVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVD-------------------GGFAEYVKVPERSLVKLPDNV  136 (332)
T ss_pred             CCEEEECCCCCCcCChhhhCCCcccCCCcc---ccccccC-------------------CeeeeEEEechhheEECCCCC
Confidence            999999998999999999999999998752   2343333                   389999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++++++.+.+.+.+||+++.. ..+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|.+.+++.
T Consensus       137 ~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~  214 (332)
T cd08259         137 SDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDG  214 (332)
T ss_pred             CHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEec
Confidence            999999999999999997665 88999999999987 9999999999999999 88888888889888888898888765


Q ss_pred             C
Q 024496          255 A  255 (267)
Q Consensus       255 ~  255 (267)
                      +
T Consensus       215 ~  215 (332)
T cd08259         215 S  215 (332)
T ss_pred             H
Confidence            4

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-31  Score=241.70  Aligned_cols=213  Identities=31%  Similarity=0.398  Sum_probs=190.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++++++++++|.|.+.++||+||+.++++|++|++...|..+..  ++|.++|||++|+|+++|+.++.+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~   78 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRM--KYPVILGHEVVGTVEEVGENVKGFKP   78 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCC--CCCeeccccceEEEEEeCCCCccCCC
Confidence            7899999999889999999999999999999999999999999888876543  56889999999999999999988999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|++.+..+|+.|.+|..+.++.|.....   +|...+|                   +|++|+.++.+.++++|+++
T Consensus        79 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  136 (334)
T PRK13771         79 GDRVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNV  136 (334)
T ss_pred             CCEEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCC
Confidence            9999998888999999999999999987543   3333344                   89999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++.+++.+.+.+.++|+++... .+.++++|+|+|+ |.+|++++++|+.+|+ +++++++++++.+.++++ +++++++
T Consensus       137 ~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~  213 (334)
T PRK13771        137 SDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVG  213 (334)
T ss_pred             CHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCc
Confidence            9999999999999999976554 8999999999998 9999999999999999 889998889898888877 7666665


Q ss_pred             C
Q 024496          255 A  255 (267)
Q Consensus       255 ~  255 (267)
                      +
T Consensus       214 ~  214 (334)
T PRK13771        214 S  214 (334)
T ss_pred             h
Confidence            4

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.5e-31  Score=244.02  Aligned_cols=239  Identities=35%  Similarity=0.512  Sum_probs=197.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc---
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE---   92 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~---   92 (267)
                      |||+++..++.++++++.|.|.++++||+||+.++++|++|+....+.++.   .+|.++|||++|+|+.+|+++++   
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~---~~p~~~g~e~~G~v~~vG~~~~~~~~   77 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF---PPPFVLGHEISGEVVEVGPNVENPYG   77 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC---CCCcccccccceEEEEeCCCCCCCCc
Confidence            789999988777899999999999999999999999999999988886643   46789999999999999999988   


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC-CCCCCccccccCCceeccc--ccccceeeeEEeeccceE
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM-PRDGTSRFRELKGDVIHHF--LNISSFTEYSVVDITHVV  169 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~--~~~g~~a~y~~v~~~~~~  169 (267)
                      |++||+|+..+..+|+.|.+|..+.+++|+....++..+. ..+|...+.   ++...++  ...|+|++|+.++.++++
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (367)
T cd08263          78 LSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLF---RLDGGPVYMYSMGGLAEYAVVPATALA  154 (367)
T ss_pred             CCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCccccc---ccCCCccccccCCcceeEEEechhhEE
Confidence            9999999998888999999999999999987542111111 111100000   0000000  113689999999999999


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|+++++.+++.+++.+.+||+++.....+.++++|||+|+|.+|++++++|+.+|+..++++++++++.+.++++|++
T Consensus       155 ~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~  234 (367)
T cd08263         155 PLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGAT  234 (367)
T ss_pred             ECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCc
Confidence            99999999999999999999999887777889999999998899999999999999995599998899999999999999


Q ss_pred             EEECCCCCCcccc
Q 024496          250 DFINPATCGDKTV  262 (267)
Q Consensus       250 ~vi~~~~~~~~~~  262 (267)
                      .++++++  +++.
T Consensus       235 ~v~~~~~--~~~~  245 (367)
T cd08263         235 HTVNAAK--EDAV  245 (367)
T ss_pred             eEecCCc--ccHH
Confidence            9999877  5543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=5e-31  Score=244.88  Aligned_cols=223  Identities=22%  Similarity=0.193  Sum_probs=188.7

Q ss_pred             ccccceeEEeec--CCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC--------CCCCCC-cccce
Q 024496           12 KVIRCKAAICRI--PGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL--------PKLPLP-VIFGH   77 (267)
Q Consensus        12 ~~~~~~a~~~~~--~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--------~~~~~p-~~~G~   77 (267)
                      .|.+|||+++..  +++|   +++.++|.|.++++||+||+.++++|++|.+...+....        .....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            467899999965  4543   888999999999999999999999999998876554210        000123 37999


Q ss_pred             eeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 024496           78 EAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSF  157 (267)
Q Consensus        78 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  157 (267)
                      |++|+|+++|+.++.|++||+|++.+...|+.|++|+.+.+++|.....   .|..                  .+.|+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~------------------~~~g~~  142 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYE------------------TNFGSF  142 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---cccc------------------CCCccc
Confidence            9999999999999999999999999999999999999999999965432   1211                  112599


Q ss_pred             eeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHH--HhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496          158 TEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK--VAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       158 a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      ++|++++..+++++|+++++++++.+.+.+.+||+++..  ..++.++++|+|+|+ |.+|++++++|+++|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999997654  467899999999997 9999999999999999 778888


Q ss_pred             CChhhHHHHHHcCCCEEECCCC
Q 024496          235 INPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       235 ~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++++.+.++++|++.++|+++
T Consensus       222 ~~~~~~~~~~~~g~~~~v~~~~  243 (398)
T TIGR01751       222 SSPEKAEYCRELGAEAVIDRND  243 (398)
T ss_pred             CCHHHHHHHHHcCCCEEecCCC
Confidence            8899999999999999999865

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=5.4e-31  Score=238.60  Aligned_cols=212  Identities=33%  Similarity=0.558  Sum_probs=187.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||++++.++. +++.+++.|.++++||+|||.++++|+.|+....+..+..  .+|.++|+|++|+|+++|+++++|++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~--~~~~~~g~e~~G~V~~~G~~v~~~~~   77 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA--SYPRILGHELSGEVVEVGEGVAGLKV   77 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC--CCCcccccccEEEEEEeCCCCCCCCC
Confidence            68999988865 8899999999999999999999999999999988876554  56789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+..+..+|+.|..|+.+.+|+|.....   .++...                   |+|++|+.++.+ ++++|+++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~  134 (337)
T cd08261          78 GDRVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGL  134 (337)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCC
Confidence            9999998888999999999999999954432   222222                   389999999999 99999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++++ ..+.++++++ ...++.++++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.+.++++|++++++++
T Consensus       135 ~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~  211 (337)
T cd08261         135 SLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVG  211 (337)
T ss_pred             CHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCc
Confidence            99999877 4778888865 77889999999999889999999999999999 899998889999999999999999988


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       212 ~  212 (337)
T cd08261         212 D  212 (337)
T ss_pred             c
Confidence            7

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=1.1e-30  Score=235.50  Aligned_cols=215  Identities=30%  Similarity=0.460  Sum_probs=192.0

Q ss_pred             ceeEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           16 CKAAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        16 ~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      ||++++.+++.    ++++++.+.|.++++||+||+.++++|++|++...|..+..  ..|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~   78 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPP--KLPLIPGHEIVGRVEAVGPGVT   78 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCC--CCCccccccccEEEEEECCCCC
Confidence            78999998884    58888888888899999999999999999999988876543  5688999999999999999999


Q ss_pred             ccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||+|++.+. ..|+.|.+|..+.+++|....+   .|+..+|                   +|++|++++.+.+++
T Consensus        79 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~  136 (329)
T cd08298          79 RFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYP  136 (329)
T ss_pred             CCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEE
Confidence            9999999987654 6799999999999999987654   3443344                   899999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++.+++.+.+.+.+||+++ ..++++++++|+|+|+|++|++++++++..|+ +|+++++++++++.++++|++.
T Consensus       137 lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~  214 (329)
T cd08298         137 IPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADW  214 (329)
T ss_pred             CCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcE
Confidence            999999999999999999999976 88999999999999999999999999999998 8999999999999999999998


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      +++.++
T Consensus       215 ~~~~~~  220 (329)
T cd08298         215 AGDSDD  220 (329)
T ss_pred             EeccCc
Confidence            888764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.98  E-value=6.7e-31  Score=238.56  Aligned_cols=214  Identities=31%  Similarity=0.430  Sum_probs=184.5

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++. ++++++|.|.| +++||+||+.++++|++|+..+.|.++.   ..|.++|||++|+|+++|+++..++
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~   76 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT---RAPAPIGHEFVGVVEEVGSEVTSVK   76 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC---CCCcccccceEEEEEEeCCCCCccC
Confidence            78999998776 99999999996 8999999999999999999988877642   4578999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||+|+.....+|+.|.+|..++.++|.....   .+...+|                   +|++|++++..  .++++|
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP  134 (345)
T cd08287          77 PGDFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVP  134 (345)
T ss_pred             CCCEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECC
Confidence            99999886678899999999999999986432   3333444                   99999999975  999999


Q ss_pred             CCCChhhhh-----hcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          173 PHIPLGIAC-----LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       173 ~~~~~~~aa-----~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +++++..+.     .+.+.+.+||+++ ...++.++++|+|.|+|.+|++++++|+.+|+..++++++++++.++++++|
T Consensus       135 ~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g  213 (345)
T cd08287         135 GSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG  213 (345)
T ss_pred             CCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence            999872221     2235688899975 5788999999999988999999999999999967999999998999999999


Q ss_pred             CCEEECCCC
Q 024496          248 ITDFINPAT  256 (267)
Q Consensus       248 ~~~vi~~~~  256 (267)
                      +++++++++
T Consensus       214 a~~v~~~~~  222 (345)
T cd08287         214 ATDIVAERG  222 (345)
T ss_pred             CceEecCCc
Confidence            999999977

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=7.7e-31  Score=236.13  Aligned_cols=210  Identities=28%  Similarity=0.399  Sum_probs=181.1

Q ss_pred             ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++ +.+++++.+.|.++++||+||+.++++|++|+..+.+. ...  .+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~--~~~~~~g~e~~G~v~~vG~~v~~~~   77 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVK--PMPHIPGAEFAGVVEEVGDHVKGVK   77 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCC--CCCeecccceeEEEEEECCCCCCCC
Confidence            6899987766 34888888888889999999999999999999887642 222  4577899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+..+...|+.|.+|+.|.+++|.+...   .|...+|                   +|++|++++.+.++++|++
T Consensus        78 ~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~  135 (325)
T cd08264          78 KGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDS  135 (325)
T ss_pred             CCCEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCC
Confidence            99999999989999999999999999987542   3333333                   8999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++++.+.+.+.++|+++. ..+++++++|+|+|+ |++|++++++|+.+|+ +|+++.+    .+.++++|++++++
T Consensus       136 ~~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~  209 (325)
T cd08264         136 ISDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVD  209 (325)
T ss_pred             CCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeec
Confidence            999999999999999999765 488999999999997 9999999999999999 7877752    36667899988888


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus       210 ~~~  212 (325)
T cd08264         210 YDE  212 (325)
T ss_pred             chH
Confidence            754

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.98  E-value=1.1e-30  Score=239.49  Aligned_cols=219  Identities=24%  Similarity=0.379  Sum_probs=182.7

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCC
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      ....++++++..+.. +++++++.|.++++||+||++++++|++|++.+.+..... ....|.++|||++|+|+++|+++
T Consensus        14 ~~~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v   92 (364)
T PLN02702         14 VEEENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEV   92 (364)
T ss_pred             cccccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCC
Confidence            344455666666655 8888999888999999999999999999999887632111 11357899999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV  169 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~  169 (267)
                      ++|++||+|+..+..+|+.|+.|+.|.+++|++...   ++.. .+                   |+|++|++++...++
T Consensus        93 ~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~~~~-------------------g~~~~y~~v~~~~~~  150 (364)
T PLN02702         93 KHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATPPVH-------------------GSLANQVVHPADLCF  150 (364)
T ss_pred             CCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCCCCC-------------------CcccceEEcchHHeE
Confidence            999999999999999999999999999999986432   1111 12                   489999999999999


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|+++++.++++.. ++.++|+++ ...++.++++|+|+|+|++|++++++|+.+|+..++++++++++.++++++|++
T Consensus       151 ~~P~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~  228 (364)
T PLN02702        151 KLPENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGAD  228 (364)
T ss_pred             ECCCCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC
Confidence            999999999887632 455577765 778899999999999899999999999999997788999999999999999999


Q ss_pred             EEECCC
Q 024496          250 DFINPA  255 (267)
Q Consensus       250 ~vi~~~  255 (267)
                      ++++++
T Consensus       229 ~~~~~~  234 (364)
T PLN02702        229 EIVLVS  234 (364)
T ss_pred             EEEecC
Confidence            988754

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.98  E-value=1e-30  Score=237.17  Aligned_cols=221  Identities=29%  Similarity=0.382  Sum_probs=190.9

Q ss_pred             eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496           17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER   96 (267)
Q Consensus        17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   96 (267)
                      |+++.+..+..+++++++.|.++++||+||+.++++|++|++.+.+.....  .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPT--KYPLVPGHEIVGIVVAVGSKVTKFKVG   78 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCC--CCCcccCcceeeEEEEECCCCcccCCC
Confidence            578888888889999999999999999999999999999999998876443  578999999999999999999999999


Q ss_pred             CEEEe-eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           97 DLVLP-IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        97 d~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      |+|++ .....|++|++|+.+.+++|+.....+ .|....+              ....|+|++|+.++.+.++++|+++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~  143 (337)
T cd05283          79 DRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTY-NGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGL  143 (337)
T ss_pred             CEEEEecCCCCCCCCccccCCchhcCcchhhcc-cccccCC--------------CcCCCcceeEEEechhheEECCCCC
Confidence            99974 445689999999999999997754321 1111111              1112589999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++.+.+.+.+||+++ ...++.++++++|.|+|.+|++++++++.+|+ +|+++++++++.+.++++|++++++.+
T Consensus       144 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~  221 (337)
T cd05283         144 DSAAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATK  221 (337)
T ss_pred             CHHHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCc
Confidence            9999999999999999965 55679999999998889999999999999999 899999999999999999999999876


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       222 ~  222 (337)
T cd05283         222 D  222 (337)
T ss_pred             c
Confidence            5

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.98  E-value=8.1e-31  Score=244.52  Aligned_cols=208  Identities=24%  Similarity=0.317  Sum_probs=169.1

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhH-hcCCC-C---CCCCCCcccceeeEEEEEEecC
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW-KSSTD-L---PKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~-~---~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |+||++++..++. ++++++|.|.|+++||+|||.++|||++|++.+ .|... .   ....+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            6799999999886 999999999999999999999999999999976 45321 1   0014688999999999999999


Q ss_pred             CCc-ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc-
Q 024496           89 YVE-EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT-  166 (267)
Q Consensus        89 ~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~-  166 (267)
                      +++ +|++||||++.+...|+.|.+|..              .|...+|                   +|+||++++.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 699999999988888998887720              2222344                   99999999987 


Q ss_pred             ---ceEEcCCCCChhhhhhcc---hhhhhHHHHH--------HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcC--CCe
Q 024496          167 ---HVVKITPHIPLGIACLLS---CGVSTGVGAA--------WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNR--ASK  229 (267)
Q Consensus       167 ---~~~~iP~~~~~~~aa~l~---~~~~ta~~a~--------~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g--~~~  229 (267)
                         +++++|+++++++++++.   +. .+++.++        .+..++++|++|+|+|+ |++|++++|+|+.+|  +.+
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~  205 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSL  205 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCce
Confidence               689999999999988652   22 2234332        24578899999999985 999999999999975  458


Q ss_pred             EEEEcCChhhHHHHHHc--------CCC-EEECCCC
Q 024496          230 IIGVDINPEKFEIGKKF--------GIT-DFINPAT  256 (267)
Q Consensus       230 vi~~~~~~~~~~~~~~~--------G~~-~vi~~~~  256 (267)
                      |++++++++|++.++++        |++ .++|+++
T Consensus       206 Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~  241 (410)
T cd08238         206 LVVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT  241 (410)
T ss_pred             EEEEcCCHHHHHHHHHhccccccccCceEEEECCCc
Confidence            99999999999999997        776 5788754

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.98  E-value=8.5e-31  Score=242.24  Aligned_cols=217  Identities=28%  Similarity=0.460  Sum_probs=183.1

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC------CCCCCCCCcccceeeEEEEEEec
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST------DLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      .++.+.++.. . +++++++|.|.++++||+||+.++++|++|++.+.+..      +.. ..+|.++|||++|+|+++|
T Consensus        27 ~~~~~~~~~~-~-~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~-~~~~~~~g~e~~G~V~~vG  103 (384)
T cd08265          27 TNLGSKVWRY-P-ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGL-TEFPVVIGHEFSGVVEKTG  103 (384)
T ss_pred             ccceeEEEeC-C-CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcc-cCCCcccccceEEEEEEEC
Confidence            3455555553 3 49999999999999999999999999999998876421      111 1568899999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +++++|++||+|++.+..+|+.|+.|..+.+++|.....   .|+..+|                   +|++|+.++.+.
T Consensus       104 ~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~  161 (384)
T cd08265         104 KNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARY  161 (384)
T ss_pred             CCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHH
Confidence            999999999999999999999999999999999976442   3333344                   899999999999


Q ss_pred             eEEcCCC-------CChhhhhhcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          168 VVKITPH-------IPLGIACLLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       168 ~~~iP~~-------~~~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++|++       ++++ ++.+..++++||+++... .++++|++|+|+|+|.+|++++++|+.+|+.+|+++++++++
T Consensus       162 ~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~  240 (384)
T cd08265         162 AWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEER  240 (384)
T ss_pred             eEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            9999986       3455 445556889999987666 689999999999889999999999999999789999999999


Q ss_pred             HHHHHHcCCCEEECCCC
Q 024496          240 FEIGKKFGITDFINPAT  256 (267)
Q Consensus       240 ~~~~~~~G~~~vi~~~~  256 (267)
                      .++++++|+++++++++
T Consensus       241 ~~~~~~~g~~~~v~~~~  257 (384)
T cd08265         241 RNLAKEMGADYVFNPTK  257 (384)
T ss_pred             HHHHHHcCCCEEEcccc
Confidence            99999999999999875

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.98  E-value=1.1e-30  Score=236.95  Aligned_cols=217  Identities=29%  Similarity=0.408  Sum_probs=186.1

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++..++. +++++++.|.| +++||+||+.++++|+.|+....|.++.   ..|.++|||++|+|+++|+++++++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~vG~~v~~~~   76 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS---TPGFVLGHEFVGEVVEVGPEVRTLK   76 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC---CCCcccccceEEEEEeeCCCccccC
Confidence            68999987754 99999999998 4999999999999999999988876652   4578899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||+|+..+.+.|+.|.+|+.+.++.|++...   .|....               ....|+|++|+.++.+  .++++|
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------~~~~g~~~~~~~v~~~~~~~~~~p  138 (344)
T cd08284          77 VGDRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYAGS---------------PNLDGAQAEYVRVPFADGTLLKLP  138 (344)
T ss_pred             CCCEEEEcccCCCCCChHHhCcCcccCCCCcc---cccccc---------------CCCCCceeEEEEcccccCceEECC
Confidence            99999998889999999999999999976532   111000               0112489999999865  999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++++.+.+.+.+||+++. ...+.++++|+|+|+|.+|++++++|+.+|+.+|+++++.+++.+.++++|+. ++
T Consensus       139 ~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~  216 (344)
T cd08284         139 DGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PI  216 (344)
T ss_pred             CCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EE
Confidence            99999999999999999999764 58899999999998899999999999999976899998889999999999975 56


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +++.
T Consensus       217 ~~~~  220 (344)
T cd08284         217 NFED  220 (344)
T ss_pred             ecCC
Confidence            6655

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.98  E-value=1.7e-30  Score=235.61  Aligned_cols=219  Identities=30%  Similarity=0.453  Sum_probs=191.2

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      ||++++.+++. +.+++.+.|.+.+++|+||+.++++|+.|+....+.+...  ..|.++|+|++|+|+++|++++.|++
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~--~~~~~~g~~~~G~V~~~G~~v~~~~~   77 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDL--KPPRILGHEIAGEIVEVGDGVTGFKV   77 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccC--CCCcccccceEEEEEeeCCCCCCCCC
Confidence            68999988875 8999999998999999999999999999999988876422  45789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc-----eEE
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH-----VVK  170 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~-----~~~  170 (267)
                      ||+|+..+...|+.|+.|.+++.++|.....   .|...+                   |+|++|++++.++     +++
T Consensus        78 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~  135 (343)
T cd08235          78 GDRVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLK  135 (343)
T ss_pred             CCEEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEE
Confidence            9999999999999999999999999977543   233333                   3999999999998     999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++.+++.+ +.+.+||+++. ..++.++++|+|+|+|.+|++++++|+.+|++.|+++.+++++.+.++++|.++
T Consensus       136 lP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~  213 (343)
T cd08235         136 LPDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY  213 (343)
T ss_pred             CCCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcE
Confidence            9999999999876 68889999764 558999999999988999999999999999944899998999999999999999


Q ss_pred             EECCCCCCccccc
Q 024496          251 FINPATCGDKTVS  263 (267)
Q Consensus       251 vi~~~~~~~~~~~  263 (267)
                      ++++++  +++.+
T Consensus       214 ~~~~~~--~~~~~  224 (343)
T cd08235         214 TIDAAE--EDLVE  224 (343)
T ss_pred             EecCCc--cCHHH
Confidence            999887  55433

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.97  E-value=3e-30  Score=232.79  Aligned_cols=214  Identities=31%  Similarity=0.466  Sum_probs=190.0

Q ss_pred             eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496           17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER   96 (267)
Q Consensus        17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   96 (267)
                      |++++.+++..+++++.|.|.+.+++|+|++.++++|++|+..+.+.....  .+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~--~~p~~~g~e~~G~v~~~g~~~~~~~~G   78 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGS--KYPLVPGHEIVGEVVEVGAGVEGRKVG   78 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCC--CCCcccCccceEEEEEECCCCcccccC
Confidence            688998886669999999999999999999999999999999998876433  568899999999999999999999999


Q ss_pred             CEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           97 DLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        97 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      |+|++.+. ..|++|++|.++.+++|++...   .++..+|                   +|++|+.++.++++++|+++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~  136 (330)
T cd08245          79 DRVGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGL  136 (330)
T ss_pred             CEEEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCC
Confidence            99987554 6799999999999999998543   3332333                   89999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++.+++.+.+.+.+||+++. ..++.++++|+|+|+|.+|++++++|+.+|+ +|+++++++++.+.++++|++.+++..
T Consensus       137 ~~~~~~~l~~~~~ta~~~l~-~~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  214 (330)
T cd08245         137 PLAQAAPLLCAGITVYSALR-DAGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSG  214 (330)
T ss_pred             CHHHhhhhhhhHHHHHHHHH-hhCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccC
Confidence            99999999989999999764 4789999999999988899999999999999 899999999999999999999998876


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       215 ~  215 (330)
T cd08245         215 A  215 (330)
T ss_pred             C
Confidence            5

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.97  E-value=3.1e-30  Score=232.65  Aligned_cols=217  Identities=32%  Similarity=0.491  Sum_probs=193.9

Q ss_pred             ceeEEeecCCCC-eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKP-LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~-~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++++ +.+.+.+.|.+.+++|+|++.++++|+.|.....+..+... ++|.++|+|++|+|+.+|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~-~~~~~~g~~~~G~v~~~G~~v~~~~   79 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLT-KLPLTLGHEIAGTVVEVGAGVTNFK   79 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccC-CCCEeccccccEEEEEECCCCccCC
Confidence            799999999987 67788888889999999999999999999999988765221 5678999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+..+..+|+.|.+|..+..+.|.....   .|...+                   |+|++|+.++.+.++++|++
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~  137 (338)
T cd08254          80 VGDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGID-------------------GGFAEYIVVPARALVPVPDG  137 (338)
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccC-------------------CcceeeEEechHHeEECCCC
Confidence            99999999999999999999999999965432   233333                   38999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++.+++.+...+.+||+++.....+.++++|||.|+|.+|++++++|+.+|+ +|+++++++++.+.++++|.+++++.
T Consensus       138 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~  216 (338)
T cd08254         138 VPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNS  216 (338)
T ss_pred             CCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcC
Confidence            99999999999999999987777789999999999889999999999999999 79999999999999999999999987


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       217 ~~  218 (338)
T cd08254         217 LD  218 (338)
T ss_pred             CC
Confidence            76

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=3.3e-30  Score=231.58  Aligned_cols=217  Identities=27%  Similarity=0.405  Sum_probs=189.3

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++...+.+  +++.+.+.|.+.+++|+|++.++++|++|+..+.|..... ...|.++|||++|+|+++|++++.|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~   79 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIK-LPLPHILGSDGAGVVEAVGPGVTNV   79 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCC-CCCCeecccceEEEEEEeCCCCCCC
Confidence            689998844432  7777888888899999999999999999999888765422 1467899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|++.+...|+.|.+|..+.+++|.....   .|....|                   ++++|+.++.+.++++|+
T Consensus        80 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~  137 (342)
T cd08266          80 KPGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPD  137 (342)
T ss_pred             CCCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCC
Confidence            999999999999999999999999999986432   3333333                   899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+++.+.++|+++.+...+.++++++|+|+ +.+|++++++++.+|+ +|+++++++++.+.+.++|.+.++
T Consensus       138 ~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~  216 (342)
T cd08266         138 NLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVI  216 (342)
T ss_pred             CCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEE
Confidence            99999999999899999998778889999999999988 7999999999999999 799999999999998888888888


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +..+
T Consensus       217 ~~~~  220 (342)
T cd08266         217 DYRK  220 (342)
T ss_pred             ecCC
Confidence            7655

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.97  E-value=5.8e-30  Score=230.04  Aligned_cols=207  Identities=22%  Similarity=0.396  Sum_probs=181.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++. +++++++.|.++++||+||+.++++|++|.....|.++     .|.++|||++|+|+++|++   +++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~---~~~   71 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA---ELV   71 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC---CCC
Confidence            68999988764 99999999999999999999999999999999887653     5688999999999999988   789


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC-CCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM-PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||+|...+..+|+.|.+|..+..+.|+....   .++ ..+|                   +|++|++++.++++++|++
T Consensus        72 G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~  129 (319)
T cd08242          72 GKRVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRDG-------------------AFAEYLTLPLENLHVVPDL  129 (319)
T ss_pred             CCeEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCCC-------------------ceEEEEEechHHeEECcCC
Confidence            9999999988999999999999999877543   333 1233                   8999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++.++++.+ ..+.+++. +.+..+++++++|+|+|+|.+|++++|+|+.+|+ +|+++++++++.+.++++|++.++++
T Consensus       130 ~~~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~  206 (319)
T cd08242         130 VPDEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPD  206 (319)
T ss_pred             CCHHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCc
Confidence            999888764 35556666 5577889999999999989999999999999999 69999999999999999999988887


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       207 ~~  208 (319)
T cd08242         207 EA  208 (319)
T ss_pred             cc
Confidence            55

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.97  E-value=4.8e-30  Score=233.20  Aligned_cols=215  Identities=31%  Similarity=0.490  Sum_probs=183.6

Q ss_pred             eEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcC-CCCCCCCCCcccceeeEEEEEEecCCCcccCCC
Q 024496           18 AAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSS-TDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER   96 (267)
Q Consensus        18 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   96 (267)
                      ++++.++.. +.+++.+.|.+.++||+||+.++++|+.|++.+.+. .......+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467788855 999999999999999999999999999999876422 111101357789999999999999999999999


Q ss_pred             CEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCC
Q 024496           97 DLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIP  176 (267)
Q Consensus        97 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~  176 (267)
                      |+|++.+..+|++|++|+.|.+++|++..+.  .....+                   |+|++|++++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999989999999999999999999875331  011122                   3899999999999999999999


Q ss_pred             hhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          177 LGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       177 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++++.+ .++++|++++ ....++++++|+|.|+|.+|++++++|+.+|++.|+++++++++.+.++++|+++++++++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  216 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT  216 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence            9999877 4788999875 7889999999999988999999999999999955999998999999999999999999877

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.97  E-value=9.1e-30  Score=230.79  Aligned_cols=216  Identities=30%  Similarity=0.473  Sum_probs=190.8

Q ss_pred             ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++..++ ..+++++++.|.+.++||+||+.++++|++|...+.+.++.+. ..|.++|||++|+|+++|++++.|+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~vG~~~~~~~   79 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKP-KLPLIGGHEGAGVVVAVGPGVSGLK   79 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCC-CCCccCCcccceEEEEeCCCCCCCC
Confidence            7899998877 3389999999999999999999999999999998888765331 4577899999999999999999999


Q ss_pred             CCCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||+|+..+ ...|+.|.+|..+.+++|.....   .|+...|                   ++++|+.++.+.++++|+
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~  137 (341)
T cd08297          80 VGDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPD  137 (341)
T ss_pred             CCCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCC
Confidence            999998876 57799999999999999977543   3433344                   899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+.+.+.+||+++.. .+++++++|||+|+ +.+|++++++|+.+|+ +|+++.+++++.+.++++|+++++
T Consensus       138 ~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~  215 (341)
T cd08297         138 GLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFV  215 (341)
T ss_pred             CCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEE
Confidence            99999999999999999997654 58999999999987 6799999999999999 899999999999999999999999


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      ++++
T Consensus       216 ~~~~  219 (341)
T cd08297         216 DFKK  219 (341)
T ss_pred             cCCC
Confidence            9877

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=9.3e-30  Score=230.71  Aligned_cols=205  Identities=23%  Similarity=0.392  Sum_probs=177.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCC---------CCCCCCCcccceeeEEEEEEe
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD---------LPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      |||+++..+  ++++++++.|+++++||+||+.++++|+.|++...|...         .....+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999866  599999999999999999999999999999999887321         001135789999999999999


Q ss_pred             cCCCcc-cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           87 GEYVEE-VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        87 G~~v~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      |+++++ |++||+|+..+...|+.|++|..+..             ...+                   |+|++|++++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~-------------~~~~-------------------g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLS-------------PEAP-------------------GGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCC-------------cCCC-------------------CceeeeEEech
Confidence            999987 99999999999999999999932210             0122                   48999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++++|+++++++++ +.+++++||++ ....+++++++|||+|+|.+|.+++|+|+.+|++.++++++++++.+.+++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999999887 55688899997 578899999999999889999999999999999778888889999999999


Q ss_pred             cCCCEEECCCC
Q 024496          246 FGITDFINPAT  256 (267)
Q Consensus       246 ~G~~~vi~~~~  256 (267)
                      +|+++++++++
T Consensus       205 ~g~~~~i~~~~  215 (341)
T cd08262         205 MGADIVVDPAA  215 (341)
T ss_pred             cCCcEEEcCCC
Confidence            99999999876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.97  E-value=5.4e-30  Score=230.32  Aligned_cols=192  Identities=18%  Similarity=0.258  Sum_probs=153.6

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCC-hhhHHhHhcCCCCCC-CCCCcccceeeEEEEEEecCCCcc
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLC-HSDVTFWKSSTDLPK-LPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      +||++++..++. ++++++|.|.|+++||||||.+++|| ++|++.+.|.++... ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            588999998876 99999999999999999999999996 799998888764321 2579999999999999999998 6


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||++.    |..|..|..               |  .+                   |+|+||+.+|.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~---------------~--~~-------------------G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVR---------------G--LF-------------------GGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Ccccccccc---------------c--cC-------------------CcccceEEcCHHHceeCC
Confidence            9999999873    223322210               0  12                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++. +.+. ..++||+++.+ . ..++++|+|+|+|++|++++|+|+++|++.|++++.++++++.+.++   .++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i  191 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL  191 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence            9998864 4444 57899997643 3 34688999999999999999999999997788888888887776543   445


Q ss_pred             CCC
Q 024496          253 NPA  255 (267)
Q Consensus       253 ~~~  255 (267)
                      |++
T Consensus       192 ~~~  194 (308)
T TIGR01202       192 DPE  194 (308)
T ss_pred             Chh
Confidence            543

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.97  E-value=6.4e-30  Score=230.66  Aligned_cols=195  Identities=23%  Similarity=0.273  Sum_probs=165.9

Q ss_pred             ceeEEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           16 CKAAICRIPGKP-----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        16 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      ||++++..++.|     +++.++|.|.|+++||+||+.++++|++|++.+.|.++... .+|.++|||++|+|+++|+++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~-~~p~v~G~e~~G~V~~vG~~v   79 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTK-ALPVPPGFEGSGTVVAAGGGP   79 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCC-CCCcCCCcceEEEEEEECCCc
Confidence            789999988853     78889999999999999999999999999999988765322 578999999999999999999


Q ss_pred             cc-cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496           91 EE-VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV  169 (267)
Q Consensus        91 ~~-~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~  169 (267)
                      ++ |++||+|+....                             .+                   |+|++|+++|.++++
T Consensus        80 ~~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~  111 (324)
T cd08291          80 LAQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCL  111 (324)
T ss_pred             cccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeE
Confidence            96 999999976321                             02                   389999999999999


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE--cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF--GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~--G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      ++|+++++++++.+.+...+||. +...... ++++++|+  |+|++|++++|+|+++|+ +|+++++++++++.++++|
T Consensus       112 ~iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g  188 (324)
T cd08291         112 PLPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIG  188 (324)
T ss_pred             ECCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcC
Confidence            99999999999988878889976 4555555 56666665  459999999999999999 8999999999999999999


Q ss_pred             CCEEECCCCCCcccccc
Q 024496          248 ITDFINPATCGDKTVSQ  264 (267)
Q Consensus       248 ~~~vi~~~~~~~~~~~~  264 (267)
                      +++++++++  +++.++
T Consensus       189 ~~~~i~~~~--~~~~~~  203 (324)
T cd08291         189 AEYVLNSSD--PDFLED  203 (324)
T ss_pred             CcEEEECCC--ccHHHH
Confidence            999999887  655443

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.97  E-value=2.2e-29  Score=227.30  Aligned_cols=213  Identities=33%  Similarity=0.548  Sum_probs=190.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.+++. +++.+.+.|.+.++||+||+.++++|+.|+....|.++.   .+|.++|+|++|+|+++|+++++|++
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~~~~~   76 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVTGFKV   76 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCCCCCC
Confidence            78999998875 999999999999999999999999999999998887653   36789999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+..+...|+.|.+|..+.+++|+....   .|...+|                   +|++|++++.++++++|+++
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~  134 (334)
T cd08234          77 GDRVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNL  134 (334)
T ss_pred             CCEEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCC
Confidence            9999998888999999999999999977642   3333344                   89999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++.+++.+ +.+.++++++ ...++.++++|+|+|+|.+|.+++++|+.+|++.|+++++++++.+.++++|++++++++
T Consensus       135 ~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~  212 (334)
T cd08234         135 SFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPS  212 (334)
T ss_pred             CHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCC
Confidence            99998776 6788898876 788999999999998899999999999999995589999999999999999999899887


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       213 ~  213 (334)
T cd08234         213 R  213 (334)
T ss_pred             C
Confidence            6

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.97  E-value=1.7e-29  Score=228.88  Aligned_cols=216  Identities=26%  Similarity=0.454  Sum_probs=179.4

Q ss_pred             EeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHh-cCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCE
Q 024496           20 ICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDL   98 (267)
Q Consensus        20 ~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~   98 (267)
                      ++++.+. +++++.+.|.++++||+||+.++++|++|+.... +........+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4556655 9999999999999999999999999999988763 4332111145778999999999999999999999999


Q ss_pred             EEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCCh
Q 024496           99 VLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL  177 (267)
Q Consensus        99 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~  177 (267)
                      |+..+...|++|.+|..|..+.|....+   ++.. .+.               +..|+|++|++++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~---------------~~~g~~~~~v~v~~~~~~~iP~~~~~  142 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRFP---------------HVQGGFREYLVVDASQCVPLPDGLSL  142 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeeccccC---------------CCCCceeeEEEechHHeEECcCCCCH
Confidence            9999999999999999999999987532   1110 000               01249999999999999999999999


Q ss_pred             hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      ++|+. ..++.++|+++...... ++++|||.|+|.+|++++++|+.+|+.+++++++++++.++++++|+++++++++
T Consensus       143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~  219 (339)
T cd08232         143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR  219 (339)
T ss_pred             HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc
Confidence            99876 46888999876554445 9999999988999999999999999977999999999999989999999998865

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.97  E-value=1.6e-29  Score=229.29  Aligned_cols=213  Identities=30%  Similarity=0.528  Sum_probs=188.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++++.+. +.+++.+.|.++++||+||+.++++|+.|+....+.+..   ..|.++|+|++|+|+.+|++++.|++
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~~---~~~~~~g~~~~G~V~~~g~~v~~~~~   76 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY---HPPLVLGHEFSGTVEEVGSGVDDLAV   76 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCCC---CCCcccCcceEEEEEEECCCCCcCCC
Confidence            78999998876 899999999999999999999999999999988776522   45788999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|+..+...|+.|++|..+.+..|+....   +|...+                   |+|++|+.++.++++++|+++
T Consensus        77 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lP~~~  134 (343)
T cd08236          77 GDRVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRD-------------------GAFAEYVSVPARNLIKIPDHV  134 (343)
T ss_pred             CCEEEEcCCCCCCCChhHHCcChhhCCCcce---EecccC-------------------CcccceEEechHHeEECcCCC
Confidence            9999999888999999999999999977532   333333                   399999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++++.+ ..+.++|+++. ...+.++++|+|+|+|.+|++++++|+.+|+..|+++++++++.+.++++|++++++++
T Consensus       135 ~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~  212 (343)
T cd08236         135 DYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPK  212 (343)
T ss_pred             CHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCc
Confidence            99999887 57889999764 78899999999998899999999999999995599999899999999999999999987


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus       213 ~  213 (343)
T cd08236         213 E  213 (343)
T ss_pred             c
Confidence            6

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd05281 TDH Threonine dehydrogenase

Probab=99.97  E-value=1.6e-29  Score=229.70  Aligned_cols=216  Identities=33%  Similarity=0.488  Sum_probs=182.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++..++..+.+.+.+.|.|.++||+||+.++++|+.|+..+.+.. .......|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999888669999999999999999999999999999998765432 111114567899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+..+.++|+.|.+|..+.+++|.....   .|....                   |+|++|++++.++++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTKI---LGVDTD-------------------GCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccce---EeccCC-------------------CcceEEEEechHHcEECcCC
Confidence            99999999999999999999999999975422   333333                   48999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++++.+ .+...+.++++++.  ...+++++|+|.|+|.+|++++++|+.+|+.+|++++++++|.++++++|+++++++
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  215 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP  215 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence            998555 45557788887654  456789999999889999999999999998678888888999999999999999987


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      +.
T Consensus       216 ~~  217 (341)
T cd05281         216 RE  217 (341)
T ss_pred             cc
Confidence            66

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.97  E-value=2e-29  Score=226.21  Aligned_cols=217  Identities=28%  Similarity=0.468  Sum_probs=184.4

Q ss_pred             ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++++++ .++++++++.|.+.++||+||+.++++|++|.+...+.+...  ..|.++|+|++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~   78 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPV--ETPVVLGHEFSGTIVEVGPDVEGWK   78 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcC--CCCeeeccceEEEEEEECCCcCcCC
Confidence            5788888655 348999999999999999999999999999999888876333  4578999999999999999999999


Q ss_pred             CCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||+|+..+. .+|+.|++|..+..+.|+...   +.|...+                   |+|++|++++..+++++|+
T Consensus        79 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~lp~  136 (306)
T cd08258          79 VGDRVVSETTFSTCGRCPYCRRGDYNLCPHRK---GIGTQAD-------------------GGFAEYVLVPEESLHELPE  136 (306)
T ss_pred             CCCEEEEccCcCCCCCCcchhCcCcccCCCCc---eeeecCC-------------------CceEEEEEcchHHeEECcC
Confidence            9999998775 679999999999999997642   1233333                   3999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChhhHHHHHHcCCCEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGV--DINPEKFEIGKKFGITDF  251 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~G~~~v  251 (267)
                      ++++++++ +...+.++|+++.....++++++|||.|+|.+|++++++|+.+|+ +|+++  +++.++.++++++|++++
T Consensus       137 ~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~  214 (306)
T cd08258         137 NLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV  214 (306)
T ss_pred             CCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc
Confidence            99999887 555788999988888899999999998889999999999999999 77776  345567888889999888


Q ss_pred             ECCCCCCccc
Q 024496          252 INPATCGDKT  261 (267)
Q Consensus       252 i~~~~~~~~~  261 (267)
                       +++.  +++
T Consensus       215 -~~~~--~~~  221 (306)
T cd08258         215 -NGGE--EDL  221 (306)
T ss_pred             -CCCc--CCH
Confidence             7766  544

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.97  E-value=8.8e-30  Score=225.86  Aligned_cols=167  Identities=22%  Similarity=0.397  Sum_probs=143.2

Q ss_pred             ccceeeEEEEEEecCCCc------ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCce
Q 024496           74 IFGHEAVGVVESVGEYVE------EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDV  147 (267)
Q Consensus        74 ~~G~e~~G~V~~vG~~v~------~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~  147 (267)
                      ++|||++|+|+++|++|+      +|++||||++.+..+|+.|++|+.|+++.|++...   .|....+           
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-----------   66 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALD-----------   66 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCccccc-----------
Confidence            589999999999999999      89999999999999999999999999999987543   2221100           


Q ss_pred             ecccccccceeeeEEeecc-ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC
Q 024496          148 IHHFLNISSFTEYSVVDIT-HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR  226 (267)
Q Consensus       148 ~~~~~~~g~~a~y~~v~~~-~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g  226 (267)
                       ..+...|+|+||+++|.+ +++++|+++++++++.+.+.+.|+|+++ +.....++++|||+|+|++|++++|+|+++|
T Consensus        67 -~~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        67 -SGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             -CCccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence             000012499999999997 7999999999999999998999999965 5566679999999999999999999999999


Q ss_pred             CCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          227 ASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       227 ~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++|++++++++|+++++++|+++++++++
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~  174 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATALAEPEV  174 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcEecCchh
Confidence            966999999999999999999999998754

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=1.6e-29  Score=217.95  Aligned_cols=201  Identities=25%  Similarity=0.333  Sum_probs=175.9

Q ss_pred             CCCcCccccceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEE
Q 024496            7 SPKAGKVIRCKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV   83 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V   83 (267)
                      .+++-++...|++++..+++|   +++++++.|.+..++|+||.+++.|||+|+..++|.++..+ ++|.+-|+|++|.|
T Consensus        11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP-~~PAVgGnEGv~eV   89 (354)
T KOG0025|consen   11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRP-ELPAVGGNEGVGEV   89 (354)
T ss_pred             ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCC-CCCcccCCcceEEE
Confidence            334457788999999999999   67888999988788899999999999999999999999775 88999999999999


Q ss_pred             EEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           84 ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        84 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      +.+|+++++|++||.|+....                                                +.|+|++|.+.
T Consensus        90 v~vGs~vkgfk~Gd~VIp~~a------------------------------------------------~lGtW~t~~v~  121 (354)
T KOG0025|consen   90 VAVGSNVKGFKPGDWVIPLSA------------------------------------------------NLGTWRTEAVF  121 (354)
T ss_pred             EEecCCcCccCCCCeEeecCC------------------------------------------------CCccceeeEee
Confidence            999999999999999987543                                                12599999999


Q ss_pred             eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +++.++++++.+++++||.+.+.-+|||+.+.+..++++||+|+-.|+ +.+|++.+|+|++.|++ .|-+.|+....+.
T Consensus       122 ~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gik-tinvVRdR~~iee  200 (354)
T KOG0025|consen  122 SESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIK-TINVVRDRPNIEE  200 (354)
T ss_pred             cccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcc-eEEEeecCccHHH
Confidence            999999999999999999999999999998888889999999999998 99999999999999994 4445456544444


Q ss_pred             ----HHHcCCCEEECCCCC
Q 024496          243 ----GKKFGITDFINPATC  257 (267)
Q Consensus       243 ----~~~~G~~~vi~~~~~  257 (267)
                          ++.+||++||...++
T Consensus       201 l~~~Lk~lGA~~ViTeeel  219 (354)
T KOG0025|consen  201 LKKQLKSLGATEVITEEEL  219 (354)
T ss_pred             HHHHHHHcCCceEecHHHh
Confidence                456999999976653

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.97  E-value=4.3e-29  Score=224.11  Aligned_cols=193  Identities=24%  Similarity=0.242  Sum_probs=169.1

Q ss_pred             ceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |||+++.+++.+   ++++++|.|.+.++||+|||.++++|+.|+..+.|.++... .+|.++|||++|+|+++|+++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~-~~p~~~G~e~~G~V~~~G~~v~~   79 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKP-ELPAIGGSEAVGVVDAVGEGVKG   79 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCC-CCCCCCCcceEEEEEEeCCCCCC
Confidence            689999887754   77899999999999999999999999999999988765321 56889999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||+|+..+.                              .                   |+|++|+.++...++++|
T Consensus        80 ~~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~ip  110 (324)
T cd08292          80 LQVGQRVAVAPV------------------------------H-------------------GTWAEYFVAPADGLVPLP  110 (324)
T ss_pred             CCCCCEEEeccC------------------------------C-------------------CcceeEEEEchHHeEECC
Confidence            999999976421                              1                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++++++.+.+.+.++|+++ ....+.+|++|||+|+ |.+|++++++|+.+|+ +++++..+.++.+.++++|++++
T Consensus       111 ~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~  188 (324)
T cd08292         111 DGISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPV  188 (324)
T ss_pred             CCCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEE
Confidence            9999999999888889999865 5688999999999987 9999999999999999 88888888888888888999999


Q ss_pred             ECCCCCCcccc
Q 024496          252 INPATCGDKTV  262 (267)
Q Consensus       252 i~~~~~~~~~~  262 (267)
                      +++++  +++.
T Consensus       189 ~~~~~--~~~~  197 (324)
T cd08292         189 VSTEQ--PGWQ  197 (324)
T ss_pred             EcCCC--chHH
Confidence            99876  5443

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.96  E-value=1.3e-28  Score=223.54  Aligned_cols=183  Identities=19%  Similarity=0.170  Sum_probs=150.6

Q ss_pred             eEEEEeecCCCC-CCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccC
Q 024496           28 LVIEEIEVEPPK-AWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHR  105 (267)
Q Consensus        28 ~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  105 (267)
                      ++++++|.|.|. ++||||||.++|||+.|......... .....+|.++|||++|+|+++|+++++|++||+|+...  
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--  100 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--  100 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--
Confidence            788999999874 99999999999999998643321111 00014678999999999999999999999999996420  


Q ss_pred             CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhh----hh
Q 024496          106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI----AC  181 (267)
Q Consensus       106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~----aa  181 (267)
                                                                       ++|+||++++.++++++|+++++.+    ++
T Consensus       101 -------------------------------------------------~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         101 -------------------------------------------------WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             -------------------------------------------------CCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                             2799999999999999999864332    44


Q ss_pred             hcchhhhhHHHHHHHHhCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCCCC
Q 024496          182 LLSCGVSTGVGAAWKVAGVEVG--STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPATC  257 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~~~  257 (267)
                      .+.+++.+||+++.+..+++++  ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+.+++ +|+++++++++ 
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-  210 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-  210 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence            5667899999987777788877  99999987 9999999999999998679999999999999876 99999999987 


Q ss_pred             Cccccc
Q 024496          258 GDKTVS  263 (267)
Q Consensus       258 ~~~~~~  263 (267)
                       +++.+
T Consensus       211 -~~~~~  215 (345)
T cd08293         211 -DNVAE  215 (345)
T ss_pred             -CCHHH
Confidence             55544

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.96  E-value=1.3e-28  Score=223.48  Aligned_cols=210  Identities=30%  Similarity=0.472  Sum_probs=179.3

Q ss_pred             ecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCC-CCCCCCCcccceeeEEEEEEecCCCcccCCCCEEE
Q 024496           22 RIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD-LPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVL  100 (267)
Q Consensus        22 ~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~  100 (267)
                      ++++.+++++++|.|.|.++||+||+.++++|+.|+..+.+... ....++|.++|+|++|+|+++|+++++|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            56888899999999999999999999999999999988765421 11114577899999999999999999999999999


Q ss_pred             eeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhh
Q 024496          101 PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA  180 (267)
Q Consensus       101 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~a  180 (267)
                      ..+...|+.|..|..+..++|++..+   .|+...|                   +|++|++++.+.++++|++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------CFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCCC-------------------cceeEEEeehHHcEECcCCCChHhh
Confidence            99999999999999999999988643   2332333                   8999999999999999999998665


Q ss_pred             hhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       181 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      + +...+.++++++  .....++++|+|.|+|.+|++++++|+.+|++.|+++++++++.++++++|++.++++.+
T Consensus       143 ~-~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~  215 (340)
T TIGR00692       143 T-IQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK  215 (340)
T ss_pred             h-hcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc
Confidence            4 556888888865  345789999999888999999999999999955888988899999999999999998876

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=2.7e-28  Score=220.41  Aligned_cols=191  Identities=24%  Similarity=0.255  Sum_probs=165.8

Q ss_pred             eeEEeecC---CCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           17 KAAICRIP---GKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        17 ~a~~~~~~---~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      ||+++..+   +.+  ++++++|.|.|+++||+||++++++|+.|...+.+..+..  .+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~--~~~~~~g~e~~G~V~~vG~~v~   78 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEA--GQPKILGWDAAGVVVAVGDEVT   78 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCC--CCCcccceeeEEEEEEeCCCCC
Confidence            56777765   443  7788899999999999999999999999999888765443  5688999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||+|+....                           ...+                   |+|++|++++.+.++++
T Consensus        79 ~~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~i  112 (336)
T TIGR02817        79 LFKPGDEVWYAGD---------------------------IDRP-------------------GSNAEFHLVDERIVGHK  112 (336)
T ss_pred             CCCCCCEEEEcCC---------------------------CCCC-------------------CcccceEEEcHHHcccC
Confidence            9999999975310                           0112                   38999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCC-----CCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHH
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEV-----GSTVAIFGL-GAVGLAVAEGARLN-RASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~G~-g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~  244 (267)
                      |+++++++++.+++.+.+||+++....++.+     +++|||+|+ |.+|++++|+|+.+ |+ +|+++.+++++.+.++
T Consensus       113 p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~  191 (336)
T TIGR02817       113 PKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVL  191 (336)
T ss_pred             CCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHH
Confidence            9999999999999999999998777788877     999999986 99999999999998 99 8999998999999999


Q ss_pred             HcCCCEEECCCC
Q 024496          245 KFGITDFINPAT  256 (267)
Q Consensus       245 ~~G~~~vi~~~~  256 (267)
                      ++|+++++++++
T Consensus       192 ~~g~~~~~~~~~  203 (336)
T TIGR02817       192 ELGAHHVIDHSK  203 (336)
T ss_pred             HcCCCEEEECCC
Confidence            999999998643

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=7.8e-28  Score=218.52  Aligned_cols=208  Identities=25%  Similarity=0.273  Sum_probs=170.5

Q ss_pred             ceeEEeecCCCC--eEEEE-eecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC------------------CCCCCCcc
Q 024496           16 CKAAICRIPGKP--LVIEE-IEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------------------PKLPLPVI   74 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~------------------~~~~~p~~   74 (267)
                      ||++++..++.+  +.+.+ .+.|.+.+++|+|||.++++|++|++.+.|.++.                  ...++|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888876653  44443 4667788999999999999999999988775431                  01256889


Q ss_pred             cceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccc
Q 024496           75 FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNI  154 (267)
Q Consensus        75 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  154 (267)
                      +|||++|+|+++|+++++|++||+|+..+...|+.|..|.     .|..      .|...+                   
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~-----~~~~------~~~~~~-------------------  130 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA-----DIDY------IGSERD-------------------  130 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccc-----cccc------cCCCCC-------------------
Confidence            9999999999999999999999999998888888876642     1211      121122                   


Q ss_pred             cceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496          155 SSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV  233 (267)
Q Consensus       155 g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~  233 (267)
                      |+|++|+.++...++++|+++++.+++.+.+.+.++|+++ ....+.++++|||+|+ |.+|++++++|+.+|+ +++++
T Consensus       131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence            3899999999999999999999999999999999999965 7788999999999998 9999999999999999 68888


Q ss_pred             cCChhhHHHHHHcCCCEEECCCC
Q 024496          234 DINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       234 ~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++. +++.++++|++.+++.++
T Consensus       209 ~~~~-~~~~~~~~g~~~~~~~~~  230 (350)
T cd08274         209 AGAA-KEEAVRALGADTVILRDA  230 (350)
T ss_pred             eCch-hhHHHHhcCCeEEEeCCC
Confidence            7655 888889999987666544

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.96  E-value=8.4e-28  Score=217.75  Aligned_cols=191  Identities=27%  Similarity=0.326  Sum_probs=167.3

Q ss_pred             ceeEEeecCCCC---eEEEEeecCCCCC-CeEEEEEeeeeCChhhHHhHhcCCCCCCCC----CCcccceeeEEEEEEec
Q 024496           16 CKAAICRIPGKP---LVIEEIEVEPPKA-WEIRIKILCTSLCHSDVTFWKSSTDLPKLP----LPVIFGHEAVGVVESVG   87 (267)
Q Consensus        16 ~~a~~~~~~~~~---~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~----~p~~~G~e~~G~V~~vG   87 (267)
                      |||+++.+++.+   +.++++|.|.|.+ +||+||+.++++|+.|+..+.|..+... .    .|.++|||++|+|+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~-~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKP-PTTPEPPAVGGNEGVGEVVKVG   79 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCC-cccCCCCCCCCcceEEEEEEeC
Confidence            789999988876   7899999998887 9999999999999999999888764321 2    57799999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +++..|++||+|+....                             ..                   |+|++|+.++.+.
T Consensus        80 ~~v~~~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~~~v~~~~  111 (341)
T cd08290          80 SGVKSLKPGDWVIPLRP-----------------------------GL-------------------GTWRTHAVVPADD  111 (341)
T ss_pred             CCCCCCCCCCEEEecCC-----------------------------CC-------------------ccchheEeccHHH
Confidence            99999999999976321                             01                   4899999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hhHHH
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP----EKFEI  242 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~----~~~~~  242 (267)
                      ++++|+++++++++.+++.+.++|+++.....+.++++|||+|+ |.+|++++++|+.+|+ +++++.++.    ++.+.
T Consensus       112 ~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~  190 (341)
T cd08290         112 LIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKER  190 (341)
T ss_pred             eEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHH
Confidence            99999999999999999999999998777778999999999987 9999999999999999 777776655    67888


Q ss_pred             HHHcCCCEEECCCC
Q 024496          243 GKKFGITDFINPAT  256 (267)
Q Consensus       243 ~~~~G~~~vi~~~~  256 (267)
                      ++++|+++++++++
T Consensus       191 ~~~~g~~~~~~~~~  204 (341)
T cd08290         191 LKALGADHVLTEEE  204 (341)
T ss_pred             HHhcCCCEEEeCcc
Confidence            88899999998876

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.96  E-value=1.3e-27  Score=215.08  Aligned_cols=187  Identities=23%  Similarity=0.246  Sum_probs=157.2

Q ss_pred             cceeEEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496           15 RCKAAICRIP--GKP----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        15 ~~~a~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +||++++.++  +.+    +++++++.|.|+++||||||.+++||+.|.....   ...  ..|.++|+|++|+|++   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~---~~~--~~p~v~G~e~~G~V~~---   73 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSK---RLN--EGDTMIGTQVAKVIES---   73 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhcccc---cCC--CCCcEecceEEEEEec---
Confidence            6899999883  333    7889999999999999999999999988754221   111  4688999999999995   


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--  166 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--  166 (267)
                      .++.|++||+|+..                                                    ++|++|++++.+  
T Consensus        74 ~~~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~  101 (329)
T cd08294          74 KNSKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQ  101 (329)
T ss_pred             CCCCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccc
Confidence            44679999999642                                                    168999999999  


Q ss_pred             -ceEEcCCCCC--h---hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          167 -HVVKITPHIP--L---GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       167 -~~~~iP~~~~--~---~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                       .++++|++++  +   ..++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++
T Consensus       102 ~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~  180 (329)
T cd08294         102 PDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDK  180 (329)
T ss_pred             cceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHH
Confidence             9999999987  2   2234577899999998878889999999999986 9999999999999999 89999999999


Q ss_pred             HHHHHHcCCCEEECCCCCCcccccc
Q 024496          240 FEIGKKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       240 ~~~~~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      .+.++++|+++++++++  +++.++
T Consensus       181 ~~~l~~~Ga~~vi~~~~--~~~~~~  203 (329)
T cd08294         181 VAWLKELGFDAVFNYKT--VSLEEA  203 (329)
T ss_pred             HHHHHHcCCCEEEeCCC--ccHHHH
Confidence            99999999999999987  665443

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.96  E-value=1e-27  Score=217.69  Aligned_cols=189  Identities=25%  Similarity=0.270  Sum_probs=158.9

Q ss_pred             ccceeEEeecCCC-CeEEEEeec----CCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceee--EEEEEEe
Q 024496           14 IRCKAAICRIPGK-PLVIEEIEV----EPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEA--VGVVESV   86 (267)
Q Consensus        14 ~~~~a~~~~~~~~-~~~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~--~G~V~~v   86 (267)
                      -.+|+++...+.. .|++++.+.    |+|+++||||||++++||+.|+..+.|...... ..|+++|++.  .|++..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~-~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295           6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLY-LPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcccc-CCCcCCCCeEeccEEEEEE
Confidence            3567777544443 288988877    789999999999999999999998887543211 4578889754  4566668


Q ss_pred             cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-
Q 024496           87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-  165 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~-  165 (267)
                      |+.++.|++||+|+..                                                    |+|+||+++|. 
T Consensus        85 ~~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~  112 (338)
T cd08295          85 DSGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRG  112 (338)
T ss_pred             ecCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecch
Confidence            8888899999999531                                                    27999999999 


Q ss_pred             cceEEcC-CCCChh-hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          166 THVVKIT-PHIPLG-IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       166 ~~~~~iP-~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ..++++| +++++. +++.+.+++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++
T Consensus       113 ~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~  191 (338)
T cd08295         113 QDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDL  191 (338)
T ss_pred             hceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            7999995 678886 788899999999998877889999999999997 9999999999999999 89999999999999


Q ss_pred             HHH-cCCCEEECCCC
Q 024496          243 GKK-FGITDFINPAT  256 (267)
Q Consensus       243 ~~~-~G~~~vi~~~~  256 (267)
                      +++ +|+++++++++
T Consensus       192 ~~~~lGa~~vi~~~~  206 (338)
T cd08295         192 LKNKLGFDDAFNYKE  206 (338)
T ss_pred             HHHhcCCceeEEcCC
Confidence            998 99999999764

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.96  E-value=3.3e-27  Score=212.68  Aligned_cols=191  Identities=23%  Similarity=0.182  Sum_probs=169.8

Q ss_pred             cceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           15 RCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        15 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      +||++++.+++.+  +++++++.|.++++||+||+.++++|++|+....+.++..  .+|.++|||++|+|+.+|+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~--~~~~~~g~e~~G~v~~vG~~v~~   78 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPP--SLPSGLGTEAAGVVSKVGSGVKH   78 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCC--CCCCccCcceEEEEEEeCCCCCC
Confidence            5899999887775  8889999999999999999999999999999888876543  46788999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      +++||+|+....                             ..                   |+|++|+.++.+.++++|
T Consensus        79 ~~~Gd~V~~~~~-----------------------------~~-------------------g~~~~~v~v~~~~~~~lp  110 (327)
T PRK10754         79 IKVGDRVVYAQS-----------------------------AL-------------------GAYSSVHNVPADKAAILP  110 (327)
T ss_pred             CCCCCEEEECCC-----------------------------CC-------------------cceeeEEEcCHHHceeCC
Confidence            999999964210                             01                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++++++.+.+.+.++|.++.....+.+|++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++++
T Consensus       111 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~  189 (327)
T PRK10754        111 DAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQV  189 (327)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEE
Confidence            999999999888899999997777788999999999975 9999999999999999 88999999999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      ++.++
T Consensus       190 ~~~~~  194 (327)
T PRK10754        190 INYRE  194 (327)
T ss_pred             EcCCC
Confidence            98876

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.96  E-value=2.3e-27  Score=206.48  Aligned_cols=187  Identities=32%  Similarity=0.497  Sum_probs=164.4

Q ss_pred             eEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCC
Q 024496           42 EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC  121 (267)
Q Consensus        42 eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c  121 (267)
                      ||+|++.++++|+.|+..+.+..+.. ..+|.++|||++|+|+++|+.++.|++||+|+..+...|+.|++|+.    .|
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~   75 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPP-PKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LC   75 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcC-CCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hC
Confidence            68999999999999999998876511 15688999999999999999999999999999999999999999997    66


Q ss_pred             CCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC
Q 024496          122 SKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE  201 (267)
Q Consensus       122 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~  201 (267)
                      +....   .+....                   |+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+.
T Consensus        76 ~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~  133 (271)
T cd05188          76 PGGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLK  133 (271)
T ss_pred             CCCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCC
Confidence            55543   222233                   48999999999999999999999999999899999999876666679


Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      ++++|||+|+|.+|++++++++.+|. +|+++++++++.+.++++|+++++++.+
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  187 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE  187 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc
Confidence            99999999986699999999999997 9999999999999999999999998776

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.95  E-value=1.7e-26  Score=207.67  Aligned_cols=211  Identities=26%  Similarity=0.295  Sum_probs=177.4

Q ss_pred             ceeEEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPG--KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||++++..+  +++++++.+.|.++++||+|++.++++|++|+....|.++... ..|.++|||++|+|+++|+.+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~   79 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPV-KDPLIPLSDGAGEVVAVGEGVTRF   79 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCC-CCCcccccceeEEEEEeCCCCcCC
Confidence            7899998664  3378888888888999999999999999999999887765332 467899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+......|+.+      ..++|....   +.|...+                   |+|++|+.++.+.++++|+
T Consensus        80 ~~Gd~V~~~~~~~~~~~------~~~~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~  131 (336)
T cd08276          80 KVGDRVVPTFFPNWLDG------PPTAEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPD  131 (336)
T ss_pred             CCCCEEEEecccccccc------ccccccccc---ccccccC-------------------ceeeeEEEecHHHeEECCC
Confidence            99999998776555443      334443211   1232223                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++.+++.+.+.+.+||+++.....+++|++|+|+|+|++|++++++++++|+ +|+++++++++.+.+.++|++++++
T Consensus       132 ~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~  210 (336)
T cd08276         132 HLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVIN  210 (336)
T ss_pred             CCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEc
Confidence            999999999999999999987777889999999999889999999999999999 7999999999999999999999998


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      .+.
T Consensus       211 ~~~  213 (336)
T cd08276         211 YRT  213 (336)
T ss_pred             CCc
Confidence            754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.95  E-value=1.1e-26  Score=208.47  Aligned_cols=194  Identities=20%  Similarity=0.212  Sum_probs=165.3

Q ss_pred             ceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++..+++  +++++++|.|.++++||+||+.++++|++|+..+.|..+... ..|.++|||++|+|+++  +++.|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~--~~~~~   77 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTR-NYPHTPGIDAAGTVVSS--DDPRF   77 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCC-CCCCccCcccEEEEEEe--CCCCC
Confidence            78999998886  599999999999999999999999999999999888764321 46789999999999999  45689


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                        ..|+..+                   |+|++|++++.++++++|+
T Consensus        78 ~~Gd~V~~~~~------------------------~~g~~~~-------------------g~~~~~~~v~~~~~~~lp~  114 (325)
T cd05280          78 REGDEVLVTGY------------------------DLGMNTD-------------------GGFAEYVRVPADWVVPLPE  114 (325)
T ss_pred             CCCCEEEEccc------------------------ccCCCCC-------------------ceeEEEEEEchhhEEECCC
Confidence            99999986421                        0222223                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHh--CCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVA--GVE-VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~--~~~-~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++++++.+.+.+.++|+++....  ++. .+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++++.++++|++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  193 (325)
T cd05280         115 GLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGAS  193 (325)
T ss_pred             CCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc
Confidence            9999999999999999999765443  335 3579999998 9999999999999999 799999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++++++
T Consensus       194 ~~~~~~~  200 (325)
T cd05280         194 EVLDRED  200 (325)
T ss_pred             EEEcchh
Confidence            9998765

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.95  E-value=9.9e-27  Score=212.62  Aligned_cols=190  Identities=24%  Similarity=0.276  Sum_probs=155.0

Q ss_pred             ccccceeEEeec-CCC-C----eEEEEe---ecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccce--ee
Q 024496           12 KVIRCKAAICRI-PGK-P----LVIEEI---EVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGH--EA   79 (267)
Q Consensus        12 ~~~~~~a~~~~~-~~~-~----~~~~~~---~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~--e~   79 (267)
                      ...+.|.+++.+ +.+ |    |++++.   +.|. ++++|||||+.+++||+.|...+.+.....  ..|+++|+  |+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~--~~p~~~G~~~~~   82 (348)
T PLN03154          5 QVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSY--LPPFVPGQRIEG   82 (348)
T ss_pred             ccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCC--CCCcCCCCeeEe
Confidence            344567777743 211 1    888773   5564 479999999999999999876543322221  35789998  88


Q ss_pred             EEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 024496           80 VGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTE  159 (267)
Q Consensus        80 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~  159 (267)
                      +|+|..+|+++++|++||+|...                                                    |+|+|
T Consensus        83 ~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~ae  110 (348)
T PLN03154         83 FGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEE  110 (348)
T ss_pred             eEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEE
Confidence            99999999999999999999531                                                    27999


Q ss_pred             eEEeeccc--eEE--cCCCCChh-hhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496          160 YSVVDITH--VVK--ITPHIPLG-IACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV  233 (267)
Q Consensus       160 y~~v~~~~--~~~--iP~~~~~~-~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~  233 (267)
                      |+.++.+.  +++  +|++++++ +++.+++++.|||+++.+..++++|++|||+|+ |++|++++|+|+++|+ +|+++
T Consensus       111 y~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~  189 (348)
T PLN03154        111 YSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGS  189 (348)
T ss_pred             EEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence            99998753  544  58999986 688889999999998877889999999999998 9999999999999999 89999


Q ss_pred             cCChhhHHHHH-HcCCCEEECCCC
Q 024496          234 DINPEKFEIGK-KFGITDFINPAT  256 (267)
Q Consensus       234 ~~~~~~~~~~~-~~G~~~vi~~~~  256 (267)
                      ++++++.+.++ ++|+++++|+++
T Consensus       190 ~~~~~k~~~~~~~lGa~~vi~~~~  213 (348)
T PLN03154        190 AGSSQKVDLLKNKLGFDEAFNYKE  213 (348)
T ss_pred             cCCHHHHHHHHHhcCCCEEEECCC
Confidence            99999999987 799999999875

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.95  E-value=9.4e-27  Score=210.11  Aligned_cols=168  Identities=25%  Similarity=0.297  Sum_probs=147.9

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496           28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC  107 (267)
Q Consensus        28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~  107 (267)
                      +++.++|.|.|++|||||||.+++||+.+..   |.+...  ..|.++|.|++|+|+++|+   .|++||+|+..     
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~--~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-----   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK--EGDTMMGQQVARVVESKNV---ALPKGTIVLAS-----   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC--CCCcEecceEEEEEEeCCC---CCCCCCEEEEe-----
Confidence            8889999999999999999999999997543   433322  3578999999999999874   59999999642     


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc----CCCCChhhh-hh
Q 024496          108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI----TPHIPLGIA-CL  182 (267)
Q Consensus       108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i----P~~~~~~~a-a~  182 (267)
                                                                     ++|++|+.++.+.+.++    |++++++++ +.
T Consensus        86 -----------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~  118 (325)
T TIGR02825        86 -----------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGT  118 (325)
T ss_pred             -----------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHh
Confidence                                                           16899999999888877    899999987 67


Q ss_pred             cchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          183 LSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       183 l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+.++++|+++++++++
T Consensus       119 l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~  192 (325)
T TIGR02825       119 VGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT  192 (325)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc
Confidence            88899999998888899999999999986 9999999999999999 8999999999999999999999999876

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.95  E-value=1.1e-26  Score=209.01  Aligned_cols=191  Identities=26%  Similarity=0.260  Sum_probs=167.4

Q ss_pred             cceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           15 RCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        15 ~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      +|||+++..++..  +++.+.+.|.+.++||+||+.++++|+.|.....+..+... ..|.++|||++|+|+++|++++.
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~vG~~v~~   79 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPP-GSSEILGLEVAGYVEDVGSDVKR   79 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccceeeEEEEEEeCCCCCC
Confidence            6999999988763  66677778888999999999999999999998887654321 45678999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      +++||+|+....                              +                   |+|++|++++.++++++|
T Consensus        80 ~~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~v~~~~~~~ip  110 (334)
T PTZ00354         80 FKEGDRVMALLP------------------------------G-------------------GGYAEYAVAHKGHVMHIP  110 (334)
T ss_pred             CCCCCEEEEecC------------------------------C-------------------CceeeEEEecHHHcEeCC
Confidence            999999965311                              1                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++.+++.+.+++.+||+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|++++
T Consensus       111 ~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  189 (334)
T PTZ00354        111 QGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIIL  189 (334)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEE
Confidence            999999999999999999998777788999999999986 9999999999999999 66778888999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      +++..
T Consensus       190 ~~~~~  194 (334)
T PTZ00354        190 IRYPD  194 (334)
T ss_pred             EecCC
Confidence            98765

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.95  E-value=2.2e-26  Score=207.28  Aligned_cols=188  Identities=27%  Similarity=0.265  Sum_probs=165.3

Q ss_pred             cceeEEeecCCC----CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           15 RCKAAICRIPGK----PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        15 ~~~a~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      .|||+++.+++.    ++++++++.|.+.++||+||+.++++|+.|+....|.+... ..+|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~v   79 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEGV   79 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCCC
Confidence            489999987655    48899999999999999999999999999999888866432 1578899999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||+|+....                                                  |+|++|+.++.+++++
T Consensus        80 ~~~~~Gd~V~~~~~--------------------------------------------------g~~~s~~~v~~~~~~~  109 (329)
T cd08250          80 TDFKVGDAVATMSF--------------------------------------------------GAFAEYQVVPARHAVP  109 (329)
T ss_pred             CCCCCCCEEEEecC--------------------------------------------------cceeEEEEechHHeEE
Confidence            99999999976321                                                  4899999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|++  ..+++.+.+++.+||+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       110 ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  186 (329)
T cd08250         110 VPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCD  186 (329)
T ss_pred             CCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCc
Confidence            9997  34667788899999998777788999999999986 9999999999999999 799998899999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      ++++.++
T Consensus       187 ~v~~~~~  193 (329)
T cd08250         187 RPINYKT  193 (329)
T ss_pred             eEEeCCC
Confidence            9998766

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.95  E-value=7.5e-27  Score=212.17  Aligned_cols=199  Identities=29%  Similarity=0.404  Sum_probs=167.4

Q ss_pred             ceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||++++.++ .++++++++.|.|+++||+||+.++++|++|+....+.. ..  ..|.++|||++|+|+.+|++++.|+
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~--~~~~~~g~e~~G~v~~vG~~v~~~~   77 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IP--SYPAILGCDFAGTVVEVGSGVTRFK   77 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-cc--CCCceeeeeeeEEEEEeCCCcCcCC
Confidence            7899999884 338889999999999999999999999999988775543 11  3577899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+......|+                      +...+                   |+|++|++++.+.++++|++
T Consensus        78 ~Gd~V~~~~~~~~~----------------------~~~~~-------------------g~~~~~~~v~~~~~~~ip~~  116 (339)
T cd08249          78 VGDRVAGFVHGGNP----------------------NDPRN-------------------GAFQEYVVADADLTAKIPDN  116 (339)
T ss_pred             CCCEEEEEeccccC----------------------CCCCC-------------------CcccceEEechhheEECCCC
Confidence            99999876542221                      01112                   48999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCC----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGV----------EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~----------~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++++.+++.+.++|+++.+...+          .++++|+|+|+ |.+|++++++|+.+|+ +|+++. ++++.+.+
T Consensus       117 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~  194 (339)
T cd08249         117 ISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLV  194 (339)
T ss_pred             CCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHH
Confidence            99999999999999999987655544          78999999997 8999999999999999 788877 56888999


Q ss_pred             HHcCCCEEECCCCCCcccc
Q 024496          244 KKFGITDFINPATCGDKTV  262 (267)
Q Consensus       244 ~~~G~~~vi~~~~~~~~~~  262 (267)
                      +++|+++++++++  +++.
T Consensus       195 ~~~g~~~v~~~~~--~~~~  211 (339)
T cd08249         195 KSLGADAVFDYHD--PDVV  211 (339)
T ss_pred             HhcCCCEEEECCC--chHH
Confidence            9999999999876  5443

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.95  E-value=3.7e-26  Score=204.89  Aligned_cols=192  Identities=21%  Similarity=0.276  Sum_probs=165.3

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |||+++++++.+  +++.+.+.|.+.++||+|++.++++|+.|+....|..+.. ....|.++|||++|+|+++|+.++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876654  6666777777889999999999999999999888765321 1256788999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      +++||+|+....                            ..+                   |+|++|+.++.++++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~~-------------------g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RAG-------------------GGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CCC-------------------ceeeEEEEEchHHeEeCC
Confidence            999999976421                            012                   489999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++.+++.+.+.+.++|. +.....++++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++++
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  191 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA  191 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence            99999999999989999964 677888999999999986 9999999999999999 89999999999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      +++++
T Consensus       192 ~~~~~  196 (324)
T cd08244         192 VDYTR  196 (324)
T ss_pred             EecCC
Confidence            98876

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.95  E-value=1.9e-26  Score=209.39  Aligned_cols=193  Identities=23%  Similarity=0.239  Sum_probs=163.9

Q ss_pred             ceeEEeecCCCC---eEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCC--------C-----CCCCCCccccee
Q 024496           16 CKAAICRIPGKP---LVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTD--------L-----PKLPLPVIFGHE   78 (267)
Q Consensus        16 ~~a~~~~~~~~~---~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~-----~~~~~p~~~G~e   78 (267)
                      |||+++..++++   +++++++.|.| +++||+||++++++|++|+....|...        .     ....+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            789998888876   88899999999 499999999999999999998877421        0     011568899999


Q ss_pred             eEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 024496           79 AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFT  158 (267)
Q Consensus        79 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a  158 (267)
                      ++|+|+++|+.+++|++||+|+..+..                           ..+                   |+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~---------------------------~~~-------------------g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP---------------------------WSQ-------------------GTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC---------------------------CCC-------------------ccce
Confidence            999999999999999999999864320                           011                   4899


Q ss_pred             eeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC----CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE
Q 024496          159 EYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE----VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV  233 (267)
Q Consensus       159 ~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~----~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~  233 (267)
                      +|++++.++++++|+++++.+++.+.+.+.++|+++.+...+.    +|++|+|+|+ |.+|++++++|+.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            9999999999999999999999999999999999876666665    4999999986 9999999999999999 78887


Q ss_pred             cCChhhHHHHHHcCCCEEECCCC
Q 024496          234 DINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       234 ~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .++ ++.+.++++|++++++..+
T Consensus       194 ~~~-~~~~~~~~~g~~~~~~~~~  215 (350)
T cd08248         194 CST-DAIPLVKSLGADDVIDYNN  215 (350)
T ss_pred             eCc-chHHHHHHhCCceEEECCC
Confidence            754 6788888999999998766

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.95  E-value=4.9e-26  Score=203.15  Aligned_cols=191  Identities=25%  Similarity=0.324  Sum_probs=164.0

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++...+.+  +++.+.+.|.+.++||+||+.++++|+.|+....+..+..  ..|.++|||++|+|+++|.  ..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~vG~--~~~   76 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSV--KFPRVLGIEAVGEVEEAPG--GTF   76 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC--CCCccccceeEEEEEEecC--CCC
Confidence            688888876643  6667777777899999999999999999999888876443  5688999999999999995  579


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                        +.+...+                   |+|++|+.++..+++++|+
T Consensus        77 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~ip~  113 (320)
T cd08243          77 TPGQRVATAMG------------------------GMGRTFD-------------------GSYAEYTLVPNEQVYAIDS  113 (320)
T ss_pred             CCCCEEEEecC------------------------CCCCCCC-------------------cccceEEEcCHHHcEeCCC
Confidence            99999987532                        0111122                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++++.+.+++.+||+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|+++++
T Consensus       114 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  192 (320)
T cd08243         114 DLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVV  192 (320)
T ss_pred             CCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEE
Confidence            99999999999999999998877778999999999997 9999999999999999 799999899999999999999887


Q ss_pred             CC
Q 024496          253 NP  254 (267)
Q Consensus       253 ~~  254 (267)
                      +.
T Consensus       193 ~~  194 (320)
T cd08243         193 ID  194 (320)
T ss_pred             ec
Confidence            54

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.95  E-value=6.6e-26  Score=203.76  Aligned_cols=194  Identities=16%  Similarity=0.175  Sum_probs=160.9

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++..++++  +.++++|.|.|.++||+||+.++++|++|.....+..... ..+|.++|||++|+|++.|  +.+|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~V~~~~--~~~~   77 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIV-KRYPFIPGIDLAGTVVESN--DPRF   77 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCcccc-CCCCcCcccceeEEEEEcC--CCCC
Confidence            789999988774  7789999999999999999999999999987665322211 1458899999999999964  5679


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+..+.                        ..|...+                   |+|++|+.++.++++++|+
T Consensus        78 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~v~~~~~~~~p~  114 (326)
T cd08289          78 KPGDEVIVTSY------------------------DLGVSHH-------------------GGYSEYARVPAEWVVPLPK  114 (326)
T ss_pred             CCCCEEEEccc------------------------ccCCCCC-------------------CcceeEEEEcHHHeEECCC
Confidence            99999986431                        0122223                   4899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHH--hCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKV--AGV-EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~--~~~-~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++++++.+++.+.+|+.++...  ..+ ..+++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++|++
T Consensus       115 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~  193 (326)
T cd08289         115 GLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAK  193 (326)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCC
Confidence            999999999999999998876432  233 35789999998 9999999999999999 899999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++++++
T Consensus       194 ~v~~~~~  200 (326)
T cd08289         194 EVIPREE  200 (326)
T ss_pred             EEEcchh
Confidence            9998765

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.95  E-value=1.3e-25  Score=201.73  Aligned_cols=193  Identities=19%  Similarity=0.210  Sum_probs=161.9

Q ss_pred             eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||+++...+.|  ++++++|.|.+.++||+||+.++++|++|+..+.|.++... ..|.++|||++|+|+.  .++..|+
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~--~~~~~~~   77 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVR-SYPMIPGIDAAGTVVS--SEDPRFR   77 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCC-CCCccceeeeEEEEEe--cCCCCCC
Confidence            67888877775  68999999999999999999999999999999888764321 4688999999999998  5667899


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+....                        +.|...+                   |+|++|+.++.+.++++|++
T Consensus        78 ~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~  114 (323)
T TIGR02823        78 EGDEVIVTGY------------------------GLGVSHD-------------------GGYSQYARVPADWLVPLPEG  114 (323)
T ss_pred             CCCEEEEccC------------------------CCCCCCC-------------------ccceEEEEEchhheEECCCC
Confidence            9999986431                        0122222                   38999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHH--hCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKV--AGVEVGS-TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +++++++.+.+.+.+++.++...  ..+.+++ +|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++
T Consensus       115 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~  193 (323)
T TIGR02823       115 LSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASE  193 (323)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcE
Confidence            99999999998999998865332  3488898 9999997 9999999999999999 7887777888889999999999


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      +++.++
T Consensus       194 ~~~~~~  199 (323)
T TIGR02823       194 VIDRED  199 (323)
T ss_pred             EEcccc
Confidence            998765

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.94  E-value=1.1e-25  Score=203.15  Aligned_cols=192  Identities=26%  Similarity=0.283  Sum_probs=166.3

Q ss_pred             ceeEEeecCCCC-----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           16 CKAAICRIPGKP-----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        16 ~~a~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      ||++++.+++++     +..++++.|.+.+++|+|++.++++|++|++.+.+..+..  +.|.++|||++|+|+.+|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~~G~~v   78 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVP--GQPKILGWDASGVVEAVGSEV   78 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCC--CCCcccccceEEEEEEcCCCC
Confidence            689999988874     5556777788889999999999999999999887765532  567789999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +.|++||+|+....                           ...+                   |+|++|+.++.+++++
T Consensus        79 ~~~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~  112 (336)
T cd08252          79 TLFKVGDEVYYAGD---------------------------ITRP-------------------GSNAEYQLVDERIVGH  112 (336)
T ss_pred             CCCCCCCEEEEcCC---------------------------CCCC-------------------ccceEEEEEchHHeee
Confidence            99999999975311                           0112                   3899999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCC-----CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEV-----GSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKFEIG  243 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~-----g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++++++++.+++.+.++|.++.+...+.+     +++|+|+|+ |.+|++++++|+.+| + +|+++++++++.+.+
T Consensus       113 ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~  191 (336)
T cd08252         113 KPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWV  191 (336)
T ss_pred             CCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHH
Confidence            99999999999999999999998777788877     999999986 999999999999999 6 999999999999999


Q ss_pred             HHcCCCEEECCCC
Q 024496          244 KKFGITDFINPAT  256 (267)
Q Consensus       244 ~~~G~~~vi~~~~  256 (267)
                      +++|+++++++++
T Consensus       192 ~~~g~~~~~~~~~  204 (336)
T cd08252         192 KELGADHVINHHQ  204 (336)
T ss_pred             HhcCCcEEEeCCc
Confidence            9999999998764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.94  E-value=1.4e-25  Score=201.46  Aligned_cols=194  Identities=14%  Similarity=0.149  Sum_probs=162.5

Q ss_pred             ceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++.+++.  .++++++|.|.|+++||+||+.++++|++|.....+.+.... ..|.++|||++|+|++  ++++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~V~~--~~~~~~   77 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVR-TFPLVPGIDLAGTVVE--SSSPRF   77 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccC-CCCCccccceEEEEEe--CCCCCC
Confidence            78999998775  388999999999999999999999999999998877653221 4578899999999999  777889


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                        ..+...+                   |+|++|++++.+.++++|+
T Consensus        78 ~~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~v~~~~~~~lp~  114 (324)
T cd08288          78 KPGDRVVLTGW------------------------GVGERHW-------------------GGYAQRARVKADWLVPLPE  114 (324)
T ss_pred             CCCCEEEECCc------------------------cCCCCCC-------------------CcceeEEEEchHHeeeCCC
Confidence            99999976321                        0111112                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHH--HHhCCC-CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAW--KVAGVE-VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~--~~~~~~-~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++++++.+++.+.+++.++.  +..+.. ++++|+|+|+ |.+|++++++|+++|+ +|++++.++++.+.++++|++
T Consensus       115 ~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~  193 (324)
T cd08288         115 GLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGAS  193 (324)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCC
Confidence            9999999999988888887543  234455 6789999997 9999999999999999 789888899999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++++++
T Consensus       194 ~~~~~~~  200 (324)
T cd08288         194 EIIDRAE  200 (324)
T ss_pred             EEEEcch
Confidence            9998875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.94  E-value=1.9e-25  Score=198.86  Aligned_cols=195  Identities=26%  Similarity=0.323  Sum_probs=169.0

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++..++.+  +++.+++.|.+.+++|+|++.++++|++|+....|..... ...|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~   79 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGL-PPLPYVPGSDGAGVVEAVGEGVDGL   79 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCC-CCCCeecccceEEEEEeeCCCCCCC
Confidence            678888776544  7788999898999999999999999999999887765432 1578899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+.....                        .+ ..+                   |++++|+.++.+.++++|+
T Consensus        80 ~~Gd~v~~~~~~------------------------~~-~~~-------------------g~~~~~~~~~~~~~~~ip~  115 (325)
T cd08253          80 KVGDRVWLTNLG------------------------WG-RRQ-------------------GTAAEYVVVPADQLVPLPD  115 (325)
T ss_pred             CCCCEEEEeccc------------------------cC-CCC-------------------cceeeEEEecHHHcEeCCC
Confidence            999999875420                        00 012                   4899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+.+++.++|+++....++.++++|+|+|+ +.+|++++++++.+|+ +|+++++++++.+.+.++|+++++
T Consensus       116 ~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  194 (325)
T cd08253         116 GVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVF  194 (325)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence            99999999999999999998777789999999999986 9999999999999998 899999999999999999999998


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +...
T Consensus       195 ~~~~  198 (325)
T cd08253         195 NYRA  198 (325)
T ss_pred             eCCC
Confidence            8766

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=3.8e-25  Score=196.87  Aligned_cols=181  Identities=20%  Similarity=0.246  Sum_probs=156.2

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++.+.+ |  +++++.+.|.++++||+||+.++++|+.|.+...+.      ..|.++|||++|+|+++|+++..|
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~~~   73 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGSGP   73 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCCCC
Confidence            6888887754 3  677788889899999999999999999999876521      235789999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+...                              .+                   |+|++|+.++.++++++|+
T Consensus        74 ~~Gd~V~~~~------------------------------~~-------------------g~~~~~~~v~~~~~~~ip~  104 (305)
T cd08270          74 AVGARVVGLG------------------------------AM-------------------GAWAELVAVPTGWLAVLPD  104 (305)
T ss_pred             CCCCEEEEec------------------------------CC-------------------cceeeEEEEchHHeEECCC
Confidence            9999997531                              11                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++++.+++.+.+||+++...... ++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++.++
T Consensus       105 ~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  182 (305)
T cd08270         105 GVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVV  182 (305)
T ss_pred             CCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence            999999999999999999976554444 6999999988 9999999999999999 899999999999999999987766


Q ss_pred             CC
Q 024496          253 NP  254 (267)
Q Consensus       253 ~~  254 (267)
                      +.
T Consensus       183 ~~  184 (305)
T cd08270         183 VG  184 (305)
T ss_pred             ec
Confidence            43

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.94  E-value=5.9e-25  Score=200.37  Aligned_cols=195  Identities=24%  Similarity=0.266  Sum_probs=160.5

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC---CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc-
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP---KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE-   91 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-   91 (267)
                      +|++++.++++++++++++.|.|   +++||+||+.++++|++|+..+.+..... ...|.++|||++|+|+++|++++ 
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (352)
T cd08247           1 YKALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHF-KVKEKGLGRDYSGVIVKVGSNVAS   79 (352)
T ss_pred             CceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhccccccc-ccCCCccCceeEEEEEEeCccccc
Confidence            47899999998888888887776   89999999999999999998775432221 02377899999999999999998 


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc----c
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT----H  167 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~----~  167 (267)
                      .|++||+|+......|                         ..+                   |+|++|++++..    .
T Consensus        80 ~~~~Gd~V~~~~~~~~-------------------------~~~-------------------g~~~~~~~v~~~~~~~~  115 (352)
T cd08247          80 EWKVGDEVCGIYPHPY-------------------------GGQ-------------------GTLSQYLLVDPKKDKKS  115 (352)
T ss_pred             CCCCCCEEEEeecCCC-------------------------CCC-------------------ceeeEEEEEccccccce
Confidence            8999999987532110                         012                   489999999987    7


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHh-CCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVA-GVEVGSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~-~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  244 (267)
                      ++++|+++++.+++.+++.+.++|+++.+.. .+++|++|+|+|+ +.+|++++++|+.++. ..++++.+ .++.+.++
T Consensus       116 ~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~~-~~~~~~~~  194 (352)
T cd08247         116 ITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCS-SRSAELNK  194 (352)
T ss_pred             eEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEeC-hhHHHHHH
Confidence            8999999999999999999999999776656 7999999999988 7999999999998854 36777764 55566778


Q ss_pred             HcCCCEEECCCC
Q 024496          245 KFGITDFINPAT  256 (267)
Q Consensus       245 ~~G~~~vi~~~~  256 (267)
                      ++|+++++++++
T Consensus       195 ~~g~~~~i~~~~  206 (352)
T cd08247         195 KLGADHFIDYDA  206 (352)
T ss_pred             HhCCCEEEecCC
Confidence            999999999876

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.94  E-value=3e-25  Score=198.85  Aligned_cols=178  Identities=25%  Similarity=0.290  Sum_probs=158.1

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496           28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC  107 (267)
Q Consensus        28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~  107 (267)
                      +++++.+.|.+.+++|+||++++++|+.|...+.+...... .+|.++|||++|+|+++|++++.+++||+|+..+.   
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~---   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRP-PLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG---   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCC-CCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC---
Confidence            55677788888999999999999999999998877654322 56789999999999999999999999999986431   


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhh
Q 024496          108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV  187 (267)
Q Consensus       108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~  187 (267)
                                                 +                   |+|++|+.++...++++|+++++.+++.+.+.+
T Consensus        90 ---------------------------~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~  123 (323)
T cd05282          90 ---------------------------E-------------------GTWQEYVVAPADDLIPVPDSISDEQAAMLYINP  123 (323)
T ss_pred             ---------------------------C-------------------CcceeEEecCHHHeEECCCCCCHHHHHHHhccH
Confidence                                       1                   389999999999999999999999999988899


Q ss_pred             hhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          188 STGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       188 ~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .++|+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++++++++
T Consensus       124 ~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  192 (323)
T cd05282         124 LTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP  192 (323)
T ss_pred             HHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc
Confidence            999998777778899999999987 8999999999999999 8888888899999999999999999876

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.94  E-value=4.6e-25  Score=195.92  Aligned_cols=190  Identities=27%  Similarity=0.332  Sum_probs=166.5

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++..++.+  +++.+++.|.+.+++|+||+.++++|+.|+....+.++... .+|.++|||++|+|+++|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~vg~~~~~~   79 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPP-GASDILGLEVAGVVVAVGPGVTGW   79 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCC-CCCCcccceeEEEEEeeCCCCCCC
Confidence            789999886554  67778877778899999999999999999998877654321 567899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                              +                   |+|++|+.++.++++++|+
T Consensus        80 ~~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~  110 (323)
T cd05276          80 KVGDRVCALLA------------------------------G-------------------GGYAEYVVVPAGQLLPVPE  110 (323)
T ss_pred             CCCCEEEEecC------------------------------C-------------------CceeEEEEcCHHHhccCCC
Confidence            99999975321                              1                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+...+.++|+++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++.++
T Consensus       111 ~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (323)
T cd05276         111 GLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAI  189 (323)
T ss_pred             CCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEE
Confidence            99999999999999999998777788999999999997 8999999999999999 799999999999999889998888


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +...
T Consensus       190 ~~~~  193 (323)
T cd05276         190 NYRT  193 (323)
T ss_pred             eCCc
Confidence            8765

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.94  E-value=5.2e-25  Score=196.45  Aligned_cols=180  Identities=22%  Similarity=0.344  Sum_probs=151.9

Q ss_pred             cCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhH-hcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEe
Q 024496           23 IPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW-KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLP  101 (267)
Q Consensus        23 ~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~  101 (267)
                      +++. +++++++.|.+.++||+||+.++++|+.|+..+ .+.........|.++|+|++|+|+++|+++++|++||+|+.
T Consensus         3 ~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~   81 (312)
T cd08269           3 GPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAG   81 (312)
T ss_pred             CCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEE
Confidence            4444 899999999999999999999999999999887 66543221135789999999999999999999999999976


Q ss_pred             eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhh
Q 024496          102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC  181 (267)
Q Consensus       102 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa  181 (267)
                      ...                                                  |+|++|+.++.+.++++|+++  ..++
T Consensus        82 ~~~--------------------------------------------------g~~~~~~~v~~~~~~~lP~~~--~~~~  109 (312)
T cd08269          82 LSG--------------------------------------------------GAFAEYDLADADHAVPLPSLL--DGQA  109 (312)
T ss_pred             ecC--------------------------------------------------CcceeeEEEchhheEECCCch--hhhH
Confidence            421                                                  389999999999999999988  2333


Q ss_pred             hcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          182 LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .+..+++++++++. ..+++++++|+|+|+|.+|++++++|+.+|++.|+++.+++++.++++++|++++++.+.
T Consensus       110 ~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~  183 (312)
T cd08269         110 FPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS  183 (312)
T ss_pred             HhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC
Confidence            33367888888654 788999999999988999999999999999944999999999999999999999998765

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.93  E-value=2.1e-25  Score=203.03  Aligned_cols=186  Identities=26%  Similarity=0.356  Sum_probs=151.1

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCC--CCCCcccceeeEEEEEE---ec-CCCcccCCCCEEEe
Q 024496           28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK--LPLPVIFGHEAVGVVES---VG-EYVEEVKERDLVLP  101 (267)
Q Consensus        28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~--~~~p~~~G~e~~G~V~~---vG-~~v~~~~~Gd~V~~  101 (267)
                      ...++.+.|.|++++++|++.++++|+.|+....|......  ..+|.+++.++.|++..   .| ..+..+..||.+..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            34478999999999999999999999999999998877552  13665555555555333   34 23344555655532


Q ss_pred             eccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhh
Q 024496          102 IFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIAC  181 (267)
Q Consensus       102 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa  181 (267)
                      .                              ..                   .|+|+||+++|...++++|+++++.+|+
T Consensus       100 ~------------------------------~~-------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 F------------------------------LS-------------------SGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             c------------------------------cC-------------------CCceeeEEEcchhhccCCCCccChhhhh
Confidence            2                              12                   2499999999999999999999999999


Q ss_pred             hcchhhhhHHHHHHHHh------CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          182 LLSCGVSTGVGAAWKVA------GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~------~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .+++++.|||.+++...      ++++|++|||+|+ |++|++++|+|+..++ ..+++..+++++++++++|+|+++||
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence            99999999999999999      9999999999976 8999999999999996 55555568999999999999999999


Q ss_pred             CCCCccccccc
Q 024496          255 ATCGDKTVSQV  265 (267)
Q Consensus       255 ~~~~~~~~~~v  265 (267)
                      ++  +++++++
T Consensus       210 ~~--~~~~e~~  218 (347)
T KOG1198|consen  210 KD--ENVVELI  218 (347)
T ss_pred             CC--HHHHHHH
Confidence            99  7776553

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.4e-24  Score=194.17  Aligned_cols=191  Identities=29%  Similarity=0.352  Sum_probs=166.1

Q ss_pred             ceeEEeecCC--CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPG--KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++.+++  +.++++++|.|.+.+++|+||+.++++|++|+....+.....  ..|.++|||++|+|+.+|++++.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~--~~~~~~g~e~~G~v~~~G~~~~~~   78 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAW--SYPHVPGVDGAGVVVAVGAKVTGW   78 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC--CCCcccccceEEEEEEeCCCCCcC
Confidence            7999999998  359999999999999999999999999999998887765432  346789999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                           ...+                   |+|++|+.++.+.++++|+
T Consensus        79 ~~Gd~V~~~~~---------------------------~~~~-------------------~~~~s~~~~~~~~~~~ip~  112 (325)
T cd08271          79 KVGDRVAYHAS---------------------------LARG-------------------GSFAEYTVVDARAVLPLPD  112 (325)
T ss_pred             CCCCEEEeccC---------------------------CCCC-------------------ccceeEEEeCHHHeEECCC
Confidence            99999976431                           0112                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+.+.+.++|+++.+...+.+|++|+|+|+ |.+|++++++++.+|+ +|+++. .+++.+.+.++|++.++
T Consensus       113 ~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~  190 (325)
T cd08271         113 SLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVI  190 (325)
T ss_pred             CCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEe
Confidence            99999999999999999998777788999999999998 8999999999999999 777766 66778888889999898


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +...
T Consensus       191 ~~~~  194 (325)
T cd08271         191 DYND  194 (325)
T ss_pred             cCCC
Confidence            8765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=1.6e-24  Score=193.49  Aligned_cols=194  Identities=24%  Similarity=0.306  Sum_probs=166.1

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++..++.+  +++++.+.|.+.+++|+|++.++++|++|+....+...... ..|.++|||++|+|+++|+++..|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~   79 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARP-PLPAILGCDVAGVVEAVGEGVTRF   79 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccccceeEEEEEeCCCCCCC
Confidence            689999888765  77778888888999999999999999999998877654221 457889999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                        +.+ ...                   |+|++|+.++.+.++++|+
T Consensus        80 ~~Gd~V~~~~~------------------------~~~-~~~-------------------g~~~~~~~v~~~~~~~~p~  115 (326)
T cd08272          80 RVGDEVYGCAG------------------------GLG-GLQ-------------------GSLAEYAVVDARLLALKPA  115 (326)
T ss_pred             CCCCEEEEccC------------------------CcC-CCC-------------------CceeEEEEecHHHcccCCC
Confidence            99999976421                        000 011                   4899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+++.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|+++.+. ++.+.++++|++.++
T Consensus       116 ~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~  193 (326)
T cd08272         116 NLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPII  193 (326)
T ss_pred             CCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEE
Confidence            99999999999899999998778889999999999986 9999999999999999 88888877 888888889998888


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +...
T Consensus       194 ~~~~  197 (326)
T cd08272         194 YYRE  197 (326)
T ss_pred             ecch
Confidence            7654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=3.3e-24  Score=192.91  Aligned_cols=187  Identities=25%  Similarity=0.313  Sum_probs=162.8

Q ss_pred             eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||+++...+.+  +++++.+.|.|.++||+|++.++++|++|+..+.+...... .+|.++|||++|+|+.+|++++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           2 REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP-PLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             eeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCC-CCCcccccceEEEEEEeCCCCccCC
Confidence            68888877654  78888899999999999999999999999998887764321 5688999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|.....                              +                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~------------------------------~-------------------g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR------------------------------V-------------------GGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC------------------------------C-------------------cceeeEEEechHHeEECCCC
Confidence            9999976421                              1                   38999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++.+++.+.+++.++|+++.+...+.++++|+|+|+ |.+|++++++|+.+|+ +|++++. +++.+.++++|++. ++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~  188 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-ID  188 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-Ec
Confidence            9999999999999999998777788999999999997 9999999999999999 8888887 88888889999764 45


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      .+.
T Consensus       189 ~~~  191 (331)
T cd08273         189 YRT  191 (331)
T ss_pred             CCC
Confidence            443

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=5.4e-24  Score=189.95  Aligned_cols=195  Identities=30%  Similarity=0.363  Sum_probs=166.6

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++++...+.+  +++.+.+.|.+.+++|+|++.++++|+.|+.+..+...... ..|.++|||++|+|+.+|+++.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~-~~~~~~g~e~~G~v~~~G~~~~~~   79 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPP-PLPARLGYEAAGVVEAVGAGVTGF   79 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCC-CCCCCCCcceEEEEEeeCCCCCcC
Confidence            678888876543  66677777888999999999999999999988777654321 457889999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+..+.                         .+...+                   |++++|+.++.+.++++|+
T Consensus        80 ~~Gd~V~~~~~-------------------------~~~~~~-------------------g~~~~~~~~~~~~~~~~p~  115 (328)
T cd08268          80 AVGDRVSVIPA-------------------------ADLGQY-------------------GTYAEYALVPAAAVVKLPD  115 (328)
T ss_pred             CCCCEEEeccc-------------------------cccCCC-------------------ccceEEEEechHhcEeCCC
Confidence            99999987532                         111112                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+.+.+.++|+++.....+.++++|+|+|+ |.+|++++++++..|+ +++.++++.++.+.++++|++.++
T Consensus       116 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  194 (328)
T cd08268         116 GLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVI  194 (328)
T ss_pred             CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEE
Confidence            99999999999999999998777788999999999987 9999999999999999 889988889999999889998888


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +.+.
T Consensus       195 ~~~~  198 (328)
T cd08268         195 VTDE  198 (328)
T ss_pred             ecCC
Confidence            8765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.93  E-value=4.8e-24  Score=189.13  Aligned_cols=187  Identities=29%  Similarity=0.333  Sum_probs=161.8

Q ss_pred             eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      +|+.+..++.+  +.+.+.+.|.+.++||+|++.++++|+.|+....+.++.   .+|.++|||++|+|+.+|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~~   77 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGFK   77 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCCC
Confidence            45666655553  556677777788999999999999999999988776543   3577899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+...                              ..                   |+|++|+.++.+.++++|++
T Consensus        78 ~G~~V~~~~------------------------------~~-------------------g~~~~~~~~~~~~~~~~p~~  108 (320)
T cd05286          78 VGDRVAYAG------------------------------PP-------------------GAYAEYRVVPASRLVKLPDG  108 (320)
T ss_pred             CCCEEEEec------------------------------CC-------------------CceeEEEEecHHHceeCCCC
Confidence            999997632                              01                   38999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++.+++.+.+.+.++|.++....++.++++|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|++++++
T Consensus       109 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  187 (320)
T cd05286         109 ISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVIN  187 (320)
T ss_pred             CCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEe
Confidence            9999999888899999998777788999999999996 9999999999999999 8999999999999999999999988


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      ..+
T Consensus       188 ~~~  190 (320)
T cd05286         188 YRD  190 (320)
T ss_pred             CCc
Confidence            765

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.92  E-value=1.6e-23  Score=185.34  Aligned_cols=193  Identities=24%  Similarity=0.336  Sum_probs=162.2

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |++++++.++..  +++++.+.|.++++||+|++.++++|+.|+..+.+.... .....|.++|||++|+|+.+|+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            678888877653  456677777789999999999999999999988776421 11145889999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      +++||+|+..+..                           ..+                   |+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~~-------------------g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TRG-------------------GAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CCC-------------------CcceeEEEecHHHhccCC
Confidence            9999999865320                           011                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++..++.+.+.+.++|+++.+...+.++++|+|+|+ |.+|++++++++.+|+ +|+++..+. +.+.++++|.+++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~  192 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV  192 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence            999999999988899999997766667999999999997 9999999999999999 788887766 8888888999888


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      ++.+.
T Consensus       193 ~~~~~  197 (309)
T cd05289         193 IDYTK  197 (309)
T ss_pred             EeCCC
Confidence            88765

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.92  E-value=1.6e-23  Score=186.57  Aligned_cols=190  Identities=26%  Similarity=0.290  Sum_probs=164.2

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      ||++.+..++.+  +++.+.+.|.+.+++|+|++.++++|+.|+....+.+... ..+|.++|||++|+|+.+|+.+.+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~~~   79 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVSRW   79 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCCCC
Confidence            678888776655  5666777667889999999999999999999887765432 1457899999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                              +                   |++++|+.++...++++|+
T Consensus        80 ~~Gd~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~  110 (325)
T TIGR02824        80 KVGDRVCALVA------------------------------G-------------------GGYAEYVAVPAGQVLPVPE  110 (325)
T ss_pred             CCCCEEEEccC------------------------------C-------------------CcceeEEEecHHHcEeCCC
Confidence            99999975311                              1                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++.+++.+.+.+.++|+++.+...+.++++++|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++++|++.++
T Consensus       111 ~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (325)
T TIGR02824       111 GLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAI  189 (325)
T ss_pred             CCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence            99999999999999999998778889999999999987 9999999999999999 889998899998888889988888


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +...
T Consensus       190 ~~~~  193 (325)
T TIGR02824       190 NYRE  193 (325)
T ss_pred             ecCc
Confidence            7655

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08251 polyketide_synthase polyketide synthase

Probab=99.92  E-value=2e-23  Score=184.49  Aligned_cols=172  Identities=28%  Similarity=0.332  Sum_probs=152.3

Q ss_pred             cCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccc
Q 024496           35 VEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCK  114 (267)
Q Consensus        35 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~  114 (267)
                      .|.+.+++|+||+.++++|+.|+....+.++.. ..+|.++|+|++|+|+++|+++++|++||+|+....          
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTM-PPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCC-CCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC----------
Confidence            467889999999999999999999988775432 156889999999999999999999999999976432          


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHH
Q 024496          115 SSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA  194 (267)
Q Consensus       115 ~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~  194 (267)
                                        ..+                   |+|++|+.++.+.++++|+++++.+++.+++.+.++|+++
T Consensus        71 ------------------~~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l  113 (303)
T cd08251          71 ------------------ESM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF  113 (303)
T ss_pred             ------------------CCC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH
Confidence                              012                   3899999999999999999999999999999999999975


Q ss_pred             HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                       +...++++++|+|+++ |.+|++++++++.+|+ +|+++.+.+++.+.++++|++++++..+
T Consensus       114 -~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~  174 (303)
T cd08251         114 -ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE  174 (303)
T ss_pred             -HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC
Confidence             6788999999999965 9999999999999999 8999998999999999999999998876

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.91  E-value=2.7e-24  Score=164.79  Aligned_cols=108  Identities=34%  Similarity=0.596  Sum_probs=94.7

Q ss_pred             CCeEEEEEeeeeCChhhHHhHhcC-CCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCC
Q 024496           40 AWEIRIKILCTSLCHSDVTFWKSS-TDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKS  118 (267)
Q Consensus        40 ~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~  118 (267)
                      |+||||||++++||++|++.+.+. ....  .+|.++|||++|+|+++|+++++|++||+|++.+...|+.|++|..+.+
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~--~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~   78 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPP--KFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRP   78 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTS--SSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCC--CCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcc
Confidence            689999999999999999999994 3333  7899999999999999999999999999999999888999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496          119 NTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus       119 ~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      ++|.+...   +|+..+|                   +|+||+++|.++++|+
T Consensus        79 ~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   79 NLCPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GGTTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             ccCCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            99977665   5666666                   9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.91  E-value=1.1e-22  Score=180.76  Aligned_cols=189  Identities=30%  Similarity=0.445  Sum_probs=161.6

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCC-CCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPK-AWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |+|+++..++.+  +++.+.+ |.+. +++|+|++.++++|++|+..+.+.+.... ..|.++|||++|.|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~   78 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKP-PLPFVPGSEVAGVVEAVGEGVTG   78 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCC-CCCCcccceeEEEEEEeCCCCCC
Confidence            688888755443  6666777 6666 49999999999999999998877653221 34678999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      +++||+|+....                              .                   |++++|+.++.+.++++|
T Consensus        79 ~~~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip  109 (323)
T cd08241          79 FKVGDRVVALTG------------------------------Q-------------------GGFAEEVVVPAAAVFPLP  109 (323)
T ss_pred             CCCCCEEEEecC------------------------------C-------------------ceeEEEEEcCHHHceeCC
Confidence            999999976430                              1                   389999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ++++..+++.+.+.+.+||.++.....+.++++|+|+|+ |.+|++++++++.+|+ .|++++++.++.+.++++|++.+
T Consensus       110 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  188 (323)
T cd08241         110 DGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV  188 (323)
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCcee
Confidence            999999988888899999998776788999999999997 9999999999999999 79999989999999999999888


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      ++..+
T Consensus       189 ~~~~~  193 (323)
T cd08241         189 IDYRD  193 (323)
T ss_pred             eecCC
Confidence            88766

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.91  E-value=9.6e-23  Score=183.44  Aligned_cols=185  Identities=22%  Similarity=0.207  Sum_probs=152.3

Q ss_pred             eeEEeecCC----C--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCC
Q 024496           17 KAAICRIPG----K--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        17 ~a~~~~~~~----~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      |++++...+    .  .++++++|.|.+.+++|+||+.++++|+.|.....+..... ....+.++|+|++|+|+++|+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~   82 (329)
T cd05288           3 RQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRSP   82 (329)
T ss_pred             cEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCCC
Confidence            556665433    1  28889999999999999999999999998876555432211 0023467899999999999964


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-cce
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THV  168 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~-~~~  168 (267)
                        +|++||+|+..                                                    ++|++|+.++. +.+
T Consensus        83 --~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~~  108 (329)
T cd05288          83 --DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASGL  108 (329)
T ss_pred             --CCCCCCEEecc----------------------------------------------------cceEEEEEecchhhc
Confidence              79999999642                                                    26999999999 999


Q ss_pred             EEcCCCCC--hhhhhh-cchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          169 VKITPHIP--LGIACL-LSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       169 ~~iP~~~~--~~~aa~-l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++|++++  +..++. +.+.+.++|+++.+...+.++++|||+|+ |.+|++++++|+.+|+ +|+++++++++.+.++
T Consensus       109 ~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~  187 (329)
T cd05288         109 RKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLV  187 (329)
T ss_pred             EECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            99999985  545555 78899999998777788999999999986 9999999999999999 8999999999999998


Q ss_pred             H-cCCCEEECCCC
Q 024496          245 K-FGITDFINPAT  256 (267)
Q Consensus       245 ~-~G~~~vi~~~~  256 (267)
                      + +|+++++++++
T Consensus       188 ~~~g~~~~~~~~~  200 (329)
T cd05288         188 EELGFDAAINYKT  200 (329)
T ss_pred             hhcCCceEEecCC
Confidence            8 99999999876

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=1.1e-22  Score=181.29  Aligned_cols=180  Identities=24%  Similarity=0.291  Sum_probs=154.6

Q ss_pred             EEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCC
Q 024496           29 VIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDC  107 (267)
Q Consensus        29 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~  107 (267)
                      ++++.+.|.+.++||+|++.++++|++|+..+.|.+... ....|.++|||++|+|.++|+++.+|++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            677888888999999999999999999999987765310 01356789999999999999999999999999765321  


Q ss_pred             CCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhh
Q 024496          108 GECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV  187 (267)
Q Consensus       108 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~  187 (267)
                                               ...                   |+|++|+.++.+.++++|+++++.+++.+.+.+
T Consensus        93 -------------------------~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KGG-------------------GALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CCC-------------------ceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     011                   389999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          188 STGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       188 ~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .+||+++.....+.++++|+|+|+ |.+|++++++|+.+|+ +|++++++ ++.+.++++|++++++.+.
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~  196 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT  196 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC
Confidence            999998766667999999999997 9999999999999999 88888765 7888889999999988765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.90  E-value=7.4e-23  Score=178.19  Aligned_cols=180  Identities=21%  Similarity=0.250  Sum_probs=150.2

Q ss_pred             eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec--CCCcccCCCCEEEeeccC
Q 024496           28 LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG--EYVEEVKERDLVLPIFHR  105 (267)
Q Consensus        28 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG--~~v~~~~~Gd~V~~~~~~  105 (267)
                      |++++++.|+|+++|||||+.+.+++|.... +....+.-  -.|+-+|...+|.++...  +..+.|++||.|+..   
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~SY--~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~---  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAPSY--APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV---  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCccc--CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec---
Confidence            9999999999999999999999999995332 32322221  346778888777666643  557789999999653   


Q ss_pred             CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCCh--hhhhhc
Q 024496          106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL--GIACLL  183 (267)
Q Consensus       106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~--~~aa~l  183 (267)
                                                                       .+|++|..++.+.+.++.++.-+  .....+
T Consensus       101 -------------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvL  131 (340)
T COG2130         101 -------------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVL  131 (340)
T ss_pred             -------------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhc
Confidence                                                             27999999999999999865422  334457


Q ss_pred             chhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCCCCCccc
Q 024496          184 SCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPATCGDKT  261 (267)
Q Consensus       184 ~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~  261 (267)
                      .++..|||.++++..+.++|++|+|.+| |++|..+.|+||.+|+ +|+++..+++|.+.+++ +|+|.+|||++  +++
T Consensus       132 GmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~--~d~  208 (340)
T COG2130         132 GMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA--EDF  208 (340)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc--ccH
Confidence            7899999999999999999999999987 9999999999999999 99999999999999987 99999999999  887


Q ss_pred             cccc
Q 024496          262 VSQV  265 (267)
Q Consensus       262 ~~~v  265 (267)
                      .+++
T Consensus       209 ~~~L  212 (340)
T COG2130         209 AQAL  212 (340)
T ss_pred             HHHH
Confidence            6654

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.90  E-value=2.7e-22  Score=175.25  Aligned_cols=161  Identities=24%  Similarity=0.247  Sum_probs=144.5

Q ss_pred             CeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCC
Q 024496           41 WEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNT  120 (267)
Q Consensus        41 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~  120 (267)
                      +||+||+.++++|++|++...+..+    .+|.++|||++|+|+++|+.++.|++||+|+....                
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~----------------   60 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLAP----------------   60 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEec----------------
Confidence            5899999999999999999887652    45789999999999999999999999999976421                


Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCC
Q 024496          121 CSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGV  200 (267)
Q Consensus       121 c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~  200 (267)
                                                        |+|++|+.++.+.++++|+++++.+++.+.+++.++|.++.+...+
T Consensus        61 ----------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~  106 (293)
T cd05195          61 ----------------------------------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL  106 (293)
T ss_pred             ----------------------------------CcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhcc
Confidence                                              3899999999999999999999999999988999999987777899


Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC--CCEEECCCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG--ITDFINPAT  256 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G--~~~vi~~~~  256 (267)
                      ++|++|+|+|+ |.+|++++++++.+|+ ++++++++.++.+.++++|  ++.++++++
T Consensus       107 ~~g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (293)
T cd05195         107 QKGESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD  164 (293)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc
Confidence            99999999975 9999999999999999 8999988889999998888  788888765

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.89  E-value=1.1e-21  Score=176.22  Aligned_cols=188  Identities=23%  Similarity=0.302  Sum_probs=155.5

Q ss_pred             eeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |++++...+.  .+++.+.+.|.+.+++|+|++.++++|+.|...+.+.+... ...|.++|||++|+|+.+|+.+++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~~   79 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPFVPGFECAGTVEAVGEGVKDFK   79 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCC-CCCCCCCcceeEEEEEEECCCCcCCC
Confidence            4556655443  26777777778899999999999999999999887765422 14577899999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|+....                              +                   |+|++|+.++.+.++++|++
T Consensus        80 ~G~~V~~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~ip~~  110 (337)
T cd08275          80 VGDRVMGLTR------------------------------F-------------------GGYAEVVNVPADQVFPLPDG  110 (337)
T ss_pred             CCCEEEEecC------------------------------C-------------------CeeeeEEEecHHHeEECCCC
Confidence            9999976421                              1                   38999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHHHHHHcCCCEEE
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFEIGKKFGITDFI  252 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~~~~~~G~~~vi  252 (267)
                      +++.+++.+.+.+.++|+++.+...++++++|+|+|+ |.+|++++++|+.+ . .+.+++ ..+++.+.++++|++.++
T Consensus       111 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~-~~~~~~~~~~~~~~~~~~~g~~~~~  188 (337)
T cd08275         111 MSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-P-NVTVVGTASASKHEALKENGVTHVI  188 (337)
T ss_pred             CCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-c-CcEEEEeCCHHHHHHHHHcCCcEEe
Confidence            9999999999999999998878888999999999997 99999999999998 2 233332 235577888889999898


Q ss_pred             CCCC
Q 024496          253 NPAT  256 (267)
Q Consensus       253 ~~~~  256 (267)
                      +.++
T Consensus       189 ~~~~  192 (337)
T cd08275         189 DYRT  192 (337)
T ss_pred             eCCC
Confidence            8776

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>smart00829 PKS_ER Enoylreductase

Probab=99.88  E-value=1e-21  Score=171.59  Aligned_cols=156  Identities=24%  Similarity=0.277  Sum_probs=140.9

Q ss_pred             EEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCC
Q 024496           45 IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF  124 (267)
Q Consensus        45 Vkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~  124 (267)
                      ||+.++++|++|++...+.++     .|.++|||++|+|+++|+.++.|++||+|+....                    
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~--------------------   56 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP--------------------   56 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC--------------------
Confidence            789999999999999877643     3578999999999999999999999999976421                    


Q ss_pred             CCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCC
Q 024496          125 GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGS  204 (267)
Q Consensus       125 ~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~  204 (267)
                                                    |+|++|+.++.++++++|+++++.+++.+.+.+.++|+++.+...+.+|+
T Consensus        57 ------------------------------g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~  106 (288)
T smart00829       57 ------------------------------GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGE  106 (288)
T ss_pred             ------------------------------CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCC
Confidence                                          38999999999999999999999999999999999999876778899999


Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC--CEEECCCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI--TDFINPAT  256 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~--~~vi~~~~  256 (267)
                      +|+|+|+ |.+|++++++++.+|+ +|+++++++++.+.++++|+  +.++++++
T Consensus       107 ~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~  160 (288)
T smart00829      107 SVLIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD  160 (288)
T ss_pred             EEEEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC
Confidence            9999985 9999999999999999 89999999999999999998  78888766

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.79  E-value=1.9e-18  Score=152.08  Aligned_cols=132  Identities=30%  Similarity=0.398  Sum_probs=118.3

Q ss_pred             CCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceec
Q 024496           70 PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIH  149 (267)
Q Consensus        70 ~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~  149 (267)
                      ++|.++|||++|+|+++|+++++|++||+|+..                                               
T Consensus        19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------------   51 (277)
T cd08255          19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------------   51 (277)
T ss_pred             cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------------
Confidence            588999999999999999999999999999763                                               


Q ss_pred             ccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 024496          150 HFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASK  229 (267)
Q Consensus       150 ~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~  229 (267)
                           +.|++|++++.+.++++|+++++.+++.+ +.+.+||+++ ...++.++++++|+|+|.+|++++++|+.+|+.+
T Consensus        52 -----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~  124 (277)
T cd08255          52 -----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAKAAGARE  124 (277)
T ss_pred             -----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCc
Confidence                 15899999999999999999999999888 7899999975 5788999999999988999999999999999944


Q ss_pred             EEEEcCChhhHHHHHHcC-CCEEECCC
Q 024496          230 IIGVDINPEKFEIGKKFG-ITDFINPA  255 (267)
Q Consensus       230 vi~~~~~~~~~~~~~~~G-~~~vi~~~  255 (267)
                      |+++++++++.+.++++| ++++++..
T Consensus       125 vi~~~~~~~~~~~~~~~g~~~~~~~~~  151 (277)
T cd08255         125 VVGVDPDAARRELAEALGPADPVAADT  151 (277)
T ss_pred             EEEECCCHHHHHHHHHcCCCccccccc
Confidence            999999999999989999 66666553

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.76  E-value=5.6e-17  Score=141.22  Aligned_cols=170  Identities=26%  Similarity=0.261  Sum_probs=131.1

Q ss_pred             EEeecC-CCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccce----eeEEEEEEecCCCcccCCCCEEEeeccC
Q 024496           31 EEIEVE-PPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGH----EAVGVVESVGEYVEEVKERDLVLPIFHR  105 (267)
Q Consensus        31 ~~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~----e~~G~V~~vG~~v~~~~~Gd~V~~~~~~  105 (267)
                      .+++.+ .+++++||||.++-+..|..--.+....+... -.|+.+|.    .++|+|++  +..++|++||.|....  
T Consensus        27 ~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y-~~~~~~G~pi~g~GV~kVi~--S~~~~~~~GD~v~g~~--  101 (343)
T KOG1196|consen   27 TTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDY-APPYEPGKPIDGFGVAKVID--SGHPNYKKGDLVWGIV--  101 (343)
T ss_pred             eeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccc-cCcccCCcEecCCceEEEEe--cCCCCCCcCceEEEec--
Confidence            445544 45889999999999999885433322222110 12344443    67888888  4667899999995431  


Q ss_pred             CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc--eEEcC--CCCChhhhh
Q 024496          106 DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH--VVKIT--PHIPLGIAC  181 (267)
Q Consensus       106 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~--~~~iP--~~~~~~~aa  181 (267)
                                                                        +|.||.+++.+.  .++|+  .++++....
T Consensus       102 --------------------------------------------------gWeeysii~~~~~~~~ki~~~~~~pLs~yl  131 (343)
T KOG1196|consen  102 --------------------------------------------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYL  131 (343)
T ss_pred             --------------------------------------------------cceEEEEecCcchhcccCCCCCccCHhhhh
Confidence                                                              799999997653  44444  455655533


Q ss_pred             -hcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCCEEECCCC
Q 024496          182 -LLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGITDFINPAT  256 (267)
Q Consensus       182 -~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~~vi~~~~  256 (267)
                       ++.++..|||.++++....++|++|+|.|| |++|+++.|+|+.+|+ +|+++..++||..+++ +||+|..+||++
T Consensus       132 g~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~  208 (343)
T KOG1196|consen  132 GLLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE  208 (343)
T ss_pred             hccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC
Confidence             577899999999999999999999999987 9999999999999999 9999999999999997 579999999999

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.57  E-value=5.8e-15  Score=146.00  Aligned_cols=162  Identities=17%  Similarity=0.097  Sum_probs=138.3

Q ss_pred             CCCeEEEEEeeeeCChhhHHhHhcCCCCCCC-----CCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCccc
Q 024496           39 KAWEIRIKILCTSLCHSDVTFWKSSTDLPKL-----PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDC  113 (267)
Q Consensus        39 ~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~-----~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c  113 (267)
                      +++.=+--|.|+.||..|+.+..|..+.+..     +.-..+|-||+|+          .+-|.||.....         
T Consensus      1443 ~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRvM~mvp--------- 1503 (2376)
T KOG1202|consen 1443 CPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRVMGMVP--------- 1503 (2376)
T ss_pred             CCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEEEEeee---------
Confidence            5666688899999999999999998876631     2236899999997          567999965422         


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHH
Q 024496          114 KSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA  193 (267)
Q Consensus       114 ~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a  193 (267)
                                           .-                   ++++.+.++.+++|.+|.+...++|+..+|.|+|+|+|
T Consensus      1504 ---------------------Ak-------------------sLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYA 1543 (2376)
T KOG1202|consen 1504 ---------------------AK-------------------SLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYA 1543 (2376)
T ss_pred             ---------------------hh-------------------hhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhh
Confidence                                 11                   78999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCCEEECCCCCCcccc
Q 024496          194 AWKVAGVEVGSTVAIF-GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK----FGITDFINPATCGDKTV  262 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~-G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~  262 (267)
                      +..+...++|++|||+ |+|++|++||.+|.+.|+ +|+-+..++||++.+++    +-..++-|+++  .+|-
T Consensus      1544 LVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRd--tsFE 1614 (2376)
T KOG1202|consen 1544 LVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANSRD--TSFE 1614 (2376)
T ss_pred             hhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccccc--ccHH
Confidence            9999999999999999 569999999999999999 99999999999998863    45677788877  6553

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=98.27  E-value=1.1e-06  Score=68.50  Aligned_cols=50  Identities=34%  Similarity=0.481  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCccccccc
Q 024496          213 AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       213 ~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      ++|++++|+|+++|+ +|++++++++|++.++++|+++++|+++  +++.+++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~--~~~~~~i   50 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD--DDFVEQI   50 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT--SSHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc--ccccccc
Confidence            589999999999996 9999999999999999999999999999  7665554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.17  E-value=9.4e-06  Score=77.69  Aligned_cols=56  Identities=23%  Similarity=0.233  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE-ECCCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF-INPAT  256 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v-i~~~~  256 (267)
                      ..++++|+|+|+|.+|+++++.|+.+|+ +|+++|++++++++++++|++.+ +|..+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e  218 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEE  218 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEecccc
Confidence            5689999999999999999999999999 89999999999999999999854 67644

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.92  E-value=3.6e-07  Score=85.76  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             ccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 024496           74 IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLN  153 (267)
Q Consensus        74 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  153 (267)
                      .-|.|+++.+.+|+++.++     +|++.+.+ ||.|.+|    ++.|.+...   .|...++                 
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~-----------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER-----------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            4688999999999988766     67777777 8999999    445544443   3333333                 


Q ss_pred             ccceeeeEEeeccceEE---c-CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 024496          154 ISSFTEYSVVDITHVVK---I-TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASK  229 (267)
Q Consensus       154 ~g~~a~y~~v~~~~~~~---i-P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~  229 (267)
                        .|++++.++. .+..   | +..++...++         ..-..+..+..++++|+|+|+|.+|.++++.++..|+.+
T Consensus       139 --lf~~a~~~~k-~vr~~t~i~~~~vSv~~~A---------v~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~  206 (417)
T TIGR01035       139 --LFQKAFSVGK-RVRTETDISAGAVSISSAA---------VELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGK  206 (417)
T ss_pred             --HHHHHHHHhh-hhhhhcCCCCCCcCHHHHH---------HHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCE
Confidence              7888888765 3322   2 2222222221         111233445577899999999999999999999999779


Q ss_pred             EEEEcCChhhHH-HHHHcCC
Q 024496          230 IIGVDINPEKFE-IGKKFGI  248 (267)
Q Consensus       230 vi~~~~~~~~~~-~~~~~G~  248 (267)
                      |++++++.++.+ +++++|.
T Consensus       207 V~v~~rs~~ra~~la~~~g~  226 (417)
T TIGR01035       207 ILIANRTYERAEDLAKELGG  226 (417)
T ss_pred             EEEEeCCHHHHHHHHHHcCC
Confidence            999999988755 4555654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.52  E-value=0.00037  Score=65.21  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=50.2

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      .++.+..+ ..+|++|+|+|.|.+|+.+++.++.+|+ +|+++++++.|++.++++|++.
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~  248 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEV  248 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEE
Confidence            44555444 4789999999999999999999999999 8999999999999999999853

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.50  E-value=2.4e-06  Score=80.39  Aligned_cols=135  Identities=21%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             ccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 024496           74 IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLN  153 (267)
Q Consensus        74 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  153 (267)
                      .-|||+++.+.+|+++.++     +|++-+.+ ||.|..    .++.|.+.+.   .|...+                  
T Consensus        91 ~~g~ea~~hl~~V~~GldS-----~V~GE~qI-lgQvk~----a~~~a~~~g~---~g~~l~------------------  139 (423)
T PRK00045         91 HEGEEAVRHLFRVASGLDS-----MVLGEPQI-LGQVKD----AYALAQEAGT---VGTILN------------------  139 (423)
T ss_pred             cCCHHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHH----HHHHHHHcCC---chHHHH------------------
Confidence            4599999999999999877     44444443 444441    1222322221   111111                  


Q ss_pred             ccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHh---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeE
Q 024496          154 ISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVA---GVEVGSTVAIFGLGAVGLAVAEGARLNRASKI  230 (267)
Q Consensus       154 ~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~---~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~v  230 (267)
                       +.|++.+.+        |+.+..+.+.. ..+.+.++.++....   +..++++|+|+|+|.+|.+++..++..|+.+|
T Consensus       140 -~lf~~a~~~--------~k~v~~~t~i~-~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V  209 (423)
T PRK00045        140 -RLFQKAFSV--------AKRVRTETGIG-AGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKI  209 (423)
T ss_pred             -HHHHHHHHH--------HhhHhhhcCCC-CCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeE
Confidence             245554444        33333222222 224455555543222   23678999999999999999999999998899


Q ss_pred             EEEcCChhhHH-HHHHcCCC
Q 024496          231 IGVDINPEKFE-IGKKFGIT  249 (267)
Q Consensus       231 i~~~~~~~~~~-~~~~~G~~  249 (267)
                      ++++++.++.+ +++++|.+
T Consensus       210 ~v~~r~~~ra~~la~~~g~~  229 (423)
T PRK00045        210 TVANRTLERAEELAEEFGGE  229 (423)
T ss_pred             EEEeCCHHHHHHHHHHcCCc
Confidence            99999988865 55666653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.29  E-value=0.0004  Score=62.76  Aligned_cols=85  Identities=18%  Similarity=0.177  Sum_probs=64.8

Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhC---CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH-HH
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAG---VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF-EI  242 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~---~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~-~~  242 (267)
                      ..+++|+.+..+.++... +.+.++.++.....   .-++.+|+|+|+|.+|.++++.++..|..+|+++++++++. ++
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            456778888888887765 66677765432222   24789999999999999999999988887999999998876 55


Q ss_pred             HHHcCCCEEEC
Q 024496          243 GKKFGITDFIN  253 (267)
Q Consensus       243 ~~~~G~~~vi~  253 (267)
                      ++++|.. +++
T Consensus       219 a~~~g~~-~~~  228 (311)
T cd05213         219 AKELGGN-AVP  228 (311)
T ss_pred             HHHcCCe-EEe
Confidence            6678873 444

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.14  E-value=0.0015  Score=62.76  Aligned_cols=50  Identities=26%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .++++|+|+|+|.+|++++++++.+|+ .|++++++.++++.++++|++.+
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v  211 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL  211 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence            467899999999999999999999999 79999999999999999998763

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.91  E-value=0.0061  Score=53.25  Aligned_cols=83  Identities=23%  Similarity=0.291  Sum_probs=56.3

Q ss_pred             ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      +|.+|.. +...++.+++++++..+..-. ... ....+.  ....++++||-+|+|. |.+++.+++ .|+.+|+++|.
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~h~t-t~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi  150 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGTHPT-TRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI  150 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCCCHH-HHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence            3555544 667788899888887654322 111 122121  2257899999999987 877776655 67767999999


Q ss_pred             ChhhHHHHHH
Q 024496          236 NPEKFEIGKK  245 (267)
Q Consensus       236 ~~~~~~~~~~  245 (267)
                      ++..++.+++
T Consensus       151 s~~~l~~A~~  160 (250)
T PRK00517        151 DPQAVEAARE  160 (250)
T ss_pred             CHHHHHHHHH
Confidence            9988887754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.89  E-value=0.0029  Score=61.80  Aligned_cols=55  Identities=18%  Similarity=0.220  Sum_probs=46.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---------------------hhhHHHHHHcCCCEEECC
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN---------------------PEKFEIGKKFGITDFINP  254 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~---------------------~~~~~~~~~~G~~~vi~~  254 (267)
                      ....|++|+|+|+|++|+++++.++.+|+ +|++++..                     ..+++.++++|++..++.
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~  208 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGV  208 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCC
Confidence            46789999999999999999999999999 78888742                     356677888998877764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.78  E-value=0.0053  Score=48.49  Aligned_cols=48  Identities=31%  Similarity=0.340  Sum_probs=42.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-Hc
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KF  246 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~  246 (267)
                      +--++.+++|+|+|+.|.+++..+...|+++|+++.|+.+|.+.+. ++
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~   56 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF   56 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc
Confidence            3457899999999999999999999999988999999999887765 45

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.70  E-value=0.012  Score=52.74  Aligned_cols=47  Identities=19%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+++|+|+|.|.+|++++..++.+|+ +|+++++++++.+.++++|+.
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~  197 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLS  197 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCe
Confidence            68999999999999999999999999 999999998888777777754

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.66  E-value=0.0075  Score=56.76  Aligned_cols=59  Identities=22%  Similarity=0.241  Sum_probs=46.7

Q ss_pred             HHHHHHHHhCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          190 GVGAAWKVAGVE-VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       190 a~~a~~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .|.++.+..++. .|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|++
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~  257 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR  257 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE
Confidence            344444443544 89999999999999999999999999 899999988887665555543

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.56  E-value=0.0097  Score=55.69  Aligned_cols=56  Identities=23%  Similarity=0.303  Sum_probs=46.2

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++.+..+ ...|++|+|+|.|.+|+..++.++.+|+ +|+++++++.+...+...|+
T Consensus       183 ~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~  239 (406)
T TIGR00936       183 DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGF  239 (406)
T ss_pred             HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCC
Confidence            33444444 4789999999999999999999999999 89999988888776666676

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02494 adenosylhomocysteinase

Probab=96.18  E-value=0.022  Score=54.17  Aligned_cols=58  Identities=22%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             HHHHHHHhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          191 VGAAWKVAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       191 ~~a~~~~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +.++.+..++ -.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+.
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~  299 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQ  299 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCe
Confidence            3445555554 679999999999999999999999999 899999888776666555553

>PRK04148 hypothetical protein; Provisional

Probab=95.85  E-value=0.041  Score=43.51  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=42.2

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ....++.+++++|.| .|...+..+..+|. .|+++|.+++..+.+++.+.+.+.+
T Consensus        12 ~~~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~d   65 (134)
T PRK04148         12 YEKGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVD   65 (134)
T ss_pred             cccccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEEC
Confidence            334567899999999 88755555556798 9999999999999999888765543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.85  E-value=0.026  Score=46.20  Aligned_cols=48  Identities=27%  Similarity=0.302  Sum_probs=40.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ..+|+|+|+|.+|+.|+.+++.+|+ ++++.+...++++.....++..+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i   67 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFI   67 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEES
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceE
Confidence            3789999999999999999999999 99999999998888888776544

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.63  E-value=0.038  Score=53.06  Aligned_cols=50  Identities=22%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+.++++|+|+|.|..|++++.+++..|+ +|+++|..+++.+.++++|+.
T Consensus         8 ~~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~   57 (488)
T PRK03369          8 PLLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVA   57 (488)
T ss_pred             cccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCE
Confidence            35678999999999999999999999999 999999887777667777874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.58  E-value=0.073  Score=47.51  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=39.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..+++|+|+|+|+.|.+++..+..+|+.+|++++|+.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            45689999999999999999999999989999999998877663

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.51  E-value=0.088  Score=47.07  Aligned_cols=46  Identities=20%  Similarity=0.334  Sum_probs=39.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|++++|+|.|.+|.+.+..++.+|+ +|+++++++++.+.+.++|.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~  195 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGL  195 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            57899999999999999999999999 99999999887766655554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.50  E-value=0.084  Score=46.85  Aligned_cols=47  Identities=23%  Similarity=0.042  Sum_probs=40.1

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+...+++++|+|+|+.+.+++..+..+|+.+|+++.|+.++.+.+.
T Consensus       117 ~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la  163 (272)
T PRK12550        117 YQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA  163 (272)
T ss_pred             cCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH
Confidence            34555679999999999999999998999988999999998887664

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.20  E-value=0.063  Score=49.76  Aligned_cols=46  Identities=30%  Similarity=0.307  Sum_probs=38.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+. .+|.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~  212 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGG  212 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCc
Confidence            44669999999999999999999999 8999999988877664 3443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.17  E-value=0.17  Score=48.29  Aligned_cols=56  Identities=23%  Similarity=0.326  Sum_probs=42.9

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~  298 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGY  298 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCc
Confidence            33444433 4579999999999999999999999999 89999887766644444454

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=95.16  E-value=0.061  Score=47.30  Aligned_cols=48  Identities=33%  Similarity=0.512  Sum_probs=40.6

Q ss_pred             HhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHH
Q 024496          197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKK  245 (267)
Q Consensus       197 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~  245 (267)
                      ...++++++||.+|+|. |..+.++++..+.. +|+++|.+++.++.+++
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~  120 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARA  120 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHH
Confidence            35688999999999987 88888888877763 79999999999988875

>PRK08017 oxidoreductase; Provisional

Probab=95.15  E-value=0.078  Score=45.58  Aligned_cols=47  Identities=19%  Similarity=0.314  Sum_probs=40.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ++++|.|+ |.+|...++.+...|+ +|++++++.++++.++++++..+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~   50 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGI   50 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEE
Confidence            57999998 9999999999998898 89999999988887777776443

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.12  E-value=0.099  Score=46.65  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..+++++|+|+|+.+.+++..+...|+++++++.|+.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            45789999999999999888888899989999999998877664

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.08  E-value=0.092  Score=44.34  Aligned_cols=54  Identities=41%  Similarity=0.529  Sum_probs=44.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINPA  255 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~~  255 (267)
                      --.|.+|+|+|.|.+|..+++.+...|+ +|+++++++++.+.+++ +|+. .++..
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~   79 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPE   79 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcch
Confidence            4467899999999999999999999999 99999999988777654 4753 44443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.98  E-value=0.072  Score=47.47  Aligned_cols=43  Identities=19%  Similarity=0.177  Sum_probs=38.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++++|+|+|+.+.+++..+..+|+.+|+++.|+.+|.+.+.
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La  166 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLV  166 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence            5789999999999999999998999989999999988877664

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.90  E-value=0.081  Score=47.20  Aligned_cols=46  Identities=28%  Similarity=0.208  Sum_probs=40.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..++++++|+|+|+.+.+++.-+...|+.+|.++.|+.+|.+.+.+
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            3468999999999999999999999998899999999999877753

>PRK05993 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.073  Score=46.74  Aligned_cols=47  Identities=13%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+++|+|.|+ |++|...++.+...|+ +|+++++++++++.+.+.+..
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~   50 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLE   50 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCce
Confidence            3578999998 9999999888888899 999999999888777666654

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=94.78  E-value=0.16  Score=44.98  Aligned_cols=44  Identities=23%  Similarity=0.103  Sum_probs=38.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~  164 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA  164 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            46788999999999999999999999779999999998876654

>PRK08324 short chain dehydrogenase; Validated

Probab=94.69  E-value=0.068  Score=53.45  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=54.5

Q ss_pred             ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496          156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      ++.+|..++...++.+ +..+.+++......          .....+|+++||.|+ |++|.+.++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            5667777777666666 44555555321100          122346899999986 9999999999999999 899999


Q ss_pred             CChhhHHHHH
Q 024496          235 INPEKFEIGK  244 (267)
Q Consensus       235 ~~~~~~~~~~  244 (267)
                      ++.++.+.+.
T Consensus       454 r~~~~~~~~~  463 (681)
T PRK08324        454 LDEEAAEAAA  463 (681)
T ss_pred             CCHHHHHHHH
Confidence            9988766543

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.63  E-value=0.11  Score=44.22  Aligned_cols=41  Identities=32%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++|+|.|+ |.+|..+++.+...|+ +|+++++++++.+.+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   45 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRM   45 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999987 8999999999999999 999999988877665

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=94.56  E-value=0.11  Score=42.85  Aligned_cols=46  Identities=37%  Similarity=0.538  Sum_probs=37.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++.++.........+.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~   79 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFG   79 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccc
Confidence            468999999999999999999999999 9999998887655333333

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.18  E-value=0.16  Score=48.49  Aligned_cols=52  Identities=31%  Similarity=0.423  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh---------------------hhHHHHHHcCCCEEECC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP---------------------EKFEIGKKFGITDFINP  254 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~---------------------~~~~~~~~~G~~~vi~~  254 (267)
                      .+++|+|+|+|+.|+.++..++..|. +|++++..+                     ...++++++|++..++.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~  212 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC  212 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence            57899999999999999999999999 788887653                     24566778898755554

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05693 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.13  Score=44.97  Aligned_cols=45  Identities=22%  Similarity=0.257  Sum_probs=36.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +++||.|+ |++|...++.+...|+ +|++++++.++.+.+.+.+..
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   47 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFT   47 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe
Confidence            47899987 9999999998888899 999999988777766555543

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=94.11  E-value=0.17  Score=44.61  Aligned_cols=44  Identities=23%  Similarity=0.201  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ...+.+++|.|| +++|...+..+-..|. +++.+.|+++|++.+.
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la   47 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALA   47 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHH
Confidence            456789999998 8999988887777899 9999999999998875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=94.10  E-value=0.24  Score=44.23  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+++++|+|+|++|.+++..+...|+++|+++.|+.
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            4578899999999999988888888997799999885

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=93.94  E-value=0.24  Score=44.28  Aligned_cols=37  Identities=16%  Similarity=0.251  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++++|+|+|+.+.+++..+...|+.++.++.|++
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3667999999999998877766678998999999984

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=93.94  E-value=0.18  Score=43.80  Aligned_cols=45  Identities=24%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      +++.++|.|+ +++|.+.++.....|+ +|+.+.|..++++.+. +++
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~   51 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIG   51 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhc
Confidence            4577899998 8999999999999999 9999999999998876 577

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=93.89  E-value=0.38  Score=40.08  Aligned_cols=43  Identities=23%  Similarity=0.239  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++.+++|+|+ |.+|...+..+...|+ +|+++.|+.++.+.+.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~   69 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAA   69 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            36789999997 9999988888877887 9999999988766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.86  E-value=0.5  Score=38.82  Aligned_cols=71  Identities=14%  Similarity=0.082  Sum_probs=46.7

Q ss_pred             hhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCCEEECC
Q 024496          181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGA-VGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGITDFINP  254 (267)
Q Consensus       181 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~-vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~~vi~~  254 (267)
                      ...+|....+...+.....--.+.+|+|+|+|. +|..++.++...|+ +|.++.++.+.+.. +.  .+|-||..
T Consensus        22 ~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~~~l~~~l~--~aDiVIsa   94 (168)
T cd01080          22 GFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKTKNLKEHTK--QADIVIVA   94 (168)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCchhHHHHHh--hCCEEEEc
Confidence            444544444444333334457899999999985 69989999998999 78888877644432 32  34555544

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=93.85  E-value=0.47  Score=37.65  Aligned_cols=52  Identities=35%  Similarity=0.354  Sum_probs=39.5

Q ss_pred             HhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496          197 VAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI  248 (267)
Q Consensus       197 ~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~  248 (267)
                      ..++ ..+.+++|+|+|.+|...+..+...|..+|++++++.++.+.+ ++++.
T Consensus        12 ~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~   65 (155)
T cd01065          12 EAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE   65 (155)
T ss_pred             hhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            3443 5578999999999999988888877655899999998877654 34443

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06949 short chain dehydrogenase; Provisional

Probab=93.84  E-value=0.2  Score=43.08  Aligned_cols=42  Identities=17%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++|+|+|+ |.+|...+..+...|+ +|+++++++++++.+
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   49 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKEL   49 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999987 9999999998888899 899999988876544

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=93.79  E-value=0.19  Score=42.74  Aligned_cols=43  Identities=28%  Similarity=0.298  Sum_probs=38.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      -|.+|||.|+ +++|++.++-...+|- +||+++|++++++.++.
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~   47 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKA   47 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHh
Confidence            3678999975 8999998888888898 99999999999999876

>PRK05872 short chain dehydrogenase; Provisional

Probab=93.54  E-value=0.23  Score=44.17  Aligned_cols=45  Identities=22%  Similarity=0.354  Sum_probs=37.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      +++++||.|+ |++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~   54 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELG   54 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc
Confidence            5789999987 8999999999988999 8999999988776543 444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.52  E-value=0.24  Score=37.33  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=39.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.+++.|.. ++..+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~-~i~gd~   49 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVE-VIYGDA   49 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSE-EEES-T
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhcccc-cccccc
Confidence            6788999999999999998665 999999999999999998854 544433

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=93.51  E-value=0.24  Score=43.05  Aligned_cols=41  Identities=12%  Similarity=0.094  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   50 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEV   50 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999999998888999 999999988766544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.51  E-value=0.23  Score=42.34  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~   45 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERV   45 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999997 9999998888888899 799999998776554

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=93.42  E-value=0.094  Score=28.34  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=15.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP   38 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~   38 (267)
                      |||++++++++ .+++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            89999999999 99999998865

>PRK06057 short chain dehydrogenase; Provisional

Probab=93.41  E-value=0.25  Score=42.57  Aligned_cols=45  Identities=29%  Similarity=0.403  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  247 (267)
                      ++++|+|.|+ |.+|...++.+...|+ +|+++++++++.+.. .+++
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~   52 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVG   52 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcC
Confidence            5789999998 9999999998888898 899999888766544 3344

>PRK08339 short chain dehydrogenase; Provisional

Probab=93.34  E-value=0.25  Score=43.06  Aligned_cols=41  Identities=20%  Similarity=0.179  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   48 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKA   48 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999999998888999 899999988776554

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=93.32  E-value=0.26  Score=42.63  Aligned_cols=42  Identities=21%  Similarity=0.239  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++++|.|+ +++|...+..+...|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLR   47 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999987 8999999888888899 8999999887776654

>PRK07060 short chain dehydrogenase; Provisional

Probab=93.31  E-value=0.33  Score=41.28  Aligned_cols=46  Identities=20%  Similarity=0.263  Sum_probs=37.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~  248 (267)
                      ++++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+.+ .+.
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~   55 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGC   55 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            5689999997 8999999999998999 89999998877765543 344

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.30  E-value=0.23  Score=49.51  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++|+|+|+|+.|++++..+..+|+ +|+++++.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~  360 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHP  360 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            57899999999999999999999999 788887653

>PRK12829 short chain dehydrogenase; Provisional

Probab=93.28  E-value=0.32  Score=41.89  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=37.9

Q ss_pred             hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          198 AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       198 ~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ....++.++||.|+ |.+|...+..+...|+ +|++++++++..+.+.
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~   52 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATA   52 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            34467899999988 9999999999888999 8999999877666544

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.26  E-value=0.25  Score=49.10  Aligned_cols=52  Identities=29%  Similarity=0.338  Sum_probs=42.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh---------------------hHHHHHHcCCCEEECC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE---------------------KFEIGKKFGITDFINP  254 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~---------------------~~~~~~~~G~~~vi~~  254 (267)
                      .+++|+|+|+|+.|+.++..++.+|. +|.++++.+.                     +.++++++|++..++.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~  381 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC  381 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence            48999999999999999999999999 7888876652                     4566778888765554

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=93.26  E-value=1.5  Score=39.74  Aligned_cols=96  Identities=10%  Similarity=0.069  Sum_probs=61.0

Q ss_pred             ceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHh---CCCCCCEEEEEcC-CHHHHHHHHHHH-HcCCCeE
Q 024496          156 SFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVA---GVEVGSTVAIFGL-GAVGLAVAEGAR-LNRASKI  230 (267)
Q Consensus       156 ~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~---~~~~g~~VlI~G~-g~vG~~a~~la~-~~g~~~v  230 (267)
                      .|-+|.++..+..+.  .+.+..++++-+ .+.|.|- +.+-.   +.-..+.|+|..| +-.++..+.+++ ..+.-++
T Consensus        90 ~YN~Y~r~~~d~~y~--~~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYD--PEREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccC--cchhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            466777776555442  122233344444 6677776 43332   2444567777776 788888888877 4555589


Q ss_pred             EEEcCChhhHHHHHHcC-CCEEECCCC
Q 024496          231 IGVDINPEKFEIGKKFG-ITDFINPAT  256 (267)
Q Consensus       231 i~~~~~~~~~~~~~~~G-~~~vi~~~~  256 (267)
                      |++.+ +......+.+| .|+|+.|++
T Consensus       166 vglTS-~~N~~Fve~lg~Yd~V~~Yd~  191 (314)
T PF11017_consen  166 VGLTS-ARNVAFVESLGCYDEVLTYDD  191 (314)
T ss_pred             EEEec-CcchhhhhccCCceEEeehhh
Confidence            99985 44555788899 489999988

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=93.24  E-value=0.72  Score=37.68  Aligned_cols=55  Identities=22%  Similarity=0.324  Sum_probs=39.0

Q ss_pred             HHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          194 AWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       194 ~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +.+..+ .-.|++++|+|=|.+|...++.++.+|+ +|++++.++-+.-++..-|++
T Consensus        13 i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~   68 (162)
T PF00670_consen   13 IMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE   68 (162)
T ss_dssp             HHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E
T ss_pred             HHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE
Confidence            444444 5689999999999999999999999999 999999999777666555543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=93.23  E-value=0.48  Score=40.82  Aligned_cols=37  Identities=30%  Similarity=0.292  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCC--eEEEEcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRAS--KIIGVDIN  236 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~--~vi~~~~~  236 (267)
                      --++++|+|+|+|..|.+++..+...|+.  ++++++++
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            35678999999999999999988888998  89999998

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=93.22  E-value=0.28  Score=42.17  Aligned_cols=40  Identities=28%  Similarity=0.400  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAA   49 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            5789999987 9999999888888899 89999998776544

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.17  E-value=0.3  Score=41.66  Aligned_cols=41  Identities=32%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |++|...++.+...|+ +|+++++++++.+..
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~   45 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEA   45 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 9999999998888898 899999887665443

>PRK06182 short chain dehydrogenase; Validated

Probab=93.17  E-value=0.36  Score=42.08  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=37.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      ++++++|.|+ |.+|...++.+...|+ +|+++++++++++.+.+.+.
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~   48 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGV   48 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCC
Confidence            4678999997 8999999998888899 99999998887765544443

>PRK05867 short chain dehydrogenase; Provisional

Probab=93.13  E-value=0.3  Score=42.06  Aligned_cols=41  Identities=20%  Similarity=0.097  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++.++.+.+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKL   49 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5789999987 8999999988888999 899999988776554

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=93.05  E-value=0.53  Score=44.32  Aligned_cols=50  Identities=18%  Similarity=0.111  Sum_probs=41.3

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      .+--.+.+|+|+|+|.+|.+++..+...|+.+++++.|+.++.+.+. +++
T Consensus       176 ~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~  226 (414)
T PRK13940        176 LDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFR  226 (414)
T ss_pred             hcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhc
Confidence            34456789999999999999999999999889999999988766554 454

>PRK07326 short chain dehydrogenase; Provisional

Probab=93.05  E-value=0.3  Score=41.37  Aligned_cols=41  Identities=22%  Similarity=0.247  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEA   46 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHH
Confidence            4688999987 9999998888888899 899999988766544

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=93.02  E-value=0.3  Score=42.33  Aligned_cols=43  Identities=16%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++++|.|+ |++|...++.+...|+ +|++++++.++.+.+++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~   47 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEA   47 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh
Confidence            4789999987 8999999988888899 89999998877666544

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.91  E-value=0.32  Score=43.26  Aligned_cols=41  Identities=20%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ |++|.+.++.+...|+ +|++++++.++++.+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~   80 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAV   80 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4578999987 9999998888888898 999999998776554

>PLN02780 ketoreductase/ oxidoreductase

Probab=92.90  E-value=0.27  Score=44.45  Aligned_cols=41  Identities=22%  Similarity=0.210  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .|++++|.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~   93 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDV   93 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHH
Confidence            5889999998 8999988877777899 899999999887655

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=92.90  E-value=0.27  Score=48.06  Aligned_cols=47  Identities=13%  Similarity=-0.009  Sum_probs=39.7

Q ss_pred             HHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          196 KVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       196 ~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ...+.+.|++|||+|+ |.+|...+..+...|+ +|++++|+.++.+.+
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l  120 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESL  120 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            3456778999999998 9999999988888898 899999998877544

>PRK07831 short chain dehydrogenase; Provisional

Probab=92.90  E-value=0.32  Score=42.05  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=35.7

Q ss_pred             CCCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-G-AVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +.++++++|.|+ | ++|.+.++.+...|+ +|++++++.++++..
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   58 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGET   58 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            456789999987 6 799999999999999 899998888766544

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=92.84  E-value=0.35  Score=40.07  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=31.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|.|+|+|.+|...+.++-..|. +|..++.+++.++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~   38 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERA   38 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhh
Confidence            58899999999998888888899 999999999877654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06139 short chain dehydrogenase; Provisional

Probab=92.81  E-value=0.3  Score=44.37  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~   47 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAV   47 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5688999998 8999999998888999 899999998887644

>PRK07890 short chain dehydrogenase; Provisional

Probab=92.77  E-value=0.35  Score=41.51  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -++++++|.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~   45 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEV   45 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            35788999987 8999998888888999 899999888765544

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.75  E-value=0.36  Score=41.99  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .+++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~   48 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDA   48 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            35789999987 8999999988888999 89999988776543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.73  E-value=0.62  Score=41.08  Aligned_cols=43  Identities=23%  Similarity=0.132  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ..++++++|+|+|++|.+.+..+...|+ +|+++++++++.+.+
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~l  156 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEEL  156 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            3557899999999999998888888898 999999998776554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12828 short chain dehydrogenase; Provisional

Probab=92.73  E-value=0.33  Score=40.88  Aligned_cols=38  Identities=26%  Similarity=0.276  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +++++||+|+ |.+|...++.+...|+ +|++++++.++.
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~   44 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPL   44 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhH
Confidence            4789999987 9999999988888899 899999876553

>PRK07062 short chain dehydrogenase; Provisional

Probab=92.70  E-value=0.35  Score=41.84  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASA   48 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            5788999987 8999999988888899 899999988776544

>PRK06500 short chain dehydrogenase; Provisional

Probab=92.64  E-value=0.38  Score=40.96  Aligned_cols=46  Identities=24%  Similarity=0.318  Sum_probs=36.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~  248 (267)
                      ++++++|.|+ |.+|...++.+...|+ +|+++++++++.+.+ +++|.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~   52 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGE   52 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCC
Confidence            4678999987 9999999998888999 899999887665543 33443

>PRK07035 short chain dehydrogenase; Provisional

Probab=92.60  E-value=0.4  Score=41.13  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|.|+ |.+|.+.++.+...|+ +|+.++++.++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~   48 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAV   48 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999999998888899 999999887665443

>PRK06180 short chain dehydrogenase; Provisional

Probab=92.58  E-value=0.41  Score=41.92  Aligned_cols=43  Identities=19%  Similarity=0.114  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .++++||.|+ |.+|.+.++.+...|+ +|+++++++++++.+.+
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~   46 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEA   46 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHh
Confidence            3578999987 9999999988888899 89999998887766554

>PRK08703 short chain dehydrogenase; Provisional

Probab=92.58  E-value=0.37  Score=41.01  Aligned_cols=41  Identities=24%  Similarity=0.233  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|.|+ |++|...++.+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~   46 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKV   46 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHH
Confidence            4679999987 9999998888888899 899999988766544

>PRK07063 short chain dehydrogenase; Provisional

Probab=92.57  E-value=0.39  Score=41.46  Aligned_cols=41  Identities=20%  Similarity=0.253  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~   47 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERA   47 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 8999999988888899 899999888766554

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.51  E-value=0.41  Score=41.27  Aligned_cols=41  Identities=24%  Similarity=0.308  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...++.+...|+ +|++++++.++++.+
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~   52 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEA   52 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            5789999987 9999998888888899 899999988776544

>PRK07825 short chain dehydrogenase; Provisional

Probab=92.48  E-value=0.4  Score=41.72  Aligned_cols=41  Identities=27%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+.+++|.|+ |++|...+..+...|+ +|+++++++++++.+
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   45 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKET   45 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3678999997 8999998888888899 899999988877654

>PRK09072 short chain dehydrogenase; Provisional

Probab=92.48  E-value=0.4  Score=41.48  Aligned_cols=42  Identities=31%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   46 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALA   46 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            4678999987 9999998888888898 8999999887765543

>PRK08265 short chain dehydrogenase; Provisional

Probab=92.34  E-value=0.43  Score=41.39  Aligned_cols=45  Identities=24%  Similarity=0.289  Sum_probs=36.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  247 (267)
                      ++++++|.|+ +.+|...+..+...|+ +|++++++.++.+.+ ++++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   51 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG   51 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            5689999987 8999999988888999 999999988765544 3344

>PRK09291 short chain dehydrogenase; Provisional

Probab=92.32  E-value=0.43  Score=40.92  Aligned_cols=40  Identities=18%  Similarity=0.070  Sum_probs=33.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++||.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~   42 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTAL   42 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            457999987 9999999999988998 899998877655443

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.31  E-value=0.43  Score=39.59  Aligned_cols=49  Identities=20%  Similarity=0.176  Sum_probs=40.7

Q ss_pred             CCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          202 VGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .|..|++.|+| ++|...++-+...|+ +||++.|+++.+..+.+.-..+|
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p~~I   55 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETPSLI   55 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCCcce
Confidence            67889999985 999999988888999 99999999998888766544333

>PRK06194 hypothetical protein; Provisional

Probab=92.28  E-value=0.42  Score=41.86  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...+..+...|+ +|++++++.++++..
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRA   46 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999987 9999998888888899 899999887665443

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.25  E-value=0.44  Score=40.92  Aligned_cols=41  Identities=20%  Similarity=0.149  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +++|...+..+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~   46 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQL   46 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999998888888899 899999988776554

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.25  E-value=0.43  Score=42.86  Aligned_cols=41  Identities=24%  Similarity=0.231  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +++|.+.+..+...|+ +|++++|+.++.+.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~   54 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAA   54 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4789999987 8999998888877898 999999988766543

>PRK07677 short chain dehydrogenase; Provisional

Probab=92.24  E-value=0.43  Score=41.03  Aligned_cols=40  Identities=25%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ +++|...++.+...|+ +|++++++.++.+.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~   41 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEA   41 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999987 8999999998888999 899999888766544

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=92.19  E-value=0.62  Score=43.42  Aligned_cols=57  Identities=18%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       188 ~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ...+..+.+..+++++++||-+|+| .|..+..+++..|+ +|++++.+++.++.+++.
T Consensus       153 ~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~  209 (383)
T PRK11705        153 EAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQER  209 (383)
T ss_pred             HHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHH
Confidence            3444445677889999999999984 45667788888888 999999999999888763

>PRK06125 short chain dehydrogenase; Provisional

Probab=92.19  E-value=0.46  Score=41.02  Aligned_cols=41  Identities=24%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|.|+ +++|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEAL   47 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            4789999987 8999998888888899 999999988776553

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=92.19  E-value=0.35  Score=45.06  Aligned_cols=44  Identities=23%  Similarity=0.222  Sum_probs=38.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      .+|||+|+|.+|+.+++.+-..+-.+|++.+|+.++...+.+..
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~   45 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI   45 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc
Confidence            47999999999999999988788569999999999999887653

>PRK06841 short chain dehydrogenase; Provisional

Probab=92.16  E-value=0.57  Score=40.14  Aligned_cols=43  Identities=21%  Similarity=0.273  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +++++||.|+ |.+|...++.+...|+ +|++++++++..+...+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~   57 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQ   57 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            4789999997 9999998888888899 89999988765554444

>PRK06172 short chain dehydrogenase; Provisional

Probab=92.14  E-value=0.47  Score=40.70  Aligned_cols=40  Identities=23%  Similarity=0.181  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++++|.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~   46 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEE   46 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4689999987 8999998888877898 89999998766543

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=92.13  E-value=0.47  Score=40.56  Aligned_cols=44  Identities=18%  Similarity=0.152  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ...++++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~   52 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAV   52 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHH
Confidence            3557889999987 9999998888888899 999999987665443

>PRK07454 short chain dehydrogenase; Provisional

Probab=92.13  E-value=0.54  Score=39.98  Aligned_cols=42  Identities=17%  Similarity=0.050  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ...++++|.|+ |.+|...+..+...|. +|+++++++++.+.+
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   46 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEAL   46 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35678999987 9999999988888899 899999988766544

>PRK06101 short chain dehydrogenase; Provisional

Probab=92.11  E-value=0.44  Score=40.69  Aligned_cols=42  Identities=17%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .+++|.|+ |++|...+..+...|+ +|+++++++++++.+.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh
Confidence            46899987 9999988877777899 899999998887766543

>PRK06196 oxidoreductase; Provisional

Probab=92.10  E-value=0.45  Score=42.61  Aligned_cols=41  Identities=20%  Similarity=0.228  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|+|.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~   66 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREA   66 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999997 8999998888888899 899999988766543

>PRK09186 flagellin modification protein A; Provisional

Probab=92.03  E-value=0.48  Score=40.59  Aligned_cols=41  Identities=27%  Similarity=0.358  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~   44 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNEL   44 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHH
Confidence            5789999987 8999998888888899 899998888776544

>PRK12939 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.51  Score=40.14  Aligned_cols=42  Identities=19%  Similarity=0.049  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++++|+|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   47 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEAREL   47 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            35788999987 9999999988888899 888888887765543

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.96  E-value=0.51  Score=40.55  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   47 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAV   47 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHH
Confidence            4789999998 9999998888888899 889999888655443

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.89  E-value=0.53  Score=40.28  Aligned_cols=41  Identities=24%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   44 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAA   44 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            4678999987 9999998888888899 899999988766544

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=91.79  E-value=0.56  Score=40.29  Aligned_cols=41  Identities=32%  Similarity=0.444  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~   49 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELA   49 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            4778999987 8999998888888898 999999887765443

>PRK05875 short chain dehydrogenase; Provisional

Probab=91.75  E-value=0.55  Score=40.89  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +++++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~   46 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAA   46 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Confidence            4689999997 8999999999988999 89999988766543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=91.74  E-value=1.3  Score=39.52  Aligned_cols=44  Identities=27%  Similarity=0.422  Sum_probs=35.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..++++||-+|+|. |.+++.+++ .|+.+|+++|.++..++.+++
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~  200 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARK  200 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHH
Confidence            56789999999877 777777666 577799999999988777754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK09242 tropinone reductase; Provisional

Probab=91.73  E-value=0.57  Score=40.32  Aligned_cols=41  Identities=24%  Similarity=0.250  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   49 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQA   49 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            4789999987 8999999988888899 899999888776544

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.71  E-value=0.44  Score=37.73  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=34.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      |+|+|+|.+|...+..++..|. +|..+.+.+ +.+.+++.|..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~   42 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLT   42 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEE
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEE
Confidence            6899999999988877777888 899999877 77777776653

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=91.70  E-value=0.47  Score=38.57  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=32.6

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      |+|+|+ |.+|...++.+...|. +|+++.|++++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~   37 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED   37 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc
Confidence            789998 9999999999999997 99999999988764

...

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.68  E-value=0.69  Score=44.14  Aligned_cols=51  Identities=27%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-----hHHHHHHcCCCEEE
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-----KFEIGKKFGITDFI  252 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-----~~~~~~~~G~~~vi  252 (267)
                      ..+++|+|+|+|.+|+.++.+++..|+ +|.+++..+.     ..+.+++.|..-..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~   69 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRL   69 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEE
Confidence            356799999999999999999999999 8888885542     23445667765443

>PRK07109 short chain dehydrogenase; Provisional

Probab=91.67  E-value=0.55  Score=42.66  Aligned_cols=41  Identities=27%  Similarity=0.202  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|+|.|+ |++|...++.+...|+ +|+++++++++++.+
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~   48 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEAL   48 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999987 8999999988888999 899999988776544

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=91.65  E-value=0.59  Score=40.12  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++++|.|+ |.+|...+..+...|+ +|+++++++++++.
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~   50 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEA   50 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHH
Confidence            5789999987 8999998888777899 89999998766544

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=91.60  E-value=0.56  Score=42.11  Aligned_cols=41  Identities=29%  Similarity=0.213  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   46 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAA   46 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999987 9999998888887898 899999988776544

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=91.58  E-value=0.59  Score=40.22  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+.
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~   47 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAA   47 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH
Confidence            3678999987 9999998888888899 8999999888766544

>PRK08177 short chain dehydrogenase; Provisional

Probab=91.52  E-value=0.6  Score=39.41  Aligned_cols=42  Identities=14%  Similarity=0.167  Sum_probs=34.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ++++|.|+ |.+|...+..+...|+ +|+++++++++.+.++++
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~   44 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQAL   44 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhc
Confidence            46899987 9999998888888899 999999988776655544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=91.46  E-value=0.67  Score=38.75  Aligned_cols=48  Identities=19%  Similarity=0.310  Sum_probs=39.9

Q ss_pred             HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496          196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  244 (267)
                      ...++.++++||-+|+|. |..++.+++..+. .+|++++.+++.++.++
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~   82 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTR   82 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence            456789999999999987 8888899887643 48999999998888664

>PRK06181 short chain dehydrogenase; Provisional

Probab=91.40  E-value=0.61  Score=40.23  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +.++||.|+ |.+|...++.+...|+ +|+++++++++.+.
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~   40 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLAS   40 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            357999987 9999999988888898 89999998766543

>PRK06138 short chain dehydrogenase; Provisional

Probab=91.38  E-value=0.63  Score=39.71  Aligned_cols=41  Identities=22%  Similarity=0.234  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|.|+ |.+|...++.+...|+ +|++++++.++.+..
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~   45 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERV   45 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHH
Confidence            4678999987 9999998887777898 899998887665443

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=91.37  E-value=0.58  Score=39.94  Aligned_cols=41  Identities=24%  Similarity=0.336  Sum_probs=34.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+.
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~   42 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAA   42 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            357999997 9999999888888899 8999999887665543

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07774 short chain dehydrogenase; Provisional

Probab=91.33  E-value=0.68  Score=39.51  Aligned_cols=40  Identities=30%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .+++++|.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~   45 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAER   45 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            5678999987 9999998888888898 89999988765543

>PRK06197 short chain dehydrogenase; Provisional

Probab=91.33  E-value=0.55  Score=41.79  Aligned_cols=41  Identities=17%  Similarity=0.191  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ..+++|+|.|+ |++|...+..+...|+ +|++++++.++.+.
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~   55 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKA   55 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            36789999987 9999998888777898 89889888776543

>PRK08628 short chain dehydrogenase; Provisional

Probab=91.28  E-value=0.54  Score=40.42  Aligned_cols=41  Identities=15%  Similarity=0.064  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||+|+ |.+|...+..+...|+ +|+++++++++.+..
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   47 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFA   47 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHH
Confidence            4678999987 8999998888888899 788888887765443

>PRK05876 short chain dehydrogenase; Provisional

Probab=91.28  E-value=0.64  Score=40.82  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -+++++||.|+ |++|.+.+..+...|+ +|+++++++++++.+
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~   46 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQA   46 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35788999987 8999998888888899 888888887666543

>PRK08643 acetoin reductase; Validated

Probab=91.28  E-value=0.63  Score=39.95  Aligned_cols=40  Identities=23%  Similarity=0.272  Sum_probs=33.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ |.+|...++.+...|+ +|++++++.++.+.+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~   42 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAA   42 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            568899987 8999999888888899 899999887665443

>PLN00203 glutamyl-tRNA reductase

Probab=91.27  E-value=0.68  Score=44.91  Aligned_cols=44  Identities=16%  Similarity=0.279  Sum_probs=38.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+.+
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~  308 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE  308 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence            37899999999999999999999998889999999988776653

>PRK08264 short chain dehydrogenase; Validated

Probab=91.26  E-value=0.48  Score=40.14  Aligned_cols=40  Identities=25%  Similarity=0.342  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .+++++|+|+ |.+|...+..+...|+++|++++++.++.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVT   45 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhh
Confidence            4678999987 999999999888889878898988876654

>PRK05717 oxidoreductase; Validated

Probab=91.26  E-value=0.68  Score=39.84  Aligned_cols=40  Identities=18%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~   49 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSK   49 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHH
Confidence            4678999987 9999998888888898 89999877665444

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=91.21  E-value=0.62  Score=39.59  Aligned_cols=39  Identities=26%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .+.+|||.|+ |.+|...+..+...|+ +|++++++.++..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~   44 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAA   44 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4678999987 9999998888888898 8999998865543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=91.15  E-value=1.4  Score=41.34  Aligned_cols=54  Identities=26%  Similarity=0.247  Sum_probs=44.8

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCC
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGI  248 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~  248 (267)
                      .+..+--.+.++||+|+|-+|.+++..+...|..+|++.-|+.+|.+.+ +++|+
T Consensus       170 ~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~  224 (414)
T COG0373         170 KRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA  224 (414)
T ss_pred             HHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC
Confidence            3344445789999999999999999999999998999999999888765 56883

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=91.07  E-value=0.74  Score=39.19  Aligned_cols=41  Identities=27%  Similarity=0.217  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~   43 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKV   43 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            4688999987 9999999988888898 899998887765543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=91.05  E-value=0.74  Score=38.87  Aligned_cols=40  Identities=30%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++|||+|+ |.+|...+..+...|. +|+++++++++.+.
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~   44 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEA   44 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHH
Confidence            3578999998 9999999988888899 79999998876544

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.99  E-value=0.62  Score=45.50  Aligned_cols=48  Identities=15%  Similarity=0.272  Sum_probs=42.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++|.|.|.+|...++.++..|. +++++|.++++.+.+++.|...+.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~  465 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVL  465 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEE
Confidence            678999999999999999999998 999999999999999988865443

>PRK08267 short chain dehydrogenase; Provisional

Probab=90.98  E-value=0.67  Score=39.94  Aligned_cols=40  Identities=20%  Similarity=0.134  Sum_probs=34.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++||.|+ |.+|...+..+...|+ +|++++++.++++.+.
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   42 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALA   42 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Confidence            47899987 9999999988888898 9999999888776654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=90.95  E-value=0.64  Score=36.98  Aligned_cols=40  Identities=25%  Similarity=0.174  Sum_probs=30.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC--hhhHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN--PEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~--~~~~~~~  243 (267)
                      ++++|+|+ +++|...++.+...|..+|+.+.++  .++.+.+
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l   43 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQEL   43 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccc
Confidence            46899987 8999998877777777788999988  4444433

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08226 short chain dehydrogenase; Provisional

Probab=90.95  E-value=0.7  Score=39.86  Aligned_cols=41  Identities=29%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|+|+ |.+|...+..+...|+ +|++++++++..+..
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   46 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLA   46 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            5688999987 8999999988888899 899998887544333

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=90.93  E-value=0.74  Score=40.15  Aligned_cols=40  Identities=35%  Similarity=0.333  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++++|.|+ |++|.+.+..+...|+ +|++++++.++.+.
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~   49 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEA   49 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            5788999987 8999999988888899 89999988765543

>PRK12742 oxidoreductase; Provisional

Probab=90.90  E-value=0.78  Score=38.76  Aligned_cols=47  Identities=19%  Similarity=0.186  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH-HHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIG-KKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~-~~~G~~  249 (267)
                      ++++|||.|+ |.+|...++.+...|+ +|+.+.+ ++++.+.+ .+++..
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~   54 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGAT   54 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCe
Confidence            4789999987 9999999998888999 7777644 44444443 445543

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.85  E-value=0.72  Score=39.93  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEK  239 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~  239 (267)
                      +..+++|||.|+ |++|.+.++-+...| + +|+++++++++
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~   45 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDP   45 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcch
Confidence            567789999987 899999887766664 6 99999888765

>PRK07024 short chain dehydrogenase; Provisional

Probab=90.83  E-value=0.79  Score=39.51  Aligned_cols=40  Identities=20%  Similarity=0.103  Sum_probs=33.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +.+|+|.|+ |++|...+..+...|+ +|++++++.++++..
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~   42 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAF   42 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999987 9999998888888899 899999988776554

>PRK06914 short chain dehydrogenase; Provisional

Probab=90.82  E-value=0.76  Score=40.07  Aligned_cols=41  Identities=22%  Similarity=0.124  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~   43 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENL   43 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            3568999987 9999999988888899 899998887766544

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=90.66  E-value=0.78  Score=39.32  Aligned_cols=39  Identities=18%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++|.|+ |.+|.+.+..+...|+ +|+++++++++++.+.
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   41 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELK   41 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899987 9999999988888899 8999999887766553

>PRK08862 short chain dehydrogenase; Provisional

Probab=90.60  E-value=0.84  Score=38.98  Aligned_cols=41  Identities=15%  Similarity=0.075  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|.|+ +++|.+.+.-+...|+ +|+++++++++++.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~   45 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDT   45 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4688999987 7999998877777899 899999988876554

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=90.54  E-value=0.94  Score=37.00  Aligned_cols=47  Identities=28%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP-EKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~~~~~G~~  249 (267)
                      ++++|.|+|-|.-|.+.++-+|..|. +|++-.+.. ...+.+++-|+.
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vglr~~s~s~~~A~~~Gf~   50 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGV-NVIVGLREGSASWEKAKADGFE   50 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC--EEEEEE-TTCHHHHHHHHTT-E
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCC-CEEEEecCCCcCHHHHHHCCCe
Confidence            57899999999999999999999999 666554444 488888888875

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.51  E-value=0.77  Score=41.19  Aligned_cols=45  Identities=27%  Similarity=0.503  Sum_probs=39.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|.|.+|.+.+..++..|. .+|+++++++++.+.+++.|.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~   52 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL   52 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC
Confidence            679999999999998888887774 489999999999888888885

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=90.45  E-value=0.8  Score=39.40  Aligned_cols=37  Identities=27%  Similarity=0.318  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      +++++||.|+ |++|.+.++.+...|+ +|+++++++..
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~   44 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELV   44 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHH
Confidence            4678999987 8999998888888899 89999887543

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.42  E-value=0.75  Score=44.74  Aligned_cols=42  Identities=24%  Similarity=0.329  Sum_probs=36.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~~e~a~~la  419 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRTYERAKELA  419 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            46789999999999999999989999 9999999888776654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=90.42  E-value=0.87  Score=39.16  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=32.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++||.|+ |.+|...+..+...|+ +|+.++++.++.+.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~   42 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANV   42 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            468999987 8999998888888898 899999887655443

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.33  E-value=0.96  Score=38.36  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .+.+++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~   46 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKA   46 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4578999987 8999998888888899 89999998766544

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=90.30  E-value=0.93  Score=33.57  Aligned_cols=42  Identities=38%  Similarity=0.608  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      |+.+||-+|+|. |..+..+++ ..++ +|++++.+++-++.+++
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~   43 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARE   43 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHH
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHH
Confidence            678999998754 566666777 4677 99999999998888764

...

>PLN02253 xanthoxin dehydrogenase

Probab=90.26  E-value=0.92  Score=39.58  Aligned_cols=40  Identities=18%  Similarity=0.184  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |.+|.+.+..+...|+ +|++++++.++.+.
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~   57 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQN   57 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHH
Confidence            4678999987 8999998887777898 89999887665443

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.18  E-value=0.77  Score=43.60  Aligned_cols=47  Identities=43%  Similarity=0.564  Sum_probs=37.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+++|+|+|.|..|++++.+++.+|+ .|.+.|........+.+.|+.
T Consensus         8 ~~~~i~viG~G~~G~~~a~~l~~~G~-~v~~~D~~~~~~~~l~~~g~~   54 (460)
T PRK01390          8 AGKTVAVFGLGGSGLATARALVAGGA-EVIAWDDNPASRAKAAAAGIT   54 (460)
T ss_pred             CCCEEEEEeecHhHHHHHHHHHHCCC-EEEEECCChhhHHHHHhcCcc
Confidence            46789999999999999999999999 999999775544445555654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.16  E-value=0.22  Score=47.08  Aligned_cols=59  Identities=10%  Similarity=0.022  Sum_probs=43.7

Q ss_pred             HhCCCCCCEEE----EEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC-EEECCCC
Q 024496          197 VAGVEVGSTVA----IFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT-DFINPAT  256 (267)
Q Consensus       197 ~~~~~~g~~Vl----I~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~-~vi~~~~  256 (267)
                      ..++++|+++|    |+|+ |++|.+++++++..|+ +|+++.+.+.+....+..+.+ .++|.+.
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~   92 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG   92 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC
Confidence            45677888887    7765 9999999999999999 899887666544444445555 4666665

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=90.12  E-value=1.4  Score=37.48  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~   39 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE   39 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch
Confidence            5789999997 8999998888888899 899888765

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=90.09  E-value=1.9  Score=36.88  Aligned_cols=48  Identities=27%  Similarity=0.300  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh----------hhHHHHHHcC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP----------EKFEIGKKFG  247 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~----------~~~~~~~~~G  247 (267)
                      --.|.+|+|.|-|.+|..+++++..+|+..|.++|.+.          +.++..++.+
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~   77 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALG   77 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhC
Confidence            34688999999999999999999999996666778777          6666665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07074 short chain dehydrogenase; Provisional

Probab=90.07  E-value=1  Score=38.69  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=33.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ |.+|...+..+...|+ +|++++++.++.+.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~   42 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAF   42 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999987 8999998887777898 899999988776544

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=90.07  E-value=0.67  Score=42.94  Aligned_cols=49  Identities=22%  Similarity=0.330  Sum_probs=38.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh--------------hhHHHHHHcCC-CEEEC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP--------------EKFEIGKKFGI-TDFIN  253 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~--------------~~~~~~~~~G~-~~vi~  253 (267)
                      ..|+|+|+|++|++++.+++..|. +|.++++.+              ..++.++++|. +.+..
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~-~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~   66 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGL-DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEA   66 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhh
Confidence            468999999999999999999998 888888762              24566677887 55543

>PRK08589 short chain dehydrogenase; Validated

Probab=90.03  E-value=0.96  Score=39.46  Aligned_cols=35  Identities=26%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++++||.|+ +++|.+.+..+...|+ +|+++++++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~   40 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE   40 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH
Confidence            5789999987 8999998888888899 899998883

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=90.02  E-value=0.93  Score=39.04  Aligned_cols=34  Identities=21%  Similarity=0.122  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++++||.|+ +.+|.+.++.+...|+ +|++++++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~   48 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG   48 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999987 8999999988888899 88888776

>PRK06198 short chain dehydrogenase; Provisional

Probab=89.99  E-value=1.1  Score=38.46  Aligned_cols=41  Identities=24%  Similarity=0.188  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      -.+++++|.|+ |.+|...++.+...|++.|++++++.++.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~   45 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGE   45 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHH
Confidence            45788999997 899999999988899944999998876554

>PRK07102 short chain dehydrogenase; Provisional

Probab=89.99  E-value=0.93  Score=38.61  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=32.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++|.|+ |++|...+..+...|+ +|+++++++++.+..
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~   41 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERL   41 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHH
Confidence            47899987 9999998888888898 899999988766543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=89.94  E-value=0.76  Score=39.50  Aligned_cols=44  Identities=23%  Similarity=0.305  Sum_probs=37.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH--HcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK--KFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~--~~G~~  249 (267)
                      +++|+|+|.+|...++.+...|. .|++++.++++.+...  +++..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~   47 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH   47 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE
Confidence            68899999999999999999999 9999999999987733  35544

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.92  E-value=1.1  Score=42.77  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=38.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCCE
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGITD  250 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~~  250 (267)
                      -.+++|+|+|.|..|++++.+++..|+ .|.+.|++..+... +.++|...
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~~   62 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDNETARHKLIEVTGVAD   62 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCChHHHHHHHHhcCcEE
Confidence            345689999999999999999999999 99999987655433 35567643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=89.90  E-value=0.83  Score=32.15  Aligned_cols=32  Identities=19%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|.+|+-.+..+..+|. +|..+.+.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccc
Confidence            58899999999999999999998 888887655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.90  E-value=1  Score=42.39  Aligned_cols=47  Identities=23%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh----hHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE----KFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~----~~~~~~~~G~~  249 (267)
                      .+++++|+|.|.+|++++.++...|+ +|++.+.+.+    ..+.+.+.|..
T Consensus         4 ~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g~~   54 (447)
T PRK02472          4 QNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEGIK   54 (447)
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcCCE
Confidence            46789999998899999999999999 8999986542    22334555654

>PRK08251 short chain dehydrogenase; Provisional

Probab=89.88  E-value=1  Score=38.31  Aligned_cols=40  Identities=13%  Similarity=0.130  Sum_probs=32.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~   42 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEEL   42 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            467999987 9999988877777888 899988888776544

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=89.79  E-value=1.1  Score=38.53  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|||.|+ +.+|...+..+...|+ ++++++++.++.+.+
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~   51 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHV   51 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            4789999987 8999998888888899 888888877665443

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=89.75  E-value=0.94  Score=44.93  Aligned_cols=48  Identities=29%  Similarity=0.430  Sum_probs=42.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .++|+|.|.|.+|+..++.++..|. +++++|.++++.+.+++.|...+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~  447 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVF  447 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEE
Confidence            3579999999999999999999998 89999999999999999887533

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.74  E-value=1  Score=39.95  Aligned_cols=43  Identities=19%  Similarity=0.251  Sum_probs=35.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|+|+|+|.+|.+.+..+...|. +|..+++++++.+.+++.|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~   44 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGL   44 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCC
Confidence            68999999999988777777787 89999988888777776664

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.64  E-value=2.2  Score=36.28  Aligned_cols=69  Identities=20%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH----HHHcCCCEE
Q 024496          178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI----GKKFGITDF  251 (267)
Q Consensus       178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~----~~~~G~~~v  251 (267)
                      .....+.-+...|.  +.....++++++||=+|.| .|..++.+|+..+  +|+.+++.++-.+.    ++++|.+.|
T Consensus        50 ~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtG-sGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV  122 (209)
T COG2518          50 GCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTG-SGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENV  122 (209)
T ss_pred             CCCceecCcHHHHH--HHHHhCCCCCCeEEEECCC-chHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCce
Confidence            33334444444443  4677899999999999874 4888999999876  89999998874444    456787433

>PRK07832 short chain dehydrogenase; Provisional

Probab=89.61  E-value=1  Score=39.16  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=31.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++|+|+ |++|...++.+...|+ +|+++++++++++..
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~   40 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQT   40 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            6899987 8999999888888898 888898887765443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.57  E-value=1  Score=40.07  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++++.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHH
Confidence            579999999999998888888898 899999999887643

>PRK06953 short chain dehydrogenase; Provisional

Probab=89.44  E-value=1.2  Score=37.50  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      ++++|+|+ |.+|...++.+...|+ +|+++++++++.+.++..+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~   46 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGA   46 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccc
Confidence            46889987 9999998887777898 89999998887776665553

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=89.40  E-value=0.86  Score=37.97  Aligned_cols=40  Identities=40%  Similarity=0.617  Sum_probs=31.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +|.|+|.|-+|+-.+..+-..|. +|+++|.++++.+.+.+
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~   41 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN   41 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred             EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence            68899999999888777777898 99999999999988754

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=89.26  E-value=1.2  Score=38.49  Aligned_cols=41  Identities=32%  Similarity=0.370  Sum_probs=33.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++++|.|+ +.+|...+..+...|+ +|+++++++++.+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~   50 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKG   50 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            5678999987 8999988887778899 788888888766543

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=89.24  E-value=1  Score=39.46  Aligned_cols=36  Identities=14%  Similarity=0.164  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +++++||.|++   ++|.+.++.+...|+ +|++++++++
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~   44 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEA   44 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchH
Confidence            57889999974   899998888888999 8888887653

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=89.19  E-value=1.8  Score=32.45  Aligned_cols=49  Identities=22%  Similarity=0.356  Sum_probs=38.5

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .....+.++++|+-+|+|. |..+..+++..+..+|+++|.++...+.++
T Consensus        12 ~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~   60 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIE   60 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHH
Confidence            3445677788999999866 788888888765459999999998887764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.12  E-value=1.1  Score=39.86  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=34.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++++.+.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~   41 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQ   41 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHH
Confidence            479999999999998888877898 8999999998877753

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=89.12  E-value=0.8  Score=40.62  Aligned_cols=49  Identities=20%  Similarity=0.281  Sum_probs=34.1

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +.+.+++++|++||-+|+| -|-.+..+|+..|+ +|.+++.+++..+.++
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~  102 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYAR  102 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHH
Confidence            5678899999999999986 45566678887799 9999999998887764

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=89.10  E-value=1.1  Score=38.58  Aligned_cols=38  Identities=21%  Similarity=0.249  Sum_probs=31.6

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   40 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKA   40 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            6899987 8999998888888899 899999988765443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.01  E-value=1.1  Score=44.29  Aligned_cols=47  Identities=19%  Similarity=0.370  Sum_probs=42.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ++|+|.|.|.+|+..++.++..|. .++++|.++++.+.+++.|...+
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~  447 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVY  447 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEE
Confidence            578999999999999999998899 99999999999999999886543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.97  E-value=1.1  Score=38.79  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      +++++||.|++   ++|.+.++.+...|+ +|++++++++.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~   48 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA   48 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh
Confidence            57889999863   899998888888899 88888887543

>PRK06482 short chain dehydrogenase; Provisional

Probab=88.89  E-value=1.3  Score=38.51  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++||.|+ |.+|...+..+...|. +|+++.+++++++.++
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~   43 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLK   43 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            57999987 9999998888877898 8999999887766554

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=88.83  E-value=2.6  Score=39.40  Aligned_cols=58  Identities=28%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             hhhhhcchhhhhHHHHHHHHhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          178 GIACLLSCGVSTGVGAAWKVAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       178 ~~aa~l~~~~~ta~~a~~~~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+|....+.+++-  .+....+. -+|.+|.|.|.|.+|..+++.+..+|+ +|++++-+..
T Consensus       183 ~~aTg~Gv~~~~~--~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GA-kvva~sds~g  241 (411)
T COG0334         183 SEATGYGVFYAIR--EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGA-KVVAVSDSKG  241 (411)
T ss_pred             CcccceehHHHHH--HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCC-EEEEEEcCCC
Confidence            3444445444333  23444554 599999999999999999999998899 7777765554

>CHL00194 ycf39 Ycf39; Provisional

Probab=88.79  E-value=1.3  Score=39.70  Aligned_cols=38  Identities=16%  Similarity=0.156  Sum_probs=31.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+|+|+ |.+|...+..+...|. +|.+++|+.++...+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l   40 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFL   40 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhH
Confidence            6999997 9999999988888898 899998886654433

>PRK08263 short chain dehydrogenase; Provisional

Probab=88.78  E-value=1.3  Score=38.52  Aligned_cols=41  Identities=15%  Similarity=0.076  Sum_probs=33.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++|||.|+ |.+|...+..+...|+ +|+++++++++++.+.
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~   44 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLA   44 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            468999987 9999998888877898 8999999887765544

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=88.71  E-value=2.7  Score=35.07  Aligned_cols=61  Identities=18%  Similarity=0.320  Sum_probs=43.3

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH----HcCCC--EEECCCC
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK----KFGIT--DFINPAT  256 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~----~~G~~--~vi~~~~  256 (267)
                      +....+++|+.++=+|+|. |..++++++..-..+||+++++++++++.+    +||.+  +++..+.
T Consensus        27 ls~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~A   93 (187)
T COG2242          27 LSKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDA   93 (187)
T ss_pred             HHhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccc
Confidence            3456789999877777742 555668886555559999999999998875    58876  4444444

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=88.65  E-value=1.5  Score=37.05  Aligned_cols=41  Identities=22%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++.++||.|+ |.+|...+..+...|+ .|+..+++.++++.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~   46 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEAL   46 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4679999987 9999998888888898 888888877766554

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=88.64  E-value=1.4  Score=39.06  Aligned_cols=43  Identities=21%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.|+.+||.|+ .++|.+.+..+-..|+ +|+++++++++.+..+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~   49 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETA   49 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46788899987 7999998888888999 9999999998876653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.59  E-value=1.5  Score=35.31  Aligned_cols=41  Identities=22%  Similarity=0.172  Sum_probs=36.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +|.|+|+|..|.+.+..+...|. +|....++++..+.+++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~   41 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINET   41 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHh
Confidence            58899999999999999999997 999999999888877653

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=88.57  E-value=2.2  Score=40.63  Aligned_cols=36  Identities=28%  Similarity=0.224  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKII-GVDIN  236 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi-~~~~~  236 (267)
                      --+|.+|+|.|.|.||..+++.+..+|+ +|+ +.|.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~Ga-kVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGA-KVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEEcCC
Confidence            3478999999999999999999999999 777 56666

>PRK06484 short chain dehydrogenase; Validated

Probab=88.54  E-value=1.3  Score=42.45  Aligned_cols=47  Identities=26%  Similarity=0.243  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~  248 (267)
                      ..++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+ ++.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~  315 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGD  315 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            35788999987 8999998888888899 99999998887776653 443

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=88.51  E-value=1.4  Score=44.07  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=31.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+++|+|+|+|+.|+.++..+..+|. +|++++.++
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            357899999999999999999999999 788887654

>PRK07856 short chain dehydrogenase; Provisional

Probab=88.50  E-value=1  Score=38.61  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .+++++|.|+ |++|...++.+...|+ +|++++++.++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~   42 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            5789999987 8999998888888898 88888887643

>PRK13984 putative oxidoreductase; Provisional

Probab=88.49  E-value=1.5  Score=43.19  Aligned_cols=36  Identities=22%  Similarity=0.137  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+.+++|+|+|+|+.|++++..++.+|. +|.++++.
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~  315 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESL  315 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            4578899999999999999999999999 78888654

>PRK05884 short chain dehydrogenase; Provisional

Probab=88.38  E-value=1.4  Score=37.42  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=32.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++|.|+ |.+|.+.++.+...|+ +|+++++++++++.+
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~   40 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVA   40 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5889987 8999998888888898 899999888776654

>PRK06940 short chain dehydrogenase; Provisional

Probab=88.37  E-value=1.4  Score=38.64  Aligned_cols=39  Identities=28%  Similarity=0.461  Sum_probs=30.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++.++|.|+|++|.+.+..+. .|+ +|+++++++++++.+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~   40 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAA   40 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence            356788898999999888774 788 899999987766543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=88.24  E-value=1.4  Score=38.93  Aligned_cols=43  Identities=23%  Similarity=0.337  Sum_probs=37.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~   44 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGL   44 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCC
Confidence            68899999999888887777787 89999999999988887774

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.17  E-value=0.8  Score=40.83  Aligned_cols=33  Identities=30%  Similarity=0.424  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|+|+|+|+.|++++.++...|. +|.++++.+.
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~-~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGI-DVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhccc-ccccchhccc
Confidence            58999999999999999999999 8999987653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.16  E-value=1.5  Score=39.00  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHH
Confidence            479999999999988888777788 8999999988766553

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=88.09  E-value=1.6  Score=36.84  Aligned_cols=40  Identities=33%  Similarity=0.375  Sum_probs=31.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      ++++||.|+ |.+|...+..+...|+ +|+++ +++.++.+.+
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~   46 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQEL   46 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            468999987 9999998887777898 78887 8877665443

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=88.08  E-value=3.3  Score=37.27  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             HHHhCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEE--cCChhhHHHHHHcCCCEEECCCC
Q 024496          195 WKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGV--DINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .....+++|++| |=+ +|..|.+.+.+++.+|++-+++.  .-+.+|+++++.+|+.-++.+..
T Consensus        54 e~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~  117 (300)
T COG0031          54 EKRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGA  117 (300)
T ss_pred             HHcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCC
Confidence            445669999953 445 58999999999999999544444  34568999999999998877664

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=88.08  E-value=1.5  Score=37.85  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .+++++|.|++   ++|.+.++.+...|+ +|++++++++..+.++++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~   52 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKL   52 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhh
Confidence            57889999874   899998888878899 899888875434444443

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=88.05  E-value=3.2  Score=29.93  Aligned_cols=44  Identities=27%  Similarity=0.442  Sum_probs=35.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC---CCeEE-EEcCChhhHHHHH-HcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNR---ASKII-GVDINPEKFEIGK-KFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g---~~~vi-~~~~~~~~~~~~~-~~G~~  249 (267)
                      +|.|+|.|.+|.+.+.-+...|   . +|+ ++.+++++.+.++ +++..
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~   49 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQ   49 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhccc
Confidence            5788899999999888888888   5 777 4499999988874 56644

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07806 short chain dehydrogenase; Provisional

Probab=88.00  E-value=1.5  Score=37.26  Aligned_cols=35  Identities=17%  Similarity=0.094  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++++||.|+ |.+|...+..+...|+ +|+++.++.
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~   40 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQK   40 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4678999997 9999999888888898 888887764

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=87.93  E-value=1.4  Score=37.93  Aligned_cols=40  Identities=18%  Similarity=0.109  Sum_probs=32.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ...+|||+|+ |.+|...+..+...|. +|+++.|+.++...
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~   56 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKT   56 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHH
Confidence            4578999997 9999999888887888 88888887766543

>PRK07775 short chain dehydrogenase; Provisional

Probab=87.91  E-value=1.7  Score=37.88  Aligned_cols=40  Identities=18%  Similarity=0.018  Sum_probs=32.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +..+++|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~   49 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEE   49 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4468999987 9999999988888899 88888887765543

>PRK06523 short chain dehydrogenase; Provisional

Probab=87.87  E-value=1.1  Score=38.60  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++++||.|+ |++|...++.+...|+ +|++++++.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence            5789999987 8999998888888899 888888764

>PRK06720 hypothetical protein; Provisional

Probab=87.81  E-value=2.1  Score=35.04  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .++.++|.|+ +++|...+..+...|+ +|++++++.+..+
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~   54 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQ   54 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence            5778999987 7899998887777898 8999998876553

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=87.78  E-value=1.6  Score=39.59  Aligned_cols=41  Identities=15%  Similarity=0.064  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      -..+.+|||.|+ |.+|...++.+...|. +|++++++.++.+
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~   48 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSL   48 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence            356779999987 9999999998888898 8888877765443

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=87.67  E-value=1.2  Score=38.95  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=33.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ...+-.+++|+|+|.++...+++|+.+|+ +|.++|..++
T Consensus        96 ~~~p~~~L~IfGaG~va~~la~la~~lGf-~V~v~D~R~~  134 (246)
T TIGR02964        96 EAPPAPHVVLFGAGHVGRALVRALAPLPC-RVTWVDSREA  134 (246)
T ss_pred             ccCCCCEEEEECCcHHHHHHHHHHhcCCC-EEEEEeCCcc
Confidence            35677899999999999999999999999 8888875543

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=87.62  E-value=0.69  Score=34.55  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+.+|||+|+|.+|..-++.+...|+ +|.++..+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~   40 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI   40 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch
Confidence            57899999999999999999999998 888888664

>PRK08303 short chain dehydrogenase; Provisional

Probab=87.60  E-value=1.5  Score=39.21  Aligned_cols=34  Identities=15%  Similarity=0.126  Sum_probs=29.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+++++|.|+ +++|.+.++.+...|+ +|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999987 8999999988888999 88888876

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=87.57  E-value=1.9  Score=37.26  Aligned_cols=40  Identities=23%  Similarity=0.128  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFE  241 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~  241 (267)
                      -+++++||.|+ +++|.+.+..+...|+ +|+.+. +++++.+
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~   47 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEAN   47 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            35789999987 8999998888888999 777764 4454443

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=87.56  E-value=0.87  Score=42.83  Aligned_cols=48  Identities=27%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc--CCCEEEC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF--GITDFIN  253 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~--G~~~vi~  253 (267)
                      .|+|+|+|+.|++++..|...|+ +|++++++++--+.+.-.  |-.-+-|
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~-~V~vlE~~~~~gkKil~tG~GrCN~tn   51 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGA-RVLVLERNKRVGKKILITGNGRCNLTN   51 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT---EEEE-SSSSS-HHHHHCGGGT-EEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCcccccceeecCCCCccccc
Confidence            37899999999999999988999 999999987655555443  3344444

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=87.54  E-value=2.2  Score=40.75  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..+.+|+|+|+|+.|+.++..+...|. +|+++++.
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            457899999999999999999999999 78888754

>PRK06398 aldose dehydrogenase; Validated

Probab=87.54  E-value=1.1  Score=38.70  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~   40 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKE   40 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc
Confidence            4689999987 8999999988888898 888877654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=87.42  E-value=2  Score=34.68  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=37.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.++|.|.+|...+.-+...|+ +|.+.++++++.+.+.+.|+.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~   46 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAE   46 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEE
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhh
Confidence            368899999999988888888899 999999999999998887754

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=87.35  E-value=1.6  Score=41.02  Aligned_cols=39  Identities=31%  Similarity=0.495  Sum_probs=32.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .+++++|.|+ |++|.+.+..+...|+ +|+++++++++++
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~  216 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKIT  216 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            4789999987 9999998888888899 8998888776654

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=87.33  E-value=4  Score=36.42  Aligned_cols=59  Identities=12%  Similarity=0.017  Sum_probs=42.3

Q ss_pred             HHHhC-CCCCCEEEEEcCCH-HHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          195 WKVAG-VEVGSTVAIFGLGA-VGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       195 ~~~~~-~~~g~~VlI~G~g~-vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++..+ --.|++|+|+|.|. +|...+.++...|+ +|.++.+....+.... ..+|-+|+..
T Consensus       150 L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t~~L~~~~-~~aDIvI~At  210 (283)
T PRK14192        150 LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRTQNLPELV-KQADIIVGAV  210 (283)
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCchhHHHHh-ccCCEEEEcc
Confidence            33444 46789999999976 99999999999999 8888876433222211 3678777765

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=87.33  E-value=2.7  Score=36.16  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~   42 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAE   42 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCch
Confidence            5789999987 8999999988888999 888887654

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=87.29  E-value=1.7  Score=39.59  Aligned_cols=48  Identities=29%  Similarity=0.372  Sum_probs=39.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .-.|++|.|+|-|.+|.+.++.++..|. +|++.++.....+.+.+.|+
T Consensus        13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~   60 (335)
T PRK13403         13 LLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGF   60 (335)
T ss_pred             hhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCC
Confidence            4578999999999999999999999999 88777665555556666666

>PRK06484 short chain dehydrogenase; Validated

Probab=87.29  E-value=1.6  Score=41.91  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=36.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|++++++.++++.+. ++|
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   50 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG   50 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            5788999987 8999999998888999 9999998888765543 454

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.22  E-value=1.7  Score=37.73  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=28.7

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.++.++|.|+ +  ++|.+.++.+...|+ +|+.+++++
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~   44 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE   44 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch
Confidence            35788999987 4  799998877777899 888888764

>PRK12367 short chain dehydrogenase; Provisional

Probab=87.19  E-value=2  Score=37.20  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++++|.|+ |++|.+.++.+...|+ +|+++++++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            3678999987 8999998888888899 898888775

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=87.14  E-value=3.3  Score=29.61  Aligned_cols=35  Identities=29%  Similarity=0.363  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      -++++++|+|.|.+|...++.+...+..++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999886658888876

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=87.14  E-value=5.3  Score=35.97  Aligned_cols=46  Identities=33%  Similarity=0.530  Sum_probs=34.2

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .-++++++||=+|.| .|.+++..++ +|+.+|+++|..+-..+.+++
T Consensus       158 ~~~~~g~~vlDvGcG-SGILaIAa~k-LGA~~v~g~DiDp~AV~aa~e  203 (300)
T COG2264         158 KLLKKGKTVLDVGCG-SGILAIAAAK-LGAKKVVGVDIDPQAVEAARE  203 (300)
T ss_pred             HhhcCCCEEEEecCC-hhHHHHHHHH-cCCceEEEecCCHHHHHHHHH
Confidence            346688898877764 3666666666 699899999999977766654

>PRK07791 short chain dehydrogenase; Provisional

Probab=87.13  E-value=2.1  Score=37.80  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus         3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            346789999987 8999998888777899 888877654

>PRK07574 formate dehydrogenase; Provisional

Probab=87.13  E-value=1.6  Score=40.66  Aligned_cols=45  Identities=31%  Similarity=0.380  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++....+..+++|
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g  235 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELG  235 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcC
Confidence            56899999999999999999999999 9999998763333333444

>PRK06179 short chain dehydrogenase; Provisional

Probab=87.11  E-value=1.3  Score=38.40  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .+++++|.|+ |.+|...+..+...|+ +|++++++.++.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~   41 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARA   41 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc
Confidence            3568999987 9999998888888898 899998876544

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=87.08  E-value=0.63  Score=36.84  Aligned_cols=32  Identities=41%  Similarity=0.488  Sum_probs=26.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++|+|+|.++.+.+++++.+|+ +|.+++..++
T Consensus         1 L~I~GaG~va~al~~la~~lg~-~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGF-RVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTE-EEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCC-EEEEEcCCcc
Confidence            4678999999999999999999 8888876655

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.04  E-value=1.8  Score=36.79  Aligned_cols=39  Identities=18%  Similarity=0.113  Sum_probs=30.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~  241 (267)
                      ++++++|.|+ |.+|...+..+...|+ +|++ ..++.++.+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~   43 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAE   43 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            4678999987 8999999988888898 6655 466665543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=87.03  E-value=1.6  Score=38.77  Aligned_cols=42  Identities=19%  Similarity=0.235  Sum_probs=33.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|+|+|+|.+|.+.+..+...|. +|..+++ +++.+.+++.|.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r-~~~~~~~~~~g~   43 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR-PKRAKALRERGL   43 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec-HHHHHHHHhCCe
Confidence            68999999999987777766787 8888888 777777776553

>PRK06753 hypothetical protein; Provisional

Probab=87.00  E-value=0.98  Score=41.23  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~-~v~v~E~~~   33 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGH-EVKVFEKNE   33 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            68999999999999988888899 788887654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=86.97  E-value=1.7  Score=41.31  Aligned_cols=50  Identities=18%  Similarity=0.239  Sum_probs=38.6

Q ss_pred             CCCCCCEEEEEcCCHHHHH-HHHHHHHcCCCeEEEEcCChh-hHHHHHHcCCC
Q 024496          199 GVEVGSTVAIFGLGAVGLA-VAEGARLNRASKIIGVDINPE-KFEIGKKFGIT  249 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~-a~~la~~~g~~~vi~~~~~~~-~~~~~~~~G~~  249 (267)
                      +..++++|+|+|.|..|++ ++.+++..|+ +|.+.|.... ..+.+++.|..
T Consensus         3 ~~~~~~~v~viG~G~sG~s~~a~~L~~~G~-~V~~~D~~~~~~~~~l~~~gi~   54 (461)
T PRK00421          3 ELRRIKRIHFVGIGGIGMSGLAEVLLNLGY-KVSGSDLKESAVTQRLLELGAI   54 (461)
T ss_pred             CcCCCCEEEEEEEchhhHHHHHHHHHhCCC-eEEEECCCCChHHHHHHHCCCE
Confidence            4566789999999999999 5999999999 9999996543 23335555654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=86.89  E-value=2.1  Score=41.11  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=30.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..+++|+|+|+|+.|+.++..++..|. +|.+++..
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~-~V~v~e~~  175 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGH-TVTVFERE  175 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEecC
Confidence            356899999999999999999999998 78877644

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PLN02686 cinnamoyl-CoA reductase

Probab=86.88  E-value=1.8  Score=39.78  Aligned_cols=45  Identities=16%  Similarity=0.026  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ...+++|||.|+ |.+|...+..+...|+ +|+++.++.++.+.+++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~-~V~~~~r~~~~~~~l~~   95 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY-SVRIAVDTQEDKEKLRE   95 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            455789999987 9999999998888899 88877666655544433

>PLN03139 formate dehydrogenase; Provisional

Probab=86.81  E-value=1.6  Score=40.78  Aligned_cols=46  Identities=22%  Similarity=0.248  Sum_probs=37.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++....+...+.|+
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence            67899999999999999999999999 89999887544444444453

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=86.76  E-value=1.6  Score=38.98  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .|++|||.|+ |.+|...+..+...|. +|+++.++.++
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            4789999987 9999998888888898 88877766554

>PRK05650 short chain dehydrogenase; Provisional

Probab=86.74  E-value=1.9  Score=37.34  Aligned_cols=37  Identities=27%  Similarity=0.187  Sum_probs=30.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +|+|.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~   39 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEE   39 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            6899987 9999998888877899 89998888776553

>PRK06114 short chain dehydrogenase; Provisional

Probab=86.72  E-value=2.9  Score=35.87  Aligned_cols=35  Identities=20%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++++||.|+ +++|.+.++.+...|+ +|++++++.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~   42 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRT   42 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5778999987 8999999998888999 888888764

>PRK09135 pteridine reductase; Provisional

Probab=86.65  E-value=2.4  Score=35.90  Aligned_cols=34  Identities=15%  Similarity=0.052  Sum_probs=29.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~   39 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHR   39 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4578999997 9999998888888899 88888875

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.60  E-value=1.4  Score=40.75  Aligned_cols=32  Identities=28%  Similarity=0.371  Sum_probs=27.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|++|++++..+...|. +|.++++.+
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          4 DLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             cEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            58999999999998877777898 899888654

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=86.60  E-value=1.4  Score=38.11  Aligned_cols=44  Identities=25%  Similarity=0.291  Sum_probs=38.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..+=..|.|+|+|..|...+|++...|. .|..++.+++.+..++
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~-~V~l~d~~~~aL~~A~   51 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGL-NVWLVDANEDALSRAT   51 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCC-ceEEecCCHHHHHHHH
Confidence            3444679999999999999999999999 9999999998887764

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=86.58  E-value=3.5  Score=39.58  Aligned_cols=42  Identities=21%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+.+++|+|+|++|.+++..+...|+ ++++++++.++.+.+.
T Consensus       331 ~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la  372 (477)
T PRK09310        331 NNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRTKAHAEALA  372 (477)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            56789999999999999998888999 8999999888776553

>PLN02928 oxidoreductase family protein

Probab=86.52  E-value=1.4  Score=40.40  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|++|.|+|.|.+|...++.++.+|. +|++++++.
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~  192 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW  192 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC
Confidence            357899999999999999999999999 999998763

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.49  E-value=2.1  Score=38.96  Aligned_cols=38  Identities=21%  Similarity=0.240  Sum_probs=33.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++|.|+|+|.+|...++.+...|. +|.+.+++++.++.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~   45 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAA   45 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHH
Confidence            579999999999998888888899 99999998876554

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=86.43  E-value=2  Score=40.40  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=38.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      +|+|+|+|.+|...++.+...|. .|+++++++++.+.+++ +|..
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~~~~~   46 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDRLDVR   46 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcCEE
Confidence            68999999999999999998898 89999999998888765 6644

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=86.38  E-value=3.6  Score=34.84  Aligned_cols=35  Identities=23%  Similarity=0.153  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|++|||+|+|.+|..-+..+...|+ +|.+++.+.
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            47899999999999999999999999 888886543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=86.33  E-value=1.9  Score=34.94  Aligned_cols=44  Identities=25%  Similarity=0.232  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      -.|.+|+|+|+|.+|.--++.+...|+ +|.+++  ++..+.+++++
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~   54 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELP   54 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhcc
Confidence            367899999999999988888877899 777774  33334444444

>PRK06847 hypothetical protein; Provisional

Probab=86.32  E-value=1.2  Score=40.71  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~-~v~v~E~~~   37 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGI-AVDLVEIDP   37 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            4579999999999999999988899 888887654

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=86.31  E-value=2.2  Score=38.27  Aligned_cols=40  Identities=25%  Similarity=0.145  Sum_probs=32.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ +++|.+.+..+...| + +|+++++++++.+.+
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~-~V~l~~r~~~~~~~~   44 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEW-HVIMACRDFLKAEQA   44 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCC-EEEEEeCCHHHHHHH
Confidence            568999988 899999888777789 6 899999888776544

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.31  E-value=2.5  Score=40.18  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-----hHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-----KFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-----~~~~~~~~G~~  249 (267)
                      ..+++|+|+|.|..|++++.+++..|+ .|.+.|.++.     ..+.+++.|..
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~   64 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKSEEELGEVSNELKELGVK   64 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCCCccchHHHHHHHhCCCE
Confidence            346799999999999999999999999 9999997642     12335556654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.31  E-value=2.2  Score=37.94  Aligned_cols=39  Identities=23%  Similarity=0.465  Sum_probs=33.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++++.+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~   43 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAG   43 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Confidence            579999999999988888887888 999999998877664

>PRK14967 putative methyltransferase; Provisional

Probab=86.29  E-value=2.9  Score=35.56  Aligned_cols=48  Identities=21%  Similarity=0.271  Sum_probs=37.7

Q ss_pred             HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ....++++++||-+|+|. |..++.+++. ++.+|++++.+++.++.+++
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~   77 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARL   77 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHH
Confidence            345678899999999986 8888888875 55699999999988876543

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=86.23  E-value=2.6  Score=37.91  Aligned_cols=44  Identities=30%  Similarity=0.499  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..+|++||=+|.| .|.+++..++ +|+++|+++|.++...+.+++
T Consensus       159 ~~~g~~vLDvG~G-SGILaiaA~k-lGA~~v~a~DiDp~Av~~a~~  202 (295)
T PF06325_consen  159 VKPGKRVLDVGCG-SGILAIAAAK-LGAKKVVAIDIDPLAVEAARE  202 (295)
T ss_dssp             SSTTSEEEEES-T-TSHHHHHHHH-TTBSEEEEEESSCHHHHHHHH
T ss_pred             ccCCCEEEEeCCc-HHHHHHHHHH-cCCCeEEEecCCHHHHHHHHH
Confidence            7788898877753 2444444455 599899999999987777654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=86.23  E-value=2.1  Score=38.27  Aligned_cols=41  Identities=20%  Similarity=0.321  Sum_probs=34.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++++.+++
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~   45 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARG   45 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHH
Confidence            579999999999988887777888 89999999888776543

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=86.11  E-value=2.5  Score=37.93  Aligned_cols=41  Identities=15%  Similarity=0.080  Sum_probs=32.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+|+|+|+|++|...+..+...|. .|..+++..++++.+++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~   43 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQ   43 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhh
Confidence            469999999999876666666787 88889988777777764

>TIGR02415 23BDH acetoin reductases

Probab=86.09  E-value=2.4  Score=36.20  Aligned_cols=38  Identities=18%  Similarity=0.197  Sum_probs=30.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++++|.|+ |.+|...+..+...|+ +|+.++++.++.+.
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~   39 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKE   39 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            36899987 9999998888888899 89888887765543

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=86.03  E-value=2.2  Score=37.37  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=29.9

Q ss_pred             CCCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .-.++++||.|+   +++|.+.+..+...|+ +|+++.+++
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~   46 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD   46 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch
Confidence            446789999986   5899998888888999 888887663

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=86.00  E-value=1.7  Score=39.45  Aligned_cols=37  Identities=22%  Similarity=0.242  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++|||.|+ |.+|...+..+...|. +|+++++....
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~   40 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPT   40 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCcc
Confidence            4689999987 9999999998888898 88888876643

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=85.83  E-value=1.5  Score=30.07  Aligned_cols=29  Identities=28%  Similarity=0.258  Sum_probs=24.9

Q ss_pred             EEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          208 IFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       208 I~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      |+|+|..|++++..++..|. +|.+++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGY-RVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTS-EEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHCCC-cEEEEecCc
Confidence            67999999999999998899 999998765

...

>PLN02583 cinnamoyl-CoA reductase

Probab=85.79  E-value=2.1  Score=37.95  Aligned_cols=34  Identities=12%  Similarity=0.126  Sum_probs=29.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ++++|||.|+ |.+|...+..+...|. +|+++.++
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~-~V~~~~R~   39 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGY-TVHAAVQK   39 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEEcC
Confidence            4578999997 9999999998888999 88888774

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=85.78  E-value=2.7  Score=36.18  Aligned_cols=35  Identities=26%  Similarity=0.170  Sum_probs=28.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -++++++|.|+ |.+|...++.+...|+ +++++.++
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~   40 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRS   40 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            35789999987 8999999998888998 77766653

>PRK07577 short chain dehydrogenase; Provisional

Probab=85.74  E-value=1.6  Score=36.76  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=29.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++++|.|+ |.+|...+..+...|. +|++++++.
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~   37 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSA   37 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            3578999987 9999998888888898 888887754

>PRK06483 dihydromonapterin reductase; Provisional

Probab=85.73  E-value=2.4  Score=35.84  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=30.0

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++||.|+ +++|...++.+...|+ +|++++++++.
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   38 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYP   38 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchh
Confidence            467999987 8999999988888899 88888887643

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.69  E-value=2.2  Score=37.48  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+   +++|.+.++.+...|+ +|+++++++
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~   41 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNE   41 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCH
Confidence            4788999986   4899998888888899 888888875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.69  E-value=2.2  Score=38.26  Aligned_cols=39  Identities=26%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~~~~~~~   41 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADPAAAAAA   41 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCHHHHHHH
Confidence            369999999999988888888898 999999998776653

>PRK08163 salicylate hydroxylase; Provisional

Probab=85.63  E-value=1.3  Score=40.74  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~   37 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA   37 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence            3579999999999999988888999 888887654

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=85.57  E-value=2.2  Score=38.34  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=41.6

Q ss_pred             CCCCEEEEEcC-CHHHHH-HHHHHHHcCCCeEEEEcCChhhHHHHHH-----cCC---CEEECCCC
Q 024496          201 EVGSTVAIFGL-GAVGLA-VAEGARLNRASKIIGVDINPEKFEIGKK-----FGI---TDFINPAT  256 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~-a~~la~~~g~~~vi~~~~~~~~~~~~~~-----~G~---~~vi~~~~  256 (267)
                      +-|+|..|.|+ .++|.+ |-++|+ .|. +|+.+.|+++|++..++     .++   ..++|+.+
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~  110 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTK  110 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCC
Confidence            45789999998 699977 666777 899 89999999999988742     342   34577766

>PRK14982 acyl-ACP reductase; Provisional

Probab=85.51  E-value=2.5  Score=38.78  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARL-NRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .-.+++|+|+|+ |.+|...+..+.. .+..+++.+.++.+++..+.
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La  198 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ  198 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH
Confidence            456789999998 8999988877764 47779999999887776653

>PRK07045 putative monooxygenase; Reviewed

Probab=85.50  E-value=1.3  Score=40.83  Aligned_cols=33  Identities=24%  Similarity=0.220  Sum_probs=28.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -+|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~   38 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGH-SVTVVERAA   38 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence            369999999999999888888899 888887555

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.47  E-value=2.4  Score=38.39  Aligned_cols=44  Identities=23%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ...+.+++|.|+ .++|...+.-+-..|+ +|+..+|+.++.+.++
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~   76 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAK   76 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHH
Confidence            345578888898 8999999998888997 9999999986666553

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=85.39  E-value=1.1  Score=36.84  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=23.6

Q ss_pred             EEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          207 AIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       207 lI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +|+|+|+.|++++..++..|...+++++++.+
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~   32 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDR   32 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            58899999999999999999954999997743

...

>PLN02778 3,5-epimerase/4-reductase

Probab=85.27  E-value=3.2  Score=36.99  Aligned_cols=54  Identities=15%  Similarity=-0.006  Sum_probs=37.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH----HHHHcCCCEEECCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE----IGKKFGITDFINPAT  256 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~----~~~~~G~~~vi~~~~  256 (267)
                      ...+|||+|+ |.+|...++.+...|. +|+.........+    .+++.+.|.||+-..
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~-~V~~~~~~~~~~~~v~~~l~~~~~D~ViH~Aa   66 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI-DFHYGSGRLENRASLEADIDAVKPTHVFNAAG   66 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC-EEEEecCccCCHHHHHHHHHhcCCCEEEECCc
Confidence            3468999987 9999999999988898 7765433222222    233567898886543

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=85.26  E-value=2.1  Score=37.96  Aligned_cols=44  Identities=20%  Similarity=0.220  Sum_probs=36.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|..
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   44 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAV   44 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCc
Confidence            37889999999987777777888 899999999998887776653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=85.24  E-value=5.4  Score=35.58  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=42.7

Q ss_pred             HHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       190 a~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++..+....++++|++||=+|+|- |.+++.+|+..|. +|++++-+++..+.+++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~  113 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEK  113 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHH
Confidence            344467889999999999998753 4556677887788 99999999988777654

>PRK13243 glyoxylate reductase; Reviewed

Probab=85.23  E-value=2.5  Score=38.62  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++.+.
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999987543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=85.05  E-value=2.7  Score=37.35  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++++.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~   42 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSR   42 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHH
Confidence            579999999999998888888898 99999999988753

>PRK07236 hypothetical protein; Provisional

Probab=85.02  E-value=1.5  Score=40.40  Aligned_cols=34  Identities=21%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+|+|+|+|..|++++..+...|. +|.++++.+
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   39 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGW-DVDVFERSP   39 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            4679999999999998888888898 888887654

>PRK07190 hypothetical protein; Provisional

Probab=85.00  E-value=1.3  Score=42.50  Aligned_cols=33  Identities=33%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|++|++++..+...|. +|.++++.+
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi-~V~llEr~~   38 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGL-NTVIVDKSD   38 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-CEEEEeCCC
Confidence            369999999999998888888899 788887664

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=85.00  E-value=6  Score=35.38  Aligned_cols=55  Identities=16%  Similarity=0.153  Sum_probs=39.8

Q ss_pred             hcchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          182 LLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++|.....+. +++..+ --.|++|+|+|.| .+|...+.++...|+ +|.++.+...
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t~  193 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRSK  193 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCch
Confidence            45655444444 445555 4578999999986 599999999999999 8877765443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=84.97  E-value=2.7  Score=37.44  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .+|.|+|+|.+|...++.+...|. .|+..+++++.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH
Confidence            479999999999888887777899 99999999998776

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=84.96  E-value=1.9  Score=36.33  Aligned_cols=35  Identities=29%  Similarity=0.271  Sum_probs=31.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+.+|+|+|+|++|...+..+..+|..++.++|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999999999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02650 dihydroflavonol-4-reductase

Probab=84.91  E-value=2.1  Score=38.85  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      ..++|||.|+ |.+|...+..+...|. +|++++++.++.+
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~~~~~~   43 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPANVK   43 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcCcchhH
Confidence            4568999987 9999999988888898 8888877765543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=84.87  E-value=1.4  Score=42.03  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=29.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+|+|+|+|+.|++++..++..|. +|+++.++.
T Consensus        10 ~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~~   43 (461)
T PLN02172         10 SQHVAVIGAGAAGLVAARELRREGH-TVVVFEREK   43 (461)
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecCC
Confidence            4789999999999999999999998 888887654

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=84.87  E-value=1.9  Score=37.50  Aligned_cols=35  Identities=26%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+|+|.|+|++|..++..+..+|..++.++|...
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            47899999999999999999999999999887543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=84.86  E-value=2  Score=38.35  Aligned_cols=38  Identities=16%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .+++|||.|+ |.+|...+..+...|+ +|+++.++.++.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~   42 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY-TINATVRDPKDR   42 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCCcch
Confidence            4689999987 9999999988888898 888776665543

>PRK06475 salicylate hydroxylase; Provisional

Probab=84.82  E-value=1.3  Score=41.11  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=28.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++|+|+|+|+.|++++.+++..|. +|.++++.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~-~V~i~E~~~   35 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGW-AVTIIEKAQ   35 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            579999999999999888888898 788887554

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=84.81  E-value=2.5  Score=42.40  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.+
T Consensus       413 ~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~  454 (676)
T TIGR02632       413 ARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAV  454 (676)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHH
Confidence            4688999987 9999998888888899 999999988766544

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=84.79  E-value=4.4  Score=36.98  Aligned_cols=61  Identities=23%  Similarity=0.168  Sum_probs=48.0

Q ss_pred             HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---ChhhHHHHHHcCCCEEECCCC
Q 024496          195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI---NPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~---~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .....+.+|.++||-.. |..|.+.+.++...|+ ++|++-.   +.||...++.||+.-|.....
T Consensus        95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a  159 (362)
T KOG1252|consen   95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIILTPPA  159 (362)
T ss_pred             HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEecChH
Confidence            34557999999999975 8888888999999999 7777643   347888889999987765433

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.74  E-value=2.4  Score=36.47  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=37.7

Q ss_pred             CCCEEEEEcC--CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGL--GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~--g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      ..+.|||.|+  |++|.+.+.-....|+ .|+++.|.-++...+. ++|.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl   54 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGL   54 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCC
Confidence            3467899974  9999987777777899 9999999999888776 6774

>PRK06924 short chain dehydrogenase; Provisional

Probab=84.65  E-value=2.6  Score=35.92  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=30.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP-EKFEI  242 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~  242 (267)
                      +++||+|+ |.+|...++.+...|+ +|+++++++ ++++.
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~   41 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTK   41 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHH
Confidence            47899987 9999998888877899 899888876 34333

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=84.64  E-value=1.5  Score=38.06  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|+|+|+|+.|++++..++..|. +|.++++...
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            38999999999998888888899 8999987653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=84.60  E-value=6  Score=35.60  Aligned_cols=45  Identities=9%  Similarity=-0.096  Sum_probs=37.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -....+++|+|+|..|.+.+..+. ..+.++|.+.++++++.+.+.
T Consensus       122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a  167 (304)
T PRK07340        122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFC  167 (304)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHH
Confidence            345678999999999999888886 468889999999998876653

>PRK06184 hypothetical protein; Provisional

Probab=84.52  E-value=1.4  Score=42.39  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++.++...|. +|.++++.+
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi-~v~viE~~~   36 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGV-SFRLIEKAP   36 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            469999999999999988888899 888887653

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=84.51  E-value=1.9  Score=37.22  Aligned_cols=36  Identities=25%  Similarity=0.429  Sum_probs=29.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ |.+|.+.+..+...|+ +|+.++++.+
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~   44 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGG   44 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            4678999987 8999999988888898 8887776543

>PRK08328 hypothetical protein; Provisional

Probab=84.47  E-value=2  Score=37.08  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+.+|+|+|+|++|..++..+-..|..++.++|...
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            457899999999999999999999999999997543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=84.45  E-value=2.5  Score=39.22  Aligned_cols=32  Identities=34%  Similarity=0.435  Sum_probs=26.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..|+|.|+|++|++++..+...|. +|.++++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~-~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDL-RIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            359999999999997777777898 88888864

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=84.41  E-value=2.3  Score=33.13  Aligned_cols=34  Identities=35%  Similarity=0.397  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..+|+|+|+|++|...+..+-..|..++..+|..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            4689999999999998888888899999999754

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=84.40  E-value=3.5  Score=37.49  Aligned_cols=55  Identities=25%  Similarity=0.404  Sum_probs=42.6

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH----HcCCCE
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK----KFGITD  250 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~----~~G~~~  250 (267)
                      .+...++++++||.+|+| .|..++.+++..+. ..|++++.+++.++.++    +.|.+.
T Consensus        73 l~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n  132 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN  132 (322)
T ss_pred             HHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            455678899999999997 58889999997764 37999999998766654    366653

>PRK12747 short chain dehydrogenase; Provisional

Probab=84.24  E-value=3.4  Score=35.27  Aligned_cols=38  Identities=18%  Similarity=0.128  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~  240 (267)
                      .+++++|.|+ +++|.+.++.+...|+ +|+++. +..++.
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~   42 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEA   42 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHH
Confidence            4688999987 8999999998888899 777653 444443

>PRK12831 putative oxidoreductase; Provisional

Probab=84.21  E-value=1.9  Score=41.12  Aligned_cols=35  Identities=23%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      ...+.+|+|+|+|+.|+.++..++..|. +|++++.
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~  171 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEA  171 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEec
Confidence            4568899999999999999999998999 7887764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=84.20  E-value=3.9  Score=38.56  Aligned_cols=35  Identities=34%  Similarity=0.390  Sum_probs=31.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++|+|+|+|.+|+.++..+...|+ .|.+++++.
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            46899999999999999999999999 899998864

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=84.16  E-value=2.5  Score=38.51  Aligned_cols=37  Identities=38%  Similarity=0.363  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .|.+|.|+|.|.+|...+..++..|. +|++.+++++.
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~  181 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNK  181 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhH
Confidence            56789999999999999999999999 99999987654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=84.14  E-value=2.2  Score=37.97  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .+.+|||.|+ |.+|...+..+...|. +|++++++.++
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~~~~   40 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRDPND   40 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcCCCc
Confidence            3678999987 9999999988888899 88888776543

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=84.10  E-value=2.3  Score=40.02  Aligned_cols=30  Identities=37%  Similarity=0.471  Sum_probs=24.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHH----cCCCeEEEEcC
Q 024496          205 TVAIFGLGAVGLAVAEGARL----NRASKIIGVDI  235 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~----~g~~~vi~~~~  235 (267)
                      .|+|+|+|++|++++..+..    .|. +|.++++
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~-~v~viE~   35 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDL-KVLLLDA   35 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCC-eEEEEeC
Confidence            38999999999887665554    688 8888887

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK12746 short chain dehydrogenase; Provisional

Probab=84.06  E-value=3  Score=35.57  Aligned_cols=39  Identities=18%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~  241 (267)
                      .+.+++|.|+ |.+|...+..+...|+ +|++ ..++.++.+
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~   45 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAAD   45 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            4678999987 9999999988888898 6665 466665543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=84.06  E-value=3.3  Score=35.09  Aligned_cols=45  Identities=13%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh--hHHHHHHcCCCEE
Q 024496          206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE--KFEIGKKFGITDF  251 (267)
Q Consensus       206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~--~~~~~~~~G~~~v  251 (267)
                      |+|+|+ |.+|...++.+...+. +|.++.|+..  ..+.+++.|+..+
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv   48 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV   48 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe
Confidence            789998 9999999999998887 8888888753  4556677888644

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=84.01  E-value=1.5  Score=39.58  Aligned_cols=46  Identities=26%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      ..+|.|+|.|.+|.-++.+|.-+|+ +|.+++.+.+|++.+.+ ++-+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~r  214 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGR  214 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCce
Confidence            3467888999999999999999999 99999999999999876 4543

>PRK12743 oxidoreductase; Provisional

Probab=84.01  E-value=3.2  Score=35.64  Aligned_cols=37  Identities=14%  Similarity=-0.089  Sum_probs=28.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKF  240 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~  240 (267)
                      ++++||.|+ +.+|...++.+...|+ +|+++. ++.++.
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~   40 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGA   40 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHH
Confidence            468999987 8999999998888999 777664 454443

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=83.97  E-value=2.7  Score=38.23  Aligned_cols=37  Identities=35%  Similarity=0.469  Sum_probs=33.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -.|+++.|+|.|.+|++.+..++..|. +|+..++.+.
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~  180 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN  180 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC
Confidence            358899999999999999999998888 9999988764

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.95  E-value=4.1  Score=34.90  Aligned_cols=42  Identities=21%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~~  244 (267)
                      .+++++|.|+ |++|.+.++.+...|+ +|+++.+ +++..+.++
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~   49 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELR   49 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHH
Confidence            4688999987 9999998888888898 7776644 333333333

>PRK08278 short chain dehydrogenase; Provisional

Probab=83.95  E-value=2.1  Score=37.34  Aligned_cols=36  Identities=33%  Similarity=0.380  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++++++|.|+ |++|...+..+...|+ +|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            5678999987 8999998888888899 8998887654

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.91  E-value=2.5  Score=36.65  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+++++|.|+   +++|.+.+..+...|+ +|++++++
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~   42 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAG   42 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCc
Confidence            4788999986   5999998888888899 88888654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=83.88  E-value=4.9  Score=36.27  Aligned_cols=45  Identities=16%  Similarity=0.125  Sum_probs=35.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -....+|+|+|+|..|.+.+.... ..+.++|.+.++++++.+.+.
T Consensus       122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a  167 (314)
T PRK06141        122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALA  167 (314)
T ss_pred             CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            356788999999999998876444 467779999999998876654

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=83.85  E-value=2.6  Score=37.62  Aligned_cols=41  Identities=27%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++.|+|.|| +++|.+.+.-.-.+|+ +++.+.+..++++.+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v   52 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERV   52 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHH
Confidence            5788999998 7999875555555799 666666667666665

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=83.78  E-value=1.6  Score=42.52  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=26.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++|+|+|||+.|++++..++..|. .+++.++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE~~~   34 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGL-EVTCFEKSD   34 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT--EEEEEESSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-CCeEEecCC
Confidence            689999999999999999999999 888887665

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=83.75  E-value=2.7  Score=35.53  Aligned_cols=34  Identities=24%  Similarity=0.116  Sum_probs=29.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+++|||+|+|.+|...+..+...|+ +|.++..+
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            57899999999999998888888898 88888654

>PRK08244 hypothetical protein; Provisional

Probab=83.75  E-value=1.5  Score=41.91  Aligned_cols=32  Identities=31%  Similarity=0.340  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|++|++++..+...|. +|.++++.+
T Consensus         4 dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~~   35 (493)
T PRK08244          4 EVIIIGGGPVGLMLASELALAGV-KTCVIERLK   35 (493)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            58999999999998888888899 888887654

>PRK07201 short chain dehydrogenase; Provisional

Probab=83.74  E-value=3  Score=41.24  Aligned_cols=40  Identities=28%  Similarity=0.225  Sum_probs=33.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++++|.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~  411 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDEL  411 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            678999987 8999998888888899 999999988776543

>PRK05855 short chain dehydrogenase; Validated

Probab=83.71  E-value=3.1  Score=40.03  Aligned_cols=41  Identities=22%  Similarity=0.283  Sum_probs=34.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+.++||+|+ |++|...++.+...|+ +|++++++.++++.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~  355 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERT  355 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4578999987 9999998888888899 799999988776543

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=83.68  E-value=3.6  Score=34.67  Aligned_cols=35  Identities=17%  Similarity=0.227  Sum_probs=27.9

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-Chhh
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEK  239 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~  239 (267)
                      +++||+|+ |.+|...+..+...|+ +++++.+ ++++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~   37 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEER   37 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHH
Confidence            46899987 9999998888888899 7877766 4443

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=83.67  E-value=3.2  Score=37.61  Aligned_cols=47  Identities=28%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEE-EcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIG-VDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~~~~~~G~~  249 (267)
                      ++++|.|+|.|.+|.+.+.-++..|. ++++ ..++.++.+.+.+.|+.
T Consensus         2 ~~kkIgiIG~G~mG~AiA~~L~~sG~-~Viv~~~~~~~~~~~a~~~Gv~   49 (314)
T TIGR00465         2 KGKTVAIIGYGSQGHAQALNLRDSGL-NVIVGLRKGGASWKKATEDGFK   49 (314)
T ss_pred             CcCEEEEEeEcHHHHHHHHHHHHCCC-eEEEEECcChhhHHHHHHCCCE
Confidence            47889999999999999999999998 5554 55555566666677764

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=83.66  E-value=4  Score=38.38  Aligned_cols=45  Identities=20%  Similarity=0.164  Sum_probs=39.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ....+++|+|.|.+|...++.+...|. .+++++.++++.+.+++.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~  273 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEE  273 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence            346789999999999999999888888 899999999988887764

>PRK05599 hypothetical protein; Provisional

Probab=83.64  E-value=3.2  Score=35.55  Aligned_cols=37  Identities=14%  Similarity=0.092  Sum_probs=29.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++|.|+ +++|.+.+.... .|. +|+++++++++++.+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~-~Vil~~r~~~~~~~~   39 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGE-DVVLAARRPEAAQGL   39 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCC-EEEEEeCCHHHHHHH
Confidence            5889987 899998777655 487 899999988877654

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.60  E-value=2.5  Score=40.21  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ..+++|+|+|.|..|.+++.+++ .|+ +|+++|..++.
T Consensus         4 ~~~~~v~v~G~G~sG~a~~~~L~-~g~-~v~v~D~~~~~   40 (454)
T PRK01368          4 HTKQKIGVFGLGKTGISVYEELQ-NKY-DVIVYDDLKAN   40 (454)
T ss_pred             CCCCEEEEEeecHHHHHHHHHHh-CCC-EEEEECCCCCc
Confidence            45789999999999999999999 598 99999965443

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=83.59  E-value=2.4  Score=38.48  Aligned_cols=37  Identities=24%  Similarity=0.287  Sum_probs=30.9

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +-+.++|||.|+ |.+|...+..+...|. +|+++++..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~~   49 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNFS   49 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            345579999987 9999999999988898 899998743

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=83.49  E-value=1.5  Score=40.64  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   51 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQP   51 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCC
Confidence            469999999999998888888898 888887544

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=83.45  E-value=1.7  Score=39.68  Aligned_cols=31  Identities=35%  Similarity=0.469  Sum_probs=27.3

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      |+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         2 ViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~   32 (385)
T TIGR01988         2 IVIVGGGMVGLALALALARSGL-KIALIEATP   32 (385)
T ss_pred             EEEECCCHHHHHHHHHHhcCCC-EEEEEeCCC
Confidence            8899999999998888888898 899887775

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.37  E-value=3.2  Score=36.14  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCC---HHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLG---AVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g---~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++++|.|++   ++|.+.+..+...|+ +|+.++++.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~   42 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   42 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch
Confidence            57889999873   799988887777899 888887763

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.36  E-value=3.5  Score=35.04  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=29.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~  241 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++. +.+++.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~   44 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAE   44 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHH
Confidence            3578999987 9999999888888898 776654 3444433

>PRK08013 oxidoreductase; Provisional

Probab=83.34  E-value=1.7  Score=40.37  Aligned_cols=33  Identities=33%  Similarity=0.365  Sum_probs=27.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|+|+|+|++|++++..+...|. +|.++++.++
T Consensus         5 dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~~   37 (400)
T PRK08013          5 DVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRVP   37 (400)
T ss_pred             CEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCCC
Confidence            58999999999998888777898 8998886543

>PRK08219 short chain dehydrogenase; Provisional

Probab=83.16  E-value=3.3  Score=34.54  Aligned_cols=39  Identities=18%  Similarity=0.162  Sum_probs=30.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++||.|+ |.+|...+..+... . +|++++++.++.+.+.
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~   43 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELA   43 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHH
Confidence            57999987 99999888777666 5 8999999887755443

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.13  E-value=3.7  Score=35.55  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=28.5

Q ss_pred             CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -++++++|.|+   +++|.+.+..+...|+ +|+++.+.+
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~   42 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVD   42 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            35788999984   5899998888888899 888876553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=83.11  E-value=3.4  Score=36.46  Aligned_cols=37  Identities=19%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~   40 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVD   40 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHH
Confidence            469999999999998888888898 8999999998875

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.06  E-value=4.3  Score=34.09  Aligned_cols=33  Identities=18%  Similarity=0.167  Sum_probs=26.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      +.++|||.|+ |.+|...+..+...|. +|+++.+
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~   38 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGA-DVVVHYR   38 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            4568999987 9999999998888899 6555433

>PRK07069 short chain dehydrogenase; Validated

Probab=83.05  E-value=2.9  Score=35.50  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=29.4

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHH
Q 024496          206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEIG  243 (267)
Q Consensus       206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~~  243 (267)
                      ++|.|+ |.+|...++.+...|+ +|++++++ .++++.+
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~   40 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAF   40 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHH
Confidence            788987 8999998888888899 89999887 5554443

>PRK07538 hypothetical protein; Provisional

Probab=83.05  E-value=1.8  Score=40.36  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|++++..++..|. +|.++++.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   33 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGI-EVVVFEAAP   33 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-cEEEEEcCC
Confidence            58999999999999988888899 788887665

>PRK07985 oxidoreductase; Provisional

Probab=83.02  E-value=3.3  Score=36.66  Aligned_cols=35  Identities=14%  Similarity=0.024  Sum_probs=29.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -+++++||.|+ +++|.+.++.+...|+ +|+++++.
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCC
Confidence            36679999987 8999998888888899 88887653

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=83.01  E-value=3.5  Score=37.21  Aligned_cols=42  Identities=26%  Similarity=0.103  Sum_probs=35.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+.+.
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~   46 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAE   46 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh
Confidence            479999999999998888887888 899999988887776654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=83.01  E-value=7.1  Score=35.39  Aligned_cols=45  Identities=16%  Similarity=0.069  Sum_probs=35.7

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGA-RLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la-~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -+..++++|+|+|..|.+.+..+ ...++++|.+.++++++.+.+.
T Consensus       124 ~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~  169 (325)
T PRK08618        124 REDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFA  169 (325)
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHH
Confidence            34567899999999998777554 4678889999999998876653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=82.95  E-value=2.5  Score=38.13  Aligned_cols=35  Identities=31%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|++|.|+|-|.+|...+++++..|. +|++.++..
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~~~  178 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYSTSG  178 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECCCc
Confidence            68899999999999999999999999 999998753

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=82.87  E-value=3  Score=38.36  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=27.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         6 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~   38 (391)
T PRK08020          6 TDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA   38 (391)
T ss_pred             ccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            468999999999998877777788 888887653

>PRK12937 short chain dehydrogenase; Provisional

Probab=82.82  E-value=3.7  Score=34.66  Aligned_cols=34  Identities=12%  Similarity=0.095  Sum_probs=27.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ++.+++|+|+ |.+|...+..+...|+ +++++.++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~   38 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAG   38 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence            5678999987 9999999998888899 66665543

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=82.82  E-value=2.8  Score=34.29  Aligned_cols=32  Identities=31%  Similarity=0.434  Sum_probs=27.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|+.++.-+...+. ++++++.+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~-~v~ii~~~~   32 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGA-KVLIIEKSP   32 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEESSSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCC-eEEEEeccc
Confidence            58999999999999999998899 888886544

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=82.79  E-value=2.8  Score=37.72  Aligned_cols=41  Identities=22%  Similarity=0.186  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.|+++||.|+   .++|.+.++.+...|+ +|++ .+..++++..
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l~~~   50 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPALNIF   50 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchhhHH
Confidence            35889999988   7999999999988999 7777 4555554443

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=82.53  E-value=3.2  Score=35.65  Aligned_cols=46  Identities=22%  Similarity=0.159  Sum_probs=38.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .+|||.|+ |.+|...+..+...|. +|.+..|++++..... .+.+.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~-~v~~~~r~~~~~~~~~-~~v~~~   47 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH-EVRAAVRNPEAAAALA-GGVEVV   47 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC-EEEEEEeCHHHHHhhc-CCcEEE
Confidence            36899988 9999999999998888 9999999998888877 555443

>PLN02256 arogenate dehydrogenase

Probab=82.53  E-value=5.4  Score=35.93  Aligned_cols=54  Identities=13%  Similarity=0.184  Sum_probs=40.7

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++....-....+|.|+|.|.+|.+.+..++..|. +|+++++++. .+.+.++|+.
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~   80 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVS   80 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCe
Confidence            3455555567789999999999988888887787 8999988764 3555667763

>PRK05868 hypothetical protein; Validated

Probab=82.45  E-value=2.1  Score=39.41  Aligned_cols=33  Identities=24%  Similarity=0.215  Sum_probs=27.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+|+|.|+|+.|++++..+...|. +|.++++.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~-~v~viE~~~   34 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGY-SVTMVERHP   34 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEcCCC
Confidence            369999999999998888887898 788887554

>TIGR02028 ChlP geranylgeranyl reductase

Probab=82.39  E-value=2  Score=40.07  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +|+|+|+|+.|.+++..+...|. +|.++++...
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~-~V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGI-QTFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEEecCCC
Confidence            58999999999999888888899 8999987643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=82.35  E-value=4.1  Score=36.45  Aligned_cols=42  Identities=21%  Similarity=0.150  Sum_probs=35.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +|.|+|+|.+|...+..+...|. .|.++++++++.+.+++.+
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~   44 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDPEQAAEINADR   44 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcC
Confidence            68999999999988887777788 8999999988888776654

>PRK09126 hypothetical protein; Provisional

Probab=82.33  E-value=1.9  Score=39.67  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=28.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~-~v~v~E~~~   36 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGL-KVTLIERQP   36 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCC
Confidence            358999999999998888888899 888887654

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=82.32  E-value=3.1  Score=36.26  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=30.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ...+|+|+|+|++|..++..+-..|..++.++|..
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45789999999999999999999999998888654

>PRK08507 prephenate dehydrogenase; Validated

Probab=82.20  E-value=4.7  Score=35.47  Aligned_cols=45  Identities=24%  Similarity=0.415  Sum_probs=36.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|.|+|.|.+|.+.+..++..|. .+|++.++++++.+.+.+.|..
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~   47 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLV   47 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCC
Confidence            58899999999987777777775 3788899999998888888863

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=82.16  E-value=2.1  Score=39.74  Aligned_cols=33  Identities=21%  Similarity=0.277  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQS   35 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            468999999999998888888899 888887665

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=82.08  E-value=4.3  Score=36.02  Aligned_cols=43  Identities=23%  Similarity=0.294  Sum_probs=36.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~   46 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGA   46 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCC
Confidence            68999999999887777777787 89999999988888777665

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=82.05  E-value=5.1  Score=35.21  Aligned_cols=34  Identities=32%  Similarity=0.273  Sum_probs=29.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      --+|.+|+|.|-|.+|+.+++++..+|+ +|+++.
T Consensus        35 ~l~g~~vaIqGfGnVG~~~a~~L~e~Ga-kvvaVs   68 (254)
T cd05313          35 TLKGKRVAISGSGNVAQYAAEKLLELGA-KVVTLS   68 (254)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            3468899999999999999999999999 888653

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=82.04  E-value=4.5  Score=35.20  Aligned_cols=50  Identities=16%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh------hhHHH-HHHcCCCEEECCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP------EKFEI-GKKFGITDFINPA  255 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~------~~~~~-~~~~G~~~vi~~~  255 (267)
                      +|||+|+ |.+|...+..+...|. +|+++++..      +.++. +.+...|.|++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r~~~d~~~~~~~~~~~~~~~~d~vi~~a   58 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTSSQLDLTDPEALERLLRAIRPDAVVNTA   58 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCCcccCCCCHHHHHHHHHhCCCCEEEECC
Confidence            4899987 9999999999988898 888887742      22222 2233458887654

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=81.96  E-value=3.4  Score=38.33  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+.+|+|+|+|++|..++..+...|..++.++|..
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999999999876

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=81.95  E-value=2.8  Score=38.12  Aligned_cols=32  Identities=47%  Similarity=0.667  Sum_probs=31.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      |++|.|+|.|.+|...++.++.+|. +|++.++
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm-~v~~~d~  173 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGM-KVIGYDP  173 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEECC
Confidence            7899999999999999999999999 9999998

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=81.90  E-value=2.7  Score=38.77  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=30.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+|.|+|+|.+|.|.++.++.+|. ++++++.+++
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~-~v~vLdp~~~   35 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGI-KVIVLDPDAD   35 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCC-EEEEecCCCC
Confidence            579999999999999999999999 9999986553

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=81.89  E-value=6.1  Score=29.46  Aligned_cols=61  Identities=28%  Similarity=0.310  Sum_probs=46.2

Q ss_pred             HHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          194 AWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .++.+++..-+.+++.-. -..-+.++..++.++. .++++...+++..+.++++|+++++.+
T Consensus        54 ~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~~g~d~vi~P  116 (116)
T PF02254_consen   54 VLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQAGADHVISP  116 (116)
T ss_dssp             HHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHTT-SEEEEH
T ss_pred             HHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHHCCcCEEECc
Confidence            456778887788888743 5666777788886543 489998888999999999999999863

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=81.84  E-value=4.6  Score=33.93  Aligned_cols=36  Identities=22%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++++++|.|+ |.+|...+..+...|+ +|+++.++.+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~   40 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSE   40 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4578999987 9999999999888899 7766655443

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=81.78  E-value=3.2  Score=37.24  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=31.4

Q ss_pred             EEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          206 VAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       206 VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      |||.|+ |.+|...+.-+...+.++++++++++.++-.++
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~   40 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELE   40 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHH
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHH
Confidence            789987 999998887777778889999999998876664

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=81.78  E-value=3.2  Score=35.02  Aligned_cols=35  Identities=40%  Similarity=0.459  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ...+|+|.|+|++|...++.+-..|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            44789999999999999988888999889999877

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=81.77  E-value=4.5  Score=34.67  Aligned_cols=35  Identities=23%  Similarity=0.391  Sum_probs=29.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++++|.|+ |++|.+.++.+...|+ +|+.+++..
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~   44 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE   44 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc
Confidence            4688999987 8999999998888899 888876543

>PRK06128 oxidoreductase; Provisional

Probab=81.70  E-value=3.4  Score=36.64  Aligned_cols=35  Identities=23%  Similarity=0.123  Sum_probs=28.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++.+.
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~   88 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGA-DIALNYLP   88 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence            35789999987 9999998888888899 77776543

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=81.68  E-value=2.4  Score=37.19  Aligned_cols=37  Identities=24%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ....-.|+|+|+|+.|++++..+...|. +|+++++..
T Consensus        22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~-~V~liEk~~   58 (257)
T PRK04176         22 DYLEVDVAIVGAGPSGLTAAYYLAKAGL-KVAVFERKL   58 (257)
T ss_pred             HhccCCEEEECccHHHHHHHHHHHhCCC-eEEEEecCC
Confidence            3334569999999999998888887899 888887653

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=81.66  E-value=5.1  Score=37.88  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh-hH----HHHHHcCCCE
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE-KF----EIGKKFGITD  250 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~-~~----~~~~~~G~~~  250 (267)
                      +|+|+|.|+.|++++.++...|+ .|.+.|+... +.    +.+++.|..-
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~~~~~~~~~~l~~~gi~~   51 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDSPELLERQQELEQEGITV   51 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCchhhHHHHHHHHHcCCEE
Confidence            58999999999999999999999 9999997542 12    2345567543

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=81.65  E-value=2.3  Score=44.35  Aligned_cols=35  Identities=20%  Similarity=0.191  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..|++|+|+|+|+.|++++..+...|. +|.++++.
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~  338 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF  338 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence            358999999999999999999999999 88888754

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.65  E-value=3.7  Score=38.66  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=29.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +++++||.|+ |++|...++.+...|+ +|+++++.
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~  243 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVP  243 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999987 9999999998888999 88888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	267
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-42
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		8e-42
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		8e-40
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		8e-40
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		8e-40
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		9e-40
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		4e-38
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-37
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		8e-37
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		9e-37
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		9e-37
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-36
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		1e-36
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		1e-36
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		1e-36
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		2e-36
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-36
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-36
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		3e-36
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		4e-36
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		5e-36
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		8e-36
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-35
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-35
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		3e-34
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		3e-34
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		1e-33
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		3e-32
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		5e-32
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		7e-32
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		1e-30
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		1e-14
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		1e-04
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		2e-04
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  169 bits (429), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/256 (39%), Positives = 131/256 (51%), Gaps = 5/256 (1%)
Query: 11  GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           G+VI CKAA+   P KPL          +A E+RIKIL T+LCH+D   W  S   P+  
Sbjct: 4   GQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTW--SGKDPEGL 61
Query: 71  LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
            P I                      D V+P +  +C EC+ CKS K+N C K       
Sbjct: 62  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 121
Query: 131 N-MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             M  D  SRF  + G  I+HF+  S+F++Y+VV    V KI P  PL   CLL CGV T
Sbjct: 122 GIMMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPT 180
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G+GA W  A VE GS VAIF             +   AS+IIG+DI+ +K+E  KKFG+ 
Sbjct: 181 GLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN 240
Query: 250 DFINPATCGDKTVSQV 265
           +F+NP    DK + +V
Sbjct: 241 EFVNPKD-HDKPIQEV 255

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  167 bits (422), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 131/254 (51%), Gaps = 10/254 (3%)
Query: 5   SASPKAGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSST 64
           S+S   G+VI CKAA+   P KPL          +A E+R+K+L T+LCH+D   W  S 
Sbjct: 16  SSSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTW--SG 73
Query: 65  DLPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF 124
             P+   P +                      D V+P +  +C EC+ CKS K+N C K 
Sbjct: 74  KDPEGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKV 133
Query: 125 ----GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA 180
               G G    M  D  SRF  + G  I+HF+  S+F++Y+VV    V KI P  PL   
Sbjct: 134 RAATGVGV---MMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKV 189
Query: 181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKF 240
           CLL CGV TG+GA W  A VE GS VA+F             +   AS+IIG+DI+ +KF
Sbjct: 190 CLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKF 249
Query: 241 EIGKKFGITDFINP 254
           +  K FG+T+FINP
Sbjct: 250 DRAKNFGVTEFINP 263

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 131/249 (52%), Gaps = 11/249 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL          KA E+RIKI+ T++CH+D  +  S  D P+ 
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGAD-PEG 58
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF----G 125
             PVI                      D V+P++   CGEC+ C + K+N C K     G
Sbjct: 59  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 118
Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           +G  P    DGTSRF   KG  I H++  S+F+EY+VV    V KI P  PL   CLL C
Sbjct: 119 KGLMP----DGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 173
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G+STG GAA   A +E GS  A+F             ++  AS+IIGVDIN +KF   K+
Sbjct: 174 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 233
Query: 246 FGITDFINP 254
           FG T+ INP
Sbjct: 234 FGATECINP 242

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  160 bits (405), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 131/249 (52%), Gaps = 11/249 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL          KA E+RIKI+ T++CH+D  +  S  D P+ 
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGAD-PEG 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF----G 125
             PVI                      D V+P++   CGEC+ C + K+N C K     G
Sbjct: 60  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 119
Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           +G  P    DGTSRF   KG  I H++  S+F+EY+VV    V KI P  PL   CLL C
Sbjct: 120 KGLMP----DGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 174
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G+STG GAA   A +E GS  A+F             ++  AS+IIGVDIN +KF   K+
Sbjct: 175 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 234
Query: 246 FGITDFINP 254
           FG T+ INP
Sbjct: 235 FGATECINP 243

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  160 bits (404), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 131/249 (52%), Gaps = 11/249 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL          KA E+RIKI+ T++CH+D  +  S  D P+ 
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGAD-PEG 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF----G 125
             PVI                      D V+P++   CGEC+ C + K+N C K     G
Sbjct: 60  CFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 119
Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           +G  P    DGTSRF   KG  I H++  S+F+EY+VV    V KI P  PL   CLL C
Sbjct: 120 KGLMP----DGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 174
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G+STG GAA   A +E GS  A+F             ++  AS+IIGVDIN +KF   K+
Sbjct: 175 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 234
Query: 246 FGITDFINP 254
           FG T+ INP
Sbjct: 235 FGATECINP 243

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  160 bits (404), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 131/249 (52%), Gaps = 11/249 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL          KA E+RIKI+ T++CH+D  +  S  D P+ 
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTD-AYTLSGAD-PEG 58
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKF----G 125
             PVI                      D V+P++   CGEC+ C + K+N C K     G
Sbjct: 59  CFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 118
Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           +G  P    DGTSRF   KG  I H++  S+F+EY+VV    V KI P  PL   CLL C
Sbjct: 119 KGLMP----DGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGC 173
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G+STG GAA   A +E GS  A+F             ++  AS+IIGVDIN +KF   K+
Sbjct: 174 GISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE 233
Query: 246 FGITDFINP 254
           FG T+ INP
Sbjct: 234 FGATECINP 242

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/244 (38%), Positives = 121/244 (49%), Gaps = 3/244 (1%)
Query: 11  GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GKVI+CKAA+     KPL           A EIRIKI+ T +CH+D+          K  
Sbjct: 4   GKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKH--KDG 61
Query: 71  LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
            PV+                      + V+P+F   CGECR C+S K+N C K      P
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 131 NMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
           ++     +RF   KG  +  FL  S+F++Y+VV+   V KI P  PL   CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 191 VGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGITD 250
            GAA   A VE GST A+F                 A +II VD+NP+KFE  K FG TD
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240
Query: 251 FINP 254
           F+NP
Sbjct: 241 FVNP 244

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 123/245 (50%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA+E+RIK++   +CH+D      +      
Sbjct: 3   AGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTDDHVVSGNL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK+ +SN C K   G  
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGT RF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A  VA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  150 bits (378), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN ++F   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++   +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK+ +SN C K   G  
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGT RF    G  IHHF+ +S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTLQDGTRRFT-CSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA+E+RIK++   +C +D      +      
Sbjct: 3   AGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK+ +SN C K   G  
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGT RF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A  VA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA+E+RIK++   +C +D      +      
Sbjct: 3   AGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTDDHVVSGNL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK+ +SN C K   G  
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGT RF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A  VA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/245 (37%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA+E+RIK++   +C +D      +      
Sbjct: 3   AGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTDDHVVSGNL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+CR CK+ +SN C K   G  
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGT RF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A  VA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  148 bits (373), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P++   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 122/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P++   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  147 bits (370), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 121/245 (49%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++ T +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+    CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECVNP 243

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 5/245 (2%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++   +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL---VA 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+C  CK  + N C K     R
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPR 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             M +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 GTM-QDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFST 177
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 178 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 237
Query: 250 DFINP 254
           + +NP
Sbjct: 238 ECVNP 242

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  145 bits (366), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/245 (38%), Positives = 122/245 (49%), Gaps = 5/245 (2%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++   +C SD      +      
Sbjct: 3   AGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTL---VA 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+F   CG+C  CK  + N C K     R
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPR 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             M +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 GTM-QDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFST 177
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+F             +   A++IIGVDIN +KF   K+ G T
Sbjct: 178 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 237
Query: 250 DFINP 254
           + +NP
Sbjct: 238 ECVNP 242

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 119/248 (47%), Gaps = 7/248 (2%)
Query: 11  GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GKVI+CKAAI    GKPL          KA E+RI+I+ TSLCH+D T   S      L 
Sbjct: 6   GKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSK--FEGLA 63
Query: 71  LPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
            PVI                      D V+P++   C +C+ C S  +N C K      P
Sbjct: 64  FPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSP 123
Query: 131 ----NMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
                +  D TSRF   KG  ++HF   S+F++Y+VV   ++ KI     L   CLL CG
Sbjct: 124 ASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCG 182
Query: 187 VSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKF 246
            STG GAA   A V  GST A+F             +   AS+IIG+DIN EKF   K  
Sbjct: 183 FSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKAKAL 242
Query: 247 GITDFINP 254
           G TD +NP
Sbjct: 243 GATDCLNP 250

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 120/245 (48%), Gaps = 4/245 (1%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP           KA E+RIK++   +C +D      +      
Sbjct: 3   AGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTM---VT 59
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI                      D V+P+    CG+CR CK+ +SN C K      
Sbjct: 60  PLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNP 119
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +   IHHFL IS+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 QGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFST 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A  VA V  GST A+F             +   A++II VDIN +KF   K+ G T
Sbjct: 179 GYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGAT 238
Query: 250 DFINP 254
           + INP
Sbjct: 239 ECINP 243

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 120/245 (48%), Gaps = 5/245 (2%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGK I CKAA+   P KPL          KA E+RIKIL + +C SD +  K   ++   
Sbjct: 4   AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLK---EIIPS 60
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PVI                      D V+P+F   CG CR CKSS SN C K   G +
Sbjct: 61  KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120
Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             +  D TSRF   +G  I++ +  S+FTEY+VV    V KI P  PL  +CL+ CG +T
Sbjct: 121 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFAT 178
Query: 190 GVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GAA   A V  GST A+F             +   AS+IIGV  + +KF    + G T
Sbjct: 179 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 238
Query: 250 DFINP 254
           + +NP
Sbjct: 239 ECLNP 243

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/248 (37%), Positives = 121/248 (48%), Gaps = 11/248 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     +P           K  E+RIKIL T +C +D    K  T + K 
Sbjct: 3   AGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKG-TMVSKF 61
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSK---FGR 126
           P  VI                      D V+P+F   C EC  C++   N C +    GR
Sbjct: 62  P--VIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGR 119
Query: 127 GYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
           G    +  DGT+RF   KG  +HHFLN S+FTEY+VVD + V KI    P    CL+ CG
Sbjct: 120 G----VLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCG 174
Query: 187 VSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKF 246
            STG GAA K   V+ GST  +F             +   AS+IIG+D+N +KFE     
Sbjct: 175 FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 234
Query: 247 GITDFINP 254
           G T+ I+P
Sbjct: 235 GATECISP 242

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 121/248 (48%), Gaps = 11/248 (4%)
Query: 10  AGKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     +P           K  E+RIKIL T +C +D    K  T + K 
Sbjct: 3   AGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKG-TMVSKF 61
Query: 70  PLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSK---FGR 126
           P  VI                      D V+P+F   C EC  C++   N C +    GR
Sbjct: 62  P--VIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGR 119
Query: 127 GYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
           G    +  DGT+RF   KG  +HHF+N S+FTEY+VVD + V KI    P    CL+ CG
Sbjct: 120 G----VLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCG 174
Query: 187 VSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKF 246
            STG GAA K   V+ GST  +F             +   AS+IIG+D+N +KFE     
Sbjct: 175 FSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV 234
Query: 247 GITDFINP 254
           G T+ I+P
Sbjct: 235 GATECISP 242

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 126/260 (48%), Gaps = 11/260 (4%)
Query: 11  GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GKVI+CKAAI    G PL          KA E+RI+++ T +CH+D+    ++TD  K  
Sbjct: 4   GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDI----NATDPKKKA 59
Query: 71  L-PVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           L PV+                      D V+P F   C  C+ C S  +N C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119
Query: 130 PNMPR----DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           P + +    D TSRF   KG  I+HF+ +SSF++Y+VV   ++ ++     L   CL+ C
Sbjct: 120 PTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G S+G GAA   A V  GST A+F             ++  AS+II +DIN EKF   K 
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 238
Query: 246 FGITDFINPATCGDKTVSQV 265
            G TD +NP    DK V  V
Sbjct: 239 LGATDCLNPREL-DKPVQDV 257

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/260 (35%), Positives = 125/260 (48%), Gaps = 11/260 (4%)
Query: 11  GKVIRCKAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP 70
           GKVI+CKAAI    G PL          KA E+RI+++ T +C +D+    ++TD  K  
Sbjct: 4   GKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDI----NATDPKKKA 59
Query: 71  L-PVIFXXXXXXXXXXXXXXXXXXXXRDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           L PV+                      D V+P F   C  C+ C S  +N C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119
Query: 130 PNMPR----DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           P + +    D TSRF   KG  I+HF+ +SSF++Y+VV   ++ ++     L   CL+ C
Sbjct: 120 PTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178
Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKK 245
           G S+G GAA   A V  GST A+F             ++  AS+II +DIN EKF   K 
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 238
Query: 246 FGITDFINPATCGDKTVSQV 265
            G TD +NP    DK V  V
Sbjct: 239 LGATDCLNPREL-DKPVQDV 257

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 88/216 (40%), Gaps = 5/216 (2%)
Query: 42  EIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFXXXXXXXXXXXXXXXXXXXXRDLVLP 101
           E+ +K++ T +CH+D+           +PLP +                      D V+ 
Sbjct: 33  EVLVKVVATGMCHTDLIVRDQKY---PVPLPAVLGHEGSGIIEAIGPNVTELQVGDHVV- 88
Query: 102 IFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEY 160
           + +  CG+C  C +     CS+F GR +         +     +G V  HF   SSF  Y
Sbjct: 89  LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATY 148
Query: 161 SVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFXXXXXXXXXXX 220
           ++    + VK+T  +P+ +   L CG+ TG GA      V   S+   +           
Sbjct: 149 ALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALL 208
Query: 221 XXRLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
             ++  AS II VDI   + E+ K+ G T  IN  T
Sbjct: 209 AAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT 244

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 84/242 (34%), Gaps = 32/242 (13%)
Query: 17  KAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIF 75
           KAA+     +PL             E+ ++I    +CH+D     +  D P  P LP+I 
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTD--LHAAHGDWPVKPKLPLIP 59
Query: 76  XXXXXXXXXXXXXXXXXXXXRDLV-LPIFHRDCGECRDCKSSKSNTCS-KFGRGYRPNMP 133
                                D V +P  +  CG C  C S +   C  +   GY  +  
Sbjct: 60  GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-- 117
Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGVG 192
                                  + EY      +VVKI  ++    A  + C GV+T   
Sbjct: 118 ---------------------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY-- 154
Query: 193 AAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGITDFI 252
            A KV G + G  VAI+             +      ++ VDI  EK E+ K+ G    +
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVV 213
Query: 253 NP 254
           NP
Sbjct: 214 NP 215

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 84/242 (34%), Gaps = 32/242 (13%)
Query: 17  KAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIF 75
           KAA+     +PL             E+ ++I    +CH+D     +  D P  P LP+I 
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTD--LHAAHGDWPVKPKLPLIP 59
Query: 76  XXXXXXXXXXXXXXXXXXXXRDLV-LPIFHRDCGECRDCKSSKSNTCS-KFGRGYRPNMP 133
                                D V +P  +  CG C  C S +   C  +   GY  +  
Sbjct: 60  GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVD-- 117
Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGVG 192
                                  + EY      +VVKI  ++    A  + C GV+T   
Sbjct: 118 ---------------------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY-- 154
Query: 193 AAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGITDFI 252
            A KV G + G  VAI+             +      ++ VDI  EK E+ K+ G    +
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGFGHVAVQYAK-AMGLNVVAVDIGDEKLELAKELGADLVV 213
Query: 253 NP 254
           NP
Sbjct: 214 NP 215

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 81/247 (32%), Gaps = 32/247 (12%)
Query: 17  KAAICRIPGKPLXXXXXXXXXXKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIF 75
           KAA+ R  GKPL             +I++ I  + +CH+D     +  D P  P  P I 
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTD--LHAAEGDWPVKPNPPFIP 84
Query: 76  XXXXXXXXXXXXXXXXXXXXRDLV-LPIFHRDCGECRDCKSSKSNTC-SKFGRGYRPNMP 133
                                D V +P  +  CG CR C       C  +   GY  N  
Sbjct: 85  GHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCEEQLNTGYSVN-- 142
Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLG-IACLLSCGVSTGVG 192
                                  F EY V D   V  +  +I    IA +L  GV+  V 
Sbjct: 143 ---------------------GGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--VY 179
Query: 193 AAWKVAGVEVGSTVAIFXXXXXXXXXXXXXRLNRASKIIGVDINPEKFEIGKKFGITDFI 252
              KV   + G  V I              R      +  VDI+  K ++ ++ G T  +
Sbjct: 180 KGLKVTDTKPGDWVVISGIGGLGHMAVQYARA-MGLNVAAVDIDDRKLDLARRLGATVTV 238
Query: 253 NPATCGD 259
           N  T  D
Sbjct: 239 NAKTVAD 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	267
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	1e-131
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-129
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-128
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	1e-128
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-126
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-106
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	5e-93
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	5e-55
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	3e-47
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-44
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	5e-44
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	8e-43
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	8e-43
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-42
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	6e-42
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-39
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	9e-39
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-38
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	2e-38
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-38
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	3e-37
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	4e-37
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-34
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	2e-34
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	5e-33
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	7e-27
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-25
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	8e-22
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-19
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-19
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	5e-19
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-18
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	3e-18
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-17
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	2e-16
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	2e-15
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	5e-13
3gms_A	340	Putative NADPH:quinone reductase; structural genom	2e-11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	7e-11
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	9e-11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	2e-09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	7e-09
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	9e-09
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	1e-08
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-08
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-08
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-08
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	6e-08
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-07
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-06
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	4e-06
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	9e-06
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	3e-05
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	4e-05
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	4e-05
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	6e-05
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-04
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	3e-04
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	5e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  374 bits (964), Expect = e-131
 Identities = 126/256 (49%), Positives = 161/256 (62%), Gaps = 4/256 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL IEEIEV PPKA E+RIKI+ T++CH+D      S   P+ 
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTL--SGADPEG 58

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PVI GH   G+VESVGE V ++K  D V+P++   CGEC+ C + K+N C K      
Sbjct: 59  CFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 118

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             +  DGTSRF   KG  I H++  S+F+EY+VV    V KI P  PL   CLL CG+ST
Sbjct: 119 KGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGIST 177

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GAA   A +E GS  A+FGLG VGLAV  G ++  AS+IIGVDIN +KF   K+FG T
Sbjct: 178 GYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT 237

Query: 250 DFINPATCGDKTVSQV 265
           + INP     K + +V
Sbjct: 238 ECINPQDF-SKPIQEV 252

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  369 bits (950), Expect = e-129
 Identities = 114/260 (43%), Positives = 147/260 (56%), Gaps = 9/260 (3%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
            GKVI+CKAAI    G PL IEEIEV PPKA E+RI+++ T +C +D+          K 
Sbjct: 3   QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK---KKA 59

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PV+ GHE  G+VESVG  V   K  D V+P F   C  C+ C S  +N C K      
Sbjct: 60  LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 130 PN----MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
           P     +  D TSRF   KG  I+HF+ +SSF++Y+VV   ++ ++     L   CL+ C
Sbjct: 120 PTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGC 178

Query: 186 GVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
           G S+G GAA   A V  GST A+FGLG VGL+   G ++  AS+II +DIN EKF   K 
Sbjct: 179 GFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA 238

Query: 246 FGITDFINPATCGDKTVSQV 265
            G TD +NP    DK V  V
Sbjct: 239 LGATDCLNPREL-DKPVQDV 257

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  367 bits (944), Expect = e-128
 Identities = 120/256 (46%), Positives = 152/256 (59%), Gaps = 6/256 (2%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGK I CKAA+   P KPL +E I V PPKA E+RIKIL + +C SD +       +P  
Sbjct: 4   AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVL--KEIIPS- 60

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PVI GHEAVGVVES+G  V  VK  D V+P+F   CG CR CKSS SN C K   G +
Sbjct: 61  KFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 120

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             +  D TSRF   +G  I++ +  S+FTEY+VV    V KI P  PL  +CL+ CG +T
Sbjct: 121 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFAT 178

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GAA   A V  GST A+FGLG VG +   G +   AS+IIGV  + +KF    + G T
Sbjct: 179 GYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 238

Query: 250 DFINPATCGDKTVSQV 265
           + +NP    DK + +V
Sbjct: 239 ECLNPKDY-DKPIYEV 253

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  367 bits (944), Expect = e-128
 Identities = 126/256 (49%), Positives = 157/256 (61%), Gaps = 4/256 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
            GKVI+CKAA+     KPLVIEEIEV+ P A EIRIKI+ T +CH+D+          K 
Sbjct: 3   VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHL--FEGKHKD 60

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PV+ GHE  G+VESVG  V E +  + V+P+F   CGECR C+S K+N C K      
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
           P++     +RF   KG  +  FL  S+F++Y+VV+   V KI P  PL   CLL CGVST
Sbjct: 121 PDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVST 179

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G GAA   A VE GST A+FGLGAVGLA   G     A +II VD+NP+KFE  K FG T
Sbjct: 180 GFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT 239

Query: 250 DFINPATCGDKTVSQV 265
           DF+NP     + +SQV
Sbjct: 240 DFVNPNDH-SEPISQV 254

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  363 bits (933), Expect = e-126
 Identities = 126/256 (49%), Positives = 159/256 (62%), Gaps = 5/256 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP  IEE+EV PPKA E+RIK++ T +C SD      S  L   
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVV--SGTLVT- 59

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
           PLPVI GHEA G+VES+GE V  V+  D V+P+F   CG+CR CK  + N C K      
Sbjct: 60  PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMP 119

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
               +DGTSRF   +G  IHHFL  S+F++Y+VVD   V KI    PL   CL+ CG ST
Sbjct: 120 RGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFST 178

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           G G+A KVA V  GST A+FGLG VGL+V  G +   A++IIGVDIN +KF   K+ G T
Sbjct: 179 GYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238

Query: 250 DFINPATCGDKTVSQV 265
           + +NP     K + +V
Sbjct: 239 ECVNPQDY-KKPIQEV 253

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  310 bits (797), Expect = e-106
 Identities = 75/250 (30%), Positives = 121/250 (48%), Gaps = 13/250 (5%)

Query: 12  KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPL 71
           ++    AA+    G    ++ +++  P+  E+ +K++ T +CH+D+         P  PL
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVR--DQKYPV-PL 59

Query: 72  PVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----GRG 127
           P + GHE  G++E++G  V E++  D V+  +   CG+C  C +     CS+F      G
Sbjct: 60  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYG-YCGKCTQCNTGNPAYCSEFFGRNFSG 118

Query: 128 YRPNMPRDGTSRFREL-KGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
                  +G        +G V  HF   SSF  Y++    + VK+T  +P+ +   L CG
Sbjct: 119 ADS----EGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCG 174

Query: 187 VSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF 246
           + TG GA      V   S+   +G GAVGL+    A++  AS II VDI   + E+ K+ 
Sbjct: 175 IQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL 234

Query: 247 GITDFINPAT 256
           G T  IN  T
Sbjct: 235 GATHVINSKT 244

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  278 bits (713), Expect = 5e-93
 Identities = 66/258 (25%), Positives = 110/258 (42%), Gaps = 21/258 (8%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           ++  A +     +PLV +E E+       I ++IL   +C SDV  ++   + P++PLP+
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRG--EDPRVPLPI 73

Query: 74  IFGHEAVGVVESVGEYV-----EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY 128
           I GHE  G V  V         E +K  DL++      CGEC  CK SK        + Y
Sbjct: 74  ILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY 133

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THVVKITPHIPLGIACLLSCGV 187
             N    G S +  L+G           ++ + V+D  T V+K++    L +  +  C  
Sbjct: 134 GIN---RGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSG 180

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
           +T   A  +      G TV I G G +GL     AR   A  +I +  +P + ++ ++ G
Sbjct: 181 ATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 240

Query: 248 ITDFINPATCGDKTVSQV 265
               +N      +   + 
Sbjct: 241 ADLTLNRRETSVEERRKA 258

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  179 bits (457), Expect = 5e-55
 Identities = 55/243 (22%), Positives = 90/243 (37%), Gaps = 22/243 (9%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA      G   V+ +I    P   EI +K+    LCHSD+             LP+  G
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTC--SKFGRGYRPNMPR 134
           HE VG V  +GE V      D V       CG C  C   + N C  +       P +  
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI-PLGIACLLSCGVSTGVGA 193
            G+                     EY +VD    +     + P+  A L   G++     
Sbjct: 122 PGS-------------------MAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAI 162

Query: 194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN 253
           +  +  +  GST  + G+G +G    +  R   A+++I VD++ ++  + ++ G    + 
Sbjct: 163 SRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVK 222

Query: 254 PAT 256
              
Sbjct: 223 SGA 225

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  160 bits (406), Expect = 3e-47
 Identities = 56/246 (22%), Positives = 99/246 (40%), Gaps = 32/246 (13%)

Query: 17  KAAICRIPGKPLVIEEIEV-EPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVI 74
           KAA      KPL IE+++       +++ ++I    +CH+D+   +    +L +  LP  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG-RGYRPNMP 133
            GHE VG +E V E VE +++ D V+       G C  C++ +   C      G      
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLN---- 132

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI---ACLLSCGVSTG 190
            DG                    F E+       V+K+   I          L+    T 
Sbjct: 133 IDGG-------------------FAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITA 173

Query: 191 VGAAWKVAGVEV--GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
             A  K A   +  G+ VAI G+G +G    +  ++   + +I +D+  EK ++ ++ G 
Sbjct: 174 YRAV-KKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA 232

Query: 249 TDFINP 254
              ++ 
Sbjct: 233 DHVVDA 238

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  151 bits (384), Expect = 3e-44
 Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 29/244 (11%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+ +   +PL IE++ +  P+  E+ I+I    +C +D+  WK         LP+I G
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSK-FGRGYRPNMPRD 135
           HE  G +  VGE + +VK+ D V+         CR C+  K N C      G       +
Sbjct: 65  HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQT----TN 119

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA-- 193
           G                    F+EY +V  +  +     +    A  L+   +T +GA  
Sbjct: 120 G-------------------GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIR 160

Query: 194 -AWKVAGVEVGSTVAIFGLGAVG-LAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF 251
            A           V + G+G +    +     L +   I+G+  + +  +   + G    
Sbjct: 161 QALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYV 220

Query: 252 INPA 255
               
Sbjct: 221 SEMK 224

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  151 bits (383), Expect = 5e-44
 Identities = 63/248 (25%), Positives = 98/248 (39%), Gaps = 32/248 (12%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK------SSTDLPKLP 70
           +A      GKPL ++EI V  PK  ++ IK+    +CHSDV   +         +   + 
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSK-FGRGYR 129
           LPV  GHE  G +E VG+ V    + DLV     +  G C  C+  + + C      G  
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
                DG                   ++ EY +V     +     +    A  L+C   T
Sbjct: 122 ----FDG-------------------AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGIT 158

Query: 190 GVGAAWKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
              A  + A ++   T+ + G  G +G    + A+    + IIGVD+  E  E  K+ G 
Sbjct: 159 TYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 217

Query: 249 TDFINPAT 256
              IN + 
Sbjct: 218 DYVINASM 225

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  148 bits (375), Expect = 8e-43
 Identities = 67/249 (26%), Positives = 101/249 (40%), Gaps = 42/249 (16%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIF 75
            A +   PG    + E++V  P   E+ IK+L TS+C +D+  ++ +     ++  P I 
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM--- 132
           GHE  G V  +G  VE ++  D V    H  CG+C  C+  + + C         N    
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------QNTKIF 117

Query: 133 --PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGV 187
               DG                    F EY+VV   ++ K    IP   A L   L   V
Sbjct: 118 GVDTDGV-------------------FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
            T       +AG   G +V I G G +GL     A+ + A  +I  + +  + E+ KK G
Sbjct: 159 DT------VLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212

Query: 248 ITDFINPAT 256
               INP  
Sbjct: 213 ADYVINPFE 221

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  148 bits (376), Expect = 8e-43
 Identities = 53/245 (21%), Positives = 90/245 (36%), Gaps = 36/245 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA      G  + +  + +  P   ++ +K+    +C +D               PV  G
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPSTP---PVTLG 80

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPRD 135
           HE  G+V   G  V ++     +    +  CG C  C++ + N C      G      RD
Sbjct: 81  HEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGI----HRD 136

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTGVG 192
           G                    F EY +V      +I   +          L+C +     
Sbjct: 137 G-------------------GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL----- 172

Query: 193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
               ++G++ GSTVAI G G +GL   + ARL  A+ +I       K  + ++ G T  +
Sbjct: 173 HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATV 232

Query: 253 NPATC 257
           +P+  
Sbjct: 233 DPSAG 237

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  147 bits (373), Expect = 1e-42
 Identities = 58/249 (23%), Positives = 88/249 (35%), Gaps = 42/249 (16%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK-LPLPVIF 75
           +A     P + L + +  V  P   EI +++   S+C +D+  WK        +  P++ 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM--- 132
           GHE  GVVE+VG  V   +  D V    H  C  C  C++   + C         N    
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVC--------LNTQIL 113

Query: 133 --PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGV 187
              RDG                    F EY VV   +       +P  +A +       V
Sbjct: 114 GVDRDGG-------------------FAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV 154

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
                          G +V I G G +GL  A   R + A  I+  D NP +    + + 
Sbjct: 155 -----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA 209

Query: 248 ITDFINPAT 256
               +NP  
Sbjct: 210 -DRLVNPLE 217

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  145 bits (369), Expect = 6e-42
 Identities = 55/250 (22%), Positives = 91/250 (36%), Gaps = 45/250 (18%)

Query: 17  KAAICRIPGKPLVIEEIEV-EPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIF 75
           K+ +    G  + + E  + E     E+R+KI  + LC SD+     +        P+  
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKN---GAHYYPITL 57

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM--- 132
           GHE  G +++VG  V+++   D V  +    C  C +C     + C              
Sbjct: 58  GHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQC--------AKYDFI 109

Query: 133 --PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGV 187
              RDG                    F EY VV   +V  +   +P+        ++ G+
Sbjct: 110 GSRRDGG-------------------FAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL 150

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
                 A+ +A       V I G G +GL   + A    A  +  +DI+ EK  + K FG
Sbjct: 151 -----HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFG 205

Query: 248 ITDFINPATC 257
                N +  
Sbjct: 206 AMQTFNSSEM 215

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  139 bits (353), Expect = 4e-39
 Identities = 59/275 (21%), Positives = 84/275 (30%), Gaps = 51/275 (18%)

Query: 5   SASPKAGKVIRCKAAICRIPGKPLVIEEIEV-EPPKAWEIRIKILCTSLCHSDV-----T 58
                 GK+    + + R P   + +EE+      K  EI IK+    +C SDV      
Sbjct: 21  GPKDIEGKLTWLGSKVWRYPE--VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTD 78

Query: 59  FWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKER------DLVLPIFHRDCGECRD 112
                        PV  GHE  GVV   G      +        + V       CG CR 
Sbjct: 79  EEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRP 138

Query: 113 CKSSKSNTCSKF-GRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI 171
           C     N C      G+      DG                    F EY  VD  +   +
Sbjct: 139 CAEGFPNHCENLNELGF----NVDGA-------------------FAEYVKVDAKYAWSL 175

Query: 172 -------TPHIPLGIACL---LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEG 221
                            L    S   +       +  G+  G  V I G G +GLA    
Sbjct: 176 RELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGLAAVAI 232

Query: 222 ARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT 256
            +   ASK+I  + +  +  + K+ G    I+P  
Sbjct: 233 LKHAGASKVILSEPSEVRRNLAKELGADHVIDPTK 267

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  137 bits (348), Expect = 9e-39
 Identities = 51/252 (20%), Positives = 92/252 (36%), Gaps = 47/252 (18%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS-STDLPKLPLPVIF 75
            + +   PG  L +E   +  P   E+ +++    +C SDV +W+        +  P++ 
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 76  GHEAVGVVESVGEYVEEVKERDLVL--PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM- 132
           GHEA G VE VG  V+ +K  D V   P           CK  + N          P++ 
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAP--RENDEFCKMGRYNLS--------PSIF 117

Query: 133 -----PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LS 184
                P DG                       +   +     K+  ++      L   LS
Sbjct: 118 FCATPPDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLS 158

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
            G+      A +  GV +G  V + G G +G+     A+   A++++  D++  +    K
Sbjct: 159 VGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 213

Query: 245 KFGITDFINPAT 256
           + G    +  + 
Sbjct: 214 EIGADLVLQISK 225

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  136 bits (345), Expect = 2e-38
 Identities = 73/246 (29%), Positives = 101/246 (41%), Gaps = 42/246 (17%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIF 75
           KAA+ R  G PL I+E+ V  P   ++++KI  + +CH+D+       D P  P LP I 
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADG--DWPVKPTLPFIP 61

Query: 76  GHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSK-FGRGYRPNMP 133
           GHE VG V +VG  V  VKE D V +P  +  CG C  C       C K    GY     
Sbjct: 62  GHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGY----S 117

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGVG 192
            +G                    + EY V D  +V  +   +       + C GV+    
Sbjct: 118 VNGG-------------------YGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--Y 156

Query: 193 AAWKVAGVEVGSTVAIFGLG-----AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
              KV     G  V I G+G     AV  A A G R      +  VDI+  K  + ++ G
Sbjct: 157 KGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLR------VAAVDIDDAKLNLARRLG 210

Query: 248 ITDFIN 253
               +N
Sbjct: 211 AEVAVN 216

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  136 bits (345), Expect = 2e-38
 Identities = 52/270 (19%), Positives = 88/270 (32%), Gaps = 45/270 (16%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEP-PKAWEIRIKILCTSLCHSDVTF 59
           M + ++    G     +  +  I      +E ++     K  E+ + +  T +C SDV F
Sbjct: 1   MASSASKTNIGVFTNPQHDL-WISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHF 59

Query: 60  WKS-STDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKS 118
           WK        +    + GHE+ G V +V   V+ +K  D V       C  C  C + + 
Sbjct: 60  WKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRY 119

Query: 119 NTCSKFGRGYRPNM------PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172
           N C          +      P  G                       Y         KI 
Sbjct: 120 NGC--------ERVDFLSTPPVPGL-------------------LRRYVNHPAVWCHKI- 151

Query: 173 PHIPLGIACL---LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASK 229
            ++      +   LS  +     A  + AGV +G  V I G G +GL     A+   A  
Sbjct: 152 GNMSYENGAMLEPLSVAL-----AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACP 206

Query: 230 IIGVDINPEKFEIGKKFGITDFINPATCGD 259
           ++  DI+  + +  K+       +      
Sbjct: 207 LVITDIDEGRLKFAKEICPEVVTHKVERLS 236

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  135 bits (343), Expect = 3e-38
 Identities = 79/249 (31%), Positives = 109/249 (43%), Gaps = 42/249 (16%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIF 75
           KAA+     +PL I+E+E       E+ ++I    +CH+D+       D P  P LP+I 
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHG--DWPVKPKLPLIP 59

Query: 76  GHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSK-FGRGYRPNMP 133
           GHE VG+VE VG  V  +K  D V +P  +  CG C  C S +   C      GY     
Sbjct: 60  GHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGY----S 115

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGVG 192
            DG                    + EY      +VVKI  ++    A  + C GV+T   
Sbjct: 116 VDGG-------------------YAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--Y 154

Query: 193 AAWKVAGVEVGSTVAIFGLG-----AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
            A KV G + G  VAI+G+G     AV  A A G        ++ VDI  EK E+ K+ G
Sbjct: 155 KALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLN------VVAVDIGDEKLELAKELG 208

Query: 248 ITDFINPAT 256
               +NP  
Sbjct: 209 ADLVVNPLK 217

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  133 bits (337), Expect = 3e-37
 Identities = 66/254 (25%), Positives = 96/254 (37%), Gaps = 43/254 (16%)

Query: 16  CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVI 74
            K  I       L  ++I V  PKA E+ I +  + +CH+D+  W    D P  + LP++
Sbjct: 6   QKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHG--DWPLPVKLPLV 63

Query: 75  FGHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSK-FGRGYRPNM 132
            GHE  GVV  +GE V+  K  D   +   +  C  C  C+    + C      GY    
Sbjct: 64  GGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGY---- 119

Query: 133 PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVSTGV 191
             DG+                   F +Y+  D      I     L     + C G++   
Sbjct: 120 THDGS-------------------FQQYATADAVQAAHIPQGTDLAQVAPILCAGITV-- 158

Query: 192 GAAWKVAGVEVGSTVAIFGLG------AVGLAVAEGARLNRASKIIGVDINPEKFEIGKK 245
             A K A +  G  VAI G        AV  A A G R      ++G+D    K E+ + 
Sbjct: 159 YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYR------VLGIDGGEGKEELFRS 212

Query: 246 FGITDFINPATCGD 259
            G   FI+     D
Sbjct: 213 IGGEVFIDFTKEKD 226

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  133 bits (337), Expect = 4e-37
 Identities = 54/260 (20%), Positives = 91/260 (35%), Gaps = 38/260 (14%)

Query: 17  KAAICRIPGKPLVIEEIEV-EPPKAWEIRIKILCTSLCHSDVTFWK---SSTDLPKLPLP 72
           KA I + P   + +++++  +     +I+I+ +   +C +D        + + LPK    
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 73  VIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM 132
           ++ GHEA+GVVE          + DLV+P+  R CG CR+C   + + C     G     
Sbjct: 62  LVLGHEAIGVVEES---YHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 133 PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI--------PLGI---AC 181
             DG                      E+   D  ++VKI   I        PL     + 
Sbjct: 119 KMDGF-------------------MREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 182 LLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
                V   V       G      V + G G +G+      R       +     P + E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 242 IGKKFGIT-DFINPATCGDK 260
                    ++ N +   DK
Sbjct: 220 QTVIEETKTNYYNSSNGYDK 239

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  126 bits (319), Expect = 1e-34
 Identities = 61/255 (23%), Positives = 102/255 (40%), Gaps = 36/255 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS-STDLPKLPLPVIF 75
            +A+       L +E+  +  PK  E+ +++    +C SDV +++        +  P++ 
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 76  GHEAVGVVESVGEYVEEVKERDLVL--PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           GHEA G V  VG+ V+ +K+ D V   P     C  C+ CK  K N C      +    P
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVP--CRRCQFCKEGKYNLCPD--LTFCATPP 120

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGVSTG 190
            DG                       Y V       K+  ++ L    L   LS GV   
Sbjct: 121 DDGN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV--- 158

Query: 191 VGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
              A + AGV++G+TV + G G +GL     A+   A  ++    +P + E+ K  G   
Sbjct: 159 --HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADV 215

Query: 251 FINPATCGDKTVSQV 265
            +      ++  S +
Sbjct: 216 TLVVDPAKEEESSII 230

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  126 bits (318), Expect = 2e-34
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 39/257 (15%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIR-----IKILCTSLCHSDVTFWKSSTDLPKLPL 71
           K       GK   +  IE E P           ++ L  + C SD+              
Sbjct: 2   KGFAMLSIGK---VGWIEKEKPA---PGPFDAIVRPLAVAPCTSDI--HTVFEGAIGERH 53

Query: 72  PVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN 131
            +I GHEAVG V  VG  V++ K  D V+           + +            G++ +
Sbjct: 54  NMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFS 113

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVV---DITHVVKITPHIPLGIACLLSCGVS 188
             +DG                    F E+  V   D+     +   IPL  A ++   ++
Sbjct: 114 NVKDGV-------------------FGEFFHVNDADMNLA-HLPKEIPLEAAVMIPDMMT 153

Query: 189 TGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI 248
           TG   A ++A +++G TV + G+G VGL    GA    A +I  V       +I  ++G 
Sbjct: 154 TGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA 212

Query: 249 TDFINPATCGDKTVSQV 265
           TD IN        V Q+
Sbjct: 213 TDIINYK--NGDIVEQI 227

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  122 bits (308), Expect = 5e-33
 Identities = 44/252 (17%), Positives = 85/252 (33%), Gaps = 34/252 (13%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIF 75
           KA   +      V+ E     P++ E  ++ L   +C +D           P+    ++ 
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHR--DCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           GHEAVGVV        E++E D+V+P   R    G     +  + +         R  + 
Sbjct: 62  GHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL---LSCGV-ST 189
             G                     +E+      ++V+I P     +  L   +S    + 
Sbjct: 120 AHGY-------------------MSEFFTSPEKYLVRI-PRSQAELGFLIEPISITEKAL 159

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLN--RASKIIGV---DINPEKFEIGK 244
               A + A     S+  + G G++GL      +++      +  +   D      +I +
Sbjct: 160 EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE 219

Query: 245 KFGITDFINPAT 256
           +   T   +  T
Sbjct: 220 ELDATYVDSRQT 231

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  106 bits (267), Expect = 7e-27
 Identities = 63/234 (26%), Positives = 86/234 (36%), Gaps = 38/234 (16%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +K++ T++C SD    +  T        ++ GHE  G V   G  VE ++  DLV   F+
Sbjct: 38  LKVVSTNICGSDQHMVRGRTTAQV---GLVLGHEITGEVIEKGRDVENLQIGDLVSVPFN 94

Query: 105 RDCGECRDCKSSKSNTC--SKFGR-----GYRPNMPRDGTSRFRELKGDVIHHFLNISSF 157
             CG CR CK   +  C      R     GY       G                     
Sbjct: 95  VACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGG-------------------Q 135

Query: 158 TEYSVV---DITHVV---KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL 211
            EY +V   D   +    +      +     LS  + TG   A   AGV  GSTV + G 
Sbjct: 136 AEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGA 194

Query: 212 GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV 265
           G VGLA A  ARL  A+ +I  D+NP +    K  G                Q+
Sbjct: 195 GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL--DTPLHEQI 246

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  103 bits (258), Expect = 1e-25
 Identities = 64/227 (28%), Positives = 93/227 (40%), Gaps = 23/227 (10%)

Query: 45  IKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFH 104
           +K++ T++C SD   ++    +PK     + GHE  G V   G  VE +   DLV   F+
Sbjct: 37  LKVVSTNICGSDQHIYRGRFIVPK---GHVLGHEITGEVVEKGSDVELMDIGDLVSVPFN 93

Query: 105 RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV- 163
             CG CR+CK ++S+ C         N   D  + F                  EY +V 
Sbjct: 94  VACGRCRNCKEARSDVCENNL----VNPDADLGA-FGFDLKGWS------GGQAEYVLVP 142

Query: 164 --DITHVV---KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
             D   +    K      +    L+S  + TG       AGV+ GS V I G G VG   
Sbjct: 143 YADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCA 201

Query: 219 AEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV 265
           A GARL  A+ +I  D NPE+ ++    G    I+          Q+
Sbjct: 202 AAGARLLGAACVIVGDQNPERLKLLSDAGFET-ID-LRNSAPLRDQI 246

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 91.9 bits (229), Expect = 8e-22
 Identities = 61/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +A + R  G P  L + ++ V  P   E+R+++   +L H DV   K     PKLPLP +
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVA-SPKLPLPHV 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G +  GVV++VG  VE     D V+      CG C  C + + N C ++         R
Sbjct: 61  LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQ---ILGEHR 117

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
            GT                   + EY V+   ++     ++    A  +     T    A
Sbjct: 118 HGT-------------------YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----A 154

Query: 195 W----KVAGVEVGSTVAIFGLG------AVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
           W       GV  G  V +   G      A+ +A   GAR      +I    + +K    K
Sbjct: 155 WQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR------VIATAGSEDKLRRAK 208

Query: 245 KFGITDFIN 253
             G  + +N
Sbjct: 209 ALGADETVN 217

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 86.8 bits (215), Expect = 1e-19
 Identities = 47/264 (17%), Positives = 84/264 (31%), Gaps = 55/264 (20%)

Query: 17  KAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDV---------------T 58
            A +      P   + ++++ V      E  + ++ +S+ ++ V                
Sbjct: 44  FAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER 103

Query: 59  FWKSSTDLPKLPLPV-IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSK 117
           + + S    +  LP  + G +  GVV   G  V   +  D V+        E  D  +  
Sbjct: 104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDT 163

Query: 118 SNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL 177
                +   G+  N    G                      E ++V    ++    H+  
Sbjct: 164 MLDPEQRIWGFETN---FGG-------------------LAEIALVKSNQLMPKPDHLSW 201

Query: 178 GIACLLSCGVSTGVGA--AWKVAGVEVGSTVAIFGLG------AVGLAVAEGARLNRASK 229
             A       ST      +   AG++ G  V I+G        A   A+A GA       
Sbjct: 202 EEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGAN------ 255

Query: 230 IIGVDINPEKFEIGKKFGITDFIN 253
            I V  +P+K EI +  G    I+
Sbjct: 256 PICVVSSPQKAEICRAMGAEAIID 279

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 85.4 bits (212), Expect = 2e-19
 Identities = 47/247 (19%), Positives = 75/247 (30%), Gaps = 46/247 (18%)

Query: 17  KAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIF 75
           +           L + E  V      +I ++ L  SL + D    ++      L  P + 
Sbjct: 29  QEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMG-LDLAFPFVP 87

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
             +  GVVE+VG+ V   +  D V+  F     +     + ++      G          
Sbjct: 88  ASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLG------GAHP 141

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
           G                     +EY V+     V     +    A  L C   T    AW
Sbjct: 142 GV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AW 178

Query: 196 ----KVAGVEVGSTVAIFGLGAVG-----LAVAEGARLNRASKIIGVDINPEKFEIGKKF 246
               +   +  G  V + G G V      +A A GA       +I    + EK +     
Sbjct: 179 FALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAE------VIVTSSSREKLDRAFAL 232

Query: 247 GITDFIN 253
           G    IN
Sbjct: 233 GADHGIN 239

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 84.2 bits (209), Expect = 5e-19
 Identities = 65/266 (24%), Positives = 103/266 (38%), Gaps = 44/266 (16%)

Query: 1   MNNKSASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFW 60
           + + S   KAG  I+   A      +PL   +I    P   +++I+I    +CHSD+   
Sbjct: 10  LESTSLYKKAGLKIKAVGA--YSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQV 67

Query: 61  KSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSN 119
           +S  +      P + GHE VG V +VG+ VE+    DLV +      C  C +C+    N
Sbjct: 68  RS--EWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLEN 125

Query: 120 TCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH--IP 176
            C      Y  N P  D         G           +++  VV   +V++I  H    
Sbjct: 126 YCDHMTGTY--NSPTPDEPGH---TLG----------GYSQQIVVHERYVLRI-RHPQEQ 169

Query: 177 LGIACLLSC-GVSTGVGAAW---KVAGVEVGSTVAIFGLG-----AVGLAVAEGARLNRA 227
           L     L C G++T     +   +      G  V + G+G      + LA A GA     
Sbjct: 170 LAAVAPLLCAGITT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA----- 219

Query: 228 SKIIGVDINPEKFEIGKKFGITDFIN 253
             ++    +  K E  K  G  + +N
Sbjct: 220 -HVVAFTTSEAKREAAKALGADEVVN 244

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 83.4 bits (207), Expect = 1e-18
 Identities = 63/265 (23%), Positives = 98/265 (36%), Gaps = 48/265 (18%)

Query: 5   SASPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST 64
           S SP+    ++      R     L             ++R K+L   +CHSD+   K+  
Sbjct: 6   SKSPEEEHPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKN-- 63

Query: 65  DLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSK 123
           D      P++ GHE VG V  VG  V++V   D V +      C  C  C +   N C K
Sbjct: 64  DWGFSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPK 123

Query: 124 FGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACL 182
               Y       DGT  +    G           ++ + V +  ++++   ++PL     
Sbjct: 124 MILTY--ASIYHDGTITY----G----------GYSNHMVANERYIIRFPDNMPLDGGAP 167

Query: 183 LSC-GVST-------GVGAAWKVAGVEVGSTVAIFGLG-----AVGLAVAEGARLNRASK 229
           L C G++        G+           G  + I GLG     AV  A A G+      K
Sbjct: 168 LLCAGITVYSPLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGS------K 213

Query: 230 IIGVDINPEKF-EIGKKFGITDFIN 253
           +  +  +P K  E  K FG   F+ 
Sbjct: 214 VTVISTSPSKKEEALKNFGADSFLV 238

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 82.3 bits (204), Expect = 3e-18
 Identities = 56/241 (23%), Positives = 89/241 (36%), Gaps = 38/241 (15%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83
             +     +         ++ I IL   +CHSD+    S  +  +   P+I GHE  G++
Sbjct: 13  KDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYS--EWKEGIYPMIPGHEIAGII 70

Query: 84  ESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRE 142
           + VG+ V++ K  D+V +  F   C  C+ CK  +   C+K    Y              
Sbjct: 71  KEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTY--------DCLDSF 122

Query: 143 LKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVST-------GVGAA 194
              +          ++   VVD  +V+ +  + PL     L C G++T        V   
Sbjct: 123 HDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTKG 177

Query: 195 WKVAGVEVGSTVAIFGLG--AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI 252
            KV     G      GLG  AV  AVA GA      ++     N  K +     G+  F 
Sbjct: 178 TKVGVAGFG------GLGSMAVKYAVAMGA------EVSVFARNEHKKQDALSMGVKHFY 225

Query: 253 N 253
            
Sbjct: 226 T 226

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 37/269 (13%), Positives = 71/269 (26%), Gaps = 52/269 (19%)

Query: 9   KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDV----------- 57
           +A      K    +   K L + E+ +      E+ + ++ +S+ ++ V           
Sbjct: 31  RAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTF 90

Query: 58  -----TFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRD 112
                   +            + G +  GVV   G  V   K  D V+            
Sbjct: 91  HFLKQNARQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDE-QEP 149

Query: 113 CKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT 172
                    ++            G                      EY VV  + ++   
Sbjct: 150 ATHGDGMLGTEQRAWGFE--TNFGG-------------------LAEYGVVRASQLLPKP 188

Query: 173 PHIPLGIACLLSCGVSTGVGA--AWKVAGVEVGSTVAIFGLG------AVGLAVAEGARL 224
            H+    A +      T      + + A ++ G  V I+G        A+      G   
Sbjct: 189 AHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGI- 247

Query: 225 NRASKIIGVDINPEKFEIGKKFGITDFIN 253
                 + V  + +K    +  G    IN
Sbjct: 248 -----PVAVVSSAQKEAAVRALGCDLVIN 271

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 54/212 (25%), Positives = 77/212 (36%), Gaps = 35/212 (16%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83
           P   L      +      ++ I+I+C  +CH+D+   K+  DL     P++ GHE VG V
Sbjct: 18  PSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKN--DLGMSNYPMVPGHEVVGEV 75

Query: 84  ESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFR 141
             VG  V +    D+V +      CG C  C+      C K    Y  N    +G     
Sbjct: 76  VEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY--NDVYINGQPTQ- 132

Query: 142 ELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA-----AWK 196
              G           F + +VV    VVKI   + +  A  L C    GV        + 
Sbjct: 133 ---G----------GFAKATVVHQKFVVKIPEGMAVEQAAPLLCA---GVTVYSPLSHFG 176

Query: 197 VAGVEVGSTVAIFGLG-----AVGLAVAEGAR 223
           +     G    I GLG      V +A A G  
Sbjct: 177 LKQ--PGLRGGILGLGGVGHMGVKIAKAMGHH 206

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 59/243 (24%), Positives = 88/243 (36%), Gaps = 43/243 (17%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVV 83
             K     + + +P    +I IKI    +C SD+           + +P++ GHE VG V
Sbjct: 17  DWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAG--HWGNMKMPLVVGHEIVGKV 74

Query: 84  ESVGEYVE-EVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRF 140
             +G      +K    V +      C EC  CK+     C+KF   Y  + P  DG    
Sbjct: 75  VKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTY--SQPYEDGYVSQ 132

Query: 141 RELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC-GVST-------GVG 192
               G           +  Y  V    VV I  +IP  +A  L C G++        G G
Sbjct: 133 ----G----------GYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG 178

Query: 193 AAWKVAGVEVGSTVAIFGLG--AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
              KV  V +G      G+G     ++ A GA      +   +  +  K E   K G   
Sbjct: 179 PGKKVGIVGLG------GIGSMGTLISKAMGA------ETYVISRSSRKREDAMKMGADH 226

Query: 251 FIN 253
           +I 
Sbjct: 227 YIA 229

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 66.9 bits (164), Expect = 5e-13
 Identities = 43/252 (17%), Positives = 75/252 (29%), Gaps = 72/252 (28%)

Query: 17  KAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------- 66
           +A +    G P   + ++ +E+   +  ++R+K+L   +  SD+                
Sbjct: 28  RALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDI--------NMIQGNYG 79

Query: 67  PKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGR 126
               LP + G+E V  V +VG  V  +K  D V+P                         
Sbjct: 80  LLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPA------------------------ 115

Query: 127 GYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG 186
                    GT                   +   +V     ++++   IPL  A  L   
Sbjct: 116 -----NAGLGT-------------------WRTEAVFSEEALIQVPSDIPLQSAATLGVN 151

Query: 187 VSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE---- 241
             T          ++ G +V        VG AV + A      + I V  +    +    
Sbjct: 152 PCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSD 210

Query: 242 IGKKFGITDFIN 253
             K  G    I 
Sbjct: 211 RLKSLGAEHVIT 222

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 46/246 (18%), Positives = 73/246 (29%), Gaps = 65/246 (26%)

Query: 17  KAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           K       G P   L +E   +EP K  E+ +++L   +  SD+    +     ++PLP 
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIP-ITGAYAHRIPLPN 64

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           I G+E VG+VE+VG +V        VLP                                
Sbjct: 65  IPGYEGVGIVENVGAFVSRELIGKRVLP-------------------------------- 92

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193
                                 ++ EY       VV I   I    A  +     T    
Sbjct: 93  -----------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVT 135

Query: 194 AWKVAGVEVGSTVAI------FGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
             +   ++    + +       G     L+     RL      I V  N +  E   + G
Sbjct: 136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRL------IAVTRNNKHTEELLRLG 189

Query: 248 ITDFIN 253
               I+
Sbjct: 190 AAYVID 195

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 30/225 (13%), Positives = 54/225 (24%), Gaps = 64/225 (28%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
            A       +  V            ++ +++   ++  SD                   G
Sbjct: 13  TALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFA--TPWAFLG 67

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
            +  G V +VG  V  ++  D V        G                     P  P  G
Sbjct: 68  TDYAGTVVAVGSDVTHIQVGDRV-------YG---------------AQNEMCPRTPDQG 105

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH--------IPLGIA----CLLS 184
                               F++Y+V       KI           +P GI+     +  
Sbjct: 106 A-------------------FSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKL 146

Query: 185 CGVSTGVGAAWKVAGVEVGSTVAIFG-LGAVG-----LAVAEGAR 223
            G+     +A +         V ++G   A       +    G  
Sbjct: 147 LGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI 191

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 44/272 (16%), Positives = 78/272 (28%), Gaps = 81/272 (29%)

Query: 13  VIRCKAAICRIPGKP---LVIEEIEVEPP--KAWEIRIKILCTSLCHSDVTF-------- 59
           +I  +A +    G+P   L  +  E++       E+ +K L + +  SD+          
Sbjct: 1   MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK 60

Query: 60  WKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSN 119
              +T           G+E +  V  VG  V  ++  D V+                   
Sbjct: 61  PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVI------------------- 101

Query: 120 TCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI 179
                     P+    GT                   +  +++ +    +K+ P+     
Sbjct: 102 ----------PSHVNFGT-------------------WRTHALGNDDDFIKL-PNPAQSK 131

Query: 180 ACLLSCGVSTGVGAAWKV------------AGVEVGSTVAIF--GLGAVGLAVAEGARLN 225
           A     G++   GA   V              +  G    I   G  AVG   ++  +L 
Sbjct: 132 ANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL 191

Query: 226 RASKIIGV----DINPEKFEIGKKFGITDFIN 253
                I V        E     K+ G T  I 
Sbjct: 192 NF-NSISVIRDRPNLDEVVASLKELGATQVIT 222

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 36/243 (14%), Positives = 67/243 (27%), Gaps = 77/243 (31%)

Query: 24  PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVIFGHEAVGV 82
               + +  +++    A +I ++     +   D   WK    +        + G +  GV
Sbjct: 13  KTHSVTLNSVDIPALAADDILVQNQAIGINPVD---WKFIKANPINWSNGHVPGVDGAGV 69

Query: 83  VESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRE 142
           +  VG  V+       V                            Y  ++ R G+     
Sbjct: 70  IVKVGAKVDSKMLGRRVA---------------------------YHTSLKRHGS----- 97

Query: 143 LKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGI----ACLLSCGVSTGVGAAW--- 195
                         F E++V++   V+     +P  +    A  L C + T    AW   
Sbjct: 98  --------------FAEFTVLNTDRVM----TLPDNLSFERAAALPCPLLT----AWQAF 135

Query: 196 KVAGVEVGSTVAIFGLGAVG-----LAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD 250
           +   +     V I G GAV      +    G        +  V        +  K G+  
Sbjct: 136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYV------VDLVS-ASLSQALAAKRGVRH 188

Query: 251 FIN 253
              
Sbjct: 189 LYR 191

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 54.5 bits (132), Expect = 7e-09
 Identities = 45/252 (17%), Positives = 70/252 (27%), Gaps = 79/252 (31%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-------P 67
           KA   +    P  LV  ++E        + + +    +C  D         L        
Sbjct: 23  KAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDY--------LMTKGEYQL 74

Query: 68  KLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG 127
           K+  P + G E  GVV S  E                                    G G
Sbjct: 75  KMEPPFVPGIETAGVVRSAPE------------------------------------GSG 98

Query: 128 YRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGV 187
            +P              GD +  F  I  + E   V  ++++   P +    A  L    
Sbjct: 99  IKP--------------GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANY 144

Query: 188 STGVGAAWKVAGVEVGSTVAIF------GLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
            T   A  +   +  G TV +       G  A+ +A   GA+      +I V       E
Sbjct: 145 HTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAK------VIAVVNRTAATE 198

Query: 242 IGKKFGITDFIN 253
             K  G    + 
Sbjct: 199 FVKSVGADIVLP 210

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 5/85 (5%)

Query: 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
          K  +    G    +  E+  V      E+ IK   T + + +  F      +     P +
Sbjct: 10 KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYF---RKGIYPCEKPYV 66

Query: 75 FGHEAVGVVESVGEYVEEVKERDLV 99
           G EA G V + G+ V   +  D V
Sbjct: 67 LGREASGTVVAKGKGVTNFEVGDQV 91

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 54.2 bits (131), Expect = 1e-08
 Identities = 46/249 (18%), Positives = 73/249 (29%), Gaps = 67/249 (26%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPV 73
            AA+    G P   V EE++V  P   ++R++     +   D          L     P+
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
           + G EA  VVE VG  V +                                         
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTV-------------------------------------- 84

Query: 134 RDGTSRFRELKGD-VIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVS--TG 190
                      G+ V      + ++++  +     ++K+   + L    L    +   T 
Sbjct: 85  -----------GERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTA 133

Query: 191 VGAAWKVAGVEVGSTVAI------FGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK 244
                +   V+ G  V I       G   V  A   GA       +IG     EK E  +
Sbjct: 134 QYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT------VIGTVSTEEKAETAR 187

Query: 245 KFGITDFIN 253
           K G    IN
Sbjct: 188 KLGCHHTIN 196

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 40/221 (18%), Positives = 60/221 (27%), Gaps = 63/221 (28%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLP---KLPL 71
           KA      G P  L + +      +  ++ IK+   SL   D      S  +    K  L
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 72  PVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN 131
           P   G++  G V  +G  V  V   D V                         G      
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKV------------------------MG---IAG 100

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGV 191
            P                       + EY       ++         ++ L +  + T  
Sbjct: 101 FPDHP------------------CCYAEYVCASPDTII----QKLEKLSFLQAASLPTAG 138

Query: 192 GAAWKV---AGVEVGSTVAIFG-LGAVG-----LAVAEGAR 223
             A +    A V+ G  V I    G VG     LA  +G  
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTT 179

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 41/246 (16%), Positives = 65/246 (26%), Gaps = 66/246 (26%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
                   G P  L   E     P   EI+++     +   D          P LP    
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPS--G 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            G EA G+V  VG  V+ +K                                        
Sbjct: 61  LGTEAAGIVSKVGSGVKHIKA--------------------------------------- 81

Query: 135 DGTSRFRELKGD-VIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA--CLLSCGVSTGV 191
                     GD V++    + +++    +       +   I    A    L      G+
Sbjct: 82  ----------GDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLK-----GL 126

Query: 192 GA---AWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
                  K   ++           G VGL   + A+    +K+IG     +K +   K G
Sbjct: 127 TVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKA-LGAKLIGTVGTAQKAQSALKAG 185

Query: 248 ITDFIN 253
               IN
Sbjct: 186 AWQVIN 191

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 33/83 (39%)

Query: 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           AA+      P V+ ++    P   ++ ++I  +     D           + PLP I G
Sbjct: 9  IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILG 68

Query: 77 HEAVGVVESVGEYVEEVKERDLV 99
           +  G V +VG  V+  +  D V
Sbjct: 69 MDLAGTVVAVGPEVDSFRVGDAV 91

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 49/252 (19%), Positives = 77/252 (30%), Gaps = 78/252 (30%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPV 73
           K       G P  L   + E E P    + ++     L   D  +    + L P   LP 
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYY---RSGLYPAPFLPS 59

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
             G E  GVVE+VG+ V   K                                       
Sbjct: 60  GLGAEGAGVVEAVGDEVTRFKV-------------------------------------- 81

Query: 134 RDGTSRFRELKGD-VIHHFLNISSFTEYSVVDITHVVKITPHIPLGIA--CLLSCGVSTG 190
                      GD V +    + +++E  V+   ++VK+   +    A   +L      G
Sbjct: 82  -----------GDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLK-----G 125

Query: 191 VGA---AWKVAGVEVGSTVAI------FGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
           +       +   V+ G  +         G  A   A A GA+      +IG   +PEK  
Sbjct: 126 LTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK------LIGTVSSPEKAA 179

Query: 242 IGKKFGITDFIN 253
             K  G  + I+
Sbjct: 180 HAKALGAWETID 191

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 35/244 (14%), Positives = 73/244 (29%), Gaps = 61/244 (25%)

Query: 17  KAAICRIPGKP-----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPL 71
           +  +             +  +  V  P   ++ ++     +  SD+  + +    P +  
Sbjct: 25  QKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDI-NYSAGRYDPSVKP 83

Query: 72  PVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN 131
           P   G E +G V ++G                                            
Sbjct: 84  PFDIGFEGIGEVVALGLSA----------------------------------------- 102

Query: 132 MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCG-VSTG 190
                ++R+    G  +  ++   SF EY+VV  +    +    P  +  L+S       
Sbjct: 103 -----SARYTV--GQAV-AYMAPGSFAEYTVVPASIATPVPSVKPEYLTLLVSGTTAYIS 154

Query: 191 VGAAWKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT 249
           +    ++ G+  G  V +    G  G    + ++  +   +IG   + EK    K  G  
Sbjct: 155 LK---ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLGCD 210

Query: 250 DFIN 253
             IN
Sbjct: 211 RPIN 214

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 41/263 (15%), Positives = 68/263 (25%), Gaps = 85/263 (32%)

Query: 17  KAAICRIPGKP--------------LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS 62
           KA +    G                L    I V  P   ++ IK+   S+  SDV F K 
Sbjct: 12  KALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKG 71

Query: 63  STDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCS 122
               P+       G E VG + + G+                                  
Sbjct: 72  QYGQPR-VKGRPAGFEGVGTIVAGGD---------------------------------- 96

Query: 123 KFGRGYRPNMPRDGTSRFRELKGDVIHHFLNIS---SFTEYSVVDITHVVKITPHIPLGI 179
                       +  ++     G  +     +S   S+ EY+V +    + +   +    
Sbjct: 97  ------------EPYAKSL--VGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDED 142

Query: 180 ACLLSCGVSTGVGAAWKV---AGVEVGSTVAI------FGLGAVGLAVAEGARLNRASKI 230
              +     T    A  +      E      +           +GLA  EG R       
Sbjct: 143 GAAMIVNPLT----AIAMFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFR------P 192

Query: 231 IGVDINPEKFEIGKKFGITDFIN 253
           I      E+  + K  G    +N
Sbjct: 193 IVTVRRDEQIALLKDIGAAHVLN 215

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 46.0 bits (110), Expect = 4e-06
 Identities = 48/246 (19%), Positives = 77/246 (31%), Gaps = 64/246 (26%)

Query: 17  KAAICRIPGKP--LVIE-EIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           +A      G P  L +  +I V  PK  ++ IK+    +   +    +S T   K  LP 
Sbjct: 31  RAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYI-RSGTYSRKPLLPY 89

Query: 74  IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP 133
             G +  GV+E+VG+     K+ D V                      S    G      
Sbjct: 90  TPGSDVAGVIEAVGDNASAFKKGDRVF--------------------TSSTISG------ 123

Query: 134 RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGA 193
                                  + EY++     V K+   +       +     T   A
Sbjct: 124 ----------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRA 161

Query: 194 AWKVAGVEVGSTVAI------FGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG 247
               A V+ G +V +       GL A  +A A G +      I+G     E  +I  + G
Sbjct: 162 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLK------ILGTAGTEEGQKIVLQNG 215

Query: 248 ITDFIN 253
             +  N
Sbjct: 216 AHEVFN 221

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 45.3 bits (108), Expect = 9e-06
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-------P 67
          +A +    G    L +    +  P+  E++I++    L   D+        +        
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDL--------MVRQGNIDN 56

Query: 68 KLPLPVIFGHEAVGVVESVGEYVEEVKERDLV 99
              P++ G E  G+VE++G+ V+  +  D V
Sbjct: 57 PPKTPLVPGFECSGIVEALGDSVKGYEIGDRV 88

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 17  KAAICRIPGK---PLVIEEIEVEPP--KAWEIRIKILCTSLCHSDVTFWKS-STDLPKLP 70
           KA     P        + +IE+  P     +I +++   S+   D   +K   +  P   
Sbjct: 24  KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVD---YKVRRSTPPDGT 80

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLV 99
              + G++A G+V +VG  V   +  D V
Sbjct: 81  DWKVIGYDAAGIVSAVGPDVTLFRPGDEV 109

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)

Query: 186 GVSTGVGAAWKVAGVEV--GSTVAIFGLGAVGLAVA-----EGARLNRASKIIGVDINPE 238
           GV   + A     G+    G TV + GLGAVG ++A      GA      +++  D + E
Sbjct: 156 GVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGA------QLLVADTDTE 209

Query: 239 KFEIGKKFGIT 249
           +       G T
Sbjct: 210 RVAHAVALGHT 220

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 28/264 (10%), Positives = 61/264 (23%), Gaps = 89/264 (33%)

Query: 24  PGKPLV--IEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP----------- 70
               L   ++ I+   P   E+ I+I  + L  SD+     + D+               
Sbjct: 14  SSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVT 73

Query: 71  ----------------LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCK 114
                             +  G+E  GVV   G                           
Sbjct: 74  ARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKT--------------- 118

Query: 115 SSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH 174
                  +  G                               +++Y  +     + +   
Sbjct: 119 ------VAAIGGA----------------------------MYSQYRCIPADQCLVLPEG 144

Query: 175 IPLGI-ACLLSCGVSTGVGAAW---KVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASK 229
                 A      ++     A    +   +E  S +        +G  + +    +   K
Sbjct: 145 ATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAAASNLGQMLNQICLKDGI-K 198

Query: 230 IIGVDINPEKFEIGKKFGITDFIN 253
           ++ +    E+ ++ K  G     N
Sbjct: 199 LVNIVRKQEQADLLKAQGAVHVCN 222

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-------PKL 69
          KA + +  G PL + ++     +  E+ +++    L  +D         L        +L
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADH--------LMRLGAYLTRL 53

Query: 70 PLPVIFGHEAVGVVE 84
            P I G E VGVVE
Sbjct: 54 HPPFIPGMEVVGVVE 68

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 41.4 bits (98), Expect = 2e-04
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 17  KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +    +  G P  +VI +  +      E+ ++     +   D+   + S   PK     I
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPK-DASPI 88

Query: 75  FGHEAVGVVESVGEYVEEVKERDLV 99
            G E  G +  VG  V      D V
Sbjct: 89  LGLELSGEIVGVGPGVSGYAVGDKV 113

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 27 PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV 86
                +++  PK  EI +KI   S+   D    K          P + G +A+GVVESV
Sbjct: 19 LFKTFNLDIPEPKVHEILVKIQSISVNPVD---TKQRLMDVS-KAPRVLGFDAIGVVESV 74

Query: 87 GEYVEEVKERDLV 99
          G  V    + D+V
Sbjct: 75 GNEVTMFNQGDIV 87

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 19/100 (19%), Positives = 30/100 (30%), Gaps = 17/100 (17%)

Query: 17  KAAICRIPGKPLVIEEIEV----EPPKAWEIRIKILCTSLCHSDV-------------TF 59
            A +    GK  V+   +           E+ +K+   S+   DV               
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKR 82

Query: 60  WKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKERDLV 99
                 +     P+  G +  GVV   G  V+  K  D V
Sbjct: 83  DPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	267
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.97
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.86
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.47
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.67
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.38
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.25
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.25
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.22
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.21
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.18
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.0
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.86
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	96.81
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.77
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.75
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.73
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.57
2b25_A	336	Hypothetical protein; structural genomics, methyl	96.55
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.53
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.38
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.21
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.08
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.06
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.95
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.84
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.8
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.8
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	95.76
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.44
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.41
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	95.39
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.26
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.23
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.17
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.89
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	94.8
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	94.76
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.69
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	94.67
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	94.67
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	94.67
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.65
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	94.56
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.52
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	94.51
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	94.49
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	94.48
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	94.48
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	94.46
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	94.46
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.45
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.44
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	94.41
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	94.39
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	94.36
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.35
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	94.34
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	94.31
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	94.3
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	94.3
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	94.3
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	94.29
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	94.17
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	94.16
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	94.14
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.13
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.12
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.12
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.11
3imf_A	257	Short chain dehydrogenase; structural genomics, in	94.1
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	94.1
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.09
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	94.09
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	94.09
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.07
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.07
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	94.05
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	94.04
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	94.04
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	93.99
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	93.98
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	93.97
4dqx_A	277	Probable oxidoreductase protein; structural genomi	93.96
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.95
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	93.95
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	93.94
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	93.94
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	93.93
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	93.93
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.9
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	93.9
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	93.88
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.86
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	93.86
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	93.83
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	93.83
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.8
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	93.8
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	93.8
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	93.79
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	93.74
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.74
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	93.74
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.73
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	93.72
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	93.71
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	93.7
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	93.67
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.66
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	93.66
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	93.62
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	93.62
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	93.57
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	93.56
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	93.54
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.53
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	93.51
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	93.51
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	93.47
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	93.43
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	93.42
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.41
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	93.41
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	93.41
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	93.4
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	93.4
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	93.39
3cxt_A	291	Dehydrogenase with different specificities; rossma	93.37
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	93.36
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.34
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	93.34
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.3
1xkq_A	280	Short-chain reductase family member (5D234); parra	93.3
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	93.28
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	93.27
1spx_A	278	Short-chain reductase family member (5L265); paral	93.26
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	93.23
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	93.23
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	93.21
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	93.2
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	93.2
3rih_A	293	Short chain dehydrogenase or reductase; structural	93.18
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	93.15
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	93.14
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	93.1
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.08
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	93.07
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.07
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.01
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.99
1xq1_A	266	Putative tropinone reducatse; structural genomics,	92.99
1xhl_A	297	Short-chain dehydrogenase/reductase family member	92.99
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	92.97
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	92.9
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	92.86
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	92.86
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	92.86
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	92.83
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	92.8
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	92.79
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	92.79
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	92.72
1id1_A	153	Putative potassium channel protein; RCK domain, E.	92.66
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	92.64
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.61
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	92.61
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	92.61
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.61
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.51
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	92.49
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.48
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	92.44
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	92.4
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.34
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	92.31
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	92.31
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	92.3
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	92.3
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.3
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	92.23
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	92.17
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	92.15
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	92.15
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.14
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	92.14
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	92.13
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.13
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	92.11
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.1
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	92.09
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	92.08
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	92.04
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	92.04
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	92.02
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	92.02
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	92.0
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	91.94
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	91.92
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	91.87
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	91.87
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	91.86
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	91.83
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	91.79
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.75
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.72
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	91.69
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.67
1xq6_A	253	Unknown protein; structural genomics, protein stru	91.66
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	91.66
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	91.61
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	91.58
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.57
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	91.56
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	91.54
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.53
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	91.53
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	91.51
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	91.47
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	91.33
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.31
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	91.31
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	91.31
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	91.29
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	91.27
4hb9_A	412	Similarities with probable monooxygenase; flavin,	91.24
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	91.23
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	91.23
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	91.2
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.18
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	91.17
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	91.16
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	91.15
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	91.13
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	91.12
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	91.05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	91.03
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.03
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	91.01
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	90.97
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	90.94
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	90.92
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	90.91
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	90.91
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	90.89
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	90.88
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	90.83
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	90.83
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	90.81
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	90.78
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	90.75
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	90.73
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	90.69
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.68
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	90.67
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	90.63
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	90.63
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	90.62
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	90.6
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	90.58
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	90.55
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	90.5
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	90.49
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	90.47
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	90.45
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.45
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.35
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	90.25
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	90.24
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	90.16
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	90.14
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	90.07
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	90.06
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.05
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.05
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	90.03
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	89.94
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	89.92
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	89.92
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	89.75
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.75
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	89.74
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	89.71
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	89.66
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	89.62
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	89.6
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	89.58
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	89.46
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.4
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	89.4
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	89.38
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	89.34
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	89.28
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	89.23
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	89.23
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	89.2
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	89.19
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	89.18
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	89.16
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	89.14
3l07_A	285	Bifunctional protein fold; structural genomics, ID	89.07
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	89.06
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	89.0
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	88.98
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	88.95
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	88.89
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	88.89
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	88.86
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	88.76
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	88.74
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	88.74
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	88.73
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	88.73
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	88.69
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	88.66
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	88.66
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	88.61
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	88.58
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	88.58
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	88.56
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	88.56
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	88.53
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	88.38
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	88.3
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	88.26
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	88.26
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	88.26
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	88.21
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	88.15
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	88.08
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	87.99
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	87.99
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	87.93
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	87.85
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	87.82
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	87.81
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	87.64
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	87.63
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	87.61
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	87.58
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	87.58
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	87.58
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	87.57
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	87.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	87.47
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.43
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	87.43
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	87.29
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	87.25
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	87.17
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	87.15
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	87.13
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	87.11
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	87.11
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	87.09
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	87.08
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	87.06
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	86.93
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	86.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	86.92
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	86.9
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	86.9
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	86.88
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	86.87
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	86.87
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	86.87
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	86.8
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	86.66
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	86.65
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	86.59
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	86.49
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	86.49
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	86.46
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	86.43
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	86.41
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	86.38
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	86.28
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	86.27
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	86.23
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	86.23
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	86.19
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	86.19
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	86.18
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	86.16
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	86.15
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	86.15
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	86.12
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	86.12
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	86.11
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	86.1
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	86.09
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	86.09
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	86.06
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	85.98
1lnq_A	336	MTHK channels, potassium channel related protein;	85.96
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	85.92
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	85.9
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	85.88
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	85.84
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	85.82
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	85.77
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	85.76
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	85.76
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	85.73
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	85.72
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	85.68
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	85.66
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	85.62
3qha_A	296	Putative oxidoreductase; seattle structural genomi	85.6
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	85.54
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	85.52
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	85.5
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	85.44
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	85.37
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	85.36
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	85.35
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	85.32
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	85.31
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	85.29
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	85.23
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	85.23
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	85.21
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	85.19
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	85.11
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	85.07
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	85.04
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	85.03
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	84.94
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	84.91
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	84.89

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.3e-49  Score=363.94  Aligned_cols=253  Identities=50%  Similarity=0.871  Sum_probs=221.8

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +...|++|||++++.++++++++++|.|+|+++||||||++++||++|++.+.|.++..  .+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~P~v~GhE~~G~V~~vG~   79 (378)
T 3uko_A            2 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEG--LFPCILGHEAAGIVESVGE   79 (378)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTC--CSSBCCCCEEEEEEEEECT
T ss_pred             CcccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCC--CCCccCCccceEEEEEeCC
Confidence            45678999999999999889999999999999999999999999999999999987654  7899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +|++|++||||++.+..+|+.|++|++|++++|++.....+.|.. .+|..++ ..+|....++++.|+|+||+++|.++
T Consensus        80 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~~~  158 (378)
T 3uko_A           80 GVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVS  158 (378)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSE-EETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             CCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCcccc-ccCCcccccccCCcceEeEEEechhh
Confidence            999999999999999999999999999999999886532223322 3333233 22445556677778999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      ++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|+++++++|
T Consensus       159 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lG  238 (378)
T 3uko_A          159 VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFG  238 (378)
T ss_dssp             EEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTT
T ss_pred             eEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC
Confidence            99999999999999999999999998888899999999999999999999999999999988999999999999999999


Q ss_pred             CCEEECCCCCCcccccc
Q 024496          248 ITDFINPATCGDKTVSQ  264 (267)
Q Consensus       248 ~~~vi~~~~~~~~~~~~  264 (267)
                      +++++|+++..+++.+.
T Consensus       239 a~~vi~~~~~~~~~~~~  255 (378)
T 3uko_A          239 VNEFVNPKDHDKPIQEV  255 (378)
T ss_dssp             CCEEECGGGCSSCHHHH
T ss_pred             CcEEEccccCchhHHHH
Confidence            99999997311455443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=3.9e-48  Score=354.94  Aligned_cols=245  Identities=48%  Similarity=0.774  Sum_probs=211.9

Q ss_pred             CCCcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496            7 SPKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      |.++++|++|||+++..++++++++++|.|+|+++||||||.+++||++|++.+.|.++ .  .+|.++|||++|+|+++
T Consensus         1 ~~~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~--~~P~v~GhE~~G~V~~v   77 (373)
T 1p0f_A            1 MCTAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-S--KFPVILGHEAVGVVESI   77 (373)
T ss_dssp             -CCTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-C--CSSBCCCCCEEEEEEEE
T ss_pred             CcccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-C--CCCcccCcCceEEEEEE
Confidence            56677899999999999987799999999999999999999999999999999998765 3  68999999999999999


Q ss_pred             cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc
Q 024496           87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT  166 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~  166 (267)
                      |++|++|++||||++.+..+|+.|++|++|++++|++.....+.|+..+|..++ .+.|....+++..|+|+||+++|++
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~~  156 (373)
T 1p0f_A           78 GAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADI  156 (373)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSE-EETTEEEBCSTTTCCSBSEEEEETT
T ss_pred             CCCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCcccc-ccCCcccccccCCccceeEEEEchh
Confidence            999999999999999999999999999999999998765322223332321111 0112222333344799999999999


Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +++++|++++++ |+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++++++++++
T Consensus       157 ~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  235 (373)
T 1p0f_A          157 AVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL  235 (373)
T ss_dssp             SEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             hEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            999999999999 9999999999999887888999999999999999999999999999998899999999999999999


Q ss_pred             CCCEEECCCC
Q 024496          247 GITDFINPAT  256 (267)
Q Consensus       247 G~~~vi~~~~  256 (267)
                      |+++++|+++
T Consensus       236 Ga~~vi~~~~  245 (373)
T 1p0f_A          236 GATECLNPKD  245 (373)
T ss_dssp             TCSEEECGGG
T ss_pred             CCcEEEeccc
Confidence            9999999874

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-47  Score=350.42  Aligned_cols=245  Identities=50%  Similarity=0.841  Sum_probs=212.7

Q ss_pred             CCcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHH-hHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496            8 PKAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVT-FWKSSTDLPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus         8 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      +|..+|++|||+++..++++++++++|.|+|+++||||||.+++||++|++ .+.|.++ .  .+|.++|||++|+|+++
T Consensus         1 ~~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~--~~P~v~GhE~~G~V~~v   77 (374)
T 1cdo_A            1 ATVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-D--GFPVVLGHEGAGIVESV   77 (374)
T ss_dssp             CCTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-T--SCSEECCCCEEEEEEEE
T ss_pred             CCCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-C--CCCcccCccceEEEEEE
Confidence            356789999999999998779999999999999999999999999999999 8888765 3  68999999999999999


Q ss_pred             cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc
Q 024496           87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT  166 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~  166 (267)
                      |++|++|++||||++.+..+|+.|++|++|++++|++.....+.|+..+|..++ .+.|....+++..|+|+||+++|++
T Consensus        78 G~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~~  156 (374)
T 1cdo_A           78 GPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQI  156 (374)
T ss_dssp             CTTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCE-EETTEEEEEGGGTCCSBSEEEEEGG
T ss_pred             CCCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCcccc-ccCCcccccccCCccceeEEEEchh
Confidence            999999999999999999999999999999999998765322223332332111 1112223334445799999999999


Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++
T Consensus       157 ~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  236 (374)
T 1cdo_A          157 AVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF  236 (374)
T ss_dssp             GEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             heEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh
Confidence            99999999999999999999999999887788999999999999999999999999999998899999999999999999


Q ss_pred             CCCEEECCCC
Q 024496          247 GITDFINPAT  256 (267)
Q Consensus       247 G~~~vi~~~~  256 (267)
                      |+++++|+++
T Consensus       237 Ga~~vi~~~~  246 (374)
T 1cdo_A          237 GATDFVNPND  246 (374)
T ss_dssp             TCCEEECGGG
T ss_pred             CCceEEeccc
Confidence            9999999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=3e-47  Score=349.44  Aligned_cols=243  Identities=44%  Similarity=0.767  Sum_probs=208.7

Q ss_pred             cCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCC
Q 024496           10 AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        10 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      .+.|++|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|. +..  .+|.++|||++|+|+++|++
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~--~~P~v~GhE~~G~V~~vG~~   79 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKA--LFPVVLGHECAGIVESVGPG   79 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCC--CSSBCCCCEEEEEEEEECTT
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCC--CCCcccCccccEEEEEECCC
Confidence            467899999999999877999999999999999999999999999999999886 333  68999999999999999999


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCC----CCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFG----RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      |++|++||||++.+..+|+.|++|++|++++|++..    ...+.|...+|..++ .+.|....+++..|+|+||+++|+
T Consensus        80 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~  158 (376)
T 1e3i_A           80 VTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSE  158 (376)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             CccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCcccc-ccCCcccccccCCccceeEEEecc
Confidence            999999999999999999999999999999998754    100113322221111 011222233334479999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|+++++++++++++++
T Consensus       159 ~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          159 ANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             ccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            99999999999999999999999999988788899999999999999999999999999999889999999999999999


Q ss_pred             cCCCEEECCCC
Q 024496          246 FGITDFINPAT  256 (267)
Q Consensus       246 ~G~~~vi~~~~  256 (267)
                      +|+++++|+++
T Consensus       239 lGa~~vi~~~~  249 (376)
T 1e3i_A          239 LGATDCLNPRE  249 (376)
T ss_dssp             TTCSEEECGGG
T ss_pred             hCCcEEEcccc
Confidence            99999999874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=4.6e-47  Score=348.00  Aligned_cols=244  Identities=50%  Similarity=0.825  Sum_probs=211.8

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +..+|++|||+++..++++++++++|.|+|+++||||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~P~v~GhE~~G~V~~vG~   78 (374)
T 2jhf_A            2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGE   78 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---CSSBCCCCSEEEEEEEECT
T ss_pred             CCCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC---CCCcccCcCceEEEEEECC
Confidence            3467899999999999877999999999999999999999999999999999987643   3789999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccce
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHV  168 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  168 (267)
                      +|++|++||||++.+..+|+.|++|++|++++|++.....+.|+..+|..++ .+.|....+++..|+|+||+++|++++
T Consensus        79 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~~~~  157 (374)
T 2jhf_A           79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISV  157 (374)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSE-EETTEEEBCSTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccc-cccccccccccCCccCeeEEEEchHHe
Confidence            9999999999999999999999999999999998865432224333332211 011222333444579999999999999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +++|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++++++++++|+
T Consensus       158 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa  237 (374)
T 2jhf_A          158 AKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA  237 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             EECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            99999999999999999999999988778899999999999999999999999999999889999999999999999999


Q ss_pred             CEEECCCC
Q 024496          249 TDFINPAT  256 (267)
Q Consensus       249 ~~vi~~~~  256 (267)
                      ++++|+++
T Consensus       238 ~~vi~~~~  245 (374)
T 2jhf_A          238 TECVNPQD  245 (374)
T ss_dssp             SEEECGGG
T ss_pred             ceEecccc
Confidence            99999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.9e-47  Score=350.30  Aligned_cols=243  Identities=50%  Similarity=0.831  Sum_probs=209.9

Q ss_pred             CccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           11 GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      ++|++|||+++..++++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|++|
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~P~v~GhE~~G~V~~vG~~V   79 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEG--CFPVILGHLGAGIVESVGEGV   79 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTC--CSSBCCCCEEEEEEEEECTTC
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCC--CCCccccccccEEEEEECCCC
Confidence            578999999999998779999999999999999999999999999999999876543  689999999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||||++.+..+|+.|++|++|++++|++.....+.|+..+|..++ ...|....+++..|+|+||+++|.+++++
T Consensus        80 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~-~~~g~~~~~~~~~G~~aey~~v~~~~~~~  158 (373)
T 2fzw_A           80 TKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAK  158 (373)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccc-cccccccccccCCccceeEEEEchhheEE
Confidence            99999999999999999999999999999998753211112222221111 01122233344457999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++
T Consensus       159 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~  238 (373)
T 2fzw_A          159 IDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE  238 (373)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSE
T ss_pred             CCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce
Confidence            99999999999999999999998878889999999999999999999999999999988999999999999999999999


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++|+++
T Consensus       239 vi~~~~  244 (373)
T 2fzw_A          239 CINPQD  244 (373)
T ss_dssp             EECGGG
T ss_pred             Eecccc
Confidence            999874

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-46  Score=343.73  Aligned_cols=246  Identities=30%  Similarity=0.560  Sum_probs=206.7

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      +++|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|++|++
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~P~v~GhE~~G~V~~vG~~v~~   80 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV---PLPAVLGHEGSGIIEAIGPNVTE   80 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC---CSSBCCCCEEEEEEEEECTTCCS
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCC---CCCcccCcccceEEEEeCCCCCC
Confidence            578999999999877999999999999999999999999999999999987652   57999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCcee-cccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVI-HHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      |++||||++.+ .+|+.|++|++|++++|++.......|...+|..++....|... .+++..|+|+||+++|.++++++
T Consensus        81 ~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~i  159 (371)
T 1f8f_A           81 LQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  159 (371)
T ss_dssp             CCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             CCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEEC
Confidence            99999999999 99999999999999999865310001111122111000000000 11223469999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      |+++++++|+++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++++
T Consensus       160 P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  239 (371)
T 1f8f_A          160 TKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHV  239 (371)
T ss_dssp             CTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEE
Confidence            99999999999999999999988788899999999999999999999999999999779999999999999999999999


Q ss_pred             ECCCCCCcccccc
Q 024496          252 INPATCGDKTVSQ  264 (267)
Q Consensus       252 i~~~~~~~~~~~~  264 (267)
                      +|+++  +++.++
T Consensus       240 i~~~~--~~~~~~  250 (371)
T 1f8f_A          240 INSKT--QDPVAA  250 (371)
T ss_dssp             EETTT--SCHHHH
T ss_pred             ecCCc--cCHHHH
Confidence            99987  665443

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2e-46  Score=342.27  Aligned_cols=223  Identities=26%  Similarity=0.418  Sum_probs=197.9

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCC---CCCCCCCcccceeeEEEEE
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTD---LPKLPLPVIFGHEAVGVVE   84 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~~~p~~~G~e~~G~V~   84 (267)
                      ++..|++|||+++++++++++++++|.|+ |+++||||||.+++||++|++.+.|.++   ..  .+|.++|||++|+|+
T Consensus         9 ~~~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~--~~p~v~G~E~~G~V~   86 (359)
T 1h2b_A            9 QSLGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQP--KLPYTLGHENVGYIE   86 (359)
T ss_dssp             --------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCC--CSSEECCCCEEEEEE
T ss_pred             hcCChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCC--CCCeecCcCceEEEE
Confidence            34467889999999998779999999999 9999999999999999999999998764   22  679999999999999


Q ss_pred             EecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee
Q 024496           85 SVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        85 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      ++|++|++|++||||+..+..+|+.|++|++|++++|++...   .|...+|                   +|+||+++|
T Consensus        87 ~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~  144 (359)
T 1h2b_A           87 EVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTS  144 (359)
T ss_dssp             EECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEEC
T ss_pred             EECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cccceEEec
Confidence            999999999999999888889999999999999999987653   4444444                   999999999


Q ss_pred             ccceEEcCCCCChhhhh---hcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhh
Q 024496          165 ITHVVKITPHIPLGIAC---LLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLN-RASKIIGVDINPEK  239 (267)
Q Consensus       165 ~~~~~~iP~~~~~~~aa---~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~-g~~~vi~~~~~~~~  239 (267)
                      .++++++|+++++++|+   .+.+++.|||+++.+. .++++|++|||+|+|++|++++|+|+++ |+ +|++++++++|
T Consensus       145 ~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~~~~~~~~  223 (359)
T 1h2b_A          145 HRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIALDVKEEK  223 (359)
T ss_dssp             GGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEEEESSHHH
T ss_pred             hHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEEEeCCHHH
Confidence            99999999999999999   7888899999976655 8999999999999999999999999999 99 89999999999


Q ss_pred             HHHHHHcCCCEEECCCC
Q 024496          240 FEIGKKFGITDFINPAT  256 (267)
Q Consensus       240 ~~~~~~~G~~~vi~~~~  256 (267)
                      +++++++|+++++|+++
T Consensus       224 ~~~~~~lGa~~vi~~~~  240 (359)
T 1h2b_A          224 LKLAERLGADHVVDARR  240 (359)
T ss_dssp             HHHHHHTTCSEEEETTS
T ss_pred             HHHHHHhCCCEEEeccc
Confidence            99999999999999987

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=2.5e-46  Score=338.84  Aligned_cols=224  Identities=29%  Similarity=0.448  Sum_probs=205.7

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      +|||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|+++++|+
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~P~v~G~E~~G~V~~vG~~v~~~~   80 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKP-TLPFIPGHEGVGYVSAVGSGVSRVK   80 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCC-CSSBCCCSEEEEEEEEECSSCCSCC
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCC-CCCcccCCcceEEEEEECCCCCcCC
Confidence            599999999888899999999999999999999999999999999999876532 6899999999999999999999999


Q ss_pred             CCCEEE-eeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVL-PIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||||+ ..+...|+.|++|++|++++|++...   .|+..+|                   +|+||+++|.++++++|+
T Consensus        81 vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~  138 (340)
T 3s2e_A           81 EGDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPD  138 (340)
T ss_dssp             TTCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCT
T ss_pred             CCCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCC
Confidence            999994 56678999999999999999988765   5555555                   999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++|+.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|
T Consensus       139 ~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~  216 (340)
T 3s2e_A          139 KVGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVN  216 (340)
T ss_dssp             TSCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEe
Confidence            999999999999999999976 77899999999999999999999999999999 9999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 024496          254 PATCGDKTVSQV  265 (267)
Q Consensus       254 ~~~~~~~~~~~v  265 (267)
                      +++  +++.+++
T Consensus       217 ~~~--~~~~~~~  226 (340)
T 3s2e_A          217 ARD--TDPAAWL  226 (340)
T ss_dssp             TTT--SCHHHHH
T ss_pred             CCC--cCHHHHH
Confidence            988  6665543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=1.2e-45  Score=338.53  Aligned_cols=223  Identities=23%  Similarity=0.400  Sum_probs=204.6

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .|++|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|++++
T Consensus        20 ~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~---~~p~v~G~e~~G~V~~vG~~v~   95 (370)
T 4ej6_A           20 FQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS---TPPVTLGHEFCGIVVEAGSAVR   95 (370)
T ss_dssp             -CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCC---CSSEECCCSEEEEEEEECTTCC
T ss_pred             cchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCC---CCCeecCcceEEEEEEECCCCC
Confidence            677899999999976 999999999999999999999999999999999998643   6899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||||++.+...|+.|++|++|++++|++...   .|...+|                   +|+||+++|.++++++
T Consensus        96 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~  153 (370)
T 4ej6_A           96 DIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAFEI  153 (370)
T ss_dssp             SSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEEEC
Confidence            99999999999999999999999999999988654   4555555                   9999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      |+++++++|+ +..+++++|+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++++++++++++++|++++
T Consensus       154 P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  231 (370)
T 4ej6_A          154 PLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATAT  231 (370)
T ss_dssp             CTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEE
Confidence            9999999998 555999999976 88999999999999999999999999999999899999999999999999999999


Q ss_pred             ECCCCCCcccccc
Q 024496          252 INPATCGDKTVSQ  264 (267)
Q Consensus       252 i~~~~~~~~~~~~  264 (267)
                      +|+++  +++.+.
T Consensus       232 i~~~~--~~~~~~  242 (370)
T 4ej6_A          232 VDPSA--GDVVEA  242 (370)
T ss_dssp             ECTTS--SCHHHH
T ss_pred             ECCCC--cCHHHH
Confidence            99988  666544

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=1.1e-44  Score=329.05  Aligned_cols=222  Identities=22%  Similarity=0.290  Sum_probs=195.6

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|++|++|
T Consensus         3 m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            3 VQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEG--IYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCC--CSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             eEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCC--CCCeecCcceeEEEEEECCCCCCC
Confidence            689999999998889999999999999999999999999999999999987655  789999999999999999999999


Q ss_pred             CCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           94 KERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        94 ~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ++||||++.+. .+|+.|++|++|++++|. ...   .++..+...         .......|+|+||+++|.++++++|
T Consensus        81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~~---------~~~~~~~G~~aey~~v~~~~~~~iP  147 (348)
T 3two_A           81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDSF---------HDNEPHMGGYSNNIVVDENYVISVD  147 (348)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEGG---------GTTEECCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---ccccccccc---------ccCCcCCccccceEEechhhEEECC
Confidence            99999988654 789999999999999998 221   222221000         0000112599999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++|+.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++
T Consensus       148 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          148 KNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec
Confidence            9999999999999999999975 56799999999999999999999999999999 999999999999999999999998

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=4.5e-45  Score=333.26  Aligned_cols=228  Identities=23%  Similarity=0.278  Sum_probs=199.9

Q ss_pred             ccccceeEEeecCCCCeEEEE--eecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCC
Q 024496           12 KVIRCKAAICRIPGKPLVIEE--IEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      .|.+|||+++.+++.++++++  +|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|++
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~v~GhE~~G~V~~vG~~   80 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNM--KMPLVVGHEIVGKVVKLGPK   80 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCC--CSSEECCCCEEEEEEEECTT
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCC--CCCcccCcCceEEEEEeCCC
Confidence            355799999999886788899  99999999999999999999999999999876543  67999999999999999999


Q ss_pred             Cc-ccCCCCEEEee-ccCCCCCCcccccCCCCCCCCC-CCCCC---CCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           90 VE-EVKERDLVLPI-FHRDCGECRDCKSSKSNTCSKF-GRGYR---PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        90 v~-~~~~Gd~V~~~-~~~~~~~c~~c~~~~~~~c~~~-~~~~~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      |+ +|++||||++. ...+|+.|++|++|++++|++. ....+   .|...+                   |+|+||+++
T Consensus        81 v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v  141 (360)
T 1piw_A           81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQ-------------------GGYANYVRV  141 (360)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCC-------------------CSSBSEEEE
T ss_pred             CCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCC-------------------CcceeEEEE
Confidence            99 99999999654 4578999999999999999865 11000   022223                   499999999


Q ss_pred             eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      |.++++++|+++++++|+++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++++
T Consensus       142 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~  219 (360)
T 1piw_A          142 HEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDA  219 (360)
T ss_dssp             EGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHH
T ss_pred             chhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            999999999999999999999999999997654 899999999999999999999999999999 899999999999999


Q ss_pred             HHcCCCEEECCCCCCc-ccccc
Q 024496          244 KKFGITDFINPATCGD-KTVSQ  264 (267)
Q Consensus       244 ~~~G~~~vi~~~~~~~-~~~~~  264 (267)
                      +++|+++++|+++  + ++.++
T Consensus       220 ~~lGa~~v~~~~~--~~~~~~~  239 (360)
T 1piw_A          220 MKMGADHYIATLE--EGDWGEK  239 (360)
T ss_dssp             HHHTCSEEEEGGG--TSCHHHH
T ss_pred             HHcCCCEEEcCcC--chHHHHH
Confidence            9999999999877  5 55443

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.2e-44  Score=327.90  Aligned_cols=217  Identities=25%  Similarity=0.423  Sum_probs=199.3

Q ss_pred             ceeEEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++..++. ++++|+|.|+ +++|||||||.+++||++|++.+.+..+.   .+|+++|||++|+|+++|++|++|+
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~---~~P~i~G~E~~G~V~~vG~~V~~~~   76 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH---YYPITLGHEFSGYIDAVGSGVDDLH   76 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS---SSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC---CCCccccEEEEEEEEEECCCccccc
Confidence            89999999987 9999999998 57999999999999999999999887653   6899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||+|++.+...|+.|.+|+.|.+++|.+...   .|...+|                   +|+||+++|.++++++|++
T Consensus        77 ~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  134 (346)
T 4a2c_A           77 PGDAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTD  134 (346)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCC
Confidence            99999999999999999999999999988765   5666665                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++||++. .++++++ ..+..++++|++|||+|+|++|++++|+|+++|+..+++++++++|+++++++|+++++|+
T Consensus       135 l~~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~  212 (346)
T 4a2c_A          135 MPIEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNS  212 (346)
T ss_dssp             SCGGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeC
Confidence            9999999876 5566666 6788999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCcccc
Q 024496          255 ATCGDKTV  262 (267)
Q Consensus       255 ~~~~~~~~  262 (267)
                      ++  +++.
T Consensus       213 ~~--~~~~  218 (346)
T 4a2c_A          213 SE--MSAP  218 (346)
T ss_dssp             TT--SCHH
T ss_pred             CC--CCHH
Confidence            88  5543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=5.6e-45  Score=331.09  Aligned_cols=225  Identities=28%  Similarity=0.418  Sum_probs=188.7

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhc-CCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS-STDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      |++|||+++..++.+++++++|.|+|+++||||||.+++||++|++.+.| .++.....+|.++|||++|+|+++|++|+
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            45799999999985599999999999999999999999999999999998 43200015789999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||||++.+..+|+.|++|++|++++|++...   .|...+|                   +|+||+++|.++++++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEEC
Confidence            99999999999999999999999999999987654   3444444                   9999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      |+++++++|+++. +++|||+++ +..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~  216 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYV  216 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence            9999999999886 888999976 67888 99999999999999999999999999889999999999999999999999


Q ss_pred             ECCCCCCcccccc
Q 024496          252 INPATCGDKTVSQ  264 (267)
Q Consensus       252 i~~~~~~~~~~~~  264 (267)
                      +|+++  +++.++
T Consensus       217 ~~~~~--~~~~~~  227 (348)
T 2d8a_A          217 INPFE--EDVVKE  227 (348)
T ss_dssp             ECTTT--SCHHHH
T ss_pred             ECCCC--cCHHHH
Confidence            99987  665443

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=8.9e-45  Score=330.25  Aligned_cols=224  Identities=26%  Similarity=0.381  Sum_probs=202.2

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHH-hHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVT-FWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++.++++ ++++++|.|+|+++||||||.+++||++|++ ++.|.++.   .+|.++|||++|+|+++|++|++|+
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~---~~p~v~G~E~~G~V~~vG~~v~~~~   76 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE---RHNMILGHEAVGEVVEVGSEVKDFK   76 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC---CSSEECCCEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC---CCCcccCCcceEEEEEECCCCCcCC
Confidence            89999999998 9999999999999999999999999999999 56777653   5799999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc--ceEEcC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT--HVVKIT  172 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~--~~~~iP  172 (267)
                      +||||++.+..+|+.|.+|+.|+++.|.....+...+...+|                   +|+||+++|..  +++++|
T Consensus        77 vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G-------------------~~aey~~v~~~~~~~~~iP  137 (352)
T 3fpc_A           77 PGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDG-------------------VFGEFFHVNDADMNLAHLP  137 (352)
T ss_dssp             TTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCC-------------------SSBSCEEESSHHHHCEECC
T ss_pred             CCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCC-------------------cccceEEeccccCeEEECC
Confidence            999999999999999999999999999765443333333444                   99999999976  999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++|++++++++|||+++ +..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|+++++++|+++++
T Consensus       138 ~~~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  216 (352)
T 3fpc_A          138 KEIPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDII  216 (352)
T ss_dssp             TTSCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEE
T ss_pred             CCCCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEE
Confidence            9999999999988999999975 789999999999999999999999999999998899999999999999999999999


Q ss_pred             CCCCCCccccccc
Q 024496          253 NPATCGDKTVSQV  265 (267)
Q Consensus       253 ~~~~~~~~~~~~v  265 (267)
                      |+++  +++.+++
T Consensus       217 ~~~~--~~~~~~v  227 (352)
T 3fpc_A          217 NYKN--GDIVEQI  227 (352)
T ss_dssp             CGGG--SCHHHHH
T ss_pred             cCCC--cCHHHHH
Confidence            9988  6665543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.2e-44  Score=328.99  Aligned_cols=231  Identities=23%  Similarity=0.313  Sum_probs=198.6

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      ...+.|+|+++++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+
T Consensus        16 ~~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~P~v~GhE~~G~V~~vG~   93 (369)
T 1uuf_A           16 YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT--VYPCVPGHEIVGRVVAVGD   93 (369)
T ss_dssp             -------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCC--CSSBCCCCCEEEEEEEECT
T ss_pred             hHhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCC--CCCeecccCceEEEEEECC
Confidence            34578899999998887779999999999999999999999999999999999876543  6799999999999999999


Q ss_pred             CCcccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCC-----CCCCCCCCccccccCCceecccccccceeeeEE
Q 024496           89 YVEEVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYR-----PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSV  162 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~-----~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~  162 (267)
                      +|++|++||||++.+. ..|+.|++|++|++++|++....+.     .|...+                   |+|+||++
T Consensus        94 ~V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~-------------------G~~aeyv~  154 (369)
T 1uuf_A           94 QVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTL-------------------GGYSQQIV  154 (369)
T ss_dssp             TCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCC-------------------CSSBSEEE
T ss_pred             CCCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCC-------------------CcccceEE
Confidence            9999999999998765 4699999999999999987521110     021222                   49999999


Q ss_pred             eeccceEEcCCC-CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          163 VDITHVVKITPH-IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       163 v~~~~~~~iP~~-~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      +|.++++++|++ +++++|+.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       155 v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~  232 (369)
T 1uuf_A          155 VHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLR-HWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKRE  232 (369)
T ss_dssp             EEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHH
T ss_pred             EcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            999999999999 999999999999999999765 4799999999999999999999999999999 7999999999999


Q ss_pred             HHHHcCCCEEECCCCCCcccccc
Q 024496          242 IGKKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       242 ~~~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      +++++|+++++|+++  +++.++
T Consensus       233 ~a~~lGa~~vi~~~~--~~~~~~  253 (369)
T 1uuf_A          233 AAKALGADEVVNSRN--ADEMAA  253 (369)
T ss_dssp             HHHHHTCSEEEETTC--HHHHHT
T ss_pred             HHHHcCCcEEecccc--HHHHHH
Confidence            999999999999987  555443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=3.9e-44  Score=324.56  Aligned_cols=222  Identities=30%  Similarity=0.461  Sum_probs=199.5

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||++++.++++++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|++|++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~v~GhE~~G~V~~vG~~v~~~~v   79 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVK-PKLPLIPGHEGVGIVEEVGPGVTHLKV   79 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSC-CCSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcC-CCCCeeccccceEEEEEECCCCCcCCC
Confidence            7999999998669999999999999999999999999999999999876532 267999999999999999999999999


Q ss_pred             CCEEEeeccC-CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIFHR-DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||||++.+.. .|+.|++|++|.+++|++...   .|...+|                   +|+||+++|.++++++|++
T Consensus        80 GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~  137 (339)
T 1rjw_A           80 GDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDN  137 (339)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTT
T ss_pred             CCEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCC
Confidence            9999886654 599999999999999987654   3444444                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++|+.+++++.|||+++. ..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++++|+
T Consensus       138 ~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~  215 (339)
T 1rjw_A          138 LSFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP  215 (339)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHH-HHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHhhhhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecC
Confidence            999999999999999999764 4599999999999998999999999999999 99999999999999999999999999


Q ss_pred             CCCCcccccc
Q 024496          255 ATCGDKTVSQ  264 (267)
Q Consensus       255 ~~~~~~~~~~  264 (267)
                      ++  +++.++
T Consensus       216 ~~--~~~~~~  223 (339)
T 1rjw_A          216 LK--EDAAKF  223 (339)
T ss_dssp             TT--SCHHHH
T ss_pred             CC--ccHHHH
Confidence            87  555443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.6e-44  Score=329.17  Aligned_cols=218  Identities=22%  Similarity=0.350  Sum_probs=195.1

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      +|+|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.+.. ......+|.++|||++|+|+++|++|+
T Consensus         5 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~   83 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVK   83 (356)
T ss_dssp             CCCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCC
T ss_pred             ccCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCC
Confidence            36799999999876 9999999999999999999999999999999887532 111115789999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||||++.+..+|+.|++|++|++++|++...   .|.. .+                   |+|+||+++|.+++++
T Consensus        84 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~  141 (356)
T 1pl8_A           84 HLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYK  141 (356)
T ss_dssp             SCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC-------------------CccccEEEeehHHEEE
Confidence            99999999999999999999999999999987653   3321 23                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +|+++++++|+++ .++++||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++
T Consensus       142 iP~~l~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  219 (356)
T 1pl8_A          142 LPDNVTFEEGALI-EPLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADL  219 (356)
T ss_dssp             CCTTSCHHHHHHH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSE
T ss_pred             CcCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE
Confidence            9999999999876 4888999976 7889999999999999999999999999999989999999999999999999999


Q ss_pred             EECCC
Q 024496          251 FINPA  255 (267)
Q Consensus       251 vi~~~  255 (267)
                      ++|++
T Consensus       220 vi~~~  224 (356)
T 1pl8_A          220 VLQIS  224 (356)
T ss_dssp             EEECS
T ss_pred             EEcCc
Confidence            99987

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=7.1e-44  Score=323.32  Aligned_cols=221  Identities=26%  Similarity=0.404  Sum_probs=196.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++.....+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            89999999998899999999999999999999999999999999998765322368999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCC-C-CCCCCCCCCccccccCCceecccccccceeeeEEee-ccceEEcC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG-Y-RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD-ITHVVKIT  172 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~-~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~-~~~~~~iP  172 (267)
                      ||||++.+...|+.|++|++|.+++|...... . ..|...+                   |+|+||+++| .++++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP-------------------GSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBC-------------------CSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCC-------------------ceeeEEEEecchhceEeCC
Confidence            99999999999999999999999999432210 0 0122223                   4999999999 99999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHH-HhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWK-VAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~-~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      + +++++|+.+++++.|||+++.+ ..++++|++|||+|+|++|++++|+|+++|..+|++++++++|+++++++|++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~  220 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA  220 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence            9 9999999999999999998765 3489999999999999999999999999955599999999999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      +|+++
T Consensus       221 i~~~~  225 (345)
T 3jv7_A          221 VKSGA  225 (345)
T ss_dssp             EECST
T ss_pred             EcCCC
Confidence            99865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.7e-44  Score=324.05  Aligned_cols=217  Identities=27%  Similarity=0.414  Sum_probs=193.4

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhc-CCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKS-STDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      ++|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.+ ........+|.++|||++|+|+++|++|++
T Consensus         3 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (352)
T 1e3j_A            3 SDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   81 (352)
T ss_dssp             -CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             ccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCCC
Confidence            4699999999876 99999999999999999999999999999998874 332111257999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      |++||||++.+..+|+.|++|++|.+++|++...   .|.. .+                   |+|+||+++|.++++++
T Consensus        82 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~i  139 (352)
T 1e3j_A           82 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD-------------------GNLARYYVHAADFCHKL  139 (352)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC-------------------ccceeEEEeChHHeEEC
Confidence            9999999999999999999999999999987654   2321 23                   49999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      |+++++++|+++ .++++||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++++
T Consensus       140 P~~~~~~~aa~~-~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~  216 (352)
T 1e3j_A          140 PDNVSLEEGALL-EPLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVT  216 (352)
T ss_dssp             CTTSCHHHHHTH-HHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEE
T ss_pred             cCCCCHHHHHhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEE
Confidence            999999999876 4888999976 78899999999999999999999999999999 69999999999999999999999


Q ss_pred             ECCCC
Q 024496          252 INPAT  256 (267)
Q Consensus       252 i~~~~  256 (267)
                      +|+++
T Consensus       217 ~~~~~  221 (352)
T 1e3j_A          217 LVVDP  221 (352)
T ss_dssp             EECCT
T ss_pred             EcCcc
Confidence            99873

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.1e-43  Score=320.26  Aligned_cols=218  Identities=25%  Similarity=0.423  Sum_probs=191.4

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |.+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++.....+|.++|||++|+|+++|++ ++
T Consensus         1 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~   79 (344)
T 2h6e_A            1 MVKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AK   79 (344)
T ss_dssp             CEEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CC
T ss_pred             CceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CC
Confidence            35799999999986799999999999999999999999999999999998765211168999999999999999999 99


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-ccceEEc
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD-ITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~-~~~~~~i  171 (267)
                      |++||||+..+..+|++|++|++|++++|++...   .|...+|                   +|+||+++| +++++++
T Consensus        80 ~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i  137 (344)
T 2h6e_A           80 VKKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL  137 (344)
T ss_dssp             CCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe
Confidence            9999999888888999999999999999987643   3444444                   999999999 9999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHH----hCCCCCCEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHH
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKV----AGVEVGSTVAIFGLGAVGLAVAEGARLN--RASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~----~~~~~g~~VlI~G~g~vG~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~  245 (267)
                       +++++++|+.+++++.|||+++.+.    .++ +|++|||+|+|++|++++|+|+++  |+ +|+++++++++++++++
T Consensus       138 -~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~  214 (344)
T 2h6e_A          138 -NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALE  214 (344)
T ss_dssp             -SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHH
T ss_pred             -CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHH
Confidence             9999999999999999999976554    288 999999999999999999999999  99 89999999999999999


Q ss_pred             cCCCEEECCCC
Q 024496          246 FGITDFINPAT  256 (267)
Q Consensus       246 ~G~~~vi~~~~  256 (267)
                      +|+++++|+++
T Consensus       215 lGa~~vi~~~~  225 (344)
T 2h6e_A          215 LGADYVSEMKD  225 (344)
T ss_dssp             HTCSEEECHHH
T ss_pred             hCCCEEecccc
Confidence            99999998753

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.6e-44  Score=326.06  Aligned_cols=220  Identities=27%  Similarity=0.442  Sum_probs=198.4

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCC---CCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTD---LPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++   ..  .+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~--~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRI--RPPLVTGHEFSGVVEAVGPGVRR   78 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHC--CSSEECCCEEEEEEEEECTTCCS
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccC--CCCCcCCccceEEEEEECCCCCc
Confidence            79999999987799999999999999999999999999999999988654   22  57899999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||++.+..+|+.|++|++|++++|++...   .|...+|                   +|+||+++|.++++++|
T Consensus        79 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP  136 (343)
T 2dq4_A           79 PQVGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNP  136 (343)
T ss_dssp             SCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEEC
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECC
Confidence            9999999999999999999999999999987653   3433344                   99999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++|+++. ++++||+++.+..++ +|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++ +++++
T Consensus       137 ~~~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~  213 (343)
T 2dq4_A          137 KDLPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLV  213 (343)
T ss_dssp             TTSCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEE
T ss_pred             CCCCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhcc
Confidence            999999999874 788999976447889 999999999999999999999999998899999999999999999 99999


Q ss_pred             CCCCCCcccccc
Q 024496          253 NPATCGDKTVSQ  264 (267)
Q Consensus       253 ~~~~~~~~~~~~  264 (267)
                      |+++  +++.++
T Consensus       214 ~~~~--~~~~~~  223 (343)
T 2dq4_A          214 NPLE--EDLLEV  223 (343)
T ss_dssp             CTTT--SCHHHH
T ss_pred             CcCc--cCHHHH
Confidence            9987  665543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=9.7e-44  Score=322.33  Aligned_cols=222  Identities=25%  Similarity=0.402  Sum_probs=201.5

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|++|++|
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~v~G~E~~G~V~~vG~~v~~~   79 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPK-LPLPHVLGADGSGVVDAVGPGVEGF   79 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTT-CCSSEECCSEEEEEEEEECSSCCSC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCC-CCCCcccccceEEEEEEECCCCCCC
Confidence            799999999875  8899999999999999999999999999999999876542 2679999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||||++.+..+|+.|++|++|.+++|++...   .|...+|                   +|+||+++|.++++++|+
T Consensus        80 ~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~  137 (343)
T 2eih_A           80 APGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPK  137 (343)
T ss_dssp             CTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCC
Confidence            999999999999999999999999999987654   3444444                   999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++|+.+++++.|||+++.+..++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++.++++|+++++
T Consensus       138 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~  216 (343)
T 2eih_A          138 NLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETV  216 (343)
T ss_dssp             TSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEE
T ss_pred             CCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEE
Confidence            99999999999999999998765578999999999998 9999999999999999 999999999999999999999999


Q ss_pred             CCCCCCccccc
Q 024496          253 NPATCGDKTVS  263 (267)
Q Consensus       253 ~~~~~~~~~~~  263 (267)
                      |+++  +++.+
T Consensus       217 d~~~--~~~~~  225 (343)
T 2eih_A          217 NYTH--PDWPK  225 (343)
T ss_dssp             ETTS--TTHHH
T ss_pred             cCCc--ccHHH
Confidence            9887  55443

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-43  Score=320.27  Aligned_cols=220  Identities=28%  Similarity=0.404  Sum_probs=198.3

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .|.+|||+++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|++|+
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~v~G~E~~G~V~~vG~~v~   80 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLP-VKLPLVGGHEGAGVVVGMGENVK   80 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSC-CCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCC-CCCCcccCccceEEEEEECCCCC
Confidence            46789999999998669999999999999999999999999999999999876532 26799999999999999999999


Q ss_pred             ccCCCCEEEeeccC-CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFHR-DCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||||++.+.. .|+.|++|++|.+++|++...   .|...+|                   +|+||+++|.+++++
T Consensus        81 ~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~  138 (347)
T 2hcy_A           81 GWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAH  138 (347)
T ss_dssp             SCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEE
T ss_pred             CCcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEE
Confidence            99999999986654 599999999999999987653   3444444                   999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|+++++++|+++++++.|||+++ +..++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++.++++|++
T Consensus       139 iP~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~  216 (347)
T 2hcy_A          139 IPQGTDLAQVAPILCAGITVYKAL-KSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGE  216 (347)
T ss_dssp             ECTTCCHHHHGGGGTHHHHHHHHH-HTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHhhhHHHHHHHH-HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCc
Confidence            999999999999999999999975 4568999999999998 8999999999999999 999999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++|+++
T Consensus       217 ~~~d~~~  223 (347)
T 2hcy_A          217 VFIDFTK  223 (347)
T ss_dssp             EEEETTT
T ss_pred             eEEecCc
Confidence            9999873

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=6.1e-44  Score=325.84  Aligned_cols=218  Identities=22%  Similarity=0.336  Sum_probs=193.5

Q ss_pred             CccccceeEEeecCCCCeEEEEeecC--------CCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEE
Q 024496           11 GKVIRCKAAICRIPGKPLVIEEIEVE--------PPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVG   81 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~~~~~~~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G   81 (267)
                      +.+++|||+++..++. ++++++|.|        +|+++||||||.+++||++|++.+.+.. .....++|.++|||++|
T Consensus         4 ~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G   82 (363)
T 3m6i_A            4 SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAG   82 (363)
T ss_dssp             -CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEE
T ss_pred             CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEE
Confidence            3678999999998877 999999999        9999999999999999999999887432 22112679999999999


Q ss_pred             EEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeee
Q 024496           82 VVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEY  160 (267)
Q Consensus        82 ~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y  160 (267)
                      +|+++|++|++|++||||++.+..+|+.|.+|++|.++.|++...   .|.. .+                   |+|+||
T Consensus        83 ~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~-------------------G~~aey  140 (363)
T 3m6i_A           83 EVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVP-------------------GLLRRY  140 (363)
T ss_dssp             EEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSC-------------------CSCBSE
T ss_pred             EEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCC-------------------ccceeE
Confidence            999999999999999999999999999999999999999988765   3322 33                   499999


Q ss_pred             EEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          161 SVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       161 ~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +++|.++++++|+ +++++|+++. +++|||+++ +..++++|++|||+|+|++|++++|+|+++|+++|++++++++|+
T Consensus       141 ~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~  217 (363)
T 3m6i_A          141 VNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL  217 (363)
T ss_dssp             EEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred             EEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            9999999999999 9999999885 889999976 889999999999999999999999999999996699999999999


Q ss_pred             HHHHHcCCCEEECCC
Q 024496          241 EIGKKFGITDFINPA  255 (267)
Q Consensus       241 ~~~~~~G~~~vi~~~  255 (267)
                      ++++++ ++++++++
T Consensus       218 ~~a~~l-~~~~~~~~  231 (363)
T 3m6i_A          218 KFAKEI-CPEVVTHK  231 (363)
T ss_dssp             HHHHHH-CTTCEEEE
T ss_pred             HHHHHh-chhccccc
Confidence            999999 76666653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-43  Score=325.40  Aligned_cols=223  Identities=26%  Similarity=0.344  Sum_probs=195.0

Q ss_pred             ccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc--
Q 024496           14 IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE--   91 (267)
Q Consensus        14 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~--   91 (267)
                      .+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++| +|+  
T Consensus        16 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~--~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           16 LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV--PLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             EEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTC--CSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCC--CCCcccCcCcEEEEEEeC-Ccccc
Confidence            469999999998559999999999999999999999999999999999876533  689999999999999999 999  


Q ss_pred             ----ccCCCCEEEeeccCCCCCCcccc-cCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe-ec
Q 024496           92 ----EVKERDLVLPIFHRDCGECRDCK-SSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV-DI  165 (267)
Q Consensus        92 ----~~~~Gd~V~~~~~~~~~~c~~c~-~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v-~~  165 (267)
                          +|++||||++.+..+|+.|++|+ +|++++|++...   .|.....        +   ......|+|+||+++ |.
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~--------~---~~~~~~G~~aey~~v~~~  158 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC--------S---EYPHLRGCYSSHIVLDPE  158 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS--------S---STTCCCSSSBSEEEECTT
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---ecccccc--------C---CCCCCCccccceEEEccc
Confidence                99999999999999999999999 999999987543   2321000        0   000012499999999 99


Q ss_pred             cceEEcCCCCChh-hhhhcchhhhhHHHHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          166 THVVKITPHIPLG-IACLLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       166 ~~~~~iP~~~~~~-~aa~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++++|++++++ +|+++. +++|||+++ +..+ +++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++++
T Consensus       159 ~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          159 TDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             CCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             ceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            9999999999999 677666 999999976 6788 99999999999999999999999999955999999999999999


Q ss_pred             HHcCCCEEECCC
Q 024496          244 KKFGITDFINPA  255 (267)
Q Consensus       244 ~~~G~~~vi~~~  255 (267)
                      +++|+++++|++
T Consensus       237 ~~lGa~~vi~~~  248 (380)
T 1vj0_A          237 EEIGADLTLNRR  248 (380)
T ss_dssp             HHTTCSEEEETT
T ss_pred             HHcCCcEEEecc
Confidence            999999999987

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=4.6e-43  Score=319.77  Aligned_cols=226  Identities=24%  Similarity=0.335  Sum_probs=196.7

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .+|+|+++++.++.++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|++|+
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~P~v~GhE~~G~V~~vG~~v~   83 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMS--NYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCC--CSSBCCCCEEEEEEEEECSSCC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCC--CCCeecCcceeEEEEEECCCCC
Confidence            46889999998877779999999999999999999999999999999998876543  6899999999999999999999


Q ss_pred             ccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||||++.+. .+|++|++|++|.+++|+.....+ .+....|              ....|+|+||+++|.+++++
T Consensus        84 ~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~  148 (357)
T 2cf5_A           84 KFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSY-NDVYING--------------QPTQGGFAKATVVHQKFVVK  148 (357)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCTTS--------------CBCCCSSBSCEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccc-cccccCC--------------CCCCCccccEEEechhhEEE
Confidence            9999999987554 579999999999999996543221 1111111              01125999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVE-VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      +|+++++++|+.+++++.|||+++ +..+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++ ++|+
T Consensus       149 ~P~~ls~~~aa~l~~~~~ta~~~l-~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa  226 (357)
T 2cf5_A          149 IPEGMAVEQAAPLLCAGVTVYSPL-SHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGA  226 (357)
T ss_dssp             CCSSCCHHHHTGGGTHHHHHHHHH-HHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCC
T ss_pred             CcCCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCC
Confidence            999999999999999999999975 467888 99999999999999999999999999 9999999999999988 8999


Q ss_pred             CEEECCCC
Q 024496          249 TDFINPAT  256 (267)
Q Consensus       249 ~~vi~~~~  256 (267)
                      ++++|+++
T Consensus       227 ~~vi~~~~  234 (357)
T 2cf5_A          227 DDYVIGSD  234 (357)
T ss_dssp             SCEEETTC
T ss_pred             ceeecccc
Confidence            99999876

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=4e-43  Score=318.23  Aligned_cols=222  Identities=27%  Similarity=0.402  Sum_probs=199.4

Q ss_pred             ceeEEeecC-CCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           16 CKAAICRIP-GKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        16 ~~a~~~~~~-~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      |||+++... ...++++++|.|+|++|||||||.+++||++|++.+.|.++.   ++|.++|||++|+|+++|++|++|+
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~---~~p~i~GhE~aG~V~~vG~~V~~~~   77 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN---KAGTVLGHEGIGIVKEIGADVSSLQ   77 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC---CTTCBCCSEEEEEEEEECTTCCSCC
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC---CCCcccceeEEEEEEEECceeeecc
Confidence            899998643 344899999999999999999999999999999999998764   5899999999999999999999999


Q ss_pred             CCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           95 ERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        95 ~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      +||||++.+. ..|+.|.+|..+..+.|.....   .+...+|                   +|+||+.+++++++++|+
T Consensus        78 ~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~  135 (348)
T 4eez_A           78 VGDRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPD  135 (348)
T ss_dssp             TTCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCT
T ss_pred             cCCeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCC
Confidence            9999988765 4579999999999999988765   4555555                   999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      ++++++|+++++++.|+|++ .+..++++|++|||+|+|++|.+++|+++.++..+|++++++++|+++++++|+++++|
T Consensus       136 ~~~~~~aa~l~~~~~ta~~~-l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~  214 (348)
T 4eez_A          136 GLDPIEASSITCAGVTTYKA-IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTIN  214 (348)
T ss_dssp             TSCHHHHHHHHHHHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHHhhcccceeeEEee-ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEe
Confidence            99999999999999999996 47889999999999999999999999999876559999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 024496          254 PATCGDKTVSQV  265 (267)
Q Consensus       254 ~~~~~~~~~~~v  265 (267)
                      +++  +++.+++
T Consensus       215 ~~~--~~~~~~v  224 (348)
T 4eez_A          215 SGD--VNPVDEI  224 (348)
T ss_dssp             C-C--CCHHHHH
T ss_pred             CCC--CCHHHHh
Confidence            998  7776654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=9.3e-43  Score=316.34  Aligned_cols=219  Identities=29%  Similarity=0.426  Sum_probs=197.5

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC------CCCCCCcccceeeEEEEEEecCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------PKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~------~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++.      ....+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            799999999877999999999999999999999999999999999886541      01167999999999999999999


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-cce
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THV  168 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~-~~~  168 (267)
                      |++|++||||+..+..+|+.|++|++|++++|++...   .|...+|                   +|+||+++|. +++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999888888999999999999999987653   3444444                   9999999999 999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCC-HHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHc
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLG-AVGLAVAEGARLN-RASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +++ +++++++|+.+++++.|||+++ +..++++|++|||+|+| ++|++++|+++.+ |+ +|+++++++++++.++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 9999999999999999999976 45899999999999985 9999999999999 99 899999999999999999


Q ss_pred             CCCEEECCCCCCccc
Q 024496          247 GITDFINPATCGDKT  261 (267)
Q Consensus       247 G~~~vi~~~~~~~~~  261 (267)
                      |+++++|+++  +++
T Consensus       216 g~~~~~~~~~--~~~  228 (347)
T 1jvb_A          216 GADYVINASM--QDP  228 (347)
T ss_dssp             TCSEEEETTT--SCH
T ss_pred             CCCEEecCCC--ccH
Confidence            9999999887  555

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.4e-43  Score=325.63  Aligned_cols=231  Identities=26%  Similarity=0.334  Sum_probs=202.1

Q ss_pred             cCccccceeEEeecCCCCeEEEEeecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCCC-----CCCCCCcccceeeEEEE
Q 024496           10 AGKVIRCKAAICRIPGKPLVIEEIEVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTDL-----PKLPLPVIFGHEAVGVV   83 (267)
Q Consensus        10 ~~~~~~~~a~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-----~~~~~p~~~G~e~~G~V   83 (267)
                      ...+.+|++.+++.++. ++++++|.|+ |+++||||||.+++||++|++.+.|....     ....+|.++|||++|+|
T Consensus        25 ~~~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V  103 (404)
T 3ip1_A           25 IEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVV  103 (404)
T ss_dssp             BTTTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEE
T ss_pred             hhhhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEE
Confidence            44666778877777765 8999999999 99999999999999999999999864211     01267999999999999


Q ss_pred             EEecCCC------cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 024496           84 ESVGEYV------EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSF  157 (267)
Q Consensus        84 ~~vG~~v------~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  157 (267)
                      +++|++|      ++|++||||++.+...|+.|++|++|++++|++...   .|...+|                   +|
T Consensus       104 ~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~  161 (404)
T 3ip1_A          104 VEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------AF  161 (404)
T ss_dssp             EEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SS
T ss_pred             EEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------CC
Confidence            9999999      899999999999999999999999999999988764   5555555                   99


Q ss_pred             eeeEEeeccceEEcCCCCC------hhhhhhcchhhhhHHHHHHHH-hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeE
Q 024496          158 TEYSVVDITHVVKITPHIP------LGIACLLSCGVSTGVGAAWKV-AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKI  230 (267)
Q Consensus       158 a~y~~v~~~~~~~iP~~~~------~~~aa~l~~~~~ta~~a~~~~-~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~v  230 (267)
                      +||+++|.++++++|++++      +.+++.+..++++||+++... .++++|++|||+|+|++|++++|+|+++|+.+|
T Consensus       162 aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~V  241 (404)
T 3ip1_A          162 AEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKV  241 (404)
T ss_dssp             BSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEE
T ss_pred             cceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEE
Confidence            9999999999999999875      455888888999999987644 489999999999999999999999999999899


Q ss_pred             EEEcCChhhHHHHHHcCCCEEECCCCCCccccccc
Q 024496          231 IGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       231 i~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      ++++++++|+++++++|+++++|+++  +++.+++
T Consensus       242 i~~~~~~~~~~~~~~lGa~~vi~~~~--~~~~~~i  274 (404)
T 3ip1_A          242 ILSEPSEVRRNLAKELGADHVIDPTK--ENFVEAV  274 (404)
T ss_dssp             EEECSCHHHHHHHHHHTCSEEECTTT--SCHHHHH
T ss_pred             EEECCCHHHHHHHHHcCCCEEEcCCC--CCHHHHH
Confidence            99999999999999999999999988  6665543

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=6.3e-43  Score=318.72  Aligned_cols=216  Identities=18%  Similarity=0.184  Sum_probs=192.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCC---CcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPL---PVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~---p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |||+++++++++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+   |.++|||++| |+++|++ ++
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~~~p~v~G~E~~G-V~~vG~~-~~   76 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGF--PEGEDHLVLGHEAVG-VVVDPND-TE   76 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTS--CTTCSEEECCSEEEE-EEEECTT-SS
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCC--CCCCCCcccCceeEE-EEEECCC-CC
Confidence            7999999988879999999999999999999999999999999999876543  56   8999999999 9999999 99


Q ss_pred             cCCCCEEEeeccCC--CCCCcccccCCCCCCCCCCCCCCC--CC-CCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           93 VKERDLVLPIFHRD--CGECRDCKSSKSNTCSKFGRGYRP--NM-PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~--~~~c~~c~~~~~~~c~~~~~~~~~--g~-~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      |++||||++.+...  |+.|++|++|++++|++...   .  |. ..+                   |+|+||+++|+++
T Consensus        77 ~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~~  134 (357)
T 2b5w_A           77 LEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMY---FERGIVGAH-------------------GYMSEFFTSPEKY  134 (357)
T ss_dssp             CCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSC---EEETTBEEC-------------------CSCBSEEEEEGGG
T ss_pred             CCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcc---cccCccCCC-------------------cceeeEEEEchHH
Confidence            99999999988878  99999999999999987543   2  22 223                   4999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCC------CEEEEEcCCHHHHHH-HHHH-HHcCCCeEEEEcCChh-
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVG------STVAIFGLGAVGLAV-AEGA-RLNRASKIIGVDINPE-  238 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g------~~VlI~G~g~vG~~a-~~la-~~~g~~~vi~~~~~~~-  238 (267)
                      ++++|++++ ++| +++.+++|||+++ +..++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++ 
T Consensus       135 ~~~iP~~~~-~~a-al~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~  211 (357)
T 2b5w_A          135 LVRIPRSQA-ELG-FLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRP  211 (357)
T ss_dssp             EEECCGGGS-TTG-GGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSS
T ss_pred             eEECCCCcc-hhh-hhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCccc
Confidence            999999999 655 4667999999987 67889999      999999999999999 9999 9999966999999999 


Q ss_pred             --hHHHHHHcCCCEEECCCCCCccccc
Q 024496          239 --KFEIGKKFGITDFINPATCGDKTVS  263 (267)
Q Consensus       239 --~~~~~~~~G~~~vi~~~~~~~~~~~  263 (267)
                        |+++++++|++++ |+++  +++.+
T Consensus       212 ~~~~~~~~~lGa~~v-~~~~--~~~~~  235 (357)
T 2b5w_A          212 DPTIDIIEELDATYV-DSRQ--TPVED  235 (357)
T ss_dssp             CHHHHHHHHTTCEEE-ETTT--SCGGG
T ss_pred             HHHHHHHHHcCCccc-CCCc--cCHHH
Confidence              9999999999999 9887  66654

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=1.5e-42  Score=320.66  Aligned_cols=223  Identities=27%  Similarity=0.358  Sum_probs=195.1

Q ss_pred             cceeEEeecCCCCeEEEEeecCCC-CC-----CeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPP-KA-----WEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +|||+++.+++. ++++++|.|+| ++     +||||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|+
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~~---~~p~v~GhE~~G~V~~vG~   77 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIV---PKGHVLGHEITGEVVEKGS   77 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSCC---CTTCBCCCCEEEEEEEECT
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCCC---CCCcccCCceEEEEEEECC
Confidence            599999999876 99999999997 68     99999999999999999999986532   5799999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCC-----CCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRG-----YRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      +|++|++||||++.+..+|+.|++|++|.+++|++....     ...|... +               ...|+|+||+++
T Consensus        78 ~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~-~---------------~~~G~~aey~~v  141 (398)
T 2dph_A           78 DVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL-K---------------GWSGGQAEYVLV  141 (398)
T ss_dssp             TCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB-S---------------SCCCSSBSEEEE
T ss_pred             CCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc-C---------------CCCceeeeeEEe
Confidence            999999999999999999999999999999999872110     0012100 0               012499999999


Q ss_pred             ecc--ceEEcCCCCChhh----hhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          164 DIT--HVVKITPHIPLGI----ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       164 ~~~--~~~~iP~~~~~~~----aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      |.+  +++++|+++++++    |+.++++++|||+++ +..++++|++|||+|+|++|++++|+|+.+|+.+|+++++++
T Consensus       142 ~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~  220 (398)
T 2dph_A          142 PYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP  220 (398)
T ss_dssp             SSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             ccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence            987  8999999999998    888888999999986 788999999999999999999999999999998999999999


Q ss_pred             hhHHHHHHcCCCEEECCCCCCccc
Q 024496          238 EKFEIGKKFGITDFINPATCGDKT  261 (267)
Q Consensus       238 ~~~~~~~~~G~~~vi~~~~~~~~~  261 (267)
                      +++++++++|++ ++|+++  +++
T Consensus       221 ~~~~~a~~lGa~-~i~~~~--~~~  241 (398)
T 2dph_A          221 ERLKLLSDAGFE-TIDLRN--SAP  241 (398)
T ss_dssp             HHHHHHHTTTCE-EEETTS--SSC
T ss_pred             HHHHHHHHcCCc-EEcCCC--cch
Confidence            999999999996 899887  665

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=7.7e-42  Score=312.31  Aligned_cols=223  Identities=21%  Similarity=0.222  Sum_probs=194.2

Q ss_pred             ccccceeEEeecCC-CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           12 KVIRCKAAICRIPG-KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        12 ~~~~~~a~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      .|.+|||+++.+++ ++++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|++|
T Consensus        24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~P~v~GhE~~G~V~~vG~~v  102 (363)
T 3uog_A           24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLD-LAFPFVPASDMSGVVEAVGKSV  102 (363)
T ss_dssp             CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCcCcccceEEEEEEECCCC
Confidence            56679999999764 349999999999999999999999999999999999877643 2789999999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCC-CCCCCCCCccccccCCceecccccccceeeeEEeeccceE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR-PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVV  169 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~  169 (267)
                      ++|++||||++.+..      +|+.|. +.|........ .|...+|                   +|+||+++|.++++
T Consensus       103 ~~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~  156 (363)
T 3uog_A          103 TRFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPEGWFV  156 (363)
T ss_dssp             CSCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEGGGEE
T ss_pred             CCCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEechHHeE
Confidence            999999999987653      678888 88874321111 3333444                   99999999999999


Q ss_pred             EcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          170 KITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       170 ~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|+++++++||++++++.|||+++.+..++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|++
T Consensus       157 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  235 (363)
T 3uog_A          157 AAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGAD  235 (363)
T ss_dssp             ECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCC
Confidence            9999999999999999999999987788999999999999999999999999999999 999999999999999999999


Q ss_pred             EEECCCCCCcccccc
Q 024496          250 DFINPATCGDKTVSQ  264 (267)
Q Consensus       250 ~vi~~~~~~~~~~~~  264 (267)
                      +++|.++  +++.++
T Consensus       236 ~vi~~~~--~~~~~~  248 (363)
T 3uog_A          236 HGINRLE--EDWVER  248 (363)
T ss_dssp             EEEETTT--SCHHHH
T ss_pred             EEEcCCc--ccHHHH
Confidence            9999654  555443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-42  Score=319.86  Aligned_cols=221  Identities=28%  Similarity=0.392  Sum_probs=192.8

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCC-CCe------EEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPK-AWE------IRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      +|||+++..++. ++++++|.|+|+ ++|      |||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~p~v~GhE~~G~V~~vG   77 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA---QVGLVLGHEITGEVIEKG   77 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC---CTTCBCCCCEEEEEEEEC
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC---CCCcccCcccEEEEEEEC
Confidence            599999998876 999999999996 898      999999999999999999987542   578999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCC---CCCCCCCCCccccccCCceecccccccceeeeEEee
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGY---RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      ++|++|++||||++.+..+|+.|++|++|++++|++.....   ..|+...     ..          ..|+|+||+++|
T Consensus        78 ~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~-----~~----------~~G~~aey~~v~  142 (398)
T 1kol_A           78 RDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDM-----GD----------WTGGQAEYVLVP  142 (398)
T ss_dssp             TTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTS-----CC----------BCCCSBSEEEES
T ss_pred             CCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccC-----CC----------CCceeeeEEEec
Confidence            99999999999999888899999999999999998754210   0111000     00          124999999999


Q ss_pred             cc--ceEEcCCCCChhh----hhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          165 IT--HVVKITPHIPLGI----ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       165 ~~--~~~~iP~~~~~~~----aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..  +++++|+++++++    ++.+++++.|||+++ +..++++|++|||+|+|++|++++|+|+++|+++|++++++++
T Consensus       143 ~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~  221 (398)
T 1kol_A          143 YADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPA  221 (398)
T ss_dssp             SHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             chhCeEEECCCCcchhhhcccccccccHHHHHHHHH-HHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHH
Confidence            86  8999999999888    788888999999987 4789999999999999999999999999999988999999999


Q ss_pred             hHHHHHHcCCCEEECCCC
Q 024496          239 KFEIGKKFGITDFINPAT  256 (267)
Q Consensus       239 ~~~~~~~~G~~~vi~~~~  256 (267)
                      |+++++++|++ ++|+++
T Consensus       222 ~~~~a~~lGa~-~i~~~~  238 (398)
T 1kol_A          222 RLAHAKAQGFE-IADLSL  238 (398)
T ss_dssp             HHHHHHHTTCE-EEETTS
T ss_pred             HHHHHHHcCCc-EEccCC
Confidence            99999999997 788876

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=7.6e-42  Score=312.79  Aligned_cols=226  Identities=24%  Similarity=0.373  Sum_probs=193.9

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .+|+|++++...+.++++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|++|+
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~P~v~GhE~~G~V~~vG~~V~   90 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFS--MYPLVPGHEIVGEVTEVGSKVK   90 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCC--CSSBCCCCCEEEEEEEECTTCC
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCC--CCCEecccceEEEEEEECCCCC
Confidence            45667777776666669999999999999999999999999999999999876543  6899999999999999999999


Q ss_pred             ccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||||++.+. .+|+.|++|++|++++|+.....+ .+....|              ....|+|+||+++|.+++++
T Consensus        91 ~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~-~~~~~~g--------------~~~~G~~aey~~v~~~~~~~  155 (366)
T 1yqd_A           91 KVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTY-ASIYHDG--------------TITYGGYSNHMVANERYIIR  155 (366)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESS-SSBCTTS--------------CBCCCSSBSEEEEEGGGCEE
T ss_pred             cCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccc-cccccCC--------------CcCCCccccEEEEchhhEEE
Confidence            9999999987554 589999999999999996543221 1111111              01125999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCC-CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVE-VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~-~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      +|+++++++|+.+++++.|||+++ +..+++ +|++|||+|+|++|++++|+|+.+|+ +|+++++++++++.++ ++|+
T Consensus       156 ~P~~ls~~~aa~l~~~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa  233 (366)
T 1yqd_A          156 FPDNMPLDGGAPLLCAGITVYSPL-KYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGA  233 (366)
T ss_dssp             CCTTSCTTTTGGGGTHHHHHHHHH-HHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCC
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHH-HhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCC
Confidence            999999999999999999999975 457888 99999999999999999999999999 9999999999999887 8999


Q ss_pred             CEEECCCC
Q 024496          249 TDFINPAT  256 (267)
Q Consensus       249 ~~vi~~~~  256 (267)
                      ++++|+++
T Consensus       234 ~~v~~~~~  241 (366)
T 1yqd_A          234 DSFLVSRD  241 (366)
T ss_dssp             SEEEETTC
T ss_pred             ceEEeccC
Confidence            99999876

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=3.3e-40  Score=309.16  Aligned_cols=224  Identities=17%  Similarity=0.125  Sum_probs=193.4

Q ss_pred             CcCccccceeEEeecCC-------------CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHh--------------
Q 024496            9 KAGKVIRCKAAICRIPG-------------KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK--------------   61 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~-------------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~--------------   61 (267)
                      .+..|.+|||+++..++             ++++++++|.|+|+++||||||.+++||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            45689999999999998             249999999999999999999999999999985432              


Q ss_pred             --cCCCCCCCCCC-cccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCc
Q 024496           62 --SSTDLPKLPLP-VIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTS  138 (267)
Q Consensus        62 --g~~~~~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~  138 (267)
                        +.+... ..+| .++|||++|+|+++|++|++|++||||++.+...|+.|. |.++..+.|.+...   .|+..+   
T Consensus        98 ~~g~~~~~-~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~---  169 (447)
T 4a0s_A           98 RQGGWATR-HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETN---  169 (447)
T ss_dssp             TTCGGGGG-GCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSS---
T ss_pred             ccCccccc-cCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCC---
Confidence              111111 1467 699999999999999999999999999999888888887 44578899987664   444432   


Q ss_pred             cccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHH--HhCCCCCCEEEEEcC-CHHH
Q 024496          139 RFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK--VAGVEVGSTVAIFGL-GAVG  215 (267)
Q Consensus       139 ~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~--~~~~~~g~~VlI~G~-g~vG  215 (267)
                                     .|+|+||+++|.++++++|+++++++|+++++++.|||+++..  ..++++|++|||+|+ |++|
T Consensus       170 ---------------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG  234 (447)
T 4a0s_A          170 ---------------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLG  234 (447)
T ss_dssp             ---------------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ---------------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHH
Confidence                           1499999999999999999999999999999999999997753  488999999999998 9999


Q ss_pred             HHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          216 LAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       216 ~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      ++++|+|+++|+ +|++++++++++++++++|+++++|+.+
T Consensus       235 ~~a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~  274 (447)
T 4a0s_A          235 SYAIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAE  274 (447)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHH
T ss_pred             HHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEeccc
Confidence            999999999999 8899989999999999999999998765

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=3.2e-40  Score=310.24  Aligned_cols=228  Identities=18%  Similarity=0.153  Sum_probs=195.3

Q ss_pred             CcCccccceeEEeecC---------------CCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcC----------
Q 024496            9 KAGKVIRCKAAICRIP---------------GKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSS----------   63 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~---------------~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~----------   63 (267)
                      +.+.|.+|||+++..+               +++++++++|.|+|+++||||||.+++||++|++...+.          
T Consensus        24 ~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           24 ALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             HSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             cCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            3468899999999987               234899999999999999999999999999998764321          


Q ss_pred             ---CCC--CCCCCC-cccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCC
Q 024496           64 ---TDL--PKLPLP-VIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGT  137 (267)
Q Consensus        64 ---~~~--~~~~~p-~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~  137 (267)
                         ...  ....+| .++|||++|+|+++|++|++|++||+|++.+. .|..|..|..+..+.|++...   .|+..+  
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~-~c~~~~~~~~~~~~~c~~~~~---~G~~~~--  177 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCL-SVELESSDGHNDTMLDPEQRI---WGFETN--  177 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCE-ECCCCSGGGTTSGGGCTTCEE---TTTTSS--
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCC-cccccccccccccccCccccc---cccCCC--
Confidence               100  001467 69999999999999999999999999998543 688888999999999987665   444332  


Q ss_pred             ccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHH--hCCCCCCEEEEEcC-CHH
Q 024496          138 SRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKV--AGVEVGSTVAIFGL-GAV  214 (267)
Q Consensus       138 ~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~--~~~~~g~~VlI~G~-g~v  214 (267)
                                      .|+|+||+++|.++++++|+++++++|+++++++.|||+++...  .++++|++|||+|+ |++
T Consensus       178 ----------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~v  241 (456)
T 3krt_A          178 ----------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGL  241 (456)
T ss_dssp             ----------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHH
T ss_pred             ----------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHH
Confidence                            14999999999999999999999999999999999999977543  78999999999998 999


Q ss_pred             HHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCccc
Q 024496          215 GLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKT  261 (267)
Q Consensus       215 G~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  261 (267)
                      |++++|+|+++|+ +|++++++++|+++++++|+++++|+++  +++
T Consensus       242 G~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~--~d~  285 (456)
T 3krt_A          242 GSYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNA--EGY  285 (456)
T ss_dssp             HHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTT--TTC
T ss_pred             HHHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCc--Ccc
Confidence            9999999999999 8888889999999999999999999988  554

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=5.6e-40  Score=300.19  Aligned_cols=207  Identities=22%  Similarity=0.342  Sum_probs=181.4

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCC-CeEEEEEeeeeCChhhHHhHhc--CCCCCCCCC---CcccceeeEEEEEEecCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKA-WEIRIKILCTSLCHSDVTFWKS--STDLPKLPL---PVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~~~~~~~~---p~~~G~e~~G~V~~vG~~   89 (267)
                      |||+++.+++++++++++|.|+|++ +||||||.+++||++|++.+.|  .++..  .+   |.++|||++|+|++  ++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~--~~~~~p~v~G~E~~G~V~~--~~   76 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTL--PKGKDFLVLGHEAIGVVEE--SY   76 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC---------CCSCEECCSEEEEEECS--CC
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCC--CcCCCCCcCCcceEEEEEe--CC
Confidence            7999999988779999999999999 9999999999999999999998  55422  46   99999999999999  67


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCC--CCC-CCCCccccccCCceecccccccceeeeEEeecc
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP--NMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT  166 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~--g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~  166 (267)
                       ++|++||||++.+..+|+.|++|++|++++|++...   .  |.. .+                   |+|+||+++|.+
T Consensus        77 -~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~  133 (366)
T 2cdc_A           77 -HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMD-------------------GFMREWWYDDPK  133 (366)
T ss_dssp             -SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEEC-------------------CSCBSEEEECGG
T ss_pred             -CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCC-------------------CceeEEEEechH
Confidence             889999999999999999999999999999987543   2  222 23                   499999999999


Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHH--H--HhCCC--C-------CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAW--K--VAGVE--V-------GSTVAIFGLGAVGLAVAEGARLNRASKIIGV  233 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~--~--~~~~~--~-------g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~  233 (267)
                      +++++|++++ ++|+ +..+++|||+++.  +  ..+++  +       |++|||+|+|++|++++|+++.+|+ +|+++
T Consensus       134 ~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~  210 (366)
T 2cdc_A          134 YLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMA  210 (366)
T ss_dssp             GEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEE
T ss_pred             HeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEE
Confidence            9999999999 8775 5669999999876  4  77888  8       9999999999999999999999999 99999


Q ss_pred             cCCh---hhHHHHHHcCCCEEEC
Q 024496          234 DINP---EKFEIGKKFGITDFIN  253 (267)
Q Consensus       234 ~~~~---~~~~~~~~~G~~~vi~  253 (267)
                      ++++   +++++++++|++++ |
T Consensus       211 ~~~~~~~~~~~~~~~~ga~~v-~  232 (366)
T 2cdc_A          211 NRREPTEVEQTVIEETKTNYY-N  232 (366)
T ss_dssp             ESSCCCHHHHHHHHHHTCEEE-E
T ss_pred             eCCccchHHHHHHHHhCCcee-c
Confidence            9998   89999999999988 7

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=5.5e-39  Score=288.56  Aligned_cols=201  Identities=21%  Similarity=0.206  Sum_probs=176.2

Q ss_pred             CccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-----CCCCCCCCcccceeeEEEE
Q 024496           11 GKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-----DLPKLPLPVIFGHEAVGVV   83 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~~~~~~p~~~G~e~~G~V   83 (267)
                      +.|++|||+++.+++++  ++++++|.|+|+++||||||.+++||++|++.+.|..     ...  .+|.++|||++|+|
T Consensus         2 ~~m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~--~~p~v~G~E~~G~V   79 (321)
T 3tqh_A            2 NAMKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKN--NLPSGLGYDFSGEV   79 (321)
T ss_dssp             ---CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTT--SCSBCCCCEEEEEE
T ss_pred             CccccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccC--CCCCcccceeEEEE
Confidence            45678999999998887  8999999999999999999999999999999998832     122  68999999999999


Q ss_pred             EEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           84 ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        84 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      +++|+++++|++||||+..+..+                          ..+                   |+|+||+++
T Consensus        80 ~~vG~~v~~~~~GdrV~~~~~~~--------------------------~~~-------------------G~~aey~~v  114 (321)
T 3tqh_A           80 IELGSDVNNVNIGDKVMGIAGFP--------------------------DHP-------------------CCYAEYVCA  114 (321)
T ss_dssp             EEECTTCCSCCTTCEEEEECSTT--------------------------TCC-------------------CCSBSEEEE
T ss_pred             EEeCCCCCCCCCCCEEEEccCCC--------------------------CCC-------------------CcceEEEEe
Confidence            99999999999999998754211                          112                   499999999


Q ss_pred             eccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          164 DITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       164 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +.++++++|+++++++|+++++++.|||+++ +..++++|++|||+| +|++|++++|+|+.+|+ +|++++ +++++++
T Consensus       115 ~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~  191 (321)
T 3tqh_A          115 SPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAF  191 (321)
T ss_dssp             CGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHH
T ss_pred             cHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHH
Confidence            9999999999999999999999999999987 889999999999997 59999999999999999 899987 4667899


Q ss_pred             HHHcCCCEEECCCCCCcc-ccc
Q 024496          243 GKKFGITDFINPATCGDK-TVS  263 (267)
Q Consensus       243 ~~~~G~~~vi~~~~~~~~-~~~  263 (267)
                      ++++|+++++|+++  ++ +.+
T Consensus       192 ~~~lGa~~~i~~~~--~~~~~~  211 (321)
T 3tqh_A          192 LKALGAEQCINYHE--EDFLLA  211 (321)
T ss_dssp             HHHHTCSEEEETTT--SCHHHH
T ss_pred             HHHcCCCEEEeCCC--cchhhh
Confidence            99999999999988  65 443

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=3.7e-39  Score=288.89  Aligned_cols=190  Identities=17%  Similarity=0.179  Sum_probs=173.6

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |.+|||+++++..+.++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++
T Consensus         2 M~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~i~G~e~~G~V~~vG~~v~~   79 (315)
T 3goh_A            2 MEQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINW--SNGHVPGVDGAGVIVKVGAKVDS   79 (315)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCC--CTTCCCCSEEEEEEEEECTTSCG
T ss_pred             CcceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcC--CCCCEeeeeeEEEEEEeCCCCCC
Confidence            4579999999533349999999999999999999999999999999999987655  78999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||+..+.                           ...+                   |+|+||+++|.++++++|
T Consensus        80 ~~vGdrV~~~~~---------------------------~~~~-------------------G~~aey~~v~~~~~~~iP  113 (315)
T 3goh_A           80 KMLGRRVAYHTS---------------------------LKRH-------------------GSFAEFTVLNTDRVMTLP  113 (315)
T ss_dssp             GGTTCEEEEECC---------------------------TTSC-------------------CSSBSEEEEETTSEEECC
T ss_pred             CCCCCEEEEeCC---------------------------CCCC-------------------cccccEEEEcHHHhccCc
Confidence            999999987532                           1223                   499999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      +++++++||+++++++|||+++ +..++++|++|||+|+|++|++++|+|+++|+ +|++++ +++++++++++|+++++
T Consensus       114 ~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~  190 (315)
T 3goh_A          114 DNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLY  190 (315)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEE
T ss_pred             CCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEE
Confidence            9999999999999999999987 88999999999999999999999999999999 999999 89999999999999998


Q ss_pred             C
Q 024496          253 N  253 (267)
Q Consensus       253 ~  253 (267)
                      +
T Consensus       191 ~  191 (315)
T 3goh_A          191 R  191 (315)
T ss_dssp             S
T ss_pred             c
Confidence            4

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=3.3e-39  Score=293.85  Aligned_cols=205  Identities=19%  Similarity=0.185  Sum_probs=184.2

Q ss_pred             CCCcCccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEE
Q 024496            7 SPKAGKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVE   84 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~   84 (267)
                      +++...|.+|||+++.+++.|  ++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+
T Consensus        20 ~~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~i~G~E~~G~V~   98 (353)
T 4dup_A           20 FQSMSLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPK-DASPILGLELSGEIV   98 (353)
T ss_dssp             ---CCCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCT-TSCSSSCCEEEEEEE
T ss_pred             eecCCCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCC-CCCCccccccEEEEE
Confidence            345567889999999998766  89999999999999999999999999999999999876542 579999999999999


Q ss_pred             EecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee
Q 024496           85 SVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        85 ~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      ++|+++++|++||||+...                              .+                   |+|+||+++|
T Consensus        99 ~vG~~v~~~~vGdrV~~~~------------------------------~~-------------------G~~aey~~v~  129 (353)
T 4dup_A           99 GVGPGVSGYAVGDKVCGLA------------------------------NG-------------------GAYAEYCLLP  129 (353)
T ss_dssp             EECTTCCSCCTTCEEEEEC------------------------------SS-------------------CCSBSEEEEE
T ss_pred             EECCCCCCCCCCCEEEEec------------------------------CC-------------------CceeeEEEEc
Confidence            9999999999999997532                              12                   4999999999


Q ss_pred             ccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          165 ITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       165 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++++|+++++++|+.++++++|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.+
T Consensus       130 ~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  208 (353)
T 4dup_A          130 AGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEAC  208 (353)
T ss_dssp             GGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             HHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            99999999999999999999999999998878899999999999965 9999999999999999 899999999999999


Q ss_pred             HHcCCCEEECCCCCCcccccc
Q 024496          244 KKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       244 ~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      +++|+++++|+++  +++.++
T Consensus       209 ~~lGa~~~~~~~~--~~~~~~  227 (353)
T 4dup_A          209 ERLGAKRGINYRS--EDFAAV  227 (353)
T ss_dssp             HHHTCSEEEETTT--SCHHHH
T ss_pred             HhcCCCEEEeCCc--hHHHHH
Confidence            9999999999988  666544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=5e-39  Score=291.03  Aligned_cols=198  Identities=23%  Similarity=0.264  Sum_probs=181.6

Q ss_pred             ccceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           14 IRCKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        14 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      ++|||+++.++++|   ++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|+++
T Consensus         3 ~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~i~G~E~~G~V~~vG~~v   81 (340)
T 3gms_A            3 LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRI-PLPNIPGYEGVGIVENVGAFV   81 (340)
T ss_dssp             CEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTS-CSSBCCCSCCEEEEEEECTTS
T ss_pred             cccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCC-CCCCcCCcceEEEEEEeCCCC
Confidence            58999999999997   89999999999999999999999999999999999876432 789999999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||||+...                              .+                   |+|+||+++|.+++++
T Consensus        82 ~~~~vGdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~~~~  112 (340)
T 3gms_A           82 SRELIGKRVLPLR------------------------------GE-------------------GTWQEYVKTSADFVVP  112 (340)
T ss_dssp             CGGGTTCEEEECS------------------------------SS-------------------CSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEecC------------------------------CC-------------------ccceeEEEcCHHHeEE
Confidence            9999999997521                              12                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|+++++++|+++++...|+|+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|++
T Consensus       113 vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga~  191 (340)
T 3gms_A          113 IPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAA  191 (340)
T ss_dssp             CCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS
T ss_pred             CCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCCc
Confidence            99999999999999999999998888899999999999998 5999999999999999 999999999999999999999


Q ss_pred             EEECCCCCCcccccc
Q 024496          250 DFINPATCGDKTVSQ  264 (267)
Q Consensus       250 ~vi~~~~~~~~~~~~  264 (267)
                      +++|+++  +++.++
T Consensus       192 ~~~~~~~--~~~~~~  204 (340)
T 3gms_A          192 YVIDTST--APLYET  204 (340)
T ss_dssp             EEEETTT--SCHHHH
T ss_pred             EEEeCCc--ccHHHH
Confidence            9999988  665543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.8e-38  Score=286.59  Aligned_cols=198  Identities=24%  Similarity=0.251  Sum_probs=180.4

Q ss_pred             CccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496           11 GKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +.|.+|||+++.+++++  ++++++|.|+|+++||||||.+++||++|++.+.|.++.   .+|.++|||++|+|+++|+
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~---~~P~i~G~e~~G~V~~vG~   80 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC---EKPYVLGREASGTVVAKGK   80 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC---CSSEECCSEEEEEEEEECT
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC---CCCCccccceEEEEEEECC
Confidence            36788999999998876  899999999999999999999999999999999998763   5899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-ccc
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD-ITH  167 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~-~~~  167 (267)
                      ++++|++||||+...                               +                   |+|+||++++ .++
T Consensus        81 ~v~~~~~GdrV~~~~-------------------------------~-------------------G~~aey~~v~~~~~  110 (334)
T 3qwb_A           81 GVTNFEVGDQVAYIS-------------------------------N-------------------STFAQYSKISSQGP  110 (334)
T ss_dssp             TCCSCCTTCEEEEEC-------------------------------S-------------------SCSBSEEEEETTSS
T ss_pred             CCCCCCCCCEEEEee-------------------------------C-------------------CcceEEEEecCcce
Confidence            999999999997632                               1                   4899999999 999


Q ss_pred             eEEcCCCCChhh---hhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          168 VVKITPHIPLGI---ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       168 ~~~iP~~~~~~~---aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++|+++++++   |+.+++.+.+||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++++
T Consensus       111 ~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~  189 (334)
T 3qwb_A          111 VMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA  189 (334)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             EEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            999999999999   88888899999998777779999999999995 9999999999999999 999999999999999


Q ss_pred             HHcCCCEEECCCCCCcccccc
Q 024496          244 KKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       244 ~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      +++|+++++|+++  +++.++
T Consensus       190 ~~~ga~~~~~~~~--~~~~~~  208 (334)
T 3qwb_A          190 KEYGAEYLINASK--EDILRQ  208 (334)
T ss_dssp             HHTTCSEEEETTT--SCHHHH
T ss_pred             HHcCCcEEEeCCC--chHHHH
Confidence            9999999999988  665544

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-38  Score=286.54  Aligned_cols=202  Identities=23%  Similarity=0.271  Sum_probs=178.6

Q ss_pred             CccccceeEEeecCCCC--eEE-EEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           11 GKVIRCKAAICRIPGKP--LVI-EEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      ..|.+|||+++.+++.+  +++ +++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|
T Consensus        25 ~~~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~-~~~P~v~G~E~~G~V~~vG  103 (351)
T 1yb5_A           25 TGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRK-PLLPYTPGSDVAGVIEAVG  103 (351)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCC-CCSSBCCCSCEEEEEEEEC
T ss_pred             cCcceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC-CCCCCcCCceeEEEEEEEC
Confidence            34567999999987765  888 8999999999999999999999999999999876432 1679999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +++++|++||||+....                             .+                   |+|+||+++|.++
T Consensus       104 ~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~  135 (351)
T 1yb5_A          104 DNASAFKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHT  135 (351)
T ss_dssp             TTCTTCCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEeCC-----------------------------CC-------------------CcceeEEEECHHH
Confidence            99999999999976321                             12                   4899999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ++++|+++++++|++++++++|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++
T Consensus       136 ~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  214 (351)
T 1yb5_A          136 VYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN  214 (351)
T ss_dssp             EEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHT
T ss_pred             eEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHc
Confidence            99999999999999999999999998777889999999999997 9999999999999999 999999999999999999


Q ss_pred             CCCEEECCCCCCcccccc
Q 024496          247 GITDFINPATCGDKTVSQ  264 (267)
Q Consensus       247 G~~~vi~~~~~~~~~~~~  264 (267)
                      |++.++|+++  +++.++
T Consensus       215 ga~~~~d~~~--~~~~~~  230 (351)
T 1yb5_A          215 GAHEVFNHRE--VNYIDK  230 (351)
T ss_dssp             TCSEEEETTS--TTHHHH
T ss_pred             CCCEEEeCCC--chHHHH
Confidence            9999999887  555443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=2.6e-38  Score=284.65  Aligned_cols=196  Identities=24%  Similarity=0.251  Sum_probs=179.9

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++++++++  ++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++|
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~v~G~e~~G~V~~vG~~v~~~   79 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAP--FLPSGLGAEGAGVVEAVGDEVTRF   79 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCS--SSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCC--CCCCCCCceeEEEEEEECCCCCCC
Confidence            899999998887  8999999999999999999999999999999999987764  689999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||||+....                             .+                   |+|+||+++|.++++++|+
T Consensus        80 ~~GdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~~P~  111 (325)
T 3jyn_A           80 KVGDRVAYGTG-----------------------------PL-------------------GAYSEVHVLPEANLVKLAD  111 (325)
T ss_dssp             CTTCEEEESSS-----------------------------SS-------------------CCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEEecC-----------------------------CC-------------------ccccceEEecHHHeEECCC
Confidence            99999975321                             12                   4999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++|+.+++...|+|+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++++.++++|+++++
T Consensus       112 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~  190 (325)
T 3jyn_A          112 SVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETI  190 (325)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEE
T ss_pred             CCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence            99999999999999999998877889999999999995 9999999999999999 999999999999999999999999


Q ss_pred             CCCCCCcccccc
Q 024496          253 NPATCGDKTVSQ  264 (267)
Q Consensus       253 ~~~~~~~~~~~~  264 (267)
                      |+++  +++.++
T Consensus       191 ~~~~--~~~~~~  200 (325)
T 3jyn_A          191 DYSH--EDVAKR  200 (325)
T ss_dssp             ETTT--SCHHHH
T ss_pred             eCCC--ccHHHH
Confidence            9988  665543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=6.4e-38  Score=287.21  Aligned_cols=203  Identities=16%  Similarity=0.168  Sum_probs=175.2

Q ss_pred             ccccceeEEeecCCCCeEEE-EeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           12 KVIRCKAAICRIPGKPLVIE-EIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      .|.+|||+++..++. ++++ ++|.|+|+++||||||.+++||++|++.+.+.   .  ..|.++|||++|+|+++|++|
T Consensus         8 ~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~--~~p~v~G~e~~G~V~~vG~~v   81 (371)
T 3gqv_A            8 PPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---A--TPWAFLGTDYAGTVVAVGSDV   81 (371)
T ss_dssp             CCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------C--CTTSCCCSEEEEEEEEECTTC
T ss_pred             CchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---C--CCCccCccccEEEEEEeCCCC
Confidence            678899999999977 9998 99999999999999999999999999988763   2  568999999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||||+..       |..|..+               ...+                   |+|+||+++|.+++++
T Consensus        82 ~~~~~GdrV~~~-------~~~~~~~---------------~~~~-------------------G~~aey~~v~~~~~~~  120 (371)
T 3gqv_A           82 THIQVGDRVYGA-------QNEMCPR---------------TPDQ-------------------GAFSQYTVTRGRVWAK  120 (371)
T ss_dssp             CSCCTTCEEEEE-------CCTTCTT---------------CTTC-------------------CSSBSEEECCTTCEEE
T ss_pred             CCCCCCCEEEEe-------ccCCCCC---------------CCCC-------------------CcCcCeEEEchhheEE
Confidence            999999999643       4444322               1223                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHH-hCC-----------CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKV-AGV-----------EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~-~~~-----------~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+++++++|+++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+++|+ +|+++. ++
T Consensus       121 ~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~  198 (371)
T 3gqv_A          121 IPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SP  198 (371)
T ss_dssp             CCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CG
T ss_pred             CCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CH
Confidence            999999999999999999999988776 553           89999999998 8999999999999999 899887 78


Q ss_pred             hhHHHHHHcCCCEEECCCCCCccccccc
Q 024496          238 EKFEIGKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       238 ~~~~~~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      +|+++++++|+++++|+++  +++.+++
T Consensus       199 ~~~~~~~~lGa~~vi~~~~--~~~~~~v  224 (371)
T 3gqv_A          199 HNFDLAKSRGAEEVFDYRA--PNLAQTI  224 (371)
T ss_dssp             GGHHHHHHTTCSEEEETTS--TTHHHHH
T ss_pred             HHHHHHHHcCCcEEEECCC--chHHHHH
Confidence            9999999999999999988  7765543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=2.8e-38  Score=286.59  Aligned_cols=197  Identities=22%  Similarity=0.222  Sum_probs=178.7

Q ss_pred             CCcCccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEE
Q 024496            8 PKAGKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVES   85 (267)
Q Consensus         8 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~   85 (267)
                      .++..|.+|||+++..++.|  ++++++|.|+|++|||||||.+++||++|++.+.|.++... .+|.++|||++|+|++
T Consensus        14 ~~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~v~G~E~~G~V~~   92 (342)
T 4eye_A           14 AQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKM-EPPFVPGIETAGVVRS   92 (342)
T ss_dssp             ----CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCC-CSSBCCCSEEEEEEEE
T ss_pred             ccccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCC-CCCCccceeEEEEEEE
Confidence            34668999999999987776  89999999999999999999999999999999999875432 6899999999999999


Q ss_pred             ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      +|++++ |++||||+....                              +                   |+|+||++++.
T Consensus        93 vG~~v~-~~vGDrV~~~~~------------------------------~-------------------G~~aey~~v~~  122 (342)
T 4eye_A           93 APEGSG-IKPGDRVMAFNF------------------------------I-------------------GGYAERVAVAP  122 (342)
T ss_dssp             CCTTSS-CCTTCEEEEECS------------------------------S-------------------CCSBSEEEECG
T ss_pred             ECCCCC-CCCCCEEEEecC------------------------------C-------------------CcceEEEEEcH
Confidence            999999 999999976421                              2                   49999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++++|+++++++|+.++++++|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++++++++
T Consensus       123 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~  201 (342)
T 4eye_A          123 SNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVK  201 (342)
T ss_dssp             GGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             HHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            9999999999999999999999999998878899999999999998 9999999999999999 9999999999999999


Q ss_pred             HcCCCEEECCCC
Q 024496          245 KFGITDFINPAT  256 (267)
Q Consensus       245 ~~G~~~vi~~~~  256 (267)
                      ++|+++++|+++
T Consensus       202 ~~ga~~v~~~~~  213 (342)
T 4eye_A          202 SVGADIVLPLEE  213 (342)
T ss_dssp             HHTCSEEEESST
T ss_pred             hcCCcEEecCch
Confidence            999999998873

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.5e-38  Score=285.27  Aligned_cols=200  Identities=21%  Similarity=0.274  Sum_probs=176.2

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |.+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|..+.....+|.++|||++|+|+++|+++++
T Consensus         5 ~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   84 (343)
T 3gaz_A            5 TPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVDS   84 (343)
T ss_dssp             -CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             chhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCCC
Confidence            56899999999998899999999999999999999999999999999998754321268999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCC-CCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM-PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~-~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      |++||||+....                          |. ..+                   |+|+||+++|.++++++
T Consensus        85 ~~vGdrV~~~~~--------------------------g~~~~~-------------------G~~aey~~v~~~~~~~~  119 (343)
T 3gaz_A           85 FRVGDAVFGLTG--------------------------GVGGLQ-------------------GTHAQFAAVDARLLASK  119 (343)
T ss_dssp             CCTTCEEEEECC--------------------------SSTTCC-------------------CSSBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEEeC--------------------------CCCCCC-------------------cceeeEEEecHHHeeeC
Confidence            999999976321                          00 022                   49999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      |+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++ .+++++++++++|++.
T Consensus       120 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~  197 (343)
T 3gaz_A          120 PAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP  197 (343)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE
T ss_pred             CCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE
Confidence            9999999999999999999998778899999999999995 9999999999999999 89999 7899999999999998


Q ss_pred             EECCCCCCccccc
Q 024496          251 FINPATCGDKTVS  263 (267)
Q Consensus       251 vi~~~~~~~~~~~  263 (267)
                       +| ++  +++.+
T Consensus       198 -i~-~~--~~~~~  206 (343)
T 3gaz_A          198 -ID-AS--REPED  206 (343)
T ss_dssp             -EE-TT--SCHHH
T ss_pred             -ec-cC--CCHHH
Confidence             77 44  44433

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=8.8e-38  Score=285.61  Aligned_cols=197  Identities=22%  Similarity=0.213  Sum_probs=175.7

Q ss_pred             CccccceeEEeecC---CCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEE
Q 024496           11 GKVIRCKAAICRIP---GKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVES   85 (267)
Q Consensus        11 ~~~~~~~a~~~~~~---~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~   85 (267)
                      ..|++|||+++.++   +.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|++
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~v~G~E~~G~V~~   95 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDG--TDWKVIGYDAAGIVSA   95 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC----CCSBCCCCCEEEEEEE
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCC--CCCCcccceeEEEEEE
Confidence            36788999999876   333  8999999999999999999999999999999999987654  7899999999999999


Q ss_pred             ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      +|++|++|++||||+...                           +...+                   |+|+||+++|.
T Consensus        96 vG~~v~~~~vGdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~  129 (363)
T 4dvj_A           96 VGPDVTLFRPGDEVFYAG---------------------------SIIRP-------------------GTNAEFHLVDE  129 (363)
T ss_dssp             ECTTCCSCCTTCEEEECC---------------------------CTTSC-------------------CSCBSEEEEEG
T ss_pred             eCCCCCCCCCCCEEEEcc---------------------------CCCCC-------------------ccceEEEEeCH
Confidence            999999999999997632                           11223                   49999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC-----CCCEEEEEc-CCHHHHHHHHHHHHc-CCCeEEEEcCChh
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE-----VGSTVAIFG-LGAVGLAVAEGARLN-RASKIIGVDINPE  238 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~-----~g~~VlI~G-~g~vG~~a~~la~~~-g~~~vi~~~~~~~  238 (267)
                      ++++++|+++++++||++++++.|||+++.+..+++     +|++|||+| +|++|++++|+|+++ |+ +|++++++++
T Consensus       130 ~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~  208 (363)
T 4dvj_A          130 RIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPE  208 (363)
T ss_dssp             GGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHH
T ss_pred             HHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHH
Confidence            999999999999999999999999999887888888     899999998 599999999999985 77 9999999999


Q ss_pred             hHHHHHHcCCCEEECCCC
Q 024496          239 KFEIGKKFGITDFINPAT  256 (267)
Q Consensus       239 ~~~~~~~~G~~~vi~~~~  256 (267)
                      ++++++++|+++++|+++
T Consensus       209 ~~~~~~~lGad~vi~~~~  226 (363)
T 4dvj_A          209 TQEWVKSLGAHHVIDHSK  226 (363)
T ss_dssp             HHHHHHHTTCSEEECTTS
T ss_pred             HHHHHHHcCCCEEEeCCC
Confidence            999999999999999875

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=1.6e-37  Score=281.81  Aligned_cols=192  Identities=26%  Similarity=0.289  Sum_probs=173.9

Q ss_pred             ccceeEEeecCC-----CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496           14 IRCKAAICRIPG-----KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        14 ~~~~a~~~~~~~-----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |+|||++++++|     +.++++++|.|+|+++||||||.+++||++|++.+.|..  .  .+|.++|||++|+|+++|+
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~--~--~~p~i~G~e~~G~V~~vG~   76 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV--S--KAPRVLGFDAIGVVESVGN   76 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC--S--SSCBCCCCCEEEEEEEECT
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC--C--CCCcCcCCccEEEEEEeCC
Confidence            589999999876     349999999999999999999999999999999998872  2  6899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccce
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHV  168 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  168 (267)
                      ++++|++||||+....                           ...+                   |+|+||+++|.+++
T Consensus        77 ~v~~~~~GdrV~~~~~---------------------------~~~~-------------------G~~aey~~v~~~~~  110 (346)
T 3fbg_A           77 EVTMFNQGDIVYYSGS---------------------------PDQN-------------------GSNAEYQLINERLV  110 (346)
T ss_dssp             TCCSCCTTCEEEECCC---------------------------TTSC-------------------CSSBSEEEEEGGGE
T ss_pred             CCCcCCCCCEEEEcCC---------------------------CCCC-------------------cceeEEEEEChHHe
Confidence            9999999999976321                           1122                   49999999999999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCC------CCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVE------VGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~------~g~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      +++|+++++++|+++++++.|||+++.+..+++      +|++|||+| +|++|++++|+|+.+|+ +|+++++++++++
T Consensus       111 ~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~  189 (346)
T 3fbg_A          111 AKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIE  189 (346)
T ss_dssp             EECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHH
T ss_pred             EECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            999999999999999999999999888888888      999999995 59999999999999999 9999999999999


Q ss_pred             HHHHcCCCEEECCCC
Q 024496          242 IGKKFGITDFINPAT  256 (267)
Q Consensus       242 ~~~~~G~~~vi~~~~  256 (267)
                      +++++|+++++|+++
T Consensus       190 ~~~~lGa~~vi~~~~  204 (346)
T 3fbg_A          190 WTKKMGADIVLNHKE  204 (346)
T ss_dssp             HHHHHTCSEEECTTS
T ss_pred             HHHhcCCcEEEECCc
Confidence            999999999999875

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=3.5e-38  Score=286.44  Aligned_cols=207  Identities=15%  Similarity=0.139  Sum_probs=174.7

Q ss_pred             CCCcCccccceeEEee--c---CCCCeEEEEe---------ecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCC
Q 024496            7 SPKAGKVIRCKAAICR--I---PGKPLVIEEI---------EVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLP   72 (267)
Q Consensus         7 ~~~~~~~~~~~a~~~~--~---~~~~~~~~~~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p   72 (267)
                      |++...|.+|||++++  +   ..+.++++++         |.|+|+++||||||.+++||++|++.+.|.++... .+|
T Consensus         2 Ms~m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~-~~p   80 (349)
T 3pi7_A            2 MSPMTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPR-VKG   80 (349)
T ss_dssp             ---CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCB-CTT
T ss_pred             CCCCCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCC-CCC
Confidence            3344568889999999  3   2233777777         99999999999999999999999999999875432 689


Q ss_pred             cccceeeEEEEEEecCCC-cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccc
Q 024496           73 VIFGHEAVGVVESVGEYV-EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHF  151 (267)
Q Consensus        73 ~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~  151 (267)
                      .++|||++|+|+++|++| ++|++||||+...                           |...+                
T Consensus        81 ~v~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~---------------------------g~~~~----------------  117 (349)
T 3pi7_A           81 RPAGFEGVGTIVAGGDEPYAKSLVGKRVAFAT---------------------------GLSNW----------------  117 (349)
T ss_dssp             SBCCSEEEEEEEEECSSHHHHHHTTCEEEEEC---------------------------TTSSC----------------
T ss_pred             CCccceEEEEEEEECCCccCCCCCCCEEEEec---------------------------cCCCC----------------
Confidence            999999999999999999 9999999998752                           22223                


Q ss_pred             ccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCC-CEEEEEc-CCHHHHHHHHHHHHcCCCe
Q 024496          152 LNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVG-STVAIFG-LGAVGLAVAEGARLNRASK  229 (267)
Q Consensus       152 ~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g-~~VlI~G-~g~vG~~a~~la~~~g~~~  229 (267)
                         |+|+||+++|.++++++|+++++++|+.+++...|||+ +.+..+ +++ ++|+|+| +|++|++++|+|+.+|+ +
T Consensus       118 ---G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~  191 (349)
T 3pi7_A          118 ---GSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-R  191 (349)
T ss_dssp             ---CSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-E
T ss_pred             ---ccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-E
Confidence               49999999999999999999999999999999999996 556666 666 6888885 59999999999999999 9


Q ss_pred             EEEEcCChhhHHHHHHcCCCEEECCCCCCccccccc
Q 024496          230 IIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       230 vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      |++++++++++++++++|+++++|+++  +++.+++
T Consensus       192 Vi~~~~~~~~~~~~~~~Ga~~~~~~~~--~~~~~~v  225 (349)
T 3pi7_A          192 PIVTVRRDEQIALLKDIGAAHVLNEKA--PDFEATL  225 (349)
T ss_dssp             EEEEESCGGGHHHHHHHTCSEEEETTS--TTHHHHH
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEECCc--HHHHHHH
Confidence            999999999999999999999999988  6665543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=1.8e-37  Score=282.49  Aligned_cols=202  Identities=21%  Similarity=0.223  Sum_probs=178.2

Q ss_pred             cCccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           10 AGKVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        10 ~~~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      ...|.+|||+++..++.+  ++++++|.|.|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|
T Consensus        17 ~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~-~~p~v~G~E~~G~V~~vG   95 (354)
T 2j8z_A           17 NLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPP-GASNILGLEASGHVAELG   95 (354)
T ss_dssp             ----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCT-TSCSSSCSEEEEEEEEEC
T ss_pred             ccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCC-CCCcccceeeEEEEEEEC
Confidence            347788999999988864  88999999999999999999999999999999998765432 578999999999999999


Q ss_pred             CCC-cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc
Q 024496           88 EYV-EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT  166 (267)
Q Consensus        88 ~~v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~  166 (267)
                      ++| ++|++||||+....                              +                   |+|+||+++|.+
T Consensus        96 ~~v~~~~~vGdrV~~~~~------------------------------~-------------------G~~aey~~v~~~  126 (354)
T 2j8z_A           96 PGCQGHWKIGDTAMALLP------------------------------G-------------------GGQAQYVTVPEG  126 (354)
T ss_dssp             SCC--CCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGG
T ss_pred             CCcCCCCCCCCEEEEecC------------------------------C-------------------CcceeEEEeCHH
Confidence            999 99999999976321                              1                   389999999999


Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +++++|+++++++|++++++++|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.+++
T Consensus       127 ~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          127 LLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             GEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             HcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            999999999999999999999999998777889999999999985 9999999999999999 99999999999999999


Q ss_pred             cCCCEEECCCCCCcccccc
Q 024496          246 FGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       246 ~G~~~vi~~~~~~~~~~~~  264 (267)
                      +|++.++|+++  +++.++
T Consensus       206 ~g~~~~~~~~~--~~~~~~  222 (354)
T 2j8z_A          206 LGAAAGFNYKK--EDFSEA  222 (354)
T ss_dssp             HTCSEEEETTT--SCHHHH
T ss_pred             cCCcEEEecCC--hHHHHH
Confidence            99999999887  555443

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.8e-37  Score=281.84  Aligned_cols=196  Identities=21%  Similarity=0.298  Sum_probs=175.6

Q ss_pred             ccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           14 IRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        14 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      |+|||+++++++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|++++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~v~G~e~~G~V~~vG~~v~   80 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPP-KTPLVPGFECSGIVEALGDSVK   80 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCC-CSSBCCCSEEEEEEEEECTTCC
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCC-CCCccccceeEEEEEEeCCCCC
Confidence            68999999999864  89999999999999999999999999999999999875432 7899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||||+....                              +                   |+|+||+++|.++++++
T Consensus        81 ~~~~GdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~i  111 (349)
T 4a27_A           81 GYEIGDRVMAFVN------------------------------Y-------------------NAWAEVVCTPVEFVYKI  111 (349)
T ss_dssp             SCCTTCEEEEECS------------------------------S-------------------CCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEecC------------------------------C-------------------CcceEEEEecHHHeEEC
Confidence            9999999976421                              2                   38999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      |+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|..+|++++ ++++++.++ +|+++
T Consensus       112 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~  189 (349)
T 4a27_A          112 PDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTH  189 (349)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcE
Confidence            9999999999999999999998878899999999999998 99999999999999765999988 567888887 99999


Q ss_pred             EECCCCCCcccccc
Q 024496          251 FINPATCGDKTVSQ  264 (267)
Q Consensus       251 vi~~~~~~~~~~~~  264 (267)
                      ++| ++  +++.++
T Consensus       190 ~~~-~~--~~~~~~  200 (349)
T 4a27_A          190 LFD-RN--ADYVQE  200 (349)
T ss_dssp             EEE-TT--SCHHHH
T ss_pred             EEc-CC--ccHHHH
Confidence            999 55  555544

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=4.2e-37  Score=276.21  Aligned_cols=194  Identities=15%  Similarity=0.131  Sum_probs=171.6

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||++++++++|  ++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|  +++|
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~v~G~E~~G~V~~~G--v~~~   77 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIR-HFPMIPGIDFAGTVHASE--DPRF   77 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCC-SSSBCCCSEEEEEEEEES--STTC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCC-CCCccccceeEEEEEEeC--CCCC
Confidence            899999999987  78899999999999999999999999999999999876432 789999999999999998  5789


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||||++.+.                        ..|...+|                   +|+||+++|.++++++|+
T Consensus        78 ~vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~iP~  114 (324)
T 3nx4_A           78 HAGQEVLLTGW------------------------GVGENHWG-------------------GLAERARVKGDWLVALPA  114 (324)
T ss_dssp             CTTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCT
T ss_pred             CCCCEEEEccc------------------------ccCCCCCC-------------------ceeeEEecCHHHcEECCC
Confidence            99999987531                        12333334                   999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHH--HHhCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAW--KVAGVEVGS-TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~--~~~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++++|+++++.+.|||.++.  ...++++++ +|||+|+ |++|++++|+|+++|+ +|++++++++|+++++++|++
T Consensus       115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~  193 (324)
T 3nx4_A          115 GLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGAN  193 (324)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCS
T ss_pred             CCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCC
Confidence            9999999999999999998765  445676633 4999998 9999999999999999 999999999999999999999


Q ss_pred             EEECCCC
Q 024496          250 DFINPAT  256 (267)
Q Consensus       250 ~vi~~~~  256 (267)
                      +++|+++
T Consensus       194 ~vi~~~~  200 (324)
T 3nx4_A          194 RILSRDE  200 (324)
T ss_dssp             EEEEGGG
T ss_pred             EEEecCC
Confidence            9999877

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=8.7e-37  Score=278.16  Aligned_cols=196  Identities=22%  Similarity=0.308  Sum_probs=171.6

Q ss_pred             CccccceeEEeecCCCC---eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEec
Q 024496           11 GKVIRCKAAICRIPGKP---LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVG   87 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG   87 (267)
                      ..|.+|||+++.+++.+   ++++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~-~~P~v~G~E~~G~V~~vG  100 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLP-ELPAVGGNEGVAQVVAVG  100 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCC-CSSEECCSCCEEEEEEEC
T ss_pred             hCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCC-CCCccccceEEEEEEEeC
Confidence            35667999999999886   88999999999999999999999999999999998765431 579999999999999999


Q ss_pred             CCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           88 EYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        88 ~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      +++++|++||||+..+.                             .+                   |+|+||+++|.++
T Consensus       101 ~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~  132 (357)
T 1zsy_A          101 SNVTGLKPGDWVIPANA-----------------------------GL-------------------GTWRTEAVFSEEA  132 (357)
T ss_dssp             TTCCSCCTTCEEEESSS-----------------------------CS-------------------CCSBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEcCC-----------------------------CC-------------------ccceeEEecCHHH
Confidence            99999999999976321                             02                   4999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-h---hhHHH
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-P---EKFEI  242 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~---~~~~~  242 (267)
                      ++++|+++++++|+++++.+.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +++++.+. +   +++++
T Consensus       133 ~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~  211 (357)
T 1zsy_A          133 LIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDRPDIQKLSDR  211 (357)
T ss_dssp             EEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCCSCHHHHHHH
T ss_pred             cEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCccchHHHHHH
Confidence            99999999999999999889999998777789999999999997 9999999999999999 66655433 2   35678


Q ss_pred             HHHcCCCEEECCCC
Q 024496          243 GKKFGITDFINPAT  256 (267)
Q Consensus       243 ~~~~G~~~vi~~~~  256 (267)
                      ++++|+++++|+++
T Consensus       212 ~~~lGa~~vi~~~~  225 (357)
T 1zsy_A          212 LKSLGAEHVITEEE  225 (357)
T ss_dssp             HHHTTCSEEEEHHH
T ss_pred             HHhcCCcEEEecCc
Confidence            89999999998753

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=1.6e-36  Score=278.03  Aligned_cols=204  Identities=22%  Similarity=0.224  Sum_probs=176.5

Q ss_pred             CccccceeEEeecCCCC--eEE-EEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCC-------------CCCCCCCc
Q 024496           11 GKVIRCKAAICRIPGKP--LVI-EEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTD-------------LPKLPLPV   73 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~--~~~-~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-------------~~~~~~p~   73 (267)
                      ..+++|||+++..++.+  +++ +++|.|.| +++||||||.+++||++|++.+.|..+             ....++|.
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P~   96 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPL   96 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCSB
T ss_pred             ccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCCc
Confidence            35678999999998764  788 99999985 999999999999999999999987531             11014799


Q ss_pred             ccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 024496           74 IFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLN  153 (267)
Q Consensus        74 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  153 (267)
                      ++|||++|+|+++|++|++|++||||+..+.                           ...+                  
T Consensus        97 v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~---------------------------~~~~------------------  131 (375)
T 2vn8_A           97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVP---------------------------PWKQ------------------  131 (375)
T ss_dssp             CCCCEEEEEEEEECTTCCSCCTTCEEEEECC---------------------------TTSC------------------
T ss_pred             ccceeeeEEEEEeCCCCCCCCCCCEEEEecC---------------------------CCCC------------------
Confidence            9999999999999999999999999987532                           0112                  


Q ss_pred             ccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhC----CCCCCEEEEEcC-CHHHHHHHHHHHHcCCC
Q 024496          154 ISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAG----VEVGSTVAIFGL-GAVGLAVAEGARLNRAS  228 (267)
Q Consensus       154 ~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~----~~~g~~VlI~G~-g~vG~~a~~la~~~g~~  228 (267)
                       |+|+||+++|.++++++|+++++++|+++++++.|||+++.+..+    +++|++|||+|+ |++|++++|+|+.+|+ 
T Consensus       132 -G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-  209 (375)
T 2vn8_A          132 -GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA-  209 (375)
T ss_dssp             -CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC-
T ss_pred             -ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC-
Confidence             499999999999999999999999999999999999998766788    999999999995 9999999999999999 


Q ss_pred             eEEEEcCChhhHHHHHHcCCCEEECCCCCCcccccc
Q 024496          229 KIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       229 ~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      +|++++ +++++++++++|+++++|+++  +++.++
T Consensus       210 ~Vi~~~-~~~~~~~~~~lGa~~v~~~~~--~~~~~~  242 (375)
T 2vn8_A          210 HVTAVC-SQDASELVRKLGADDVIDYKS--GSVEEQ  242 (375)
T ss_dssp             EEEEEE-CGGGHHHHHHTTCSEEEETTS--SCHHHH
T ss_pred             EEEEEe-ChHHHHHHHHcCCCEEEECCc--hHHHHH
Confidence            899998 578999999999999999987  665443

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=4.1e-37  Score=280.62  Aligned_cols=194  Identities=18%  Similarity=0.181  Sum_probs=170.7

Q ss_pred             cccceeEEeecCCCC---eEEEEeecCCCC--CCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCC---------ccccee
Q 024496           13 VIRCKAAICRIPGKP---LVIEEIEVEPPK--AWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLP---------VIFGHE   78 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~---~~~~~~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p---------~~~G~e   78 (267)
                      |++|||+++.+++++   ++++++|.|.|+  ++||||||.+++||++|++.+.|.++.. ..+|         .++|||
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~P~~~~~~~p~~i~G~E   79 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK-PAKTTGFGTTEPAAPCGNE   79 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCC-CCCBSTTCCSSCBEECCSC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCC-CCCCccccccCcccccCce
Confidence            578999999999875   899999999887  9999999999999999999999876532 1466         899999


Q ss_pred             eEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 024496           79 AVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFT  158 (267)
Q Consensus        79 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a  158 (267)
                      ++|+|+++|++|++|++||||+....                             .+                   |+|+
T Consensus        80 ~~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~~-------------------G~~a  111 (364)
T 1gu7_A           80 GLFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWR  111 (364)
T ss_dssp             CEEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSB
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEecCC-----------------------------CC-------------------Ccch
Confidence            99999999999999999999976421                             11                   4999


Q ss_pred             eeEEeeccceEEcCC-----------CCChhhhhhcchhhhhHHHHHHHHhCCCCC-CEEEEEcC-CHHHHHHHHHHHHc
Q 024496          159 EYSVVDITHVVKITP-----------HIPLGIACLLSCGVSTGVGAAWKVAGVEVG-STVAIFGL-GAVGLAVAEGARLN  225 (267)
Q Consensus       159 ~y~~v~~~~~~~iP~-----------~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g-~~VlI~G~-g~vG~~a~~la~~~  225 (267)
                      ||+++|.++++++|+           ++++++|+++++++.|||+++.+..++++| ++|||+|+ |++|++++|+|+.+
T Consensus       112 ey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~  191 (364)
T 1gu7_A          112 THALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL  191 (364)
T ss_dssp             SEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH
T ss_pred             heEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHC
Confidence            999999999999998           899999999999999999987665789999 99999997 99999999999999


Q ss_pred             CCCeEEEEcCChhh----HHHHHHcCCCEEECCCC
Q 024496          226 RASKIIGVDINPEK----FEIGKKFGITDFINPAT  256 (267)
Q Consensus       226 g~~~vi~~~~~~~~----~~~~~~~G~~~vi~~~~  256 (267)
                      |+ ++++++++.++    +++++++|+++++|+++
T Consensus       192 Ga-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~  225 (364)
T 1gu7_A          192 NF-NSISVIRDRPNLDEVVASLKELGATQVITEDQ  225 (364)
T ss_dssp             TC-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHH
T ss_pred             CC-EEEEEecCccccHHHHHHHHhcCCeEEEecCc
Confidence            99 88888766554    67788999999999863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.2e-36  Score=273.76  Aligned_cols=196  Identities=21%  Similarity=0.186  Sum_probs=175.5

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++..++.+  ++++++|.|.|+++||||||.+++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++|
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~p~v~G~E~~G~V~~vG~~v~~~   79 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPP--SLPSGLGTEAAGIVSKVGSGVKHI   79 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCS--SSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC--CCCCCCCceeEEEEEEECCCCCCC
Confidence            899999987765  8899999999999999999999999999999999876533  589999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||||.. .                           | ..+                   |+|+||+++|.++++++|+
T Consensus        80 ~~GdrV~~-~---------------------------g-~~~-------------------G~~aey~~v~~~~~~~iP~  111 (327)
T 1qor_A           80 KAGDRVVY-A---------------------------Q-SAL-------------------GAYSSVHNIIADKAAILPA  111 (327)
T ss_dssp             CTTCEEEE-S---------------------------C-CSS-------------------CCSBSEEEEEGGGEEECCT
T ss_pred             CCCCEEEE-C---------------------------C-CCC-------------------ceeeeEEEecHHHcEECCC
Confidence            99999932 1                           0 012                   3899999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++++|+.++++++|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++++.++++|++.++
T Consensus       112 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~  190 (327)
T 1qor_A          112 AISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVI  190 (327)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEE
T ss_pred             CCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEE
Confidence            99999999999999999998776889999999999995 9999999999999999 999999999999999999999999


Q ss_pred             CCCCCCcccccc
Q 024496          253 NPATCGDKTVSQ  264 (267)
Q Consensus       253 ~~~~~~~~~~~~  264 (267)
                      |+++  +++.++
T Consensus       191 ~~~~--~~~~~~  200 (327)
T 1qor_A          191 NYRE--EDLVER  200 (327)
T ss_dssp             ETTT--SCHHHH
T ss_pred             ECCC--ccHHHH
Confidence            9887  555443

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.4e-36  Score=274.13  Aligned_cols=197  Identities=23%  Similarity=0.254  Sum_probs=171.8

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCC-CCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSST-DLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      |||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.+ +.....+|.++|||++|+|+++|+++++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999988764  8899999999999999999999999999999998865 2100157999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||+..+.                             .+                   |+|+||+++|.++++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~~-------------------G~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------PL-------------------GAYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------SC-------------------CCSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------CC-------------------CcceeEEEecHHHcEeCC
Confidence            999999965321                             02                   389999999999999999


Q ss_pred             CCCChhh--hhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          173 PHIPLGI--ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       173 ~~~~~~~--aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +++++++  |+++++++.|||+++.+..++++|++|||+|+ |++|++++++++.+|+ +|+++++++++++.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  89999999999998776789999999999996 9999999999999999 999999999999999999999


Q ss_pred             EEECCCCCCccccc
Q 024496          250 DFINPATCGDKTVS  263 (267)
Q Consensus       250 ~vi~~~~~~~~~~~  263 (267)
                      .++|+++  +++.+
T Consensus       193 ~~~d~~~--~~~~~  204 (333)
T 1wly_A          193 HTINYST--QDFAE  204 (333)
T ss_dssp             EEEETTT--SCHHH
T ss_pred             EEEECCC--HHHHH
Confidence            9999887  55544

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=5.2e-36  Score=273.66  Aligned_cols=196  Identities=17%  Similarity=0.178  Sum_probs=174.0

Q ss_pred             ccccceeEEeecCCC----CeEE-EEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496           12 KVIRCKAAICRIPGK----PLVI-EEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~----~~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      .+.+|||+++.+++.    .+++ +++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~-~~~P~i~G~E~~G~V~~v   98 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPS-VKPPFDIGFEGIGEVVAL   98 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTT-CCSCEECCSEEEEEEEEE
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCC-CCCCCCCCceeEEEEEEE
Confidence            466799999999875    3788 9999999999999999999999999999999876432 267999999999999999


Q ss_pred             cCCCc-ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           87 GEYVE-EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        87 G~~v~-~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      |++|+ +|++||||+...                               +                   |+|+||+++|.
T Consensus        99 G~~V~~~~~vGdrV~~~~-------------------------------~-------------------G~~aey~~v~~  128 (362)
T 2c0c_A           99 GLSASARYTVGQAVAYMA-------------------------------P-------------------GSFAEYTVVPA  128 (362)
T ss_dssp             CTTGGGTCCTTCEEEEEC-------------------------------S-------------------CCSBSEEEEEG
T ss_pred             CCCccCCCCCCCEEEEcc-------------------------------C-------------------CcceeEEEEcH
Confidence            99999 999999997642                               1                   48999999999


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++++|+..  .+++++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++
T Consensus       129 ~~~~~~P~~~--~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~  205 (362)
T 2c0c_A          129 SIATPVPSVK--PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLK  205 (362)
T ss_dssp             GGCEECSSSC--HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             HHeEECCCCc--hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence            9999999963  4566777899999998888889999999999995 9999999999999999 8999999999999999


Q ss_pred             HcCCCEEECCCCCCccccc
Q 024496          245 KFGITDFINPATCGDKTVS  263 (267)
Q Consensus       245 ~~G~~~vi~~~~~~~~~~~  263 (267)
                      ++|+++++|+++  +++.+
T Consensus       206 ~~Ga~~~~~~~~--~~~~~  222 (362)
T 2c0c_A          206 SLGCDRPINYKT--EPVGT  222 (362)
T ss_dssp             HTTCSEEEETTT--SCHHH
T ss_pred             HcCCcEEEecCC--hhHHH
Confidence            999999999987  55543

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=1.8e-36  Score=278.34  Aligned_cols=198  Identities=16%  Similarity=0.213  Sum_probs=173.5

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC------------------C-------
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------------------P-------   67 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~------------------~-------   67 (267)
                      +..||+++......+++++++|.|+|+++||||||.+++||++|++.+.|.++.                  +       
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            567999988655555999999999999999999999999999999999886310                  0       


Q ss_pred             --CCCCCcccceeeEEEEEEecCCC-cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 024496           68 --KLPLPVIFGHEAVGVVESVGEYV-EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELK  144 (267)
Q Consensus        68 --~~~~p~~~G~e~~G~V~~vG~~v-~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~  144 (267)
                        ...+|.++|||++|+|+++|++| ++|++||||+..+.                                        
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~~----------------------------------------  124 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGG----------------------------------------  124 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECCS----------------------------------------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecCC----------------------------------------
Confidence              11578999999999999999999 89999999976421                                        


Q ss_pred             CceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE--cCCHHHHHHHHHH
Q 024496          145 GDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF--GLGAVGLAVAEGA  222 (267)
Q Consensus       145 ~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~--G~g~vG~~a~~la  222 (267)
                                |+|+||+++|.++++++|+++++++|+.+++...|||++ .+... ++|++|||+  |+|++|++++|+|
T Consensus       125 ----------G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~-~~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          125 ----------AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGM-VETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ----------CCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHH-HHHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ----------CcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHH-HHHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                      489999999999999999999999999999999999985 45555 899999999  4599999999999


Q ss_pred             HHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCccccccc
Q 024496          223 RLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKTVSQV  265 (267)
Q Consensus       223 ~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~~~~v  265 (267)
                      +.+|+ +|++++++++|+++++++|+++++|+++  +++.+++
T Consensus       193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~--~~~~~~v  232 (379)
T 3iup_A          193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS--PTFMQDL  232 (379)
T ss_dssp             HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS--TTHHHHH
T ss_pred             HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC--hHHHHHH
Confidence            99999 8999999999999999999999999988  7765544

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.3e-35  Score=266.98  Aligned_cols=197  Identities=13%  Similarity=0.126  Sum_probs=170.0

Q ss_pred             cccceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           13 VIRCKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        13 ~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      |.+|||+++.+++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++  ++
T Consensus         1 m~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIV-KTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSC-CSSSBCCCSEEEEEEEEC--CS
T ss_pred             CCcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCC-CCCCcccCcceEEEEEec--CC
Confidence            34799999999884  37889999999999999999999999999999998865432 157999999999999995  46


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||||++...                        ..|...+                   |+|+||+++|.+++++
T Consensus        78 ~~~~vGdrV~~~~~------------------------~~g~~~~-------------------G~~aey~~v~~~~~~~  114 (328)
T 1xa0_A           78 PRFREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVP  114 (328)
T ss_dssp             SSCCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEE
T ss_pred             CCCCCCCEEEEccc------------------------cCCCCCC-------------------ccceeEEEechHHeEE
Confidence            78999999987431                        0222223                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHH--HHhCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAW--KVAGVEVGS-TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~--~~~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +|+++++++|+++++++.|+|.++.  +..++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       115 ~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l  193 (328)
T 1xa0_A          115 LPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVL  193 (328)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHT
T ss_pred             CCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc
Confidence            9999999999999999999998654  456889986 9999997 9999999999999999 799999999999999999


Q ss_pred             CCCEEECCCC
Q 024496          247 GITDFINPAT  256 (267)
Q Consensus       247 G~~~vi~~~~  256 (267)
                      |+++++|+++
T Consensus       194 Ga~~~i~~~~  203 (328)
T 1xa0_A          194 GAKEVLARED  203 (328)
T ss_dssp             TCSEEEECC-
T ss_pred             CCcEEEecCC
Confidence            9999999876

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.4e-35  Score=267.11  Aligned_cols=197  Identities=19%  Similarity=0.196  Sum_probs=170.7

Q ss_pred             cccceeEEeecCCC--CeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           13 VIRCKAAICRIPGK--PLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        13 ~~~~~a~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      |++|||+++.+++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++  ++
T Consensus         2 ~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~i~G~E~~G~V~~~--~v   78 (330)
T 1tt7_A            2 STLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIV-REYPLILGIDAAGTVVSS--ND   78 (330)
T ss_dssp             CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTC-SSCSEECCSEEEEEEEEC--SS
T ss_pred             CCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCc-CCCCccccceEEEEEEEc--CC
Confidence            45799999998873  38999999999999999999999999999999998875432 257999999999999996  46


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      ++|++||||++...                        ..|...+                   |+|+||+++|.+++++
T Consensus        79 ~~~~vGdrV~~~~~------------------------~~g~~~~-------------------G~~aey~~v~~~~~~~  115 (330)
T 1tt7_A           79 PRFAEGDEVIATSY------------------------ELGVSRD-------------------GGLSEYASVPGDWLVP  115 (330)
T ss_dssp             TTCCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSSEEECGGGEEE
T ss_pred             CCCCCCCEEEEccc------------------------ccCCCCC-------------------ccceeEEEecHHHeEE
Confidence            78999999987531                        0222223                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHH--HHhCCCCCC-EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAW--KVAGVEVGS-TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~--~~~~~~~g~-~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +|+++++++|+++++.+.|+|.++.  +..++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       116 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l  194 (330)
T 1tt7_A          116 LPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL  194 (330)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH
T ss_pred             CCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            9999999999999999999998654  446789986 9999997 9999999999999999 799999999999999999


Q ss_pred             CCCEEECCCC
Q 024496          247 GITDFINPAT  256 (267)
Q Consensus       247 G~~~vi~~~~  256 (267)
                      |+++++|+++
T Consensus       195 Ga~~v~~~~~  204 (330)
T 1tt7_A          195 GASEVISRED  204 (330)
T ss_dssp             TCSEEEEHHH
T ss_pred             CCcEEEECCC
Confidence            9999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=4.6e-34  Score=257.78  Aligned_cols=191  Identities=20%  Similarity=0.156  Sum_probs=167.9

Q ss_pred             ccceeEEeec------CCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCccccee----eEEEE
Q 024496           14 IRCKAAICRI------PGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHE----AVGVV   83 (267)
Q Consensus        14 ~~~~a~~~~~------~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e----~~G~V   83 (267)
                      ++||++++..      ..+.++++++|.|+|+++||||||.+++||++|.+.+.+....   ..|.++|||    ++|+|
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~---~~p~~~G~e~g~~~~G~V   82 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY---IPPVGIGEVMRALGVGKV   82 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS---SCCCCTTSBCCCEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc---CCCCCCCcccCCceEEEE
Confidence            5799999985      1233999999999999999999999999999999888765332   357777777    89999


Q ss_pred             EEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe
Q 024496           84 ESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVV  163 (267)
Q Consensus        84 ~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v  163 (267)
                      ++.  ++++|++||||+..                                                    |+|+||+++
T Consensus        83 ~~~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v  108 (336)
T 4b7c_A           83 LVS--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIG  108 (336)
T ss_dssp             EEE--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEE
T ss_pred             Eec--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEe
Confidence            994  58899999999752                                                    389999999


Q ss_pred             eccceEEcCCCCChhhh--hhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          164 DITHVVKITPHIPLGIA--CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       164 ~~~~~~~iP~~~~~~~a--a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      |.++++++|+++++.++  +.++++++|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|++++++++++
T Consensus       109 ~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~  187 (336)
T 4b7c_A          109 EPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKC  187 (336)
T ss_dssp             CCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHH
T ss_pred             chHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHH
Confidence            99999999999977776  7788899999998878899999999999998 9999999999999999 999999999999


Q ss_pred             HHH-HHcCCCEEECCCCCCcccccc
Q 024496          241 EIG-KKFGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       241 ~~~-~~~G~~~vi~~~~~~~~~~~~  264 (267)
                      +.+ +++|+++++|+++  +++.+.
T Consensus       188 ~~~~~~~g~~~~~~~~~--~~~~~~  210 (336)
T 4b7c_A          188 RFLVEELGFDGAIDYKN--EDLAAG  210 (336)
T ss_dssp             HHHHHTTCCSEEEETTT--SCHHHH
T ss_pred             HHHHHHcCCCEEEECCC--HHHHHH
Confidence            999 8999999999988  666544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=9.3e-34  Score=257.89  Aligned_cols=197  Identities=16%  Similarity=0.221  Sum_probs=169.2

Q ss_pred             cCccccceeEEe-ecC---CC----CeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhc----CCCCCCCCCCcccc
Q 024496           10 AGKVIRCKAAIC-RIP---GK----PLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKS----STDLPKLPLPVIFG   76 (267)
Q Consensus        10 ~~~~~~~~a~~~-~~~---~~----~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~~~~~~~~p~~~G   76 (267)
                      ...|++||++++ ..+   +.    .++++++|.|.| +++||||||.+++||++|++.+.+    .+..+ ..+|.++|
T Consensus         3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~-~~~p~v~G   81 (357)
T 2zb4_A            3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITP-WQLSQVVD   81 (357)
T ss_dssp             ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCC-CCBTSBCE
T ss_pred             CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCC-CCCCcccc
Confidence            356789999999 565   43    399999999999 999999999999999999987765    22211 15789999


Q ss_pred             eeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccc
Q 024496           77 HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISS  156 (267)
Q Consensus        77 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~  156 (267)
                      ||++|+|++  +++++|++||||+...                                                   |+
T Consensus        82 ~E~~G~V~~--~~v~~~~vGdrV~~~~---------------------------------------------------G~  108 (357)
T 2zb4_A           82 GGGIGIIEE--SKHTNLTKGDFVTSFY---------------------------------------------------WP  108 (357)
T ss_dssp             EEEEEEEEE--ECSTTCCTTCEEEEEE---------------------------------------------------EE
T ss_pred             ccEEEEEEe--cCCCCCCCCCEEEecC---------------------------------------------------CC
Confidence            999999999  8899999999997631                                                   38


Q ss_pred             eeeeEEeeccceEEcCCCC-----ChhhhhhcchhhhhHHHHHHHHhCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCC
Q 024496          157 FTEYSVVDITHVVKITPHI-----PLGIACLLSCGVSTGVGAAWKVAGVEVG--STVAIFGL-GAVGLAVAEGARLNRAS  228 (267)
Q Consensus       157 ~a~y~~v~~~~~~~iP~~~-----~~~~aa~l~~~~~ta~~a~~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~~  228 (267)
                      |+||+++|.++++++|+++     +++ ++.++++++|||+++.+..++++|  ++|||+|+ |++|++++++++.+|+.
T Consensus       109 ~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~  187 (357)
T 2zb4_A          109 WQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCS  187 (357)
T ss_dssp             SBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCS
T ss_pred             cEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCC
Confidence            9999999999999999998     555 667788999999988788999999  99999998 99999999999999998


Q ss_pred             eEEEEcCChhhHHHHHH-cCCCEEECCCCCCccccc
Q 024496          229 KIIGVDINPEKFEIGKK-FGITDFINPATCGDKTVS  263 (267)
Q Consensus       229 ~vi~~~~~~~~~~~~~~-~G~~~vi~~~~~~~~~~~  263 (267)
                      +|+++++++++++.+++ +|+++++|+++  +++.+
T Consensus       188 ~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~  221 (357)
T 2zb4_A          188 RVVGICGTHEKCILLTSELGFDAAINYKK--DNVAE  221 (357)
T ss_dssp             EEEEEESCHHHHHHHHHTSCCSEEEETTT--SCHHH
T ss_pred             eEEEEeCCHHHHHHHHHHcCCceEEecCc--hHHHH
Confidence            99999999999999887 99999999887  55543

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=7.3e-33  Score=246.54  Aligned_cols=178  Identities=20%  Similarity=0.214  Sum_probs=161.0

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++..++.+..++++|.|+|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+           
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~p~i~G~e~~G~V~-----------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRL-HPPFIPGMEVVGVVE-----------   68 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCC-CSSBCCCCEEEEEET-----------
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCC-CCCCcccceEEEEEE-----------
Confidence            79999999988656779999999999999999999999999999998765421 579999999999998           


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||||+....                              +                   |+|+||+++|.++++++|+++
T Consensus        69 GdrV~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~iP~~~   99 (302)
T 1iz0_A           69 GRRYAALVP------------------------------Q-------------------GGLAERVAVPKGALLPLPEGL   99 (302)
T ss_dssp             TEEEEEECS------------------------------S-------------------CCSBSEEEEEGGGCEECCTTC
T ss_pred             CcEEEEecC------------------------------C-------------------cceeeEEEEcHHHcEeCCCCC
Confidence            999976421                              2                   389999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++++|+.+++++.|||+++.+.. +++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|+++++|+
T Consensus       100 ~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~  177 (302)
T 1iz0_A          100 SPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATY  177 (302)
T ss_dssp             CHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEEC
Confidence            99999999999999999877667 999999999998 9999999999999999 99999999999999999999999987


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus       178 ~~  179 (302)
T 1iz0_A          178 AE  179 (302)
T ss_dssp             GG
T ss_pred             Cc
Confidence            53

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=3.9e-30  Score=231.72  Aligned_cols=184  Identities=22%  Similarity=0.216  Sum_probs=158.8

Q ss_pred             ccccceeEEeecC--C----CCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEE
Q 024496           12 KVIRCKAAICRIP--G----KPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVES   85 (267)
Q Consensus        12 ~~~~~~a~~~~~~--~----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~   85 (267)
                      .+++||++++.+.  +    +.++++++|.|+|+++||||||.+++||+.|... ..  + .  .+|.++|||++|+|++
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~--~-~--~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK--R-L--KEGAVMMGQQVARVVE   77 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT--T-C--CTTSBCCCCEEEEEEE
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC--c-C--CCCcccccceEEEEEe
Confidence            3678999999874  3    2389999999999999999999999999998732 11  1 1  5688999999999999


Q ss_pred             ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      .  ++++|++||||+..                                                    |+|+||+++|.
T Consensus        78 ~--~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~  103 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDG  103 (333)
T ss_dssp             E--SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESS
T ss_pred             c--CCCCCCCCCEEEec----------------------------------------------------CceEEEEEech
Confidence            5  57899999999752                                                    38999999999


Q ss_pred             cceEEcCCC----CChhh-hhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          166 THVVKITPH----IPLGI-ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       166 ~~~~~iP~~----~~~~~-aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++++|++    +++++ ++.++++++|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++
T Consensus       104 ~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~  182 (333)
T 1v3u_A          104 KGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEK  182 (333)
T ss_dssp             TTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHH
T ss_pred             HHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            999999997    88887 47888899999998877889999999999997 9999999999999999 99999999999


Q ss_pred             HHHHHHcCCCEEECCCC
Q 024496          240 FEIGKKFGITDFINPAT  256 (267)
Q Consensus       240 ~~~~~~~G~~~vi~~~~  256 (267)
                      ++.++++|++.++|+++
T Consensus       183 ~~~~~~~g~~~~~d~~~  199 (333)
T 1v3u_A          183 IAYLKQIGFDAAFNYKT  199 (333)
T ss_dssp             HHHHHHTTCSEEEETTS
T ss_pred             HHHHHhcCCcEEEecCC
Confidence            99999999999998865

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.97  E-value=1.5e-31  Score=266.30  Aligned_cols=189  Identities=20%  Similarity=0.206  Sum_probs=163.5

Q ss_pred             eeEEeecCCCC--eEEEEeec--CCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           17 KAAICRIPGKP--LVIEEIEV--EPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        17 ~a~~~~~~~~~--~~~~~~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      ..+.+..+|.+  +++++.+.  |+|+++||+|||.++|||++|++.+.|.++     .|.++|||++|+|+++|++|++
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~-----~~~~lG~E~aG~V~~vG~~V~~  285 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP-----GVASLGSEGAGVVVETGPGVTG  285 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS-----SCCCSCCCEEEEEEEECSSCCS
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC-----CCccccceeEEEEEEeCCCCCc
Confidence            44556666654  77777664  568999999999999999999999998764     3467999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      |++||||+....                                                  |+|+||++++.++++++|
T Consensus       286 ~~vGDrV~~~~~--------------------------------------------------G~~ae~~~v~~~~~~~iP  315 (795)
T 3slk_A          286 LAPGDRVMGMIP--------------------------------------------------KAFGPLAVADHRMVTRIP  315 (795)
T ss_dssp             SCTTCEEEECCS--------------------------------------------------SCSSSEEEEETTSEEECC
T ss_pred             CCCCCEEEEEec--------------------------------------------------CCCcCEEEeehHHEEECC
Confidence            999999975321                                                  489999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      +++++++|+++++.+.|+|+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++ |.+.++ +|++++
T Consensus       316 ~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v  392 (795)
T 3slk_A          316 AGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHL  392 (795)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGE
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhhe
Confidence            999999999999999999998878899999999999997 9999999999999999 899998665 655555 999999


Q ss_pred             ECCCCCCccccccc
Q 024496          252 INPATCGDKTVSQV  265 (267)
Q Consensus       252 i~~~~~~~~~~~~v  265 (267)
                      +|+++  +++.+++
T Consensus       393 ~~~~~--~~~~~~i  404 (795)
T 3slk_A          393 ASSRT--CDFEQQF  404 (795)
T ss_dssp             ECSSS--STHHHHH
T ss_pred             eecCC--hhHHHHH
Confidence            99988  6665543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.97  E-value=2.7e-30  Score=233.79  Aligned_cols=188  Identities=23%  Similarity=0.230  Sum_probs=154.7

Q ss_pred             ccceeEEeecCCC-CeEEE--EeecCC-CCCCeEEEEEeeeeCChhhHHhHhcCCCCCC--CCCCcccceeeEEEEEE--
Q 024496           14 IRCKAAICRIPGK-PLVIE--EIEVEP-PKAWEIRIKILCTSLCHSDVTFWKSSTDLPK--LPLPVIFGHEAVGVVES--   85 (267)
Q Consensus        14 ~~~~a~~~~~~~~-~~~~~--~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~--~~~p~~~G~e~~G~V~~--   85 (267)
                      ..|+++++..++. .++++  ++|.|. |+++||||||.++++|+.|. .+.|.+....  ..+|+++|||++|++++  
T Consensus         8 ~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G~~~~Gv   86 (345)
T 2j3h_A            8 VILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQGYGVSRI   86 (345)
T ss_dssp             EEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEEEEEEEE
T ss_pred             EEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeecceEEEE
Confidence            3344444455553 38888  888887 89999999999999988874 4555442210  13689999999999999  


Q ss_pred             ecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           86 VGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        86 vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      +|+++++|++||||+..                                                    |+|+||++++.
T Consensus        87 V~~~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~  114 (345)
T 2j3h_A           87 IESGHPDYKKGDLLWGI----------------------------------------------------VAWEEYSVITP  114 (345)
T ss_dssp             EEECSTTCCTTCEEEEE----------------------------------------------------EESBSEEEECC
T ss_pred             EecCCCCCCCCCEEEee----------------------------------------------------cCceeEEEecc
Confidence            99999999999999652                                                    38999999988


Q ss_pred             cc--eEEcCC---CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          166 TH--VVKITP---HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       166 ~~--~~~iP~---~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ..  ++++|+   +++++ +++++++++|||+++.+..++++|++|||+|+ |++|++++|+++.+|+ +|+++++++++
T Consensus       115 ~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~  192 (345)
T 2j3h_A          115 MTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEK  192 (345)
T ss_dssp             CTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHH
T ss_pred             cccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            76  999996   35555 67788899999998777889999999999997 9999999999999999 99999999999


Q ss_pred             HHHHH-HcCCCEEECCCC
Q 024496          240 FEIGK-KFGITDFINPAT  256 (267)
Q Consensus       240 ~~~~~-~~G~~~vi~~~~  256 (267)
                      ++.++ ++|+++++|+++
T Consensus       193 ~~~~~~~~g~~~~~d~~~  210 (345)
T 2j3h_A          193 VDLLKTKFGFDDAFNYKE  210 (345)
T ss_dssp             HHHHHHTSCCSEEEETTS
T ss_pred             HHHHHHHcCCceEEecCC
Confidence            99998 799999999876

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.86  E-value=1e-21  Score=213.92  Aligned_cols=163  Identities=16%  Similarity=0.078  Sum_probs=142.1

Q ss_pred             CCeEEEEEeeeeCChhhHHhHhcCCCCCC-----CCCCcccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccc
Q 024496           40 AWEIRIKILCTSLCHSDVTFWKSSTDLPK-----LPLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCK  114 (267)
Q Consensus        40 ~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-----~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~  114 (267)
                      ++||+|||.++++|+.|+++..|.++...     ...|.++|+|++|+|          ++||+|+....          
T Consensus      1559 ~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V----------~vGdrV~g~~~---------- 1618 (2512)
T 2vz8_A         1559 CQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRD----------ASGRRVMGMVP---------- 1618 (2512)
T ss_dssp             HHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEE----------TTSCCEEEECS----------
T ss_pred             CCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEE----------ccCCEEEEeec----------
Confidence            78999999999999999999998764220     124578999999987          37999965321          


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHH
Q 024496          115 SSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA  194 (267)
Q Consensus       115 ~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~  194 (267)
                                          +                   |+|+||+++|.+.++++|+++++++||+++++++|||+++
T Consensus      1619 --------------------~-------------------G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al 1659 (2512)
T 2vz8_A         1619 --------------------A-------------------EGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSL 1659 (2512)
T ss_dssp             --------------------S-------------------CCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHH
T ss_pred             --------------------C-------------------CceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHH
Confidence                                2                   3899999999999999999999999999999999999988


Q ss_pred             HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH----cCCCEEECCCCCCcccccc
Q 024496          195 WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK----FGITDFINPATCGDKTVSQ  264 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~----~G~~~vi~~~~~~~~~~~~  264 (267)
                      .+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|++.+++    +|+++++|+++  +++.++
T Consensus      1660 ~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~~~--~~~~~~ 1731 (2512)
T 2vz8_A         1660 VVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANSRD--TSFEQH 1731 (2512)
T ss_dssp             TTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEESSS--SHHHHH
T ss_pred             HHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecCCC--HHHHHH
Confidence            78889999999999986 9999999999999999 99999999999999986    78999999988  665544

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.47  E-value=5.9e-14  Score=116.54  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++++|+++++++|+++++++.|||+++.+..++++|++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4678999999999999999999999998767789999999999996 9999999999999999 9999999999999999


Q ss_pred             HcCCCEEECCCCCCcccc
Q 024496          245 KFGITDFINPATCGDKTV  262 (267)
Q Consensus       245 ~~G~~~vi~~~~~~~~~~  262 (267)
                      ++|++.++|.++  +++.
T Consensus        81 ~~g~~~~~d~~~--~~~~   96 (198)
T 1pqw_A           81 RLGVEYVGDSRS--VDFA   96 (198)
T ss_dssp             TTCCSEEEETTC--STHH
T ss_pred             HcCCCEEeeCCc--HHHH
Confidence            999999998877  5443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.67  E-value=5.5e-08  Score=82.51  Aligned_cols=116  Identities=16%  Similarity=0.068  Sum_probs=79.1

Q ss_pred             cCCCCEEEeec-------cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 024496           93 VKERDLVLPIF-------HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI  165 (267)
Q Consensus        93 ~~~Gd~V~~~~-------~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~  165 (267)
                      +++||+|++.+       ...|+.|.+|+.|..+.|......       .|                   +..+      
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~~-------~G-------------------~~~~------   51 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGKP-------EG-------------------VKIN------   51 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTCC-------TT-------------------EEET------
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCCC-------CC-------------------CEEE------
Confidence            89999999987       788999999999998888654321       11                   2222      


Q ss_pred             cceEEcCCCCChhhhhhc-----chhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          166 THVVKITPHIPLGIACLL-----SCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l-----~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      ...++.|+.....+.+..     ..+.. +.+ +....++.++++||.+|+| .|..+..+++. +. +|++++.+++.+
T Consensus        52 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~  126 (248)
T 2yvl_A           52 GFEVYRPTLEEIILLGFERKTQIIYPKD-SFY-IALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFY  126 (248)
T ss_dssp             TEEEECCCHHHHHHHTSCCSSCCCCHHH-HHH-HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHH
T ss_pred             EEEEeCCCHHHHHHhcCcCCCCcccchh-HHH-HHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHH
Confidence            333344432222222111     10222 222 4567788999999999998 68888899988 55 999999999998


Q ss_pred             HHHHH
Q 024496          241 EIGKK  245 (267)
Q Consensus       241 ~~~~~  245 (267)
                      +.+++
T Consensus       127 ~~a~~  131 (248)
T 2yvl_A          127 KTAQK  131 (248)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88865

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.38  E-value=2.6e-09  Score=98.48  Aligned_cols=136  Identities=17%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             cccceeeEEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccc
Q 024496           73 VIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFL  152 (267)
Q Consensus        73 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  152 (267)
                      ...|++.++.|.++|++++++.+|+.++.-+-..                        ++                ....
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~----------------~~~~  114 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AY----------------DRAA  114 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HH----------------HHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HH----------------HHHH
Confidence            4579999999999999999999999874321100                        00                0000


Q ss_pred             cccceeeeEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHh---CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCe
Q 024496          153 NISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVA---GVEVGSTVAIFGLGAVGLAVAEGARLNRASK  229 (267)
Q Consensus       153 ~~g~~a~y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~---~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~  229 (267)
                      ..|++++|+..+...++++|++++.+.++... +.+++|.++....   +-.+|++|+|+|+|.+|.++++.++..|+.+
T Consensus       115 ~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~~-~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~  193 (404)
T 1gpj_A          115 RLGTLDEALKIVFRRAINLGKRAREETRISEG-AVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRA  193 (404)
T ss_dssp             HHTCCCHHHHHHHHHHHHHHHHHHHHSSTTCS-CCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSE
T ss_pred             HcCCchHHHHHHHHHHhhhhccCcchhhhcCC-CccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCE
Confidence            01367888888888889999988777766543 6667777653222   2358999999999999999999999999989


Q ss_pred             EEEEcCChhhH-HHHHHcCCC
Q 024496          230 IIGVDINPEKF-EIGKKFGIT  249 (267)
Q Consensus       230 vi~~~~~~~~~-~~~~~~G~~  249 (267)
                      |++++++.++. ++++++|++
T Consensus       194 V~v~~r~~~ra~~la~~~g~~  214 (404)
T 1gpj_A          194 VLVANRTYERAVELARDLGGE  214 (404)
T ss_dssp             EEEECSSHHHHHHHHHHHTCE
T ss_pred             EEEEeCCHHHHHHHHHHcCCc
Confidence            99999999887 566777765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.25  E-value=0.0005  Score=63.01  Aligned_cols=49  Identities=27%  Similarity=0.290  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ++++|+|+|+|.+|++++++++.+|+ +|++++++.++++.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~  219 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFL  219 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEE
Confidence            58899999999999999999999999 89999999999999888987643

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.25  E-value=0.00061  Score=61.87  Aligned_cols=47  Identities=28%  Similarity=0.412  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|++++++.++++.++++|++
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~  229 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQ  229 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCE
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            67899999999999999999999999 899999999999999988875

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.22  E-value=0.00048  Score=62.62  Aligned_cols=49  Identities=22%  Similarity=0.307  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++++.++++|++.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~  219 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFI  219 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEE
Confidence            68999999999999999999999999 79999999999999999998754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.21  E-value=0.00019  Score=64.83  Aligned_cols=44  Identities=30%  Similarity=0.237  Sum_probs=40.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++++.+++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~  210 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLF  210 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhh
Confidence            4899999999999999999999999 9999999999988876654

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.18  E-value=0.0012  Score=62.01  Aligned_cols=61  Identities=21%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             hhHHHHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          188 STGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       188 ~ta~~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+.++++.+..+ ..+|++|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++++|++
T Consensus       258 ~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~  319 (494)
T 3ce6_A          258 HSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD  319 (494)
T ss_dssp             HHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             hhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE
Confidence            445554333222 7899999999999999999999999999 999999999998888888875

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0012  Score=60.36  Aligned_cols=47  Identities=23%  Similarity=0.339  Sum_probs=44.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|+++|+++++++.++++|++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~  235 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAK  235 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCc
Confidence            57899999999999999999999999 999999999999999999975

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.86  E-value=0.0022  Score=58.18  Aligned_cols=48  Identities=25%  Similarity=0.221  Sum_probs=42.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      -++++|+|+|+|.+|+++++.++.+|+ +|+++++++++++.+++ +|++
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~  214 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGR  214 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCe
Confidence            368999999999999999999999999 99999999999887765 5654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=96.81  E-value=0.0028  Score=54.44  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  155 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  155 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            45667889999999999877 888888888864 3499999999998888764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.81  E-value=0.0022  Score=51.54  Aligned_cols=53  Identities=19%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCCCEEE-CCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLN-RASKIIGVDINPEKFEIGKKFGITDFI-NPAT  256 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~G~~~vi-~~~~  256 (267)
                      +++|+|+|.|.+|...++.++.. |. +|+++++++++.+.+++.|...+. |..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~   93 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD   93 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC
Confidence            66899999999999999999988 98 899999999999999888987543 4433

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.77  E-value=0.0022  Score=49.43  Aligned_cols=50  Identities=12%  Similarity=0.276  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      -.++|+|+|.|.+|...++.++..|. +|+++++++++.+.+++.|...+.
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~   55 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVL   55 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEE
Confidence            34679999999999999999999999 999999999999999988886443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.75  E-value=0.0016  Score=55.45  Aligned_cols=46  Identities=17%  Similarity=0.148  Sum_probs=39.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLN-RASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++.+||.+|+|. |..+..+++.. +. +|+++|.+++.++.+++.+.
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~  130 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYP  130 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCC
Confidence            6789999999988 88888999876 56 99999999999999887653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.73  E-value=0.0036  Score=56.44  Aligned_cols=47  Identities=28%  Similarity=0.333  Sum_probs=42.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++++++++++.+++ +|.+
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~  212 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGR  212 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCce
Confidence            46899999999999999999999999 99999999998887765 6665

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.73  E-value=0.0017  Score=50.86  Aligned_cols=52  Identities=23%  Similarity=0.258  Sum_probs=43.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCCEE
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGITDF  251 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~~v  251 (267)
                      ...++++|+|+|+|.+|...++.++..|. +|+++++++++.+.++ +.|...+
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~   67 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTV   67 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEE
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEE
Confidence            45678899999999999999999999998 9999999999888877 6776543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.57  E-value=0.0042  Score=47.60  Aligned_cols=48  Identities=21%  Similarity=0.296  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .++|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.|...+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~   53 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAV   53 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEE
Confidence            4679999999999999999999999 99999999999999888786533

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=96.55  E-value=0.0092  Score=52.74  Aligned_cols=51  Identities=18%  Similarity=0.290  Sum_probs=41.1

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++++||-+|+|. |..+..+++..|. .+|++++.+++.++.+++
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~  148 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  148 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHH
Confidence            34556789999999999876 7777788887664 499999999988888764

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.53  E-value=0.0063  Score=44.54  Aligned_cols=48  Identities=13%  Similarity=0.286  Sum_probs=40.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+.+|+|+|+|.+|...++.+...|..+|+++++++++.+.+.+.+..
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~   51 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVA   51 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCE
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCc
Confidence            356899999999999999999999933899999999998888766654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.38  E-value=0.0017  Score=50.27  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=45.7

Q ss_pred             hhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCC
Q 024496          187 VSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGIT  249 (267)
Q Consensus       187 ~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~  249 (267)
                      +++++.++ +......+++|+|+|+|.+|.+.++.++..|+ +|+++++++++.+. .+++|.+
T Consensus         6 ~sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~   67 (144)
T 3oj0_A            6 VSIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYE   67 (144)
T ss_dssp             CSHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCE
T ss_pred             ccHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCc
Confidence            44555543 33333449999999999999999998888898 59999999988766 4456643

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.21  E-value=0.011  Score=51.40  Aligned_cols=49  Identities=27%  Similarity=0.325  Sum_probs=43.3

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      --.|++|+|+|.|.+|.++++.++.+|+ +|++.+++.++.+.++++|+.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  200 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGME  200 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSE
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            3478999999999999999999999999 999999998887777777765

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.08  E-value=0.025  Score=50.82  Aligned_cols=54  Identities=31%  Similarity=0.355  Sum_probs=45.2

Q ss_pred             HHhCC--CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          196 KVAGV--EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       196 ~~~~~--~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +..+.  -+|++|.|.|.|.+|+.+++.++.+|+ +|++.|++.++.+..+++|++.
T Consensus       166 ~~~G~~~L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~  221 (355)
T 1c1d_A          166 AHRGLGSLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTA  221 (355)
T ss_dssp             HHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE
T ss_pred             HhcCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEE
Confidence            34454  589999999999999999999999999 9999999887766667788753

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.06  E-value=0.024  Score=52.20  Aligned_cols=56  Identities=16%  Similarity=0.165  Sum_probs=45.5

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       208 ~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~  264 (435)
T 3gvp_A          208 DGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGF  264 (435)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCC
Confidence            34444444 5589999999999999999999999999 89999999877766665564

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.95  E-value=0.027  Score=52.66  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=45.7

Q ss_pred             HHHHhCC-CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          194 AWKVAGV-EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       194 ~~~~~~~-~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +.+..+. -.|++++|+|+|.+|.+.++.++..|+ +|+++++++.+...+...|+
T Consensus       255 i~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~  309 (488)
T 3ond_A          255 LMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGL  309 (488)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCC
Confidence            4444454 579999999999999999999999999 99999999988877776665

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.84  E-value=0.021  Score=49.77  Aligned_cols=49  Identities=22%  Similarity=0.291  Sum_probs=42.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      --.+++|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~  202 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV  202 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe
Confidence            3468999999999999999999999999 999999999887776667754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.80  E-value=0.0086  Score=45.38  Aligned_cols=47  Identities=23%  Similarity=0.374  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++++|+|+|+|.+|...++.+...|. +|+++++++++.+.+++.|..
T Consensus         5 ~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~   51 (144)
T 2hmt_A            5 KNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATH   51 (144)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSE
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCE
Confidence            35679999999999999999999998 899999998888777666654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.80  E-value=0.031  Score=46.33  Aligned_cols=47  Identities=17%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      -.+.+|||.|+ |.+|...+..+...|+ +|++++|++++.+.+.+.++
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~   66 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGA   66 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCC
Confidence            35789999998 9999999998888998 99999999999888776666

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=95.76  E-value=0.04  Score=46.17  Aligned_cols=51  Identities=16%  Similarity=0.238  Sum_probs=41.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  245 (267)
                      +....++.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~  136 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWE  136 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHH
Confidence            45667889999999999876 778888888753 4499999999988888764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.44  E-value=0.055  Score=46.98  Aligned_cols=44  Identities=23%  Similarity=0.189  Sum_probs=38.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .-.+++++|+|+|++|.+++..+...|+++|++++|+.++.+.+
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~l  167 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQAL  167 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH
Confidence            35688999999999999999888889998899999999887654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.41  E-value=0.058  Score=49.87  Aligned_cols=55  Identities=16%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             HHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          193 AAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       193 a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      ++.+..+ .-.|++|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       236 gI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~  291 (464)
T 3n58_A          236 GIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGF  291 (464)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTC
T ss_pred             HHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCc
Confidence            3444433 5689999999999999999999999999 99999988876655554554

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=95.39  E-value=0.071  Score=49.06  Aligned_cols=56  Identities=20%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++.+..+ .-.|++|.|+|.|.+|...++.++.+|+ +|+++++++.+...+...|+
T Consensus       199 dgi~ratg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~  255 (436)
T 3h9u_A          199 DGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGY  255 (436)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             HHHHHhcCCcccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCC
Confidence            33444333 3478999999999999999999999999 99999999877766555453

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.26  E-value=0.027  Score=49.35  Aligned_cols=49  Identities=18%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..++++++++||.+|+|+.+..++.+++..|+ +|++++.+++.++.+++
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~  164 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRK  164 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHH
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHH
Confidence            34678999999999999888888888888888 99999999999988865

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.23  E-value=0.084  Score=47.53  Aligned_cols=49  Identities=24%  Similarity=0.322  Sum_probs=42.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGIT  249 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~  249 (267)
                      --+|++|+|+|.|.+|..+++.+...|+ +|+++|++.++++.+ .++|++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            4578999999999999999999999999 899999999888754 456764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.06  E-value=0.029  Score=47.73  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=41.5

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++++||-+|+| .|..+..+++..+ ..+|++++.+++.++.+++
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARR  142 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4556778999999999987 7888888888753 3499999999998888765

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.89  E-value=0.069  Score=40.03  Aligned_cols=46  Identities=22%  Similarity=0.354  Sum_probs=38.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      +.+|+|+|+|.+|...++.+...|. +|+++++++++.+.+.+ +|..
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~   50 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL   50 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcE
Confidence            3579999999999999988888897 89999999988877764 5754

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=94.80  E-value=0.11  Score=44.45  Aligned_cols=43  Identities=12%  Similarity=0.020  Sum_probs=37.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -++++++|+|+|++|.+++..+...|+ +|++++|+.++.+.+.
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la  159 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA  159 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            367899999999999999999999996 9999999998875543

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=94.76  E-value=0.084  Score=45.50  Aligned_cols=44  Identities=14%  Similarity=0.201  Sum_probs=39.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +++++|+|+|+.|.+++..+...| .+|.++.|+.+|.+.+.++|
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt~~ka~~la~~~  161 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRSSRGLDFFQRLG  161 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHCC
Confidence            889999999999999999999899 59999999999887765665

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.69  E-value=0.093  Score=45.22  Aligned_cols=50  Identities=16%  Similarity=0.117  Sum_probs=40.8

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG  247 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  247 (267)
                      .+...+++++|+|+|+.+.+++..+...|+.+|.++.|+.+|.+.+ ++++
T Consensus       114 ~~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~  164 (271)
T 1npy_A          114 YHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG  164 (271)
T ss_dssp             TTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence            4455678999999999999999888889998999999998886655 3444

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=94.67  E-value=0.11  Score=45.83  Aligned_cols=43  Identities=21%  Similarity=0.229  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hhhHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN---PEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~---~~~~~~~  243 (267)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+   .++.+.+
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~l  197 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT  197 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHH
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHH
Confidence            368899999999999999999999999899999999   6666544

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=94.67  E-value=0.074  Score=44.11  Aligned_cols=42  Identities=14%  Similarity=0.264  Sum_probs=36.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++++||.|+ |.+|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   48 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLV   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999987 9999999998888999 8999999988776543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=94.67  E-value=0.074  Score=45.87  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+++++|+|+|++|.+++..+...|+.+|+++.|+.++.+.+.
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la  161 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALR  161 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence            6889999999999999998888899879999999998877653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.65  E-value=0.055  Score=49.52  Aligned_cols=49  Identities=29%  Similarity=0.449  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      .+.+|+|+|.|.+|...++.++..|. .|++++.++++.+.+++.|...+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi   51 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVF   51 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEE
Confidence            34679999999999999999999999 99999999999999999887644

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=94.56  E-value=0.07  Score=46.55  Aligned_cols=43  Identities=19%  Similarity=0.068  Sum_probs=37.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.+++++|+|+|++|.+++..+...|+.+|++++|+.++.+.+
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~l  181 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERL  181 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHH
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3678999999999999999999889988999999998886544

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.52  E-value=0.13  Score=45.33  Aligned_cols=43  Identities=21%  Similarity=0.192  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC---hhhHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN---PEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~---~~~~~~~  243 (267)
                      -.+++++|+|+|+.|.+++..+...|+++|+++.|+   .++.+.+
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~l  191 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAF  191 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHH
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHH
Confidence            368899999999999999998889999899999999   6665544

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=94.51  E-value=0.085  Score=44.24  Aligned_cols=46  Identities=28%  Similarity=0.372  Sum_probs=38.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++.
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   52 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGK   52 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            5789999987 8999999998888999 9999999988776653 4453

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=94.49  E-value=0.084  Score=44.56  Aligned_cols=43  Identities=16%  Similarity=0.147  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~   49 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIR   49 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            46789999987 8999998888888899 9999999998876654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=94.48  E-value=0.085  Score=44.33  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   52 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQV   52 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            46789999987 8999998888888899 999999998876654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=94.48  E-value=0.085  Score=43.95  Aligned_cols=41  Identities=10%  Similarity=0.122  Sum_probs=35.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ++++||.|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~   44 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQE   44 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            578999987 8999998888888899 9999999988876654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=94.46  E-value=0.084  Score=45.55  Aligned_cols=48  Identities=17%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~  249 (267)
                      -+|+.+||.|+ +++|.+.++.+...|+ +|+++++++++++.+ +++|..
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~   76 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGG   76 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTT
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCC
Confidence            46889999987 8999999999889999 999999999988765 456643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=94.46  E-value=0.073  Score=44.86  Aligned_cols=42  Identities=21%  Similarity=0.191  Sum_probs=35.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   48 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLV   48 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5788999987 8999999888888899 9999999988766543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.45  E-value=0.088  Score=44.03  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   49 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAV   49 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5789999987 8999998888888899 899999998877654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.44  E-value=0.088  Score=44.94  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+.+||.|+ +++|.+.++.+-..|+ +|+++++++++++.+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~   47 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQI   47 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            6889999987 8999998888888899 999999999887655

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=94.41  E-value=0.094  Score=43.32  Aligned_cols=40  Identities=15%  Similarity=0.076  Sum_probs=34.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKI   42 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            678999987 8999999988888999 899999998876654

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=94.39  E-value=0.13  Score=44.54  Aligned_cols=44  Identities=18%  Similarity=0.118  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.+++++|+|+|++|.+.+..+...|+.+|+++.|+.++.+.+.
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la  167 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLA  167 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHH
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHH
Confidence            36889999999999999988888899879999999998876653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=94.36  E-value=0.069  Score=44.56  Aligned_cols=45  Identities=27%  Similarity=0.149  Sum_probs=38.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ...++++|||.|+ |++|.+.+..+...|+ +|+++++++++++.+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   55 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLG   55 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH
Confidence            3567889999987 8999998888888899 9999999988877654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.35  E-value=0.11  Score=45.06  Aligned_cols=55  Identities=27%  Similarity=0.163  Sum_probs=45.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-c-----------CCCEEECCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-F-----------GITDFINPA  255 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~-----------G~~~vi~~~  255 (267)
                      ..+++++|+|+|+.|.+++..+...|+++|.++.|+.++.+.+.+ +           .+|-|||..
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l~~DivInaT  186 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNLKGDVIINCT  186 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTCCCSEEEECS
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhccCCEEEECC
Confidence            468899999999999999999999999899999999988766532 2           577777754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=94.34  E-value=0.13  Score=43.65  Aligned_cols=44  Identities=16%  Similarity=0.031  Sum_probs=37.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      ++|||.|+ +++|.+.++.+...|+ +|+++++++++.+.+.+.+.
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~   47 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERP   47 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCT
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcC
Confidence            68999987 8999999888888999 99999999988877765443

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=94.31  E-value=0.11  Score=41.77  Aligned_cols=84  Identities=15%  Similarity=0.283  Sum_probs=50.4

Q ss_pred             ceeeeEE-eeccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          156 SFTEYSV-VDITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       156 ~~a~y~~-v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      .|.+|.. .+....+.+++++++.....-.   ......... ..+.++++||-+|+|. |..+..+++ .+..+|+++|
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~~~---~~~~~~~l~-~~~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD   90 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNHQT---TQLAMLGIE-RAMVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATD   90 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCHHH---HHHHHHHHH-HHCSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCCcc---HHHHHHHHH-HhccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEE
Confidence            4666665 5666777787777665542211   111110111 1267889999999865 666666776 4666999999


Q ss_pred             CChhhHHHHHH
Q 024496          235 INPEKFEIGKK  245 (267)
Q Consensus       235 ~~~~~~~~~~~  245 (267)
                      .+++.++.+++
T Consensus        91 ~s~~~~~~a~~  101 (205)
T 3grz_A           91 ISDESMTAAEE  101 (205)
T ss_dssp             SCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            99988887764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=94.30  E-value=0.087  Score=44.31  Aligned_cols=42  Identities=14%  Similarity=0.221  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   48 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVH   48 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5788999987 8999998888888899 9999999988776653

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=94.30  E-value=0.098  Score=43.94  Aligned_cols=45  Identities=24%  Similarity=0.241  Sum_probs=37.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+. +++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   54 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIG   54 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhC
Confidence            5789999987 8999998888888899 8999999998877654 344

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=94.30  E-value=0.1  Score=43.54  Aligned_cols=41  Identities=20%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   51 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRA   51 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 9999998888888899 899999998776654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=94.29  E-value=0.08  Score=45.14  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=38.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|++++++.++.+.+. +++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            5788999987 8999998888888899 8999999998877654 4443

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=94.17  E-value=0.082  Score=43.98  Aligned_cols=43  Identities=14%  Similarity=0.158  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+.
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   55 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVS   55 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHH
Confidence            45789999987 8999998888888899 8999999988776553

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=94.16  E-value=0.097  Score=44.94  Aligned_cols=43  Identities=23%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+.
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~   57 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAA   57 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36789999987 9999998888888899 9999999998877664

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=94.14  E-value=0.11  Score=43.70  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   45 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAAT   45 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999999988888999 899999988776654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.13  E-value=0.089  Score=44.55  Aligned_cols=42  Identities=17%  Similarity=0.108  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|++++++++.++.+.
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~   49 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELE   49 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6889999996 5  899998888888999 9999999987766553

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.12  E-value=0.048  Score=44.18  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGH-QVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            38999999999999999999999 899998653

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.12  E-value=0.12  Score=42.83  Aligned_cols=42  Identities=14%  Similarity=0.177  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++++||.|+ |.+|...++.+...|+ +|+++++++++.+.+.
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   48 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLA   48 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5689999987 9999999988888899 8999999987766543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.11  E-value=0.084  Score=44.59  Aligned_cols=43  Identities=19%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -..++++||.|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAV   69 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            346789999987 8999998888888899 899999998877654

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=94.10  E-value=0.08  Score=44.66  Aligned_cols=42  Identities=24%  Similarity=0.219  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAK   47 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5788999987 8999999888888999 8999999988876654

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=94.10  E-value=0.083  Score=45.22  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++++.+
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   68 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKV   68 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4688999987 9999999988888899 899999998876654

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.09  E-value=0.11  Score=45.05  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++++++++++.+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   71 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQA   71 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            46789999987 8999998888888899 899999998877654

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.09  E-value=0.12  Score=43.27  Aligned_cols=45  Identities=22%  Similarity=0.266  Sum_probs=37.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+. ++|
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   50 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVG   50 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC
Confidence            4688999987 8999999988888899 9999999988776553 345

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=94.09  E-value=0.11  Score=43.67  Aligned_cols=46  Identities=26%  Similarity=0.279  Sum_probs=37.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      -.++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.+. +++
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   53 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG   53 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            35789999987 8999998888888899 8999999988776553 344

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.07  E-value=0.11  Score=43.87  Aligned_cols=41  Identities=17%  Similarity=0.139  Sum_probs=35.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   48 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAA   48 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999998888888899 899999998876654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.07  E-value=0.11  Score=44.10  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...++.+...|+ +|++++++.++.+.+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   72 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   72 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHH
Confidence            5689999987 9999999988888899 899999988766544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=94.05  E-value=0.12  Score=43.27  Aligned_cols=41  Identities=22%  Similarity=0.176  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++++.+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRAL   47 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4688999987 8999998888888899 999999998776654

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=94.04  E-value=0.12  Score=43.58  Aligned_cols=41  Identities=29%  Similarity=0.413  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEA   47 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            4688999987 8999999988888899 999999998776543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=94.04  E-value=0.11  Score=43.96  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .-.++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDV   51 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHH
Confidence            346789999987 8999998888888899 899999998876654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=93.99  E-value=0.086  Score=45.20  Aligned_cols=42  Identities=10%  Similarity=0.038  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|++++|+.++.+.+
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~   52 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEA   52 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45788999987 8999998888888899 999999998876554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=93.98  E-value=0.11  Score=45.56  Aligned_cols=41  Identities=20%  Similarity=0.278  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|||.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~   48 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKA   48 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5789999987 8999998888888899 899999999877654

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.97  E-value=0.12  Score=43.74  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=36.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   47 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAV   47 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5688999987 8999999888888899 9999999988776654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=93.96  E-value=0.12  Score=44.22  Aligned_cols=45  Identities=22%  Similarity=0.182  Sum_probs=37.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+. +++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   72 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIG   72 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC
Confidence            5789999987 8999998888888999 9999999988776653 344

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.95  E-value=0.13  Score=43.37  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDC   49 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 899999998776543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=93.95  E-value=0.12  Score=43.79  Aligned_cols=42  Identities=17%  Similarity=0.205  Sum_probs=35.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   61 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   61 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            45789999987 8999999888888899 899999998776543

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=93.94  E-value=0.13  Score=43.57  Aligned_cols=41  Identities=29%  Similarity=0.281  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   53 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   53 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 999999998776544

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=93.94  E-value=0.092  Score=44.73  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   44 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAI   44 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            4678999987 8999998888888899 899999998876654

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=93.93  E-value=0.11  Score=44.52  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=35.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   72 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVV   72 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999987 8999998888888899 899999988776554

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=93.93  E-value=0.095  Score=43.97  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=36.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+.
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~   50 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAIS   50 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999987 8999999988888999 9999999988776553

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.90  E-value=0.13  Score=43.95  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGA   51 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 899999998876554

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=93.90  E-value=0.13  Score=43.27  Aligned_cols=41  Identities=24%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAA   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 8999998888888899 899999998766544

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=93.88  E-value=0.13  Score=44.04  Aligned_cols=42  Identities=19%  Similarity=0.237  Sum_probs=36.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++.++++.+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   46 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELE   46 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHH
Confidence            4789999987 8999998888888899 9999999988776654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.86  E-value=0.14  Score=42.86  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   52 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATK   52 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            5788999987 9999998888888899 99999998876543

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=93.86  E-value=0.13  Score=43.89  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   61 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRT   61 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999987 8999999988888899 99999999876654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=93.83  E-value=0.14  Score=43.81  Aligned_cols=41  Identities=17%  Similarity=0.190  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   69 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADT   69 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4788999987 8999999988888899 899999998776543

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=93.83  E-value=0.14  Score=43.19  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+.
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   53 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVV   53 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5789999987 8999999888888899 9999999887766543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.80  E-value=0.13  Score=44.07  Aligned_cols=42  Identities=19%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   64 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAA   64 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999987 8999998888888899 899999998876654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=93.80  E-value=0.14  Score=43.57  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   61 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   61 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999999988888899 899999998776543

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=93.80  E-value=0.14  Score=43.24  Aligned_cols=41  Identities=20%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAM   47 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999998888888899 999999988776554

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=93.79  E-value=0.14  Score=43.19  Aligned_cols=41  Identities=29%  Similarity=0.359  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   47 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKA   47 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999999988888999 899999998776554

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=93.74  E-value=0.29  Score=42.07  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=35.9

Q ss_pred             CCCCEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++++|+| +|++|.+.+..+...|+ +|++++++.++.+.+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l  159 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA  159 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHH
Confidence            4688999999 59999999998888999 799999998776644

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.74  E-value=0.085  Score=45.06  Aligned_cols=41  Identities=29%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+.+||.|+ +++|.+.++.+...|+ +|+++++++++++..
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~   49 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAES   49 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            6889999987 8999999998888999 999999998876554

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=93.74  E-value=0.14  Score=42.80  Aligned_cols=42  Identities=14%  Similarity=0.138  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ |++|...+..+...|+ +|+++++++++.+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~   48 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETV   48 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHH
Confidence            5688999987 9999998888888898 9999999988766543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=93.73  E-value=0.092  Score=45.08  Aligned_cols=42  Identities=14%  Similarity=0.227  Sum_probs=34.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAA   73 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            36789999987 8999998888888899 999999998876654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=93.71  E-value=0.15  Score=43.44  Aligned_cols=41  Identities=15%  Similarity=0.155  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRAL   49 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999999988888999 899999988776554

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.70  E-value=0.1  Score=44.10  Aligned_cols=41  Identities=15%  Similarity=0.153  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDAC   50 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 999999998876654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=93.67  E-value=0.15  Score=43.82  Aligned_cols=43  Identities=14%  Similarity=0.101  Sum_probs=36.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+++++||.|+ +++|.+.+..+...|+ +|++++++.++.+.+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVA   69 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            35789999987 8999998888888899 9999999988776553

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.66  E-value=0.12  Score=41.91  Aligned_cols=39  Identities=26%  Similarity=0.395  Sum_probs=34.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|||+|+ |.+|...+..+...|. +|++++|++++.+.+.
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~   41 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRL   41 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHT
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccccccccc
Confidence            6999998 9999999999888898 9999999988877553

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=93.66  E-value=0.11  Score=44.14  Aligned_cols=41  Identities=15%  Similarity=0.228  Sum_probs=35.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++.++.+.+
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   60 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAA   60 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999999888888999 899999998876654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=93.62  E-value=0.094  Score=45.00  Aligned_cols=43  Identities=19%  Similarity=0.091  Sum_probs=36.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   49 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELT   49 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            35789999987 8999998888888899 8999999988776653

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=93.62  E-value=0.15  Score=43.18  Aligned_cols=41  Identities=27%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   71 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEET   71 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHH
Confidence            5789999987 9999999988888899 899999988776543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=93.57  E-value=0.12  Score=42.98  Aligned_cols=41  Identities=17%  Similarity=0.208  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~   45 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKF   45 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999998888888899 999999998776654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=93.56  E-value=0.13  Score=43.75  Aligned_cols=41  Identities=17%  Similarity=0.248  Sum_probs=35.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   51 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGA   51 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5789999987 8999998888888899 899999988776554

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=93.54  E-value=0.12  Score=43.66  Aligned_cols=41  Identities=20%  Similarity=0.218  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   52 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAV   52 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 899999998776654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.53  E-value=0.12  Score=43.37  Aligned_cols=41  Identities=15%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      -.++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   53 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDR   53 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            35789999987 9999999988888899 99999998876654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=93.51  E-value=0.12  Score=42.83  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAV   47 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999987 9999999888888898 999999988766544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=93.51  E-value=0.17  Score=42.74  Aligned_cols=40  Identities=33%  Similarity=0.265  Sum_probs=34.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   46 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQ   46 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            5688999987 9999999988888899 99999998876654

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=93.47  E-value=0.13  Score=43.32  Aligned_cols=41  Identities=12%  Similarity=0.127  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   45 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVV   45 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999999888888899 999999988776543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=93.43  E-value=0.17  Score=42.43  Aligned_cols=40  Identities=15%  Similarity=0.073  Sum_probs=33.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   42 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAV   42 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            468999987 8999999988888899 999999988766543

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=93.42  E-value=0.17  Score=43.45  Aligned_cols=41  Identities=12%  Similarity=0.157  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|||.|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   58 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   58 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4689999987 9999998888888899 899999988766543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.41  E-value=0.28  Score=42.34  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..++.+|||.|+ |.+|...+..+...|. +|++++++.++.+.+.
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHH
Confidence            346789999997 9999999888888898 9999999887765543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=93.41  E-value=0.13  Score=43.18  Aligned_cols=41  Identities=27%  Similarity=0.148  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQL   46 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999998888888899 899999998776654

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=93.41  E-value=0.18  Score=41.86  Aligned_cols=40  Identities=20%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++||.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   42 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEET   42 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            578999987 9999998888888898 899999988766543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=93.40  E-value=0.16  Score=43.36  Aligned_cols=42  Identities=12%  Similarity=0.027  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|++++++.++.+..
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   67 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTA   67 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35789999987 8999999888888899 999999998765443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=93.40  E-value=0.15  Score=42.78  Aligned_cols=41  Identities=27%  Similarity=0.192  Sum_probs=34.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   52 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQ   52 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHH
Confidence            5789999987 9999999988888899 899999887665543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=93.39  E-value=0.13  Score=42.73  Aligned_cols=41  Identities=24%  Similarity=0.166  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   46 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKA   46 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 9999999888888899 899999988766554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=93.36  E-value=0.12  Score=43.94  Aligned_cols=42  Identities=19%  Similarity=0.086  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   68 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGI   68 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            35788999987 8999998888888899 999999998776554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.34  E-value=0.2  Score=42.94  Aligned_cols=43  Identities=16%  Similarity=0.047  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.+++++|+|+|++|.+.+..+...|. +|+++.|+.++.+.+.
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G~-~v~v~~R~~~~a~~l~  159 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQQ-NIVLANRTFSKTKELA  159 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            367899999999999998888888895 9999999988876653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=93.34  E-value=0.18  Score=43.24  Aligned_cols=41  Identities=12%  Similarity=0.033  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++.++.+.+
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~   66 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   66 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 9999999888888899 899999998776543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.30  E-value=0.12  Score=42.98  Aligned_cols=40  Identities=23%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |.+|...+..+...|+ +|+++++++++.+.
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~   50 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANH   50 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            5688999987 9999999888888898 89999998876554

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.30  E-value=0.13  Score=43.84  Aligned_cols=41  Identities=22%  Similarity=0.156  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEET   46 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 8999998888888899 999999998776554

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=93.28  E-value=0.23  Score=45.73  Aligned_cols=53  Identities=21%  Similarity=0.084  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHHHcCCCEEECCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP----EKFEIGKKFGITDFINPA  255 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~----~~~~~~~~~G~~~vi~~~  255 (267)
                      .+++|+|+|.|..|++++.+++.+|+ +|.+.|..+    ...+.+++.|+.-.+..+
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~-~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~   64 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGA-IVTVNDGKPFDENPTAQSLLEEGIKVVCGSH   64 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTC-EEEEEESSCGGGCHHHHHHHHTTCEEEESCC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEeCCcccCChHHHHHHhCCCEEEECCC
Confidence            57899999999999999999999999 999999854    344567778876444443

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=93.27  E-value=0.14  Score=43.45  Aligned_cols=47  Identities=19%  Similarity=0.188  Sum_probs=38.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++++++++.+. ++|.
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~   73 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGK   73 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCC
Confidence            35789999987 8999999988888999 9999999988776653 4553

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=93.26  E-value=0.14  Score=43.55  Aligned_cols=41  Identities=22%  Similarity=0.145  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   46 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEET   46 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            4678999987 8999998888888899 999999998776554

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.23  E-value=0.25  Score=41.49  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   42 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG   42 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhH
Confidence            5788999987 8999998888888899 89999988766

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=93.23  E-value=0.13  Score=42.34  Aligned_cols=41  Identities=15%  Similarity=0.090  Sum_probs=34.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +++||.|+ |++|.+.+..+...|+ +|+++++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~   43 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTN   43 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            35899987 8999999988888999 89999999988877653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=93.21  E-value=0.14  Score=43.44  Aligned_cols=41  Identities=20%  Similarity=0.210  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++++++.+..
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   50 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNET   50 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999998888888899 999999998776543

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=93.20  E-value=0.16  Score=44.47  Aligned_cols=45  Identities=31%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.+++.++ +...++|+
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  185 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNG  185 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCc
Confidence            57899999999999999999999999 99999988776 44555665

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=93.20  E-value=0.13  Score=44.13  Aligned_cols=42  Identities=21%  Similarity=0.360  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+.
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   70 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAA   70 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            5788999987 8999998888888899 9999999988776653

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=93.18  E-value=0.12  Score=44.77  Aligned_cols=42  Identities=14%  Similarity=0.107  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   81 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSV   81 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            35789999987 8999999888888999 999999998776654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=93.15  E-value=0.12  Score=44.11  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=35.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .|+++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~   66 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQT   66 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5789999987 8999998888888899 999999998876654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=93.14  E-value=0.16  Score=41.85  Aligned_cols=40  Identities=15%  Similarity=0.104  Sum_probs=34.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++|||.|+ |.+|...+..+...|+ +|+++++++++.+.+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   45 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQAL   45 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            568999987 9999999888888899 899999988776654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=93.10  E-value=0.3  Score=40.77  Aligned_cols=45  Identities=27%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH-HHHcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP-EKFEI-GKKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~-~~~~G  247 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++ ++.+. +++.|
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~   53 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLG   53 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcC
Confidence            5788999987 8999998888888899 899999887 65543 34444

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.08  E-value=0.17  Score=40.91  Aligned_cols=38  Identities=21%  Similarity=0.316  Sum_probs=33.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|||+|+ |.+|...+..+...|. +|++++|++++.+.+
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~   40 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQT   40 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHH
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhc
Confidence            6999997 9999999999988998 999999998877654

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=93.07  E-value=0.14  Score=43.63  Aligned_cols=43  Identities=14%  Similarity=0.009  Sum_probs=35.1

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|++++++.++++.+.
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   69 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETA   69 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            45788999987 8999998888888899 8999999988766543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.07  E-value=0.18  Score=42.64  Aligned_cols=44  Identities=25%  Similarity=0.366  Sum_probs=38.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|||+|+|.+|...+..+...|. +|+++++++++.+.+...+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~   49 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGA   49 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTE
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCC
Confidence            589999999999999998888898 99999999988877765554

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.01  E-value=0.23  Score=44.94  Aligned_cols=50  Identities=18%  Similarity=0.153  Sum_probs=39.1

Q ss_pred             hhhhHHHHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          186 GVSTGVGAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       186 ~~~ta~~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++.-+.++ +..+ --++.+|+|+|+|..|..+++++..+|+++|+++|++
T Consensus       175 ~lAal~~A~-~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          175 VSAAFLNAL-KLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             HHHHHHHHH-HHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHHHHHH-HHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            333334433 3333 4467899999999999999999999999999999998

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.99  E-value=0.22  Score=41.92  Aligned_cols=41  Identities=22%  Similarity=0.135  Sum_probs=34.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...+..+...|+ +|++++++.++.+.+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   56 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKV   56 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHH
Confidence            5789999987 9999998888888899 999999887665443

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=92.99  E-value=0.16  Score=42.69  Aligned_cols=41  Identities=22%  Similarity=0.080  Sum_probs=34.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+++|||.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   54 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNEC   54 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5688999987 9999999988888899 999999988766543

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.99  E-value=0.15  Score=44.03  Aligned_cols=41  Identities=22%  Similarity=0.219  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   66 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEET   66 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            5788999987 8999999888888899 899999998776544

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=92.97  E-value=0.17  Score=42.30  Aligned_cols=41  Identities=10%  Similarity=0.032  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARL-NRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++++|||.|+ |.+|...+..+.. .|+ +|++++++.++.+.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~   45 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAA   45 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHH
Confidence            5688999987 9999998887777 899 999999987765543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=92.90  E-value=0.13  Score=43.21  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++.+..
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~   47 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEP   47 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC-----
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            5788999987 8999998888888899 899999887665543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=92.86  E-value=0.12  Score=44.18  Aligned_cols=41  Identities=27%  Similarity=0.311  Sum_probs=34.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++.+.+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~   73 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAV   73 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence            5789999987 8999998888888899 999999988765544

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=92.86  E-value=0.14  Score=43.46  Aligned_cols=42  Identities=21%  Similarity=0.213  Sum_probs=35.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|++++++.++.+.+.
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~   46 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLV   46 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            4678999987 9999999988888999 9999999987766653

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=92.86  E-value=0.13  Score=43.69  Aligned_cols=41  Identities=17%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      +-+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~   49 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVH   49 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHh
Confidence            457999999987 8999999999888999 9999998876543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=92.83  E-value=0.18  Score=42.10  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=33.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++++ ++++.+.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   44 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANE   44 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            4678999987 8999999888888899 8999888 7766544

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=92.80  E-value=0.17  Score=42.91  Aligned_cols=41  Identities=10%  Similarity=-0.025  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~  243 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++ ++++.+.+
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~   52 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRL   52 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            4678999987 8999998888888899 9999998 87766544

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=92.79  E-value=0.22  Score=42.46  Aligned_cols=43  Identities=21%  Similarity=0.280  Sum_probs=33.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++++...+...
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~   72 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVAD   72 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHH
Confidence            35789999987 8999998888888899 8999987654444433

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=92.79  E-value=0.19  Score=42.12  Aligned_cols=39  Identities=21%  Similarity=0.113  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ...++++||.|+ |++|.+.+..+...|+ +|++++++++.
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~   55 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEEL   55 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHH
Confidence            456889999987 8999999888888899 89999988743

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=92.72  E-value=0.17  Score=42.52  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh-HHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK-FEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~-~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++ .+.
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   44 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEK   44 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHH
Confidence            4678999987 8999999988888899 89999988776 444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=92.66  E-value=0.25  Score=38.03  Aligned_cols=41  Identities=2%  Similarity=-0.002  Sum_probs=33.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHHH
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN-PEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~~~  244 (267)
                      .++|+|+|+|.+|...++.+...|. +|++++++ +++.+.+.
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~   44 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLE   44 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHH
Confidence            4679999999999999999988898 89999986 45554443

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=92.64  E-value=0.29  Score=41.54  Aligned_cols=47  Identities=23%  Similarity=0.278  Sum_probs=38.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHHHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP--EKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~--~~~~~~~~~G~~  249 (267)
                      +|+.+||.|+ +++|.+.++.+-..|+ +|++++++.  +..+.+++.|.+
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~   57 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGN   57 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCc
Confidence            5888999987 8999999998888999 999998874  445666677754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.61  E-value=0.24  Score=42.48  Aligned_cols=41  Identities=24%  Similarity=0.464  Sum_probs=36.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++|.|+|+|.+|...++.+...|. +|++.++++++++.+++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            589999999999999998888899 99999999988776653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=92.61  E-value=0.19  Score=41.96  Aligned_cols=40  Identities=20%  Similarity=0.195  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .+++|||.|+ |.+|.+.+..+...|+ +|+++++ ++++.+.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANS   47 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHH
Confidence            4688999987 9999998888888899 8999998 7665543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=92.61  E-value=0.19  Score=42.93  Aligned_cols=41  Identities=15%  Similarity=0.027  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+.+||.|+ +++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~   47 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFL   47 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHH
Confidence            5789999987 8999998888888899 999998887655443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.61  E-value=0.27  Score=41.78  Aligned_cols=36  Identities=31%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      .--.++++||.|+ +++|.+.++.+...|+ +|+++++
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r   47 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDI   47 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEec
Confidence            3456889999987 8999998888888899 9999987

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.51  E-value=0.17  Score=42.10  Aligned_cols=40  Identities=28%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~  242 (267)
                      .++++||.|+ |.+|...+..+...|+ +|++++++ +++.+.
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   47 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDE   47 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHH
Confidence            4678999987 9999998888888899 89999887 555443

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=92.49  E-value=0.14  Score=42.25  Aligned_cols=44  Identities=20%  Similarity=0.250  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcC--CCeEEEEcCChhhHHHHHHc
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNR--ASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g--~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .++++||.|+ |.+|...+..+...|  + +|++++++.++.+.++++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~   48 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSI   48 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhc
Confidence            3578999987 999999888888889  6 999999988776665554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.48  E-value=0.19  Score=42.31  Aligned_cols=42  Identities=21%  Similarity=0.276  Sum_probs=35.3

Q ss_pred             CCCCEEEEEcC-C-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-G-AVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ | ++|.+.+..+...|+ +|++++++.++.+.+
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~   63 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGET   63 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHH
Confidence            35789999997 7 799998888888899 899999998876654

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=92.44  E-value=0.21  Score=42.35  Aligned_cols=40  Identities=18%  Similarity=0.217  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++.++++.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~   55 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKA   55 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4688999987 8999999888888899 89999988776544

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=92.40  E-value=0.23  Score=41.83  Aligned_cols=41  Identities=17%  Similarity=-0.013  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      +++++||.|+ |++|.+.+..+...|+ +|+++ ++++++.+.+
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~   45 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALET   45 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            5788999987 8999999988888999 77775 8888766554

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.34  E-value=0.31  Score=41.37  Aligned_cols=35  Identities=26%  Similarity=0.115  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            35789999987 8999998888888899 89999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=92.31  E-value=0.29  Score=39.74  Aligned_cols=49  Identities=16%  Similarity=0.153  Sum_probs=40.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++++||-+|+|. |..++.+++. +. +|+++|.+++.++.+++
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~   95 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQK   95 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHH
Confidence            34567789999999999876 7788888887 66 99999999998888754

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=92.31  E-value=0.17  Score=42.51  Aligned_cols=41  Identities=10%  Similarity=-0.013  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH---cCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARL---NRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~---~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+..   .|+ +|+++++++++.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~   49 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQL   49 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHH
Confidence            4678899987 8999998877776   799 999999998776654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=92.30  E-value=0.22  Score=42.55  Aligned_cols=41  Identities=10%  Similarity=0.127  Sum_probs=33.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |++|...+..+...|+ +|+++++++++.+.+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~   84 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSV   84 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH
Confidence            4678999987 9999998888888898 888898887766543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=92.30  E-value=0.43  Score=41.26  Aligned_cols=46  Identities=26%  Similarity=0.343  Sum_probs=41.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|...
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~   53 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACG   53 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCcc
Confidence            579999999999998888888898 9999999999999998888765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.30  E-value=0.17  Score=43.10  Aligned_cols=41  Identities=20%  Similarity=0.088  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+ +++|+|+|+.|.+++..+...|+++|++++|+.++.+.+
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l  148 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKAL  148 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            46 999999999999999988889998999999998876643

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=92.23  E-value=0.33  Score=41.48  Aligned_cols=42  Identities=24%  Similarity=0.301  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~  243 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++ ++++.+.+
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~   66 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTV   66 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHH
Confidence            35689999987 8999998888888999 9999988 55554443

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=92.17  E-value=0.26  Score=41.33  Aligned_cols=36  Identities=14%  Similarity=0.214  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++||.|+ |++|.+.+..+...|+ +|+++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   38 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQE   38 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcch
Confidence            578999987 8999998888887899 89999988776

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=92.15  E-value=0.28  Score=40.70  Aligned_cols=43  Identities=14%  Similarity=0.278  Sum_probs=33.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .++++||.|+ |++|.+.++.+.. |. +|+++++++++.+.+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~   47 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEI   47 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhh
Confidence            4688999987 8999987776644 77 899999999888776653

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=92.15  E-value=0.17  Score=42.11  Aligned_cols=40  Identities=28%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++++.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~   45 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQE   45 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHH
Confidence            4788999987 8999998888888899 99999998766543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.14  E-value=0.21  Score=42.29  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=32.0

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+|+|+|+|++|..++..+...|..++.++|++.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            47899999999999999999889998999999887

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=92.14  E-value=0.23  Score=42.63  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=34.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++ +++++.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~   50 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   50 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHH
Confidence            5788999987 8999999988888899 899999 988776554

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=92.13  E-value=0.27  Score=45.83  Aligned_cols=48  Identities=25%  Similarity=0.259  Sum_probs=40.5

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .-.|++|.|+|.|.+|...++.++.+|+ +|++++++..+.....+.|+
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~  301 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGF  301 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCC
Confidence            4578999999999999999999999999 99999999877544444454

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.13  E-value=0.34  Score=41.01  Aligned_cols=35  Identities=31%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   46 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLC   46 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecc
Confidence            46789999987 8999998888888899 89999876

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=92.11  E-value=0.29  Score=41.10  Aligned_cols=41  Identities=12%  Similarity=0.163  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GA--VGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~--vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .++++||.|+ |.  +|.+.+..+...|+ +|++++++++..+.+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   49 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSV   49 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHH
Confidence            5789999986 66  99998888888899 899998887554444

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.10  E-value=0.15  Score=44.01  Aligned_cols=56  Identities=13%  Similarity=0.108  Sum_probs=43.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH------------HHH--cCCCEEECCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI------------GKK--FGITDFINPAT  256 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~------------~~~--~G~~~vi~~~~  256 (267)
                      -.+++++|+|+|++|.+++..+...|+++|+++.|+.++.+.            +.+  -.+|-|||...
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp  184 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTP  184 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECcc
Confidence            467899999999999999999998999889999999877532            222  25777777543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=92.09  E-value=0.19  Score=42.99  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=33.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-hhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP-EKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~-~~~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++. ++.+.
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~   63 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVS   63 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            4688999987 8999998888888899 899998887 65543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=92.08  E-value=0.24  Score=41.53  Aligned_cols=40  Identities=15%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .+++|||.|+ |.+|...+..+...|+ +|+++++ ++++.+.
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~   61 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEE   61 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHH
Confidence            5788999987 9999998888888898 8998888 6665543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=92.04  E-value=0.25  Score=41.82  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++ +++..+.
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~   69 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADA   69 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            5789999987 8999998888888899 8988888 4444333

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=92.04  E-value=0.35  Score=41.17  Aligned_cols=35  Identities=29%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999987 8999998888888899 89999876

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=92.02  E-value=0.3  Score=42.81  Aligned_cols=47  Identities=26%  Similarity=0.315  Sum_probs=39.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      -.|++|.|+|.|.+|...++.++..|. +|++.+++.++. ..+++|+.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~  186 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAK  186 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCE
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCce
Confidence            467899999999999999999999999 999999887664 34556643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=92.02  E-value=0.36  Score=40.96  Aligned_cols=34  Identities=35%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            45789999987 8999998888888999 9999987

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=92.00  E-value=0.38  Score=39.79  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++||.|+ |++|.+.+..+...|+ +|+++++++++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~   38 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE   38 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH
Confidence            578999987 9999999988888899 89999988765

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=91.94  E-value=0.42  Score=38.31  Aligned_cols=51  Identities=14%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....++++++||-+|+|. |..+..+++.....+|+++|.+++.++.+++
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~   82 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRD   82 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH
Confidence            34566789999999999874 7788888887644599999999998888764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=91.92  E-value=0.25  Score=43.40  Aligned_cols=41  Identities=12%  Similarity=0.046  Sum_probs=35.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            5788999987 8999999998888999 899998 888776654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=91.87  E-value=0.32  Score=43.28  Aligned_cols=45  Identities=18%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|.|.+|.+.+..++..|. +|++.++++++.+.++++|+.
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~   53 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFD   53 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCe
Confidence            579999999999999988888898 999999999999999999975

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=91.87  E-value=0.32  Score=42.82  Aligned_cols=45  Identities=22%  Similarity=0.094  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLN-RASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~  244 (267)
                      .-.+++|||.|+ |.+|...+..+... |..+|+++++++++.+.+.
T Consensus        18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~   64 (344)
T 2gn4_A           18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMA   64 (344)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHH
T ss_pred             hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHH
Confidence            345789999997 99999988888777 8769999999887765543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=91.86  E-value=0.35  Score=40.66  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~  242 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++ ++++++.+.
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   48 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAAT   48 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            5789999987 8999998888888899 78877 666555443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=91.83  E-value=0.2  Score=44.77  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.++++...+...++|+.
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~  209 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAK  209 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCE
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCe
Confidence            458899999999999999999999999 899999887666666666653

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=91.79  E-value=0.2  Score=42.42  Aligned_cols=45  Identities=18%  Similarity=0.082  Sum_probs=34.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH-HHHHHcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF-EIGKKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~-~~~~~~G  247 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++++++. +.+.+.+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   72 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAG   72 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcC
Confidence            4678999987 8999998888888899 899998887653 3333444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.75  E-value=0.54  Score=40.44  Aligned_cols=41  Identities=27%  Similarity=0.231  Sum_probs=34.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.+++++|+|+|++|.+.+..+...|  +|++++++.++.+.+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~~~~~~~l  166 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRTVEKAEAL  166 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSSHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECCHHHHHHH
Confidence            35789999999999999888888888  899999998776554

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.72  E-value=0.31  Score=41.94  Aligned_cols=42  Identities=12%  Similarity=0.090  Sum_probs=33.8

Q ss_pred             CCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -.++++||.|+ |  ++|.+.++.+...|+ +|++++++++..+.+
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~   72 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRV   72 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            35789999987 5  999998888888899 899999887554443

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=91.69  E-value=0.41  Score=40.65  Aligned_cols=35  Identities=26%  Similarity=0.079  Sum_probs=30.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|++++++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            45789999987 8999999988888999 89999886

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.67  E-value=0.31  Score=43.07  Aligned_cols=46  Identities=26%  Similarity=0.441  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      -.+.+|.|+|.|.+|...++.++..|. +|++.+++.++ +...++|+
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  193 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNA  193 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCc
Confidence            356799999999999999999999998 99999998876 54445554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=91.66  E-value=0.34  Score=39.81  Aligned_cols=39  Identities=21%  Similarity=0.142  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLN--RASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~--g~~~vi~~~~~~~~~~  241 (267)
                      .+.+|||.|+ |.+|...++.+...  |. +|+++++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~   44 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKE   44 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHH
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchh
Confidence            4678999997 99999999888888  67 9999999876543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=91.66  E-value=0.42  Score=41.83  Aligned_cols=45  Identities=38%  Similarity=0.552  Sum_probs=40.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|.|.+|.+.+..++..|.. +|++.++++++.+.++++|.
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~   79 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI   79 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC
Confidence            6899999999999988888888864 89999999999999998886

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=91.61  E-value=0.34  Score=45.30  Aligned_cols=48  Identities=23%  Similarity=0.225  Sum_probs=40.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .-.|++|.|+|.|.+|..+++.++.+|+ +|++++++..+.......|+
T Consensus       274 ~L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~  321 (494)
T 3d64_A          274 MIAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGY  321 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTC
T ss_pred             ccCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCC
Confidence            3578999999999999999999999999 99999999876534444454

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=91.58  E-value=0.16  Score=42.60  Aligned_cols=43  Identities=14%  Similarity=0.046  Sum_probs=33.6

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcC---CCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNR---ASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g---~~~vi~~~~~~~~~~~~  243 (267)
                      ..+++++||.|+ |.+|.+.+..+...|   + +|++++++.++.+.+
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~   64 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKEL   64 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHH
Confidence            345678999987 999999888888888   6 999999887654433

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.57  E-value=0.29  Score=40.47  Aligned_cols=39  Identities=21%  Similarity=0.160  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~  241 (267)
                      .++++||.|+ |.+|...++.+...|+ +|+++ .+++++.+
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~   44 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLD   44 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHH
Confidence            4678999987 9999999888888899 88888 66655443

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=91.56  E-value=0.43  Score=40.70  Aligned_cols=42  Identities=17%  Similarity=0.163  Sum_probs=33.6

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~  243 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|+++++ ++++.+.+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~   70 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPV   70 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHH
Confidence            46789999987 8999999888888999 8888874 66655443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=91.54  E-value=0.47  Score=40.33  Aligned_cols=46  Identities=37%  Similarity=0.536  Sum_probs=39.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|.|.+|.+.+..+...|.. +|++.++++++.+.+++.|..
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~   48 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII   48 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCc
Confidence            3789999999999998888887753 799999999999988888864

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.53  E-value=0.43  Score=41.11  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            35789999987 8999998888888899 99998876

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=91.53  E-value=0.31  Score=43.27  Aligned_cols=46  Identities=35%  Similarity=0.487  Sum_probs=38.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.+++.++ +.+.++|+
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  208 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGV  208 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTC
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            357899999999999999999999998 99999987665 34455565

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=91.51  E-value=0.42  Score=40.50  Aligned_cols=44  Identities=23%  Similarity=0.370  Sum_probs=38.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+.+.|..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~   45 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLV   45 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCC
Confidence            68999999999998888888888 899999999999888888763

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=91.47  E-value=0.28  Score=40.38  Aligned_cols=40  Identities=23%  Similarity=0.054  Sum_probs=32.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      ++++||.|+ |.+|...++.+...|+ +|+++ ++++++.+.+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~   42 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEV   42 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            357899987 9999999888888898 88887 8887766543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=91.33  E-value=0.33  Score=41.22  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=32.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++ +.++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~   68 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADE   68 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHH
Confidence            5788999987 8999998888888899 8888776 5555443

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.31  E-value=0.41  Score=41.06  Aligned_cols=36  Identities=28%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|++++++.+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   82 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEE   82 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            5789999987 8999998888888899 8988888765

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=91.31  E-value=0.3  Score=43.49  Aligned_cols=48  Identities=27%  Similarity=0.357  Sum_probs=40.1

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGAR-LNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~-~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      -.|.+|.|+|.|.+|...++.++ ..|. +|++.+++.++.+...++|+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~  209 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAE  209 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcE
Confidence            46789999999999999999999 8998 999999887766655555643

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=91.31  E-value=0.42  Score=40.86  Aligned_cols=43  Identities=19%  Similarity=0.077  Sum_probs=37.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.+.+|+|+|+|.+|.+.+..+...|+ +|++.+++.++.+.+.
T Consensus       127 ~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~  169 (275)
T 2hk9_A          127 VKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRTKEKAIKLA  169 (275)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHT
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            357899999999999999988888899 9999999988876553

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=91.29  E-value=0.2  Score=41.70  Aligned_cols=41  Identities=7%  Similarity=-0.058  Sum_probs=33.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-c--CChhhHHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-D--INPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~--~~~~~~~~~~  244 (267)
                      ++++||.|+ |++|.+.++.+...|+ +|+++ +  +++++.+.+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~   45 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFE   45 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHH
Confidence            467899987 8999999988888899 89999 6  8887776553

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=91.27  E-value=0.45  Score=40.46  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++.++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~   65 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTE   65 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchH
Confidence            4688999987 8999999988888899 89988887643

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=91.24  E-value=0.22  Score=44.09  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=28.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -+|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~-~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGI-KVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            379999999999999998888999 888887543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=91.23  E-value=0.4  Score=41.07  Aligned_cols=44  Identities=25%  Similarity=0.300  Sum_probs=37.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+++.|.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~   47 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGL   47 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCE
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCE
Confidence            379999999999998887777888 99999999999888877664

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=91.23  E-value=0.35  Score=39.85  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=31.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFEI  242 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~~  242 (267)
                      |+++||.|+ |.+|...++.+...|+ +|++ .++++++.+.
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~   41 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEE   41 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHH
Confidence            468899987 9999999988888999 7877 5788766544

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=91.20  E-value=0.28  Score=40.93  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .++++||.|+ |.+|.+.+..+...|+ +|++++++.++
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~   50 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAAD   50 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchh
Confidence            4678999987 9999998888888898 89999885543

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.18  E-value=0.41  Score=38.85  Aligned_cols=39  Identities=10%  Similarity=0.127  Sum_probs=33.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH-HcCCCeEEEEcCChh-hHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGAR-LNRASKIIGVDINPE-KFEIG  243 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~-~~g~~~vi~~~~~~~-~~~~~  243 (267)
                      ++|||+|+ |.+|...++.+. ..|+ +|++++++++ +.+.+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~   47 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPE   47 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhh
Confidence            46999997 999999888777 7899 9999999988 66555

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=91.17  E-value=0.39  Score=41.30  Aligned_cols=42  Identities=17%  Similarity=0.132  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          200 VEVGSTVAIFGL-GA--VGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~--vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .-.++++||.|+ |.  +|.+.+..+...|+ +|++++++++..+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~   72 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKR   72 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHH
Confidence            456889999987 56  99998888888899 89999988654433

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=91.16  E-value=0.34  Score=40.85  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~   45 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQA   45 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCG
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCc
Confidence            5789999987 8999998888888899 888876543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=91.15  E-value=0.21  Score=44.83  Aligned_cols=48  Identities=23%  Similarity=0.275  Sum_probs=39.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      -.|.+|.|+|.|.+|...++.++.+|.++|++.+++..+.+...++|+
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~  209 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGA  209 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCc
Confidence            368899999999999999999999999339999987766665555554

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=91.13  E-value=0.47  Score=43.03  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      -+..+|+|+|+|..|..++.++..+|+++|+++|++
T Consensus       186 l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~  221 (398)
T 2a9f_A          186 LDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKF  221 (398)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            355799999999999999999999999999999876

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=91.12  E-value=0.39  Score=41.77  Aligned_cols=43  Identities=26%  Similarity=0.193  Sum_probs=36.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|+|+|+|.+|.+.+..+. .|. +|.++++++++.+.+++.|.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~-~V~~~~r~~~~~~~l~~~G~   45 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYH-DVTVVTRRQEQAAAIQSEGI   45 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHCE
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCC-ceEEEECCHHHHHHHHhCCc
Confidence            47999999999988777777 787 99999999988888877674

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=91.05  E-value=0.28  Score=41.08  Aligned_cols=40  Identities=18%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++||.|+ |++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~   41 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELK   41 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence            36888887 8999998888888899 9999999988766543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=91.03  E-value=0.35  Score=37.57  Aligned_cols=51  Identities=20%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.......++++||-+|+|. |..+..+++..+..+|+++|.+++.++.+++
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~   67 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILS   67 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHH
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            34556788999999999875 8888888887644499999999988888764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.03  E-value=0.42  Score=39.06  Aligned_cols=44  Identities=18%  Similarity=0.121  Sum_probs=37.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~  249 (267)
                      +|+|+|+|.+|...++.+...|. .|+++++++++.+.+. ++|..
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~   46 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKAT   46 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCe
Confidence            58899999999999999988898 9999999999988765 45654

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=91.01  E-value=0.51  Score=39.30  Aligned_cols=36  Identities=14%  Similarity=0.198  Sum_probs=30.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+++++|.|+ |++|.+.+..+...|+++|+++++++
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~   40 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCc
Confidence            4688999987 89999988888888995488888875

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=90.97  E-value=0.28  Score=43.26  Aligned_cols=46  Identities=26%  Similarity=0.261  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++.+...++|.
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  199 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQA  199 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCc
Confidence            47799999999999999999999999 89999987766555555554

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=90.94  E-value=0.3  Score=44.35  Aligned_cols=47  Identities=19%  Similarity=0.165  Sum_probs=39.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++..+.+..+++|+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~  236 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLT  236 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCce
Confidence            67899999999999999999999998 999999886655555555643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=90.92  E-value=0.41  Score=39.48  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=33.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRAS------KIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~------~vi~~~~~~~~~~~~  243 (267)
                      +++|||.|+ |++|...+..+...|+.      +|+++++++++.+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~   49 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKI   49 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHH
Confidence            567999987 99999988877777875      789999988776554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=90.91  E-value=0.27  Score=41.84  Aligned_cols=40  Identities=20%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++||.|+ |++|.+.+..+...|+ +|+++++++++++.+.
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~   62 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALA   62 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            68999987 8999998888888899 9999999988776543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=90.91  E-value=0.38  Score=42.31  Aligned_cols=45  Identities=22%  Similarity=0.265  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI-NPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~~~~~G~  248 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.++ +.++. ..+++|+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~~-~~~~~g~  190 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSS-DEASYQA  190 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHH-HHHHHTC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcChh-hhhhcCc
Confidence            57899999999999999999999998 9999998 76553 4444554

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=90.89  E-value=0.27  Score=40.77  Aligned_cols=37  Identities=19%  Similarity=0.303  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..++++||.|+ |++|.+.+..+...|+ +|++++++++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   42 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVEN   42 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChh
Confidence            45788999987 8999999988888898 8999887753

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=90.88  E-value=0.29  Score=40.95  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++++||.|+ |++|.+.+..+...|+ +|++++++++
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~   57 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFREN   57 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcc
Confidence            678999987 8999999988888899 8999988764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=90.83  E-value=0.2  Score=41.50  Aligned_cols=46  Identities=13%  Similarity=0.106  Sum_probs=35.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ....+|+|+|.|.+|...++.+...|.  |+++++++++.+.+. .|..
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~   52 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGAN   52 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCE
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCe
Confidence            456789999999999988888877776  889999998888776 6644

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=90.83  E-value=0.32  Score=40.74  Aligned_cols=36  Identities=22%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~   39 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP   39 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            4678999987 9999999888888899 8999988765

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=90.81  E-value=0.25  Score=41.97  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=32.4

Q ss_pred             hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          198 AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       198 ~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .....+++|||.|+ +++|.+.+..+...|+ +|++++++++
T Consensus         9 ~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   49 (269)
T 3vtz_A            9 MEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEK   49 (269)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC-
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            34567899999987 8999998888888899 8988887654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=90.78  E-value=0.41  Score=42.78  Aligned_cols=46  Identities=26%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++. +.+...+.|+.
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~  204 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFA  204 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCce
Confidence            47899999999999999999999999 999999875 33445556653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=90.75  E-value=0.22  Score=41.14  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|++++++++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~   38 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   38 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcc
Confidence            3568999987 8999999988888899 8999887653

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=90.73  E-value=0.23  Score=42.09  Aligned_cols=40  Identities=25%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++++||.|+ |.+|...+..+...|+ +|++++++.++.+.
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~   73 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEK   73 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            4688999987 8999998888777899 89999888765543

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=90.69  E-value=0.25  Score=43.72  Aligned_cols=46  Identities=24%  Similarity=0.373  Sum_probs=38.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++..+.+...++|+
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~  189 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGL  189 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCc
Confidence            57899999999999999999999999 99999988755555544453

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.68  E-value=0.36  Score=43.19  Aligned_cols=38  Identities=26%  Similarity=0.455  Sum_probs=33.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..++++|+|+|+|.+|.+.++.++.+|+ +|++++.+++
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa~~lG~-~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSAQKMGY-KVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            5678999999999999999999999999 8999887543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=90.67  E-value=0.55  Score=40.15  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=39.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   46 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAE   46 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCE
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCe
Confidence            479999999999998888888898 999999999999888776653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=90.63  E-value=0.48  Score=40.49  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~   44 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAE   44 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            5789999987 8999998888888899 9999988865

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=90.63  E-value=0.34  Score=42.82  Aligned_cols=46  Identities=24%  Similarity=0.295  Sum_probs=37.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      -.|.+|.|+|.|.+|...++.++..|. +|++.+++.++ +...++|+
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~  189 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELKA  189 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHTE
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCc
Confidence            357899999999999999999999998 99999988776 44444453

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=90.62  E-value=0.5  Score=41.86  Aligned_cols=38  Identities=29%  Similarity=0.284  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|++++++.++
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~   81 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQP   81 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSC
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhh
Confidence            35789999987 8999998888888899 89999888753

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=90.60  E-value=0.37  Score=43.92  Aligned_cols=39  Identities=18%  Similarity=0.250  Sum_probs=34.6

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+.++++|+|+|+|.+|...++.++.+|+ +|++++.+++
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~-~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGY-RVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence            36789999999999999999999999999 8888886643

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=90.58  E-value=0.48  Score=39.07  Aligned_cols=50  Identities=20%  Similarity=0.351  Sum_probs=41.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++++||-+|+| .|..+..+++..+ .+|++++.+++.++.+++
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~  132 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVK-TDVYTIERIPELVEFAKR  132 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHC-SCEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHH
Confidence            4455678999999999988 6888888998877 599999999988877764

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=90.55  E-value=0.48  Score=37.55  Aligned_cols=36  Identities=22%  Similarity=0.346  Sum_probs=31.2

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .+|+|+|+ |.+|...++.+...|. +|+++++++++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~   40 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRL   40 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhc
Confidence            68999998 9999999998888897 999998887653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=90.50  E-value=0.7  Score=37.21  Aligned_cols=51  Identities=20%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +.......++++||.+|+| .|..+..+++..+. .+|++++.+++.++.+++
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~  120 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAER  120 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Confidence            4456678899999999987 48888888887762 399999999988887764

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=90.49  E-value=0.57  Score=40.88  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   76 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGAT   76 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCE
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCE
Confidence            4689999999999998888888898 999999999999988877754

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=90.47  E-value=0.22  Score=41.80  Aligned_cols=39  Identities=13%  Similarity=-0.050  Sum_probs=32.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++||.|+ |++|.+.++.+...|+ +|+++++++++.+.+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   41 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDEL   41 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHH
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            46889987 8999999988888899 899999887766544

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=90.45  E-value=0.33  Score=42.90  Aligned_cols=34  Identities=26%  Similarity=0.347  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++|+|+|+|..|..++..|+.+|+ ++++++.+++
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~-~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGM-KVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCC
Confidence            589999999999999999999999 8888887654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=90.45  E-value=0.64  Score=39.44  Aligned_cols=41  Identities=22%  Similarity=0.251  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++++ +.++.+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~   71 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQA   71 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            36789999987 8999998888888899 7887744 4444443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.35  E-value=0.45  Score=40.85  Aligned_cols=43  Identities=30%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC--CeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRA--SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~--~~vi~~~~~~~~~~~~~  244 (267)
                      .++++||.|+ +++|.+.+..+...|+  .+|++++++.++++.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~   77 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELK   77 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHH
Confidence            5789999987 8999987766655555  38999999988876654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=90.24  E-value=0.42  Score=41.63  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=31.0

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .-.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~   60 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIG   60 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            346789999987 8999998888888899 99999876

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=90.16  E-value=0.59  Score=40.56  Aligned_cols=46  Identities=22%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      -.+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~   66 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGAS   66 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCE
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe
Confidence            3589999999999998888888898 999999999999988887753

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=90.14  E-value=0.51  Score=39.82  Aligned_cols=42  Identities=19%  Similarity=0.042  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      ..++++||.|+ |++|.+.+..+...|+ +|+++ .++.++.+.+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~   67 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAV   67 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHH
Confidence            45788999987 8999999988888999 77665 7777665544

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=90.07  E-value=0.64  Score=40.09  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=32.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++|.|+|+|.+|...+..+...|. +|+++++++++++.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            579999999999976666666788 999999999887754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=90.06  E-value=0.57  Score=39.64  Aligned_cols=42  Identities=14%  Similarity=0.085  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|+++ .+++++.+.+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~   68 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEV   68 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            35789999987 8999998888887899 77776 5555555443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.05  E-value=0.7  Score=40.50  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             CCEEEEEcCCHHHHH-HHHHHHHcCCCeEEEEcCCh--hhHHHHHHcCCCEEE
Q 024496          203 GSTVAIFGLGAVGLA-VAEGARLNRASKIIGVDINP--EKFEIGKKFGITDFI  252 (267)
Q Consensus       203 g~~VlI~G~g~vG~~-a~~la~~~g~~~vi~~~~~~--~~~~~~~~~G~~~vi  252 (267)
                      .++|.|+|.|.+|++ ++.+++.+|+ +|.+.|..+  ...+.+++.|+.-..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~~~~~~~~~L~~~gi~v~~   55 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAKMYPPMSTQLEALGIDVYE   55 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHTTCEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCCCCcHHHHHHHhCCCEEEC
Confidence            468999999999996 7889999999 999999864  345667778876443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.05  E-value=0.5  Score=39.98  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFG  247 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G  247 (267)
                      .+ +++|+|+|.+|.+.+..+...|+ +|.+.+++.++.+.+ +++|
T Consensus       116 ~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~  160 (263)
T 2d5c_A          116 KG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFG  160 (263)
T ss_dssp             CS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHT
T ss_pred             CC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc
Confidence            56 99999999999999998888998 899999998876554 3444

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=90.03  E-value=0.37  Score=40.73  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~   42 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHD   42 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCc
Confidence            4688999987 8999999988888899 888887754

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=89.94  E-value=0.35  Score=39.27  Aligned_cols=34  Identities=21%  Similarity=0.251  Sum_probs=30.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      +|||+|+ |.+|...+..+...|. +|++++|++++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~   36 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQ   36 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGG
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            6999997 9999999998888898 99999998765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=89.92  E-value=0.75  Score=36.86  Aligned_cols=49  Identities=18%  Similarity=0.092  Sum_probs=40.0

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +......+++++||-+|+| .|..+..+++. +. +|++++.+++.++.+++
T Consensus        69 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~  117 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTG-SGYQTAILAHL-VQ-HVCSVERIKGLQWQARR  117 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEEcCC-CCHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            3456778999999999987 47777788887 55 99999999998887764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=89.92  E-value=0.54  Score=40.91  Aligned_cols=37  Identities=22%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .--.++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus        42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           42 NRLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            3456789999987 8999998888888899 89988765

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=89.75  E-value=0.41  Score=40.65  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   41 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAV   41 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccch
Confidence            5789999987 8999998888888899 8999988764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.75  E-value=0.69  Score=39.68  Aligned_cols=34  Identities=15%  Similarity=0.041  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++++++
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~   82 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLP   82 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCG
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5789999987 8999998888888899 89988876

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=89.74  E-value=0.32  Score=41.49  Aligned_cols=35  Identities=14%  Similarity=-0.016  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~   45 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARAR   45 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCc
Confidence            6889999987 8999999988888999 999998764

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=89.71  E-value=0.32  Score=45.76  Aligned_cols=42  Identities=29%  Similarity=0.309  Sum_probs=33.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.+.
T Consensus       363 ~~k~vlV~GaGGig~aia~~L~~~G~-~V~i~~R~~~~a~~la  404 (523)
T 2o7s_A          363 ASKTVVVIGAGGAGKALAYGAKEKGA-KVVIANRTYERALELA  404 (523)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHHCC--CEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            46789999999999999998888999 8999999988876654

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=89.66  E-value=0.38  Score=39.05  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=31.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .+|||+|+ |.+|...++.+...|. +|+++++++++.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   41 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKI   41 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccc
Confidence            58999997 9999999999998898 999999987653

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=89.62  E-value=0.58  Score=38.89  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=30.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~~  242 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++ +.++.+.
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~   44 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEA   44 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHH
Confidence            4678999987 8999999888888899 7877665 4454443

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=89.60  E-value=0.43  Score=40.13  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|++++++++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence            4688999987 8999999888888899 8888877643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=89.58  E-value=0.32  Score=42.62  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~-~V~v~Er~~   37 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGL-KTLMIEKRP   37 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38999999999999888888999 899998754

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=89.46  E-value=0.48  Score=39.48  Aligned_cols=35  Identities=29%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|+++++++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~   41 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAF   41 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCch
Confidence            4688999987 8999999988888899 888887764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=89.40  E-value=0.58  Score=39.15  Aligned_cols=44  Identities=14%  Similarity=0.175  Sum_probs=34.4

Q ss_pred             CCCCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          199 GVEVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       199 ~~~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ...++++|||.|+   +++|.+.+..+...|+ +|++++++.+..+.+
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~   56 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRI   56 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHH
Confidence            3567889999974   6999998888888899 999998876444433

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=89.40  E-value=0.7  Score=40.67  Aligned_cols=41  Identities=24%  Similarity=0.212  Sum_probs=34.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .-.+|.|+|+|.+|...++.+-..|+ +|+..|.+++.++..
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~   45 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGA   45 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHH
Confidence            34689999999999998888888999 999999998765543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=89.38  E-value=0.51  Score=42.23  Aligned_cols=37  Identities=30%  Similarity=0.325  Sum_probs=33.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.++++|+|+|+|.+|...++.++.+|+ +|++++.++
T Consensus        11 ~~~~k~IlIlG~G~~g~~la~aa~~~G~-~vi~~d~~~   47 (389)
T 3q2o_A           11 ILPGKTIGIIGGGQLGRMMALAAKEMGY-KIAVLDPTK   47 (389)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            5688999999999999999999999999 898888654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=89.34  E-value=0.65  Score=40.02  Aligned_cols=50  Identities=14%  Similarity=0.231  Sum_probs=41.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +....++.++++||-+|+|. |..+..+++..|+ +|++++.+++.++.+++
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  131 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQ  131 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            44556788999999999876 7777888887788 99999999998888765

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=89.28  E-value=0.86  Score=38.97  Aligned_cols=34  Identities=21%  Similarity=0.166  Sum_probs=29.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+|||+|+ |.+|...+..+...|. +|+++++++.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   37 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIG   37 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCC
Confidence            68999997 9999999999988898 9999988743

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=89.23  E-value=1.9  Score=37.53  Aligned_cols=70  Identities=17%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             cchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEECC
Q 024496          183 LSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFINP  254 (267)
Q Consensus       183 l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi~~  254 (267)
                      ++|....+.. +++..+ --.|++++|+|.| .+|..++.++..+|+ +|.++.+....+++... .-+|-+|+.
T Consensus       145 ~PcTp~gv~~-lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~~l~l~~~~~~ADIVI~A  217 (300)
T 4a26_A          145 TPCTAKGVIV-LLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTSTEDMIDYLRTADIVIAA  217 (300)
T ss_dssp             CCHHHHHHHH-HHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSCHHHHHHHHHTCSEEEEC
T ss_pred             CCCCHHHHHH-HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCCCchhhhhhccCCEEEEC
Confidence            4544444444 344444 4589999999985 589999999999999 88888764444441011 245666554

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=89.23  E-value=0.9  Score=38.75  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=39.1

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|+ |.+|...+..+...|. +|+++++++++.+.+.+.|.+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~   57 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGMGIP   57 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHTTCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhcCCC
Confidence            47999999 9999998888888888 999999999998888777743

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=89.20  E-value=0.48  Score=40.93  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .+.+|||.|+ |.+|...+..+...|. +|+++++++++
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~   39 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGE   39 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCST
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcc
Confidence            3578999997 9999999888888898 99999887654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=89.19  E-value=0.34  Score=40.44  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   50 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSG   50 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChH
Confidence            5688999987 8999999888888898 8998887653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=89.18  E-value=0.43  Score=41.19  Aligned_cols=40  Identities=13%  Similarity=0.108  Sum_probs=30.0

Q ss_pred             hCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          198 AGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       198 ~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..-.++.+|||.|+ |.+|...+..+...|. +|++++++.+
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   49 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRS   49 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCc
Confidence            34567889999987 9999999988888898 9999987654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=89.16  E-value=0.74  Score=39.36  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   49 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGA   49 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCC
Confidence            379999999999998888887888 89999999999888877664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=89.07  E-value=1.5  Score=37.94  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=46.6

Q ss_pred             hcchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          182 LLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .++|....... +++..+ --.|++++|+|.| .+|..++.++..+|+ +|.++.+....++... .-+|-+|+.
T Consensus       140 ~~PcTp~gv~~-lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~~~~-~~ADIVI~A  211 (285)
T 3l07_A          140 LESCTPKGIMT-MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRFTTDLKSHT-TKADILIVA  211 (285)
T ss_dssp             CCCHHHHHHHH-HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHHHHH-TTCSEEEEC
T ss_pred             CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCchhHHHhc-ccCCEEEEC
Confidence            34544444444 344444 3589999999985 589999999999999 8888865544443322 246666654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=89.06  E-value=0.89  Score=38.87  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=41.8

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +....+++++++||-+|+|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~  113 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKA  113 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            45667789999999999875 7788888888786 99999999988877764

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=89.00  E-value=0.96  Score=37.81  Aligned_cols=44  Identities=30%  Similarity=0.295  Sum_probs=36.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHH-cCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      +|.|+|+|.+|.+.+..+...| . +|.+.++++++.+.+.+ +|..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~-~v~~~~r~~~~~~~~~~~~g~~   47 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE   47 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC-eEEEECCCHHHHHHHHHhcCCE
Confidence            6899999999998887777678 6 89999999998888765 5865

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=88.98  E-value=0.67  Score=38.75  Aligned_cols=42  Identities=14%  Similarity=0.222  Sum_probs=32.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  244 (267)
                      ++++||.|+ +++|.+.+..+...|+ .+|+.+++++++++.+.
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~   45 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLK   45 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHH
Confidence            578999987 8999987766655542 28888999988776654

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=88.95  E-value=0.66  Score=38.44  Aligned_cols=41  Identities=20%  Similarity=0.127  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~  242 (267)
                      -.++++||.|+ +++|.+.+..+...|+ +|+++ .++.++.+.
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~   47 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEE   47 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHH
Confidence            35789999987 8999998888888899 77774 666555443

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=88.89  E-value=0.47  Score=41.13  Aligned_cols=37  Identities=16%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .+++|||.|+ |.+|...+..+...|. +|+++.++.++
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~~   41 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY-TVRATVRDPTN   41 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCTTC
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC-EEEEEECCcch
Confidence            4678999987 9999998888888898 89888877653

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=88.89  E-value=0.51  Score=38.67  Aligned_cols=44  Identities=18%  Similarity=0.118  Sum_probs=35.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      ..+|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+.+.|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~g   71 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRNPKRTARLFPSA   71 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESSHHHHHHHSBTT
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC
Confidence            3579999999999998888888888 8999999988877654434

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=88.86  E-value=0.72  Score=41.14  Aligned_cols=35  Identities=14%  Similarity=0.073  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.-.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            34579999999999998888888899 899998765

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=88.76  E-value=0.64  Score=39.27  Aligned_cols=56  Identities=16%  Similarity=0.134  Sum_probs=39.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh------hhHHH-HHHcCCCEEECCCC
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP------EKFEI-GKKFGITDFINPAT  256 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~------~~~~~-~~~~G~~~vi~~~~  256 (267)
                      -.+..+|||+|+ |.+|...+..+...|. +|++++++.      +.++. +++.++|.||+.-.
T Consensus         9 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~Dl~d~~~~~~~~~~~~~d~vih~A~   72 (292)
T 1vl0_A            9 HHHHMKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   72 (292)
T ss_dssp             ---CEEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             ccccceEEEECCCChHHHHHHHHHHhCCC-eEEeccCccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence            456778999987 9999999988888898 899987642      22322 23348898887643

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=88.74  E-value=0.39  Score=40.48  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=30.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++||.|+ |++|.+.+..+...|+ +|++++++.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~   62 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSI   62 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            5788999987 8999998888888899 899888764

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=88.74  E-value=0.63  Score=38.88  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|+++++..+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~   44 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGE   44 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCH
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchH
Confidence            4688999987 8999998888888899 8999887544

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=88.73  E-value=1.6  Score=37.66  Aligned_cols=69  Identities=17%  Similarity=0.090  Sum_probs=46.8

Q ss_pred             cchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          183 LSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       183 l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++|....... +++..+ --.|++++|+|.| .+|..++.++..+|+ +|.++.+..+.++... .-+|-+|+.
T Consensus       140 ~PcTp~gv~~-lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t~~L~~~~-~~ADIVI~A  210 (285)
T 3p2o_A          140 LPCTPLGVMK-LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKTKDLSLYT-RQADLIIVA  210 (285)
T ss_dssp             CCHHHHHHHH-HHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHH-TTCSEEEEC
T ss_pred             CCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCchhHHHHh-hcCCEEEEC
Confidence            4444444444 344444 4589999999985 589999999999999 8888876655544332 245666654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=88.73  E-value=0.97  Score=37.37  Aligned_cols=52  Identities=15%  Similarity=0.109  Sum_probs=42.3

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHHHHHHc
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++.++.+++.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~  140 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERN  140 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence            45567789999999999875 888888888854 34999999999988888653

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=88.69  E-value=0.51  Score=39.23  Aligned_cols=34  Identities=26%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +++||.|+ |++|.+.+..+...|+ +|++++++++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~   36 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCch
Confidence            46899987 8999999988888899 8999988753

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=88.66  E-value=0.51  Score=38.84  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=28.8

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++|||.|+ |.+|...+..+...|+ +|++++++++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~-~V~~~~r~~~   36 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH-TVIGIDRGQA   36 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCChh
Confidence            46899987 9999998888888898 8999988753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.66  E-value=0.52  Score=40.80  Aligned_cols=36  Identities=17%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+.+|||.|+ |.+|...++.+...|+ +|++++++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   40 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVN   40 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSS
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCc
Confidence            4578999987 9999999998888899 8999987654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=88.58  E-value=0.95  Score=39.29  Aligned_cols=45  Identities=16%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      -..+++|.|+|+|.+|...++.+. .|. +|++.++++++++.+.+.
T Consensus         9 ~~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A            9 HHHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHH
T ss_pred             ccCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHH
Confidence            345789999999999988777777 899 999999999999888765

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=88.58  E-value=0.77  Score=38.47  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+   |++|.+.++.+...|+ +|++++++++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   45 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER   45 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH
Confidence            4688999985   6999998888877899 8999998875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=88.56  E-value=0.39  Score=40.72  Aligned_cols=37  Identities=24%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|++++++.+
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~   63 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVA   63 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            35789999987 8999998888888899 8999887653

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=88.56  E-value=0.55  Score=40.26  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=29.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..++..+|||.|+ |.+|...++.+...|. +|++++++.+
T Consensus         8 ~~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   47 (321)
T 2pk3_A            8 HHHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNE   47 (321)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             cccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            3566789999987 9999999988888898 8998887653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=88.53  E-value=0.88  Score=36.71  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             EEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          205 TVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       205 ~VlI~G-~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +|+|+| +|.+|...+..+...|. +|+++++++++.+.+.+
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~~~~~~~~~   42 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            689999 79999988888777888 89999999887766543

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=88.38  E-value=0.53  Score=38.52  Aligned_cols=34  Identities=15%  Similarity=0.236  Sum_probs=28.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++++||.|+ |.+|...+..+...|+ +|+++++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~   36 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRR   36 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCc
Confidence            578999987 9999998888877898 888887653

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=88.30  E-value=1.4  Score=36.27  Aligned_cols=50  Identities=20%  Similarity=0.222  Sum_probs=40.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++.+||=+|+|. |..+..+++..+. +|+++|.+++.++.+++
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~   77 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   77 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHH
Confidence            44566789999999999865 6677788887787 99999999988877754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=88.26  E-value=0.79  Score=39.70  Aligned_cols=46  Identities=22%  Similarity=0.213  Sum_probs=39.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   54 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAH   54 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe
Confidence            4579999999999998888888898 899999999999888777753

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=88.26  E-value=0.41  Score=39.85  Aligned_cols=40  Identities=13%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhh
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEK  239 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~  239 (267)
                      ...++++|||.|+ +++|.+.+..+...|+ +|++++ ++.++
T Consensus         9 ~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~   50 (256)
T 3ezl_A            9 MVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPR   50 (256)
T ss_dssp             ----CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHH
Confidence            3457788999987 8999998888888899 787766 44443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=88.26  E-value=0.72  Score=38.97  Aligned_cols=36  Identities=17%  Similarity=0.202  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++||.|+   |++|.+.+..+...|+ +|++++++++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~   43 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES   43 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            5788999985   6999998888888899 8999988875

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=88.21  E-value=0.73  Score=38.80  Aligned_cols=40  Identities=10%  Similarity=0.114  Sum_probs=30.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc-CChhhHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD-INPEKFE  241 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~-~~~~~~~  241 (267)
                      ..++++||.|+ +++|.+.+..+...|+ +|++++ ++.++.+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~   64 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVS   64 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHH
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHH
Confidence            35678899987 8999998888888899 888887 5554443

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=88.15  E-value=0.37  Score=41.91  Aligned_cols=37  Identities=27%  Similarity=0.421  Sum_probs=28.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.++.+|||+|+ |.+|...++.+...|. +|+++++++
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~   53 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLRP   53 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCCC
Confidence            456678999998 9999999999988998 899888765

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=88.08  E-value=0.56  Score=39.92  Aligned_cols=34  Identities=15%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+|+|.|+ |.+|...+..+...|. +|++++|++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~   36 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKT   36 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCC
Confidence            457999998 9999998888887897 888888876

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=87.99  E-value=0.99  Score=39.47  Aligned_cols=42  Identities=26%  Similarity=0.345  Sum_probs=36.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      .+|.|+|+|.+|...+..+...|. +|.++++++++.+.+++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~   46 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDR   46 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhc
Confidence            479999999999988877777887 899999999988887765

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=87.99  E-value=1.2  Score=39.85  Aligned_cols=46  Identities=20%  Similarity=0.343  Sum_probs=40.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ..+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~   67 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIA   67 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCB
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCE
Confidence            4689999999999998888888898 999999999999988877653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=87.93  E-value=0.83  Score=40.28  Aligned_cols=46  Identities=22%  Similarity=0.224  Sum_probs=38.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh-HHHHHHcCCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK-FEIGKKFGIT  249 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~-~~~~~~~G~~  249 (267)
                      +.+|.|+|.|.+|.+.+..++..|. +|++.+++.++ .+.+++.|+.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~   62 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLK   62 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCE
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCE
Confidence            4579999999999999998888898 88888888765 6777777864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=87.85  E-value=0.54  Score=40.18  Aligned_cols=44  Identities=23%  Similarity=0.229  Sum_probs=37.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   46 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGAR   46 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCE
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCe
Confidence            68899999999988777777798 899999999998888776653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=87.82  E-value=0.82  Score=38.83  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=31.1

Q ss_pred             CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -.++++||.|+   |++|.+.+..+...|+ +|++++++++
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~   58 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK   58 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH
Confidence            35788999985   6999998888888899 8999988874

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=87.81  E-value=0.63  Score=41.43  Aligned_cols=37  Identities=35%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++.++
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  203 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSD  203 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch
Confidence            57899999999999999999999999 89999876543

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=87.64  E-value=0.47  Score=42.26  Aligned_cols=51  Identities=25%  Similarity=0.309  Sum_probs=37.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .+|+|+|+|.+|..+++.+.. .. .|.+.+++.++++.++++.....+|..+
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d   67 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN   67 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC
Confidence            379999999999988877653 44 8888999999988886654333345444

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=87.63  E-value=1.7  Score=37.60  Aligned_cols=35  Identities=26%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+.+|||+|+ |.+|...+..+...|. +|+++++..
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   59 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFS   59 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            4689999997 9999999998888898 999998844

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=87.61  E-value=0.97  Score=37.72  Aligned_cols=41  Identities=12%  Similarity=-0.046  Sum_probs=30.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~~  243 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|+++++. ++..+.+
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~   48 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETM   48 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHH
Confidence            3578999987 8999998888888899 88887544 4444433

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=87.58  E-value=0.95  Score=38.36  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=34.5

Q ss_pred             CCCCCCEEEEEcC-CH--HHHHHHHHHHHcCCCeEEEEcCCh--hhHHHHH
Q 024496          199 GVEVGSTVAIFGL-GA--VGLAVAEGARLNRASKIIGVDINP--EKFEIGK  244 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~--vG~~a~~la~~~g~~~vi~~~~~~--~~~~~~~  244 (267)
                      ..-.++++||.|+ |.  +|.+.+..+...|+ +|++++++.  +.++.+.
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~   71 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLC   71 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHH
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHH
Confidence            3456789999985 44  99998888888899 899998887  5555543

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=87.58  E-value=0.81  Score=39.55  Aligned_cols=44  Identities=16%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   74 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGA   74 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTC
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            579999999999998888877888 89999999998888777665

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=87.58  E-value=0.81  Score=39.12  Aligned_cols=34  Identities=18%  Similarity=0.142  Sum_probs=28.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-Ch
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NP  237 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~  237 (267)
                      |++|||.|+ |.+|...+..+...|+ +|+++.+ ++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~   36 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGY-SVNTTIRADP   36 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCCC-
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCC-EEEEEEeCCc
Confidence            578999997 9999999988888898 8988877 54

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=87.57  E-value=0.85  Score=38.30  Aligned_cols=40  Identities=15%  Similarity=0.118  Sum_probs=30.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEE-EcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIG-VDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~~  242 (267)
                      .++++||.|+ +++|.+.+..+...|+ +|++ ..++.++.+.
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~   66 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQE   66 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHH
Confidence            4678999987 8999998888888999 6644 5666655443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=87.57  E-value=2.2  Score=36.91  Aligned_cols=70  Identities=13%  Similarity=0.057  Sum_probs=46.3

Q ss_pred             hcchhhhhHHHHHHHHhCC-CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          182 LLSCGVSTGVGAAWKVAGV-EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~~-~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .++|.....+. +++..++ -.|++++|+|. +.+|..++.++..+|+ +|.++.+....++... .-+|-+|+.
T Consensus       140 ~~PcTp~gv~~-lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~T~~L~~~~-~~ADIVI~A  211 (286)
T 4a5o_A          140 LRPCTPKGIMT-LLASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRFTRDLADHV-SRADLVVVA  211 (286)
T ss_dssp             SCCHHHHHHHH-HHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHH-HTCSEEEEC
T ss_pred             CCCCCHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCCcCHHHHh-ccCCEEEEC
Confidence            34544444444 4455544 58999999997 4699999999999999 8888866444443322 245655554

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=87.47  E-value=0.57  Score=39.60  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=31.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      +.+|||+|+|.+|...+..+...|. +|++++++.++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            4679999999999999999888898 89999887654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=87.43  E-value=0.94  Score=39.59  Aligned_cols=34  Identities=15%  Similarity=0.103  Sum_probs=28.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++++||.|+ |++|.+.++.+...|+ +|+++.++
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~   38 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRD   38 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCc
Confidence            3678999987 8999999998888999 89887654

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=87.43  E-value=0.67  Score=39.64  Aligned_cols=35  Identities=23%  Similarity=0.321  Sum_probs=27.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +.+|||+|+ |.+|...++.+...|. +|++++++.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   37 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRA   37 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCC
Confidence            468999998 9999999988888898 9999886543

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=87.29  E-value=1.2  Score=38.92  Aligned_cols=33  Identities=27%  Similarity=0.292  Sum_probs=28.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      .++++||.|+ |++|...+..+...|+ +|+++++
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~   41 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDL   41 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            5788999987 8999999888888899 8888653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=87.25  E-value=0.89  Score=40.80  Aligned_cols=45  Identities=27%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++. +.+...+.|+
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~  219 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGV  219 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTC
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCe
Confidence            47899999999999999999999999 999999875 3344444553

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=87.17  E-value=1.1  Score=39.07  Aligned_cols=44  Identities=16%  Similarity=0.095  Sum_probs=37.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      ..+|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+.+.|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~-~V~~~~r~~~~~~~l~~~g   57 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGE-EVILWARRKEIVDLINVSH   57 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhC
Confidence            4589999999999988777777788 9999999999988887766

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=87.15  E-value=0.85  Score=38.25  Aligned_cols=36  Identities=14%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CCCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.++++||.|+   |++|.+.++.+...|+ +|+++++++
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH
Confidence            35788999975   6999998888888899 899998876

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=87.13  E-value=0.58  Score=40.44  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .+|||.|+ |.+|...+..+...|. +|+++++++++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   50 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQI   50 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhh
Confidence            47999997 9999999988888898 999998876543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=87.11  E-value=1.3  Score=37.61  Aligned_cols=37  Identities=35%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKF  240 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~  240 (267)
                      .++|||+|+ |.+|...+..+...| . +|++++|++++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~   43 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKK   43 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCH
Confidence            468999998 999999888887778 7 999999887654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=87.11  E-value=1.2  Score=37.90  Aligned_cols=45  Identities=31%  Similarity=0.489  Sum_probs=37.6

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLN--RASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|.|.+|.+.+..+...  +. +|++.++++++.+.+.+.|..
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~-~V~~~d~~~~~~~~~~~~g~~   53 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHY-KIVGYNRSDRSRDIALERGIV   53 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTS-EEEEECSSHHHHHHHHHTTSC
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCc-EEEEEcCCHHHHHHHHHcCCc
Confidence            5799999999999887777666  45 899999999999888888863

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=87.09  E-value=1.3  Score=38.56  Aligned_cols=44  Identities=27%  Similarity=0.360  Sum_probs=36.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      ..+|+|+|+|.+|.+.+..+...|. +|.++ +.+++.+.+++.|.
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~G~-~V~l~-~~~~~~~~i~~~g~   62 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARAGH-EVILI-ARPQHVQAIEATGL   62 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHTTC-EEEEE-CCHHHHHHHHHHCE
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-eEEEE-EcHhHHHHHHhCCe
Confidence            3689999999999988888777888 88888 78888888877664

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=87.08  E-value=1  Score=39.06  Aligned_cols=43  Identities=21%  Similarity=0.105  Sum_probs=36.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDI--NPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~G~  248 (267)
                      +|.|+|+|.+|.+.+..+...|. +|.++++  ++++.+.+++.|.
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~   46 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGRE   46 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCC-eEEEEEccCCHHHHHHHHHhCc
Confidence            68999999999988777776787 9999999  8888888877663

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=87.06  E-value=1.7  Score=40.31  Aligned_cols=39  Identities=23%  Similarity=0.160  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +.++.++||.|+ |++|...+..+...|+++|+.++++..
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~  262 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP  262 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCC
Confidence            577899999987 999999888877789967999988764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=86.93  E-value=1.1  Score=38.18  Aligned_cols=44  Identities=18%  Similarity=0.243  Sum_probs=37.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+.|.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   48 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGA   48 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCC
Confidence            579999999999988887777888 89999999998888776664

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=86.93  E-value=0.74  Score=40.64  Aligned_cols=38  Identities=24%  Similarity=0.213  Sum_probs=33.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~  182 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE  182 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh
Confidence            47899999999999999999999999 999999877553

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=86.92  E-value=0.81  Score=39.02  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=36.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~   44 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGE   44 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTC
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            58899999999988887777888 89999999998888776664

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=86.90  E-value=0.51  Score=38.86  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcC-CCeEEEEcCChhhHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNR-ASKIIGVDINPEKFE  241 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~  241 (267)
                      ++|||.|+ |.+|...++.+...| + +|++++|++++.+
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~   62 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIH   62 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSC
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhc
Confidence            57999997 999999999888888 6 9999998876543

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=86.90  E-value=0.71  Score=36.77  Aligned_cols=49  Identities=16%  Similarity=0.367  Sum_probs=35.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh----------hhHHH-HHHc-CCCEEECCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP----------EKFEI-GKKF-GITDFINPA  255 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~----------~~~~~-~~~~-G~~~vi~~~  255 (267)
                      ++||.|+ |.+|...++.+. .|+ +|+++++++          +..+. ++++ ..|.+|+..
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~~~~~D~~~~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSSSEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCccceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence            7999987 999999888888 898 899887763          23332 3344 367777653

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=86.88  E-value=0.76  Score=40.11  Aligned_cols=37  Identities=19%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .+.+|||.|+ |.+|...+..+...|. +|++++++.++
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~   45 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPT   45 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcc
Confidence            3678999997 9999999988888898 89999886543

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=86.87  E-value=0.63  Score=41.07  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|++|.|+|.|.+|...++.++..|. +|++.+++.+
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  180 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGA-TVIGEDVFEI  180 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            56799999999999999999999999 8999987764

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=86.87  E-value=0.95  Score=38.08  Aligned_cols=37  Identities=14%  Similarity=0.295  Sum_probs=31.6

Q ss_pred             CCCEEEEEcC---CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGL---GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~---g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .++++||.|+   +++|.+.++.+...|+ +|+++++++++
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~   45 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLR   45 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHH
Confidence            5788999984   7999998888888899 89999988765

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=86.87  E-value=1.6  Score=40.97  Aligned_cols=50  Identities=22%  Similarity=0.137  Sum_probs=39.0

Q ss_pred             CCCEEEEEcCCHHHHH-HHHHHHHcCCCeEEEEcCCh--hhHHHHHHcCCCEEE
Q 024496          202 VGSTVAIFGLGAVGLA-VAEGARLNRASKIIGVDINP--EKFEIGKKFGITDFI  252 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~-a~~la~~~g~~~vi~~~~~~--~~~~~~~~~G~~~vi  252 (267)
                      ..++|.++|.|++|++ ++.+++.+|+ +|.+.|..+  ...+.+++.|+.-.+
T Consensus        18 ~~~~i~~iGiGg~Gms~lA~~l~~~G~-~V~~sD~~~~~~~~~~L~~~gi~~~~   70 (524)
T 3hn7_A           18 QGMHIHILGICGTFMGSLALLARALGH-TVTGSDANIYPPMSTQLEQAGVTIEE   70 (524)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCCTTHHHHHHHTTCEEEE
T ss_pred             cCCEEEEEEecHhhHHHHHHHHHhCCC-EEEEECCCCCcHHHHHHHHCCCEEEC
Confidence            4678999999999997 5888899999 999999763  345667778876443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=86.80  E-value=1  Score=40.09  Aligned_cols=33  Identities=21%  Similarity=0.215  Sum_probs=28.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~   38 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            369999999999998888888899 899998754

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=86.66  E-value=0.9  Score=39.59  Aligned_cols=34  Identities=21%  Similarity=0.095  Sum_probs=29.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+|||+|+ |.+|...+..+...|. +|++++|++
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~   44 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPG   44 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCC
Confidence            357999998 9999999998888897 899998866

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=86.65  E-value=1.1  Score=37.80  Aligned_cols=40  Identities=23%  Similarity=0.140  Sum_probs=31.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC-ChhhHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI-NPEKFE  241 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~-~~~~~~  241 (267)
                      -.++++||.|+ +++|.+.++.+...|+ +|+++++ +.++.+
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~   57 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAE   57 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHH
Confidence            45789999987 8999999888888999 8877654 444443

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=86.59  E-value=0.69  Score=40.63  Aligned_cols=38  Identities=18%  Similarity=0.437  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLN-RASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~-g~~~vi~~~~~~~~~  240 (267)
                      ...+|||+|+ |.+|...+..+... |. +|++++++.++.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~   62 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRL   62 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhh
Confidence            4578999997 99999988888777 77 999998876544

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=86.49  E-value=0.7  Score=39.99  Aligned_cols=37  Identities=19%  Similarity=0.120  Sum_probs=30.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ...+.+|||.|+ |.+|...+..+...|. +|++++++.
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~   54 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFA   54 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            345679999997 9999999888888898 899988743

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=86.49  E-value=2.2  Score=34.51  Aligned_cols=46  Identities=20%  Similarity=0.177  Sum_probs=38.0

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcC-----CCeEEEEcCChhhHHHHHH
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNR-----ASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g-----~~~vi~~~~~~~~~~~~~~  245 (267)
                      .++++++||-+|+|. |..+..+++..+     ..+|++++.+++.++.+++
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~  127 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE  127 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHH
Confidence            588999999999876 788888888775     2399999999988887764

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=86.46  E-value=0.69  Score=40.87  Aligned_cols=37  Identities=27%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -.|++|.|+|.|.+|...++.++.+|+ +|++.+++.+
T Consensus       143 l~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~  179 (333)
T 1dxy_A          143 LGQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPM  179 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCcc
Confidence            357899999999999999999999999 9999987764

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=86.43  E-value=1.9  Score=40.31  Aligned_cols=38  Identities=24%  Similarity=0.237  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+++++||.|+ |++|...+..+...|+.+|+.++++.
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~  294 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRG  294 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSG
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            567899999987 99999988888888997788888875

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=86.41  E-value=0.84  Score=40.62  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=28.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~  237 (267)
                      +|++|+|+|+|+-|+.++..++..+.. +|.+++.++
T Consensus         1 aGKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            488999999999999888776655532 888887654

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=86.38  E-value=1.7  Score=36.23  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ..+.+|.|+|+|.+|.+.+..+...|. +|++.++++++
T Consensus        17 ~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~   54 (245)
T 3dtt_A           17 FQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA   54 (245)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            356789999999999998888888898 89999999887

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=86.28  E-value=2.2  Score=36.69  Aligned_cols=68  Identities=9%  Similarity=-0.010  Sum_probs=46.0

Q ss_pred             cchhhhhHHHHHHHHhCCCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          183 LSCGVSTGVGAAWKVAGVEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       183 l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++|....... +++..+ -.|++++|+|.| .+|..++.++..+|+ +|.++.+....++...+ -+|-+|+.
T Consensus       132 ~PcTp~gv~~-lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~t~~L~~~~~-~ADIVI~A  200 (276)
T 3ngx_A          132 VPATPRAVID-IMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSKTKDIGSMTR-SSKIVVVA  200 (276)
T ss_dssp             CCHHHHHHHH-HHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSCHHHHHH-HSSEEEEC
T ss_pred             CCCcHHHHHH-HHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCCcccHHHhhc-cCCEEEEC
Confidence            4444444444 445556 789999999985 699999999999999 88888765544443321 24545543

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=86.27  E-value=0.38  Score=40.74  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=29.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc-CCCeEEEEcCChhhHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLN-RASKIIGVDINPEKFE  241 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~  241 (267)
                      +|||+|+ |.+|...++.+... |. +|+++.|++++..
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~   39 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVP   39 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHH
Confidence            5899997 99999988887776 77 8999988876544

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=86.23  E-value=0.92  Score=35.40  Aligned_cols=31  Identities=26%  Similarity=0.236  Sum_probs=26.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +|+|+|+|.+|+.++..+...|. +|.++++.
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~   33 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGL-KVLVLDGG   33 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            58999999999999988888898 78888754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=86.23  E-value=1.5  Score=33.96  Aligned_cols=49  Identities=20%  Similarity=0.180  Sum_probs=38.9

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.......++++||-+|+|. |..+..+++..  .++++++.+++.++.+++
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~   73 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV--RRVYAIDRNPEAISTTEM   73 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS--SEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc--CEEEEEECCHHHHHHHHH
Confidence            34556788999999999876 77777777755  499999999988888764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=86.19  E-value=0.9  Score=40.49  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=30.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ....|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34689999999999999988888899 999998754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=86.19  E-value=0.81  Score=38.90  Aligned_cols=51  Identities=18%  Similarity=0.063  Sum_probs=38.1

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH----HHH--HH-cCCCEEECCCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF----EIG--KK-FGITDFINPAT  256 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~----~~~--~~-~G~~~vi~~~~  256 (267)
                      +|||.|+ |.+|...+..+...|. +|+++.|++++.    +.+  .. -++|.+++-..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~l~~~d~vihla~   60 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGH-EVTLVSRKPGPGRITWDELAASGLPSCDAAVNLAG   60 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTEEEHHHHHHHCCCSCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCcCeeecchhhHhhccCCCEEEEecc
Confidence            6999997 9999999999999999 899998865432    111  12 36788887543

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=86.16  E-value=0.95  Score=39.07  Aligned_cols=35  Identities=14%  Similarity=0.095  Sum_probs=29.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +++|||.|+ |.+|...+..+...|. +|+++.++.+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~~   44 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDPD   44 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCTT
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCcc
Confidence            678999987 9999999988888898 8888777654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=86.15  E-value=0.8  Score=39.73  Aligned_cols=37  Identities=24%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -.|++|.|+|.|.+|...++.++.+|. +|++.+++.+
T Consensus       120 l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  156 (290)
T 3gvx_A          120 LYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSV  156 (290)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCC
T ss_pred             eecchheeeccCchhHHHHHHHHhhCc-EEEEEecccc
Confidence            357899999999999999999999999 9999988764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=86.15  E-value=1.2  Score=41.23  Aligned_cols=43  Identities=21%  Similarity=0.299  Sum_probs=37.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      ..+|.|+|+|.+|+..+..+...|. +|+++++++++.+.+++-
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~-~V~~~d~~~~~v~~l~~~   50 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGH-DVFCLDVDQAKIDILNNG   50 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHCC
Confidence            4589999999999987777777888 999999999999988764

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=86.12  E-value=1.3  Score=40.52  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=31.2

Q ss_pred             hCC-CCCCEEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChh
Q 024496          198 AGV-EVGSTVAIFGL-GAVGLAVAEGARL-NRASKIIGVDINPE  238 (267)
Q Consensus       198 ~~~-~~g~~VlI~G~-g~vG~~a~~la~~-~g~~~vi~~~~~~~  238 (267)
                      ..+ +.++++||.|+ +++|++.+..+.. .|+ +|++++++.+
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~   97 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKP   97 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCC
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCch
Confidence            345 45788899987 8999997777776 899 8988877653

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=86.12  E-value=1  Score=36.78  Aligned_cols=47  Identities=13%  Similarity=0.269  Sum_probs=38.0

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ....++++||-+|+| .|..+..+++.....+|++++.+++.++.+++
T Consensus        50 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~   96 (233)
T 2gpy_A           50 LKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHK   96 (233)
T ss_dssp             HHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred             HhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence            345678899999987 67888888888743499999999998888764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=86.11  E-value=2.2  Score=34.53  Aligned_cols=46  Identities=26%  Similarity=0.317  Sum_probs=37.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      .++++++||-+|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus        74 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~  120 (226)
T 1i1n_A           74 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVN  120 (226)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             hCCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            378899999999875 7777788887763 299999999988887753

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=86.10  E-value=1.5  Score=36.26  Aligned_cols=52  Identities=17%  Similarity=0.104  Sum_probs=42.2

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      +.....+.++.+||-+|+| .|..+..+++..+. +|+++|.+++.++.+++..
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~   98 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERV   98 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHh
Confidence            3445568899999999987 67777788886677 9999999999999988754

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=86.09  E-value=0.76  Score=42.60  Aligned_cols=43  Identities=19%  Similarity=0.169  Sum_probs=35.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLN-RASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~-g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+.+|+|+|+|.+|.+++..+... +. +|++++|+.++.+.+.+
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~   65 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAK   65 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHG
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHH
Confidence            456899999999999988888776 56 89999999888776643

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=86.09  E-value=0.91  Score=39.67  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.++
T Consensus       143 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~  179 (311)
T 2cuk_A          143 QGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHARTPKP  179 (311)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCS
T ss_pred             CCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCCCcc
Confidence            57799999999999999999999998 99999887643

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=86.06  E-value=0.77  Score=38.92  Aligned_cols=42  Identities=26%  Similarity=0.124  Sum_probs=34.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|.|+|+|.+|...+..+.. |. +|+++++++++.+.+.+.|.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~   44 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFG   44 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHC
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCC
Confidence            58899999999987777777 88 79999999988887766554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=85.98  E-value=0.94  Score=38.57  Aligned_cols=35  Identities=17%  Similarity=0.108  Sum_probs=30.8

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +.+|||+|+ |.+|...+..+...|. +|++++++..
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            578999998 9999999998888898 8999988654

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=85.96  E-value=0.6  Score=40.89  Aligned_cols=47  Identities=13%  Similarity=0.044  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~v  251 (267)
                      ..++++|.|.|.+|...++.+...|.  |+++++++++.+ +++.|...+
T Consensus       114 ~~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~~~~-~~~~~~~~i  160 (336)
T 1lnq_A          114 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKK-VLRSGANFV  160 (336)
T ss_dssp             --CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGGHHH-HHHTTCEEE
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChhhhh-HHhCCcEEE
Confidence            35689999999999988888877776  889999999999 877776533

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=85.92  E-value=1  Score=40.15  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ...|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   38 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   38 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            3579999999999999988888899 899987654

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=85.90  E-value=1.4  Score=40.50  Aligned_cols=41  Identities=27%  Similarity=0.309  Sum_probs=36.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+|.|+|.|.+|...+..+...|. +|+++++++++.+.+.+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~   43 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNS   43 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHc
Confidence            479999999999998887777898 99999999999888776

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=85.88  E-value=0.93  Score=39.25  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=29.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+.+|||.|+ |.+|...+..+...|. +|++++++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~   55 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFA   55 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCC
Confidence            4678999987 9999999988888898 899988764

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=85.84  E-value=0.57  Score=39.36  Aligned_cols=43  Identities=30%  Similarity=0.376  Sum_probs=33.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLN--RASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|||.|+ |.+|...+..+...  |. +|+++++++++.+.+...+.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~   46 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGI   46 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCC
Confidence            4899998 99999988888777  87 89999888776554444443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=85.82  E-value=0.78  Score=42.24  Aligned_cols=41  Identities=15%  Similarity=-0.001  Sum_probs=34.5

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++|+|+|+|.+|.+.+..+...|. +|++++++.++.+.+.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la   43 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLS   43 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHH
Confidence            5789999999999998888888887 7999999987776543

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=85.77  E-value=0.93  Score=39.93  Aligned_cols=36  Identities=28%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|++|.|+|.|.+|...++.++.+|. +|++.+++.+
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCC
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCCcc
Confidence            47899999999999999999999999 9999987654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=85.76  E-value=1.2  Score=40.97  Aligned_cols=40  Identities=15%  Similarity=0.037  Sum_probs=32.3

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHc---CCCeEEEEcCChhhH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLN---RASKIIGVDINPEKF  240 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~---g~~~vi~~~~~~~~~  240 (267)
                      ...+.+|||.|+ |.+|...+..+...   |. +|++++|+++..
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~-~V~~l~R~~~~~  113 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG-RLICLVRAESDE  113 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC-EEEEEECSSSHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC-EEEEEECCCCcH
Confidence            456789999997 99999887776666   77 999999887654

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=85.73  E-value=0.95  Score=37.03  Aligned_cols=39  Identities=18%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRAS-KIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~-~vi~~~~~~~~~  240 (267)
                      .+.+|||.|+ |.+|...+..+...|+. +|+++++++++.
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~   57 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF   57 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence            4678999997 99999988888878873 788888876543

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=85.72  E-value=1.3  Score=39.00  Aligned_cols=50  Identities=20%  Similarity=0.209  Sum_probs=37.2

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC--ChhhHHHHHHcCCCEEECCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDI--NPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~--~~~~~~~~~~~G~~~vi~~~  255 (267)
                      +|||.|+ |.+|...+..+...|..+|+.+++  +++.++.+.+ ++|.||+..
T Consensus         2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d~~~l~~~~~-~~d~Vih~a   54 (369)
T 3st7_A            2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTKEEELESALL-KADFIVHLA   54 (369)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCCHHHHHHHHH-HCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCCHHHHHHHhc-cCCEEEECC
Confidence            6999997 999999888888778658888887  3444444333 688888643

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=85.68  E-value=2.8  Score=36.53  Aligned_cols=70  Identities=13%  Similarity=0.139  Sum_probs=46.2

Q ss_pred             hcchhhhhHHHHHHHHhC-CCCCCEEEEEcCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          182 LLSCGVSTGVGAAWKVAG-VEVGSTVAIFGLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       182 ~l~~~~~ta~~a~~~~~~-~~~g~~VlI~G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .++|....... +++..+ --.|.+++|+|.| .+|.-++.++..+|+ +|.++.+..+.++... ..+|-+|..
T Consensus       144 ~~PcTp~gi~~-ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t~~L~~~~-~~ADIVI~A  215 (301)
T 1a4i_A          144 FIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKTAHLDEEV-NKGDILVVA  215 (301)
T ss_dssp             CCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTCSSHHHHH-TTCSEEEEC
T ss_pred             ccCchHHHHHH-HHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECCcccHHHHh-ccCCEEEEC
Confidence            44544433333 344444 3579999999997 689999999999999 8888866554443322 245655553

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=85.66  E-value=1  Score=39.46  Aligned_cols=35  Identities=29%  Similarity=0.240  Sum_probs=29.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHH--cCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARL--NRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~--~g~~~vi~~~~~~  237 (267)
                      .+.+|||.|+ |.+|...+..+..  .|+ +|++++++.
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~   46 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFR   46 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCC
Confidence            4689999987 9999998888887  888 999998754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=85.62  E-value=2.1  Score=37.06  Aligned_cols=51  Identities=24%  Similarity=0.329  Sum_probs=40.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++.++.+++
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~  118 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence            45567789999999999876 7777888886542 479999999998888764

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=85.60  E-value=0.62  Score=40.15  Aligned_cols=45  Identities=22%  Similarity=0.209  Sum_probs=39.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~   60 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGAT   60 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCE
Confidence            579999999999988888887888 899999999999988887753

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=85.54  E-value=1.5  Score=39.63  Aligned_cols=41  Identities=29%  Similarity=0.251  Sum_probs=33.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC--CeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRA--SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~--~~vi~~~~~~~~~~~~~  244 (267)
                      .+|+|+|+|.+|...++.+...+.  .+|++.+++.++.+.+.
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la   44 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIA   44 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHH
Confidence            379999999999998888877773  48999999998877654

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=85.52  E-value=3.8  Score=37.36  Aligned_cols=43  Identities=26%  Similarity=0.248  Sum_probs=35.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEE-EEcC----------ChhhHHHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKII-GVDI----------NPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi-~~~~----------~~~~~~~~~  244 (267)
                      -+|.+|+|.|.|.+|..+++++...|+ +|+ +.|+          +.+.+..++
T Consensus       216 l~gk~vaVqG~GnVG~~~a~~L~~~Ga-kVVavsD~~G~i~dp~Gld~~~l~~~~  269 (419)
T 3aoe_E          216 LRGARVVVQGLGQVGAAVALHAERLGM-RVVAVATSMGGMYAPEGLDVAEVLSAY  269 (419)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEEETTEEEECTTCCCHHHHHHHH
T ss_pred             ccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEcCCCeEECCCCCCHHHHHHHH
Confidence            468999999999999999999999999 777 6676          555555554

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=85.50  E-value=1.2  Score=40.68  Aligned_cols=40  Identities=33%  Similarity=0.577  Sum_probs=34.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+.+
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~-~V~~~d~~~~~~~~l~~   41 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHhC
Confidence            68899999999987777777888 89999999999888765

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=85.37  E-value=1.1  Score=38.24  Aligned_cols=33  Identities=18%  Similarity=0.063  Sum_probs=28.9

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..+|||+|+ |.+|...+..+...|. +|++++|+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~   37 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRP   37 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCS
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            357999997 9999999988888897 89999887

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=85.36  E-value=1.6  Score=40.93  Aligned_cols=38  Identities=13%  Similarity=0.052  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCC
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DIN  236 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~  236 (267)
                      .+++++++||.|+ |++|...+..+...|+.+++.+ +++
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~  286 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPS  286 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCC
Confidence            3678899999987 9999998888777899668877 777

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=85.35  E-value=1.7  Score=35.59  Aligned_cols=48  Identities=15%  Similarity=0.200  Sum_probs=39.1

Q ss_pred             HhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       197 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ...++++++||-+|+|. |..+..+++..+..+|++++.+++.++.+++
T Consensus        69 ~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~  116 (230)
T 1fbn_A           69 VMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLD  116 (230)
T ss_dssp             CCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHH
T ss_pred             ccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHH
Confidence            34577899999999876 7778888888775599999999988877764

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=85.32  E-value=1.5  Score=40.55  Aligned_cols=40  Identities=25%  Similarity=0.520  Sum_probs=34.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .+|.|+|+|.+|...++.+...|. .|+++++++++++.++
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~   77 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAK   77 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHH
Confidence            579999999999988888887898 9999999998776653

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=85.31  E-value=1.4  Score=38.24  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=32.1

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ...+|+|+|+|++|..++..+-..|..++.++|...
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457999999999999999999889999999998665

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=85.29  E-value=1.4  Score=41.04  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~-~v~viEr~~   38 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGV-RVLVVERRP   38 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            469999999999998888888899 899998764

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=85.23  E-value=0.75  Score=37.78  Aligned_cols=47  Identities=30%  Similarity=0.344  Sum_probs=37.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEE-EcCChhhHHHHH-HcCCCEE
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIG-VDINPEKFEIGK-KFGITDF  251 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~-~~~~~~~~~~~~-~~G~~~v  251 (267)
                      .+|.|+|+|.+|.+.+..+...|. +|++ .++++++.+.+. ++|....
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r~~~~~~~l~~~~g~~~~   72 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQI-PAIIANSRGPASLSSVTDRFGASVK   72 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTC-CEEEECTTCGGGGHHHHHHHTTTEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCCHHHHHHHHHHhCCCcc
Confidence            479999999999998888887898 6666 899998887754 5675543

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=85.23  E-value=1.2  Score=35.45  Aligned_cols=37  Identities=19%  Similarity=0.144  Sum_probs=28.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +++||.|+ |.+|...+..+...   +|+++++++++.+.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~   38 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAEL   38 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHH
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHH
Confidence            36899987 99999776665544   899999998776654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=85.21  E-value=0.51  Score=39.72  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=33.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHc--CCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGL-GAVGLAVAEGARLN--RASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~--g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|||+|+ |.+|...++.+...  |. +|+++++++++.+.+...+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~   47 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGV   47 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCC
Confidence            5899997 99999988888777  77 89999888776655444443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=85.19  E-value=1.7  Score=36.69  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=40.2

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +....++.++.+||-+|+|. |..+..+++..|. +|++++.+++.++.+++
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~  105 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  105 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHH
Confidence            34556788999999999865 6677788876788 99999999988887765

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=85.11  E-value=1.1  Score=42.79  Aligned_cols=54  Identities=19%  Similarity=0.151  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC---------ChhhHHH----HHHcCCCEEECCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI---------NPEKFEI----GKKFGITDFINPAT  256 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~---------~~~~~~~----~~~~G~~~vi~~~~  256 (267)
                      .|+++||.|+ +++|.+.+..+...|+ +|+++++         +.++.+.    +++.|...+.|..+
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d   85 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNS   85 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCC
Confidence            5788999987 8999998888888899 9998876         4444433    23456565666655

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=85.07  E-value=1.3  Score=39.24  Aligned_cols=38  Identities=26%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ...+.+|||.|+ |.+|...+..+...|. +|+++++...
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~-~V~~~~r~~~   46 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNY-EVCIVDNLVR   46 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCHH
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCC-eEEEEEecCc
Confidence            567889999987 9999998888888898 9999987643

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=85.04  E-value=0.53  Score=38.47  Aligned_cols=53  Identities=11%  Similarity=0.132  Sum_probs=37.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh-------hhHH-HHHHcC-CCEEECCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP-------EKFE-IGKKFG-ITDFINPA  255 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~-------~~~~-~~~~~G-~~~vi~~~  255 (267)
                      .++++||.|+ +++|.+.++.+...|+ +|++++++.       +..+ .++++| .|.+|+..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~D~~~~~~v~~~~~~~g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTGLDISDEKSVYHYFETIGAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGTCCTTCHHHHHHHHHHHCSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcccCCCCHHHHHHHHHHhCCCCEEEECC
Confidence            4678999987 8999998888877899 899987653       2222 234554 57666653

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=85.03  E-value=1.6  Score=36.71  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=30.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .+.+|+|+|+|++|..++..+...|..++.++|..
T Consensus        27 ~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           27 LDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             HTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             hcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            35799999999999999998889999999998654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=84.94  E-value=1  Score=39.77  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=29.6

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ...|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~   44 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSS   44 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            4579999999999999888888898 999998654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=84.91  E-value=3.6  Score=34.31  Aligned_cols=43  Identities=26%  Similarity=0.451  Sum_probs=35.2

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++++||-+|+|. |..++.+++ .|+ +|+++|.++..++.+++
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHH
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHH
Confidence            67899999999865 666677666 578 99999999988887764

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=84.89  E-value=1.3  Score=37.16  Aligned_cols=46  Identities=9%  Similarity=0.046  Sum_probs=37.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      .+|.|+|+|.+|...+..+...|.+.|.+.++++++.+.+.+ +|..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~   57 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAE   57 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCc
Confidence            479999999999988887777788448899999998887755 4754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	267
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	2e-38
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-37
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	9e-36
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-34
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	1e-32
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	9e-24
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	9e-20
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	1e-19
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	1e-19
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	2e-18
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	6e-18
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-17
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-16
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-16
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	4e-16
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	7e-16
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	6e-15
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	7e-15
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	5e-14
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-13
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	4e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	1e-12
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	8e-12
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	8e-11
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	4e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	9e-07
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	2e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	8e-05
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	4e-04
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	9e-04
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	0.002
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	0.003
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	0.003

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  131 bits (329), Expect = 2e-38
 Identities = 81/209 (38%), Positives = 105/209 (50%), Gaps = 14/209 (6%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGK I CKAA+   P KPL +E I V PPKA E+RIKIL + +C SD +  K        
Sbjct: 3   AGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFP 62

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
            +     HEAVGVVES+G  V  VK  D V+P+F   CG CR CKSS SN C K   G +
Sbjct: 63  VILG---HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAK 119

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             +  D TSRF   +G  I++ +  S+FTEY+VV    V KI P I +            
Sbjct: 120 TGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL--------- 169

Query: 190 GVGAAWKVAGVEVGSTVAIFGLGAVGLAV 218
            V     +  +     +   G G   + +
Sbjct: 170 -VSTKLTLDQINKAFELLSSGQGVRSIMI 197

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  129 bits (324), Expect = 1e-37
 Identities = 76/200 (38%), Positives = 105/200 (52%), Gaps = 3/200 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
            GKVI+CKAA+     KPLVIEEIEV+ P A EIRIKI+ T +CH+D+          K 
Sbjct: 3   VGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGK--HKD 60

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PV+ GHE  G+VESVG  V E +  + V+P+F   CGECR C+S K+N C K      
Sbjct: 61  GFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANES 120

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
           P++     +RF       +  FL  S+F++Y+VV+   V KI P + L         + +
Sbjct: 121 PDVMSPKETRFTCKGRK-VLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLES 179

Query: 190 GVGAAWKVAGVEVGSTVAIF 209
              A   +   +   TV   
Sbjct: 180 VNDAIDLMKHGKCIRTVLSL 199

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  124 bits (312), Expect = 9e-36
 Identities = 81/199 (40%), Positives = 109/199 (54%), Gaps = 3/199 (1%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           A +VI+CKAA+    GKPL IEEIEV PPKA E+RIKI+ T++CH+D          P+ 
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSG--ADPEG 58

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PVI GH   G+VESVGE V ++K  D V+P++   CGEC+ C + K+N C K      
Sbjct: 59  CFPVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQG 118

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVST 189
             +  DGTSRF   KG  I H++  S+F+EY+VV    V KI P I +      +     
Sbjct: 119 KGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDE 177

Query: 190 GVGAAWKVAGVEVGSTVAI 208
              A   +   +   TV  
Sbjct: 178 INKAFELMHSGKSIRTVVK 196

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  121 bits (303), Expect = 2e-34
 Identities = 65/203 (32%), Positives = 97/203 (47%), Gaps = 11/203 (5%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
            GKVI+CKAAI    G PL IEEIEV PPKA E+RI+++ T +C +D+            
Sbjct: 3   QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFP 62

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF----G 125
            +     HE  G+VESVG  V   K  D V+P F   C  C+ C S  +N C K      
Sbjct: 63  VVLG---HECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKY 119

Query: 126 RGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSC 185
                 +  D TSRF       I+HF+ +SSF++Y+VV   ++ ++     L +    + 
Sbjct: 120 PTIDQELMEDRTSRFTCKGRS-IYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHAL 178

Query: 186 GVSTGVGAAWKVAGVEVGSTVAI 208
              +       +  ++ G ++  
Sbjct: 179 PFES---INDAIDLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  116 bits (291), Expect = 1e-32
 Identities = 77/203 (37%), Positives = 105/203 (51%), Gaps = 11/203 (5%)

Query: 10  AGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           AGKVI+CKAA+     KP  IEE+EV PPKA E+RIK++ T +C SD      +   P  
Sbjct: 3   AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPL- 61

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
             PVI GHEA G+VES+GE V  V+  D V+P+F   CG+CR CK  + N C K      
Sbjct: 62  --PVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLK-NDLSM 118

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPL--GIACLLSCGV 187
           P       +     +G  IHHFL  S+F++Y+VVD   V KI     L   I  +L    
Sbjct: 119 PRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALDPLITHVLPFE- 177

Query: 188 STGVGAAWKVAGVEVGSTVAIFG 210
              +   + +  +  G ++    
Sbjct: 178 --KINEGFDL--LRSGESIRTIL 196

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 93.1 bits (230), Expect = 9e-24
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 5/193 (2%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
            AA+    G    ++ +++  P+  E+ +K++ T +CH+D+           +PLP + G
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQK---YPVPLPAVLG 61

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKF-GRGYRPNMPRD 135
           HE  G++E++G  V E++  D V+ + +  CG+C  C +     CS+F GR +       
Sbjct: 62  HEGSGIIEAIGPNVTELQVGDHVV-LSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
             +     +G V  HF   SSF  Y++    + VK+T   P                A  
Sbjct: 121 NHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAID 180

Query: 196 KVAGVEVGSTVAI 208
              G+ +   + I
Sbjct: 181 SRKGITLKPIIKI 193

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.2 bits (202), Expect = 9e-20
 Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 22/198 (11%)

Query: 17  KAAICRIPGKPLVIEEIEVEPP--KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +    +        ++ + +P      +I IKI    +C SD+           + +P++
Sbjct: 8   EGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAG--HWGNMKMPLV 65

Query: 75  FGHEAVGVVESVGEYVEEVKE--RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNM 132
            GHE VG V  +G       +  + + +      C EC  CK+     C+KF   Y    
Sbjct: 66  VGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPY 125

Query: 133 PRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVG 192
                             +++   +  Y  V    VV I  +I +    +   GV     
Sbjct: 126 E---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAF- 169

Query: 193 AAWKVAGVEVGSTVAIFG 210
              +   V    T+  + 
Sbjct: 170 ERMEKGDVRYRFTLVGYD 187

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 81.8 bits (201), Expect = 1e-19
 Identities = 48/202 (23%), Positives = 82/202 (40%), Gaps = 28/202 (13%)

Query: 14  IRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPV 73
           ++  A +     +PLV +E E+       I ++IL   +C SDV  ++   + P++PLP+
Sbjct: 3   LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFR--GEDPRVPLPI 60

Query: 74  IFGHEAVGVVESVGEYVEEVKERD-----LVLPIFHRDCGECRDCKSSKSNTCSKFGRGY 128
           I GHE  G V  V     ++         L++      CGEC  CK SK        + Y
Sbjct: 61  ILGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVY 120

Query: 129 RPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI-THVVKITPHIPLGIACLLSCGV 187
             N    G S +  L+G           ++ + V+D  T V+K++  I   +   L    
Sbjct: 121 GIN---RGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN 165

Query: 188 STGVGAAWKVAGVEVGSTVAIF 209
                 A ++        V ++
Sbjct: 166 -----KALELMESREALKVILY 182

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.5 bits (200), Expect = 1e-19
 Identities = 49/194 (25%), Positives = 75/194 (38%), Gaps = 26/194 (13%)

Query: 16  CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIF 75
            KAA+    G PL IEE++V  P   ++ +KI  + +CH+D+   +    +   PLP I 
Sbjct: 6   MKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKP-PLPFIP 64

Query: 76  GHEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
           GHE VG V +VG  V  VKE D V +P  +  CG C  C +     C             
Sbjct: 65  GHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQ---------- 114

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
                           +     + EY + D  +V  +  ++   I       ++  +   
Sbjct: 115 ------------QNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM 162

Query: 195 WKVAGVEVGSTVAI 208
              AG   G  V  
Sbjct: 163 --RAGQIEGRIVLE 174

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 78.1 bits (191), Expect = 2e-18
 Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 18/193 (9%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KA       +PL   +I    P   +++I+I    +CHSD+   +  ++      P + G
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVR--SEWAGTVYPCVPG 59

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           HE VG V +VG+ VE+    DLV +      C  C +C+    N C      Y    P +
Sbjct: 60  HEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDE 119

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH-IPLGIACLLSCGVSTGVGAA 194
                             +  +++  VV   +V++I    I +  A  ++      +   
Sbjct: 120 P--------------GHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGD 165

Query: 195 WKVAGVEVGSTVA 207
            K   V    T+ 
Sbjct: 166 VKYRFVIDNRTLT 178

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 76.8 bits (188), Expect = 6e-18
 Identities = 34/80 (42%), Positives = 46/80 (57%)

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
           +CL+ CG +TG GAA   A V  GST A+FGLG VG +   G +   AS+IIGV  + +K
Sbjct: 5   SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDK 64

Query: 240 FEIGKKFGITDFINPATCGD 259
           F    + G T+ +NP     
Sbjct: 65  FPKAIELGATECLNPKDYDK 84

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 76.1 bits (186), Expect = 1e-17
 Identities = 39/84 (46%), Positives = 50/84 (59%)

Query: 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235
           P    CL+ CG STG GAA K   V+ GST  +FGLG VGL+V  G +   AS+IIG+D+
Sbjct: 3   PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL 62

Query: 236 NPEKFEIGKKFGITDFINPATCGD 259
           N +KFE     G T+ I+P     
Sbjct: 63  NKDKFEKAMAVGATECISPKDSTK 86

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 72.7 bits (177), Expect = 2e-16
 Identities = 40/84 (47%), Positives = 49/84 (58%)

Query: 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235
            L   CL+ CG S+G GAA   A V  GST A+FGLG VGL+   G ++  AS+II +DI
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 236 NPEKFEIGKKFGITDFINPATCGD 259
           N EKF   K  G TD +NP     
Sbjct: 62  NGEKFPKAKALGATDCLNPRELDK 85

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 2e-16
 Identities = 31/200 (15%), Positives = 60/200 (30%), Gaps = 27/200 (13%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDV-TFWKSSTDLPKLPLPVIF 75
            + +   PG  L +E   +  P   E+ +++    +C SDV  +         +  P++ 
Sbjct: 9   LSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVL 67

Query: 76  GHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           GHEA G VE VG  V+ +K  D V             CK  + N          P     
Sbjct: 68  GHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDG- 126

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
                               +   +   +     K+  ++   +        +     A+
Sbjct: 127 --------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKAL---EAF 163

Query: 196 KVAGVEVGSTVAIFGLGAVG 215
           +     +G  + +       
Sbjct: 164 ETFKKGLGLKIML-KCDPSD 182

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 72.3 bits (176), Expect = 4e-16
 Identities = 43/198 (21%), Positives = 70/198 (35%), Gaps = 29/198 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWK------SSTDLPKLP 70
           +A      GKPL ++EI V  PK  ++ IK+    +CHSDV   +         +   + 
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 71  LPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRP 130
           LPV  GHE  G +E VG+ V    + DLV     +  G C  C+  + + C         
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLC--------D 113

Query: 131 NMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTG 190
           +    G +                  + EY +V     +     +   I   +    +  
Sbjct: 114 SPRWLGINFDGA--------------YAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 191 VGAAWKVAGVEVGSTVAI 208
                +     +G  V I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.2 bits (173), Expect = 7e-16
 Identities = 45/195 (23%), Positives = 66/195 (33%), Gaps = 28/195 (14%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           KAA+     +PL I+E+E       E+ ++I                    K  LP+I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACG-VCHTDLHAAHGDWPVKPKLPLIPG 60

Query: 77  HEAVGVVESVGEYVEEVKERDLV-LPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRD 135
           HE VG+VE VG  V  +K  D V +P  +  CG C  C S +   C              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQ----------- 109

Query: 136 GTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAW 195
                          +     + EY      +VVKI  +  + +  L    ++       
Sbjct: 110 -----------KNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLE--KINEVFDRML 156

Query: 196 KVAGVEVGSTVAIFG 210
           K  G   G  V    
Sbjct: 157 K--GQINGRVVLTLE 169

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 68.9 bits (167), Expect = 6e-15
 Identities = 43/84 (51%), Positives = 54/84 (64%)

Query: 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235
           PL   CL+ CG STG G+A KVA V  GST A+FGLG VGL+V  G +   A++IIGVDI
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 236 NPEKFEIGKKFGITDFINPATCGD 259
           N +KF   K+ G T+ +NP     
Sbjct: 62  NKDKFAKAKEVGATECVNPQDYKK 85

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 68.4 bits (166), Expect = 7e-15
 Identities = 31/82 (37%), Positives = 43/82 (52%)

Query: 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD 234
           +P+ +   L CG+ TG GA      V   S+   +G GAVGL+    A++  AS II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 235 INPEKFEIGKKFGITDFINPAT 256
           I   + E+ K+ G T  IN  T
Sbjct: 61  IVESRLELAKQLGATHVINSKT 82

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 66.2 bits (160), Expect = 5e-14
 Identities = 38/194 (19%), Positives = 71/194 (36%), Gaps = 24/194 (12%)

Query: 18  AAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLP-LPVIFG 76
           +A+       L +E+  +  PK  E+ +++    +C SDV +++       +   P++ G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HEA G V  VG+ V+ +K+ D V       C  C+ CK  K N C               
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDL------------ 110

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK 196
                           +  +   Y V       K+  +  +      S  +   V  A++
Sbjct: 111 ---------TFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 197 VAGVEVGSTVAIFG 210
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 2e-13
 Identities = 46/84 (54%), Positives = 55/84 (65%)

Query: 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235
           PL   CLL CG+STG GAA   A +E GS  A+FGLG VGLAV  G ++  AS+IIGVDI
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 236 NPEKFEIGKKFGITDFINPATCGD 259
           N +KF   K+FG T+ INP     
Sbjct: 62  NKDKFARAKEFGATECINPQDFSK 85

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 63.9 bits (154), Expect = 4e-13
 Identities = 49/84 (58%), Positives = 55/84 (65%)

Query: 176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI 235
           PL   CLL CGVSTG GAA   A VE GST A+FGLGAVGLA   G     A +II VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 236 NPEKFEIGKKFGITDFINPATCGD 259
           NP+KFE  K FG TDF+NP    +
Sbjct: 62  NPDKFEKAKVFGATDFVNPNDHSE 85

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 62.4 bits (150), Expect = 1e-12
 Identities = 42/194 (21%), Positives = 76/194 (39%), Gaps = 26/194 (13%)

Query: 17  KAAICRIPGKPLVIEEIEV-EPPKAWEIRIKILCTSLCHSDVTFWK-SSTDLPKLPLPVI 74
           KAA      KPL IE+++       +++ ++I    +CH+D+   +    +L +  LP  
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPR 134
            GHE VG +E V E VE +++ D V+       G C  C++ +   C         N+  
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC--------ENLEF 112

Query: 135 DGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAA 194
            G +                  F E+       V+K+   + + +       ++  +   
Sbjct: 113 PGLNIDGG--------------FAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 195 WKVAGVEVGSTVAI 208
            K  G  +G  V I
Sbjct: 159 EK--GEVLGRAVLI 170

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 60.7 bits (146), Expect = 8e-12
 Identities = 27/217 (12%), Positives = 60/217 (27%), Gaps = 30/217 (13%)

Query: 17  KAAICRIPGKPLVIEEIEV-------EPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKL 69
           +  +    GK + +++I+               + +K++ T++C SD    +  T     
Sbjct: 3   RGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 70  PLPVIFGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYR 129
            +        V       E ++      +   +    C  C++  +    T +    G  
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 130 PNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD--ITHVVKITPHIPLGIACLLSCGV 187
                 G                      EY +V     +++K+           ++  V
Sbjct: 122 YGYVDMGDWTG---------------GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVV 166

Query: 188 STGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARL 224
              V +    A    G     F  G     V +  + 
Sbjct: 167 GVQVISLDD-APRGYG----EFDAGVPKKFVIDPHKT 198

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 57.3 bits (137), Expect = 8e-11
 Identities = 35/205 (17%), Positives = 60/205 (29%), Gaps = 35/205 (17%)

Query: 17  KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
           K        K L   E E     +++  ++ L  S C SD+               +I G
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVF--EGALGDRKNMILG 58

Query: 77  HEAVGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDG 136
           HEAVG V  VG  V++ K  D V+           + ++      +    G++ +  +DG
Sbjct: 59  HEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG 118

Query: 137 TSRFRELKGDVIHHFLNISSFTEYSVVDI--THVVKITPHIPLGIACLLSCGVSTGVGAA 194
                               F EY  V+    ++  +   + L            G    
Sbjct: 119 V-------------------FGEYFHVNDADMNLAILPKDVDLSKLVTHVY---HGFDHI 156

Query: 195 WKVAGVEVGSTVAIFGLGAVGLAVA 219
                      + +       L  A
Sbjct: 157 --------EEALLLMKDKPKDLIKA 173

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)

Query: 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD 234
           +PL  A +++  ++TG   A ++A +E+GS+V + G+GAVGL    GA+L  A +IIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 235 INPEKFEIGKKFGITDFINP 254
             P   E  K +G TD +N 
Sbjct: 60  SRPICVEAAKFYGATDILNY 79

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 44.8 bits (105), Expect = 9e-07
 Identities = 9/63 (14%), Positives = 22/63 (34%)

Query: 17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFG 76
          KA + +  G PL + ++     +  E+ +++    L  +D      +      P  +   
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGM 61

Query: 77 HEA 79
             
Sbjct: 62 EVV 64

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 44.8 bits (105), Expect = 2e-06
 Identities = 29/75 (38%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 180 ACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK 239
              LS  + TG   A   AGV  GSTV + G G VGLA A  ARL  A+ +I  D+NP +
Sbjct: 4   LTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 240 FEIGKKFGITDFINP 254
               K  G       
Sbjct: 63  LAHAKAQGFEIADLS 77

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 177 LGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVG 215
           L +  +  C  +T   A  +      G TV I G G +G
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLG 41

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 183 LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI 242
           LS G+      A +  GV +G  V + G G +G+     A+   A++++  D++  +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 243 GKKFGITDFINPATC 257
            K+ G    +  +  
Sbjct: 67  AKEIGADLVLQISKE 81

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 37.1 bits (84), Expect = 9e-04
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 13 VIRCKAAICRIPGKP---LVIEEIEVEPP--KAWEIRIKILCTSLCHSDVTFW 60
          +I  +A +    G+P   L  +  E++       E+ +K L + +  SD+   
Sbjct: 1  MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQI 53

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD 234
           IP  +A  L CG  T V +     G   G  V I GLG +G      ++    ++   + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 235 INPEKFEIGKKFGITDFINPATCGD 259
            +  K E   K G   +I     GD
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGD 83

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)

Query: 206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE 241
           +A+ G G VGL++     L+  +++  VDI P K +
Sbjct: 3   IAVAGSGYVGLSLG--VLLSLQNEVTIVDILPSKVD 36

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 11/94 (11%), Positives = 30/94 (31%), Gaps = 5/94 (5%)

Query: 17  KAAICRIPGKPLV--IEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVI 74
           +A +           ++ I ++     ++ +++  +S+ + D     +S    K+     
Sbjct: 5   QAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKD---GLASIPDGKIVKTYP 61

Query: 75  FGHEAVGVVESVGEYVEEVKERDLVLPIFHRDCG 108
           F          V       +E D V+   +    
Sbjct: 62  FVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGV 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	267
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	100.0
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.94
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.68
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.68
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.66
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.65
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.65
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.64
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.62
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.62
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.6
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.59
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.57
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.57
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.57
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.56
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.54
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.52
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.52
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.51
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.5
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.48
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.47
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.47
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.43
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.4
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.38
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.38
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.16
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.21
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.94
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.66
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.49
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	96.4
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.32
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.18
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	95.94
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.93
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.91
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.82
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.78
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.72
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	95.71
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.7
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.62
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.6
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.58
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.41
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.35
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.34
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.34
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	95.32
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.31
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.29
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.28
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.27
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.23
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.23
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.2
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	95.15
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.13
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.07
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.06
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.01
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.01
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	94.98
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.97
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.93
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	94.93
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.9
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	94.88
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.86
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.86
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	94.85
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	94.77
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.76
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	94.75
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	94.7
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.69
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	94.61
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.61
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.59
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.59
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.54
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	94.4
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.4
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	94.21
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	93.97
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	93.96
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	93.95
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.84
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.77
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.77
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.7
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.66
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.53
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.46
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.46
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	93.45
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.4
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	93.37
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.26
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.25
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.22
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.13
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	93.11
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.07
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.05
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	92.95
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.91
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.89
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	92.88
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.86
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.83
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	92.69
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.57
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.57
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.56
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	92.43
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.37
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	92.11
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.8
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	91.69
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	91.65
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.54
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.5
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	91.41
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.36
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.33
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.32
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	91.31
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.29
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.2
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.06
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.95
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	90.91
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.91
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	90.89
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	90.71
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	90.69
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.67
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	90.65
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.6
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.5
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	90.47
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.46
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	90.31
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.19
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.14
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	90.07
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.91
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	89.88
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.81
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	89.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.74
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.7
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	89.69
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.6
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.6
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	89.53
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	89.25
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	89.21
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	89.18
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	89.13
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.06
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	88.97
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.88
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	88.85
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	88.62
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.59
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.58
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	88.52
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	88.41
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	88.37
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	88.37
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	88.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	88.2
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.18
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	88.13
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.05
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.01
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	87.92
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.91
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.9
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	87.86
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.85
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	87.82
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	87.78
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.76
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.72
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.59
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	87.58
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	87.54
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	87.53
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	87.52
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.49
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.48
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	87.43
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	87.23
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	87.15
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.15
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	86.98
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	86.94
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	86.84
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	86.76
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.75
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.61
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	86.47
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	86.32
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	86.07
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.72
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	85.64
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.53
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	85.39
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	85.26
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.25
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	85.21
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	85.18
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	85.17
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	85.07
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.0
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	84.93
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.88
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	84.72
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	84.72
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.35
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	84.13
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	84.04
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.99
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	83.88
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	83.87
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	83.83
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.38
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	83.2
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.17
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	83.14
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	83.07
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	83.05
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	83.02
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	82.93
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	82.72
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.54
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	82.51
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	82.46
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	82.41
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	82.32
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.1
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.05
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.97
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	81.95
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	81.63
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	81.59
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	81.37
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.29
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	80.81
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	80.62
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.53
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	80.3
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	80.25
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	80.1

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=2.2e-40  Score=277.25  Aligned_cols=198  Identities=39%  Similarity=0.598  Sum_probs=181.0

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |-+++|++||++++++++|+++++++.|.|+++||||||.++|||++|++.+.+.....  .+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~--~~p~i~GhE~~G~v~~vG~   79 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKD--GFPVVLGHEGAGIVESVGP   79 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTT--SCSEECCCCEEEEEEEECT
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhccccc--ccccccccccceEEEEEcC
Confidence            55789999999999999999999999999999999999999999999999999977665  7899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccce
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHV  168 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  168 (267)
                      ++++|++||||++.+...|+.|++|+.+++++|.+.......+...+|..+. .++|....++++.|+|+||++++++++
T Consensus        80 ~v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~Ggfaey~~v~~~~~  158 (199)
T d1cdoa1          80 GVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAV  158 (199)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCE-EETTEEEEEGGGTCCSBSEEEEEGGGE
T ss_pred             CCceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccce-eeccceeecccccCCceEEEEEchHHE
Confidence            9999999999999999999999999999999999988777677766665444 556667777777899999999999999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      +++|+++++++++++.+++.|+++++......+.|++|||+
T Consensus       159 ~~iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         159 AKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             EECCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999999998888889999999985

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=3.2e-38  Score=263.54  Aligned_cols=196  Identities=40%  Similarity=0.615  Sum_probs=173.5

Q ss_pred             CccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           11 GKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        11 ~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      +.+|+|||++++++++|++++++|.|+|+++||||||+++|||++|++++.|.+...  .+|+++|||++|+|+++|++|
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~--~~p~v~GhE~~G~V~~vG~~V   79 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEG--CFPVILGHLGAGIVESVGEGV   79 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTC--CSSBCCCCEEEEEEEEECTTC
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccc--cccccCCcceeeEEEeecCCc
Confidence            457899999999999999999999999999999999999999999999999987655  789999999999999999999


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +++++||||++.+..+|+.|.+|+.+.++.|.+.......+...+.+.++ .+.|..+.+|.+.|+|+||+++|+.++++
T Consensus        80 ~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~g~GgfAey~vvp~~~~~~  158 (197)
T d2fzwa1          80 TKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAK  158 (197)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             eecCCCCEEEEccccccccccccccCccccCccccccccccccCCcccee-ccCCcceecccccccceeEEEechHHEEE
Confidence            99999999999999999999999999999998876655556666654443 34566677788889999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      +|+++++++++.+.+++.+++.++.+...-+.+++|+|+
T Consensus       159 vp~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         159 IDPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CCTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            999999999999999999999976555556678888885

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=1.1e-37  Score=261.13  Aligned_cols=195  Identities=36%  Similarity=0.602  Sum_probs=166.5

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |..++|+|||++++++++|++++++|.|+|+++||||||.++|||++|++.+.|.++.   .+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~---~~P~v~GHE~~G~V~~vG~   78 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA---LFPVVLGHECAGIVESVGP   78 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC---CSSBCCCCEEEEEEEEECT
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc---ccccccccccceEEeeecC
Confidence            5678999999999999999999999999999999999999999999999999998764   5899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCC----CCCCCCccccccCCceecccccccceeeeEEee
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPN----MPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD  164 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g----~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~  164 (267)
                      +|++|++||||++.+...|+.|++|+.|++++|.+........    ...++..+ ..+.|....++.+.|+|+||++++
T Consensus        79 ~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~~~G~faey~~v~  157 (202)
T d1e3ia1          79 GVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSR-FTCKGRSIYHFMGVSSFSQYTVVS  157 (202)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCS-EEETTEEEBCCTTTCCSBSEEEEE
T ss_pred             CceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccc-cccCceeeecccccCCceEEEEEe
Confidence            9999999999999999999999999999999998766421111    11112111 145566777788889999999999


Q ss_pred             ccceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEc
Q 024496          165 ITHVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG  210 (267)
Q Consensus       165 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G  210 (267)
                      +++++++|++++++.++++.+++.+.++++.   .+++|++|.|+.
T Consensus       158 ~~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~---~~k~G~~V~vi~  200 (202)
T d1e3ia1         158 EANLARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL  200 (202)
T ss_dssp             GGGEEECCTTSCGGGGEEEEEEGGGHHHHHH---HHHTTCCSEEEE
T ss_pred             hhhEEECCCCCCHHHHHHHHHHHHHHHHHHH---hCCCCCEEEEEE
Confidence            9999999999999998888888888887643   257899988763

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=8.1e-38  Score=260.47  Aligned_cols=192  Identities=24%  Similarity=0.497  Sum_probs=161.1

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcc
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEE   92 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   92 (267)
                      +++|+|+++.+.++||+++++|.|+|+++|||||+.+++||++|++.+.|.++.   ++|.++|||++|+|+++|+++++
T Consensus         1 ~k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~---~~P~i~GHE~~G~V~~vG~~v~~   77 (194)
T d1f8fa1           1 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV---PLPAVLGHEGSGIIEAIGPNVTE   77 (194)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC---CSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc---cCCcccccceEEEeeecCcccee
Confidence            468999999999999999999999999999999999999999999999998764   58999999999999999999999


Q ss_pred             cCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCcccc-ccCCceecccccccceeeeEEeeccceEEc
Q 024496           93 VKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFR-ELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        93 ~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~-~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      |++||||+..+ .+|++|++|+++++++|++.......|...+|...+- ...+....++.+.|+|+||.+++..+++++
T Consensus        78 ~~vGDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~i  156 (194)
T d1f8fa1          78 LQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKV  156 (194)
T ss_dssp             CCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEE
T ss_pred             EccCceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEEC
Confidence            99999996654 5899999999999999988644333555555543332 223344556777789999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGV  233 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~  233 (267)
                      |++++++++                         ++|.|+|++|++++|+++.+|+.+|+++
T Consensus       157 p~~i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         157 TKDFPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CTTCCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            999887644                         4456889999999999999999777765

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=4.3e-37  Score=256.89  Aligned_cols=194  Identities=43%  Similarity=0.654  Sum_probs=167.4

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |..+..||||++++++++|++++++|.|+|+++||||||.+++||++|++++.|.++.   .+|.++|||++|+|+++|+
T Consensus         2 ~~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~---~~P~i~GHE~~G~Vv~~G~   78 (198)
T d1p0fa1           2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS---KFPVILGHEAVGVVESIGA   78 (198)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC---CSSBCCCCCEEEEEEEECT
T ss_pred             CCCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc---ccccccceeeeeeeeecCc
Confidence            4578889999999999999999999999999999999999999999999999988764   6899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccce
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHV  168 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  168 (267)
                      ++++|++||||++.+..+|+.|++|+++.+++|+........|...++..++ .+.+..++.+...|+|+||..+++.++
T Consensus        79 ~v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~g~faey~~v~~~~~  157 (198)
T d1p0fa1          79 GVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAV  157 (198)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSE-EETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             ccccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeE-eeCCeeccccCCCccceeeEEecHHHE
Confidence            9999999999999999999999999999999999888766566666665544 566777777777899999999999999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHH
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGL  216 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~  216 (267)
                      +++|+++++..++...+.+.+..          ++++|+|.|+|++|+
T Consensus       158 ~kip~~~~~~~~~~~~~~~~~v~----------~~~~vlv~G~G~iGl  195 (198)
T d1p0fa1         158 AKIDPKINVNFLVSTKLTLDQIN----------KAFELLSSGQGVRSI  195 (198)
T ss_dssp             EEECTTSCGGGGEEEEECGGGHH----------HHHHHTTTSSCSEEE
T ss_pred             EECCCCCCHHHHHHhhcchhhcC----------CCCEEEEECCCcceE
Confidence            99999999887776655554332          233477778887765

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=4.2e-36  Score=250.79  Aligned_cols=194  Identities=42%  Similarity=0.665  Sum_probs=168.2

Q ss_pred             CcCccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496            9 KAGKVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus         9 ~~~~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      |..+.++|||++++++++|+++++++.|+|+++||||||.++|||++|++.+.|.++.   ++|.++|||++|+|+++|+
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~---~~P~i~GHE~~G~Vv~vG~   78 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGE   78 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---CSSBCCCCSEEEEEEEECT
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc---ccceecccceeEEEEecCc
Confidence            5678999999999999999999999999999999999999999999999999998765   5899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccce
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHV  168 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~  168 (267)
                      +++++++||||++.+..+|+.|.+|+.+.++.|......++.+...++..++ .+++...+++++.|+|+||+++|..++
T Consensus        79 ~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~G~fAEy~~v~~~~~  157 (198)
T d2jhfa1          79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISV  157 (198)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSE-EETTEEEBCSTTTCCSBSEEEEEGGGE
T ss_pred             cccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccc-cccCceeccCCCCCcccCeEEeCHHHe
Confidence            9999999999999999999999999999999999988876666665553333 667777888888899999999999999


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      +++|++++++.++...+++.....+   ...+++|++|+|+
T Consensus       158 ~~~p~~~~~e~l~~~~~~~~~v~~g---~~~l~~G~~VaVi  195 (198)
T d2jhfa1         158 AKIDAAFALDPLITHVLPFEKINEG---FDLLRSGESIRTI  195 (198)
T ss_dssp             EECCTTSCCGGGEEEEEEGGGHHHH---HHHHHTTCCSEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHhhhhC---CceeeCCCEEEEE
Confidence            9999998887766655455443332   2336789998886

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.8e-36  Score=248.19  Aligned_cols=173  Identities=28%  Similarity=0.398  Sum_probs=154.8

Q ss_pred             ccccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           12 KVIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .|.+|||++++++++|++++++|.|.|+++||||||.+++||++|++.+.|.++... .+|.++|||++|+|+++|++++
T Consensus         2 ~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~-~~P~i~GhE~~G~V~~~G~~v~   80 (175)
T d1llua1           2 LPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKP-PLPFIPGHEGVGYVAAVGSGVT   80 (175)
T ss_dssp             CCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCC-CSSBCCCSCEEEEEEEECTTCC
T ss_pred             cchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccc-cCCcCCCCcceEEEEEeCCCcc
Confidence            588999999999999999999999999999999999999999999999999876442 7899999999999999999999


Q ss_pred             ccCCCCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           92 EVKERDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        92 ~~~~Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +|++||||+..+ ...|+.|.+|+.++++.|.+...   .|+..+|                   +|+||++++++++++
T Consensus        81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~  138 (175)
T d1llua1          81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGI  138 (175)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEE
T ss_pred             ccccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEE
Confidence            999999998765 45799999999999999988765   6666666                   899999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      +|++++++.++++.+.+.++++++ + .+..+|++|||+
T Consensus       139 iPd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         139 LPKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CCTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            999999988888888888888853 3 445579999985

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=1.1e-36  Score=250.06  Aligned_cols=172  Identities=23%  Similarity=0.345  Sum_probs=151.1

Q ss_pred             eeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           17 KAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        17 ~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      .+++++++++ ++++++|.|+|+++|||||+++++||++|++.+.+.... ...+.|+++|||++|+|+++|+++++|++
T Consensus         3 maAVl~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~~   81 (178)
T d1e3ja1           3 LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLKK   81 (178)
T ss_dssp             EEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCCT
T ss_pred             eEEEEEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCCC
Confidence            3445677777 999999999999999999999999999999988865432 22367899999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||||++.+..+|+.|++|+.++.++|++....  .+...+                   |+|+||+++|+++++++|+++
T Consensus        82 GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~-------------------G~~aey~~v~~~~~~~iP~~~  140 (178)
T d1e3ja1          82 GDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDD-------------------GNLARYYVHAADFCHKLPDNC  140 (178)
T ss_dssp             TCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBC-------------------CSCBSEEEEEGGGEEECCTTC
T ss_pred             CCEEEECcccccCCccccccCCccccccccce--eccccc-------------------cccceeeeecccceeeCCCCC
Confidence            99999999999999999999999999887653  222233                   499999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL  211 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~  211 (267)
                      ++++++.+.+.+.|+|++ ++.+++++|++|+|+|+
T Consensus       141 ~~~~aa~~~~~~~ta~~a-~~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         141 NVKQLVTHSFKLEQTVDA-FEAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCGGGEEEEEEGGGHHHH-HHHHHHCCTTCSEEEEE
T ss_pred             CHHHHHHHHhHHHHHHHH-HHHhCCCCCCEEEEEcc
Confidence            999999999999999996 57899999999999974

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=1e-35  Score=242.97  Aligned_cols=168  Identities=24%  Similarity=0.398  Sum_probs=152.0

Q ss_pred             eeEEeecCCCCeEEEEeecCCC-CCCeEEEEEeeeeCChhhHHhHhcCCCCC-CCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGKPLVIEEIEVEPP-KAWEIRIKILCTSLCHSDVTFWKSSTDLP-KLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~-~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      ||++++++++|+++++++.|++ +++|||||+.+++||++|++.+.|.++.. ...+|+++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 68999999999999999999998876421 126899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||||++.+...|+.|+.|+.+.+++|.+...   .|+..+|                   +|+||++++.++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999988775   5666666                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEE
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAI  208 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI  208 (267)
                      ++++.++++.++++|+|+++ +..++ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99988888888999999975 56777 8999998

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-35  Score=242.24  Aligned_cols=172  Identities=19%  Similarity=0.289  Sum_probs=147.8

Q ss_pred             cceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC-CCCCCCcccceeeEEEEEEecCCCccc
Q 024496           15 RCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL-PKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        15 ~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      +++|++++.+++ ++++++|.|+|+++||||||.+++||++|++.+.+.... ...++|+++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            678999999987 999999999999999999999999999999998764321 112678999999999999999999999


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeeccceEEcC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMP-RDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKIT  172 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP  172 (267)
                      ++||||++.+...|+.|++|+.|++++|....+   .|.. .+                   |+|+||++++.++++++|
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~-------------------G~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEECC
T ss_pred             cccccceecceeccccchhhccchhchhcccee---eeccccc-------------------ccceEEEEEchHHEEECC
Confidence            999999999999999999999999999988765   2322 23                   489999999999999999


Q ss_pred             CCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCH
Q 024496          173 PHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGA  213 (267)
Q Consensus       173 ~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~  213 (267)
                      ++++++++++++  +++++++ ++..++++|++||| |+|+
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            999999987654  4567774 56778999999998 6553

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-34  Score=240.68  Aligned_cols=180  Identities=22%  Similarity=0.272  Sum_probs=150.6

Q ss_pred             ccccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCC
Q 024496           12 KVIRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        12 ~~~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      .|.+|||+++..+++.  +++.+++.++++++||||||.++|||++|++.+.|.++..  ++|+++|||++|+|+++|++
T Consensus         3 ~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~--~~P~i~GHE~~G~Vv~vG~~   80 (192)
T d1piwa1           3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNM--KMPLVVGHEIVGKVVKLGPK   80 (192)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCC--CSSEECCCCEEEEEEEECTT
T ss_pred             CCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCC--CCCcCcccccccchhhcccc
Confidence            5789999999888765  6777777666799999999999999999999999987765  78999999999999999999


Q ss_pred             C-cccCCCCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc
Q 024496           90 V-EEVKERDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH  167 (267)
Q Consensus        90 v-~~~~~Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~  167 (267)
                      + +.+++||||.+.+. ..|+.|.+|+.+++++|++....+. +...+|              +...|+|+||++++.++
T Consensus        81 v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~-~~~~~G--------------~~~~Ggfaey~~v~~~~  145 (192)
T d1piwa1          81 SNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS-QPYEDG--------------YVSQGGYANYVRVHEHF  145 (192)
T ss_dssp             CCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSS-CBCTTS--------------CBCCCSSBSEEEEEGGG
T ss_pred             cccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccc-cccccc--------------cccccceeeEEEeehHH
Confidence            8 56999999987664 5799999999999999988765321 111112              11225999999999999


Q ss_pred             eEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          168 VVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       168 ~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      ++++|+++++++|+.+.+.+.+||+++ +.++++++++|+|.
T Consensus       146 ~~~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         146 VVPIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             EEECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             eEECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            999999999988877765678999965 68999999999985

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.8e-34  Score=237.97  Aligned_cols=175  Identities=26%  Similarity=0.362  Sum_probs=144.7

Q ss_pred             cccceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc-
Q 024496           13 VIRCKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE-   91 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~-   91 (267)
                      +++|||++++++++|+++++++.|+|+++||||||.++|||++|++.+.|.++..  ++|+++|||++|+|+++|++|+ 
T Consensus         2 ~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~--~~P~vlGHE~~G~V~~vG~~v~~   79 (184)
T d1vj0a1           2 GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRV--PLPIILGHEGAGRVVEVNGEKRD   79 (184)
T ss_dssp             CEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTC--CSSBCCCCEEEEEEEEESSCCBC
T ss_pred             CceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCcc--ccccccceeeeeeeeEEeccccc
Confidence            5789999999999999999999999999999999999999999999999988755  7999999999999999999986 


Q ss_pred             ----ccCCCCEEEeeccCCCCCCcccccCCCC-CCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-c
Q 024496           92 ----EVKERDLVLPIFHRDCGECRDCKSSKSN-TCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVD-I  165 (267)
Q Consensus        92 ----~~~~Gd~V~~~~~~~~~~c~~c~~~~~~-~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~-~  165 (267)
                          ++++||+|++.+..+|+.|++|+.|++. .|++...   .|+...- ..          ...-.|+|+||++++ .
T Consensus        80 ~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~-~~----------~~~~~Gg~ae~~~v~~~  145 (184)
T d1vj0a1          80 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-SE----------YPHLRGCYSSHIVLDPE  145 (184)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-SS----------TTCCCSSSBSEEEECTT
T ss_pred             cccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC-CC----------CCCcceeCcCcEEechh
Confidence                4689999999999999999999999975 4766543   3322110 00          001125999999996 5


Q ss_pred             cceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEc
Q 024496          166 THVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG  210 (267)
Q Consensus       166 ~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G  210 (267)
                      ++++++|+++++++      ++++|+++ .+.+++++|++|||+.
T Consensus       146 ~~v~~ip~~l~~~~------pl~~A~~a-~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         146 TDVLKVSEKITHRL------PLKEANKA-LELMESREALKVILYP  183 (184)
T ss_dssp             CCEEEECTTCCEEE------EGGGHHHH-HHHHHHTSCSCEEEEC
T ss_pred             HcEEECCCCCCHHH------HHHHHHHH-HHHhCCCcCCEEEEee
Confidence            79999999998753      34567775 4778999999999973

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=6.5e-36  Score=245.35  Aligned_cols=170  Identities=20%  Similarity=0.168  Sum_probs=142.1

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||+++.++++ ++++++|.|.|+++|||||+++++||++|++.+.+.....  .+|+++|||++|+|+++|+++++|++
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~--~~P~i~GhE~~G~V~~vG~~v~~~~v   77 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGD--RKNMILGHEAVGEVVEVGSEVKDFKP   77 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCC--CSSEECCCCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCC--CCCccCcceeeEEeeecccccceecC
Confidence            89999999998 9999999999999999999999999999998887655544  68999999999999999999999999


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec--cceEEcCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI--THVVKITP  173 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~--~~~~~iP~  173 (267)
                      ||||++.+..+|+.|++|+++.+++|.....+...|...+|                   +|+||+++|.  .+++++|+
T Consensus        78 GdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~  138 (177)
T d1jqba1          78 GDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPK  138 (177)
T ss_dssp             TCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCT
T ss_pred             CCcEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCC
Confidence            99999999999999999999999999887654445545555                   9999999985  47999999


Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHH
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAV  218 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a  218 (267)
                      ++++++++.....   ++.++        ++.++|+|+|++|+++
T Consensus       139 ~~~~~~~~~~~~~---~~~~~--------~~~vlv~g~gp~gl~a  172 (177)
T d1jqba1         139 DVDLSKLVTHVYH---GFDHI--------EEALLLMKDKPKDLIK  172 (177)
T ss_dssp             TSCGGGGEEEEEE---SGGGH--------HHHHHHHHHCCTTCSE
T ss_pred             CcchHHHHHHHHH---HHHHh--------cCceEEECCCHHHhhe
Confidence            9999887654322   22212        2336777777777654

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=1.1e-33  Score=231.84  Aligned_cols=169  Identities=27%  Similarity=0.394  Sum_probs=143.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCC------CCCCCCcccceeeEEEEEEecCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDL------PKLPLPVIFGHEAVGVVESVGEY   89 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~------~~~~~p~~~G~e~~G~V~~vG~~   89 (267)
                      |||++++++|+|+++++++.|+|+++|||||+.+++||++|++.+.|.++.      ...++|+++|||++|+|+++|+.
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            899999999999999999999999999999999999999999999886531      11268999999999999999999


Q ss_pred             CcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccc-e
Q 024496           90 VEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITH-V  168 (267)
Q Consensus        90 v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~-~  168 (267)
                      +++|++||||++.+...|+.|.+|+.++++.|++...   .|+..+|                   +|+||++++..+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999988765   5666666                   999999997655 5


Q ss_pred             EEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEE
Q 024496          169 VKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAI  208 (267)
Q Consensus       169 ~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI  208 (267)
                      +++|+..+.+.|+.+..++.++++++ ..+++ .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            56665555544544456888888854 56666 5899998

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=2.1e-33  Score=228.84  Aligned_cols=169  Identities=27%  Similarity=0.396  Sum_probs=145.1

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||++++++++|++++++|.|.|++|||||||++++||++|++.+.+...... .+|.++|||++|+|+++|+.++++++
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~-~~p~v~GhE~~G~Vv~vG~~v~~~~v   79 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKP-KLPLIPGHEGVGIVEEVGPGVTHLKV   79 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCC-CSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeeccccccc-ccccccCCEEEEEEEEecccccCcee
Confidence            89999999999999999999999999999999999999999998887654432 78999999999999999999999999


Q ss_pred             CCEEEeecc-CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIFH-RDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||||++.+. ..|+.|..|..+.+++|.....   .|...+|                   +|+||++++.++++++|++
T Consensus        80 GdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  137 (171)
T d1rjwa1          80 GDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDN  137 (171)
T ss_dssp             TCEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTT
T ss_pred             eeEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCC
Confidence            999987654 5689999999999999988765   5666665                   9999999999999999999


Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL  211 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~  211 (267)
                      ++++.|++ . .+.++++++. ...+ +|++|||+|.
T Consensus       138 ~~~e~A~l-~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         138 TIIEVQPL-E-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CCEEEEEG-G-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CCHHHHHH-H-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            99876654 4 4556776543 3445 5999999984

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=3.4e-36  Score=251.85  Aligned_cols=191  Identities=21%  Similarity=0.276  Sum_probs=151.7

Q ss_pred             ceeEEeecCCCCeEEEEeecCCC-------CCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPP-------KAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGE   88 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~   88 (267)
                      +||++++.+++ ++++++|.|++       .++||||||.+++||++|++.+.|.++.   .+|+++|||++|+|+++|+
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~---~~P~v~GHE~~G~Vv~vG~   77 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA---QVGLVLGHEITGEVIEKGR   77 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC---CTTCBCCCCEEEEEEEECT
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc---ccceeccceeeeeeecccc
Confidence            68999999998 99999999865       4599999999999999999999998764   5899999999999999999


Q ss_pred             CCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec--c
Q 024496           89 YVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDI--T  166 (267)
Q Consensus        89 ~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~--~  166 (267)
                      +|++|++||||++.+..+|+.|++|+++++++|.........+.....  ....+          .|+|+||+++|.  .
T Consensus        78 ~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~--~~~~~----------~Gg~aeyv~vp~~~~  145 (201)
T d1kola1          78 DVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV--DMGDW----------TGGQAEYVLVPYADF  145 (201)
T ss_dssp             TCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT--TSCCB----------CCCSBSEEEESSHHH
T ss_pred             ccccccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc--CCCcc----------ccccccEEEeehHHC
Confidence            999999999999999999999999999999999765432211111100  00011          259999999985  3


Q ss_pred             ceEEcCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC
Q 024496          167 HVVKITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA  227 (267)
Q Consensus       167 ~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~  227 (267)
                      ++++|||+....+++.+...++++++++ .....+.+    ++|+|++|++++|+||++|+
T Consensus       146 ~l~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         146 NLLKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HCEECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             eEEECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            7999999876666666666777776643 23333333    25889999999999999885

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-33  Score=227.61  Aligned_cols=160  Identities=24%  Similarity=0.340  Sum_probs=131.9

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||++.+.+++||+++++|.|+|+++||||||.+++||++|++.+.|.++..  .+|+++|||++|+|+++|++|++|++
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~--~~P~i~GhE~~G~V~~vG~~V~~~~v   78 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGT--VYPCVPGHEIVGRVVAVGDQVEKYAP   78 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCC--CSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccc--cccccccccccccchhhccccccCCC
Confidence            8999999999999999999999999999999999999999999999987765  78999999999999999999999999


Q ss_pred             CCEEEeec-cCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           96 RDLVLPIF-HRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        96 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      ||+|.+.+ ...|++|++|+.|++++|++....+.......+.              ...|+|+||+++|+++++++|++
T Consensus        79 GdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~--------------~~~GgfaEy~~v~~~~~~~ip~~  144 (179)
T d1uufa1          79 GDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG--------------HTLGGYSQQIVVHERYVLRIRVA  144 (179)
T ss_dssp             TCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTS--------------BCCCSSBSEEEEEGGGCEECCCC
T ss_pred             CCEEEEcccccccCccccccCcccccCCCccccccccCCCCCc--------------ccccccceEEEechHHEEECCCC
Confidence            99997765 4689999999999999999866433222211110              11259999999999999999966


Q ss_pred             CChhhhhhcchhhhhHHHHH
Q 024496          175 IPLGIACLLSCGVSTGVGAA  194 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~  194 (267)
                      .....++   .++.++++++
T Consensus       145 ~~~~~~a---~~l~~a~~a~  161 (179)
T d1uufa1         145 DIEMIRA---DQINEAYERM  161 (179)
T ss_dssp             CEEEECG---GGHHHHHHHH
T ss_pred             CcChhHh---chhHHHHHHH
Confidence            5332222   2556777754

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8e-30  Score=203.46  Aligned_cols=146  Identities=18%  Similarity=0.234  Sum_probs=131.0

Q ss_pred             cceeEEeecCCCC--eEEE-EeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           15 RCKAAICRIPGKP--LVIE-EIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        15 ~~~a~~~~~~~~~--~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .|||++++++++|  ++++ ++|.|+|++|||||||.+++||++|.+.+.|.++... .+|.++|||++|+|+++|++++
T Consensus         2 ~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~-~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           2 LMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKP-LLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             EEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCC-CSSBCCCSCEEEEEEEECTTCT
T ss_pred             ceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccc-cccccCccceeeeeEeecceee
Confidence            5899999998887  7774 6899999999999999999999999999999877643 7899999999999999999999


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      +|++||||+....                             .+                   |+|+||+.++.++++++
T Consensus        81 ~~~vGdrV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~i  112 (150)
T d1yb5a1          81 AFKKGDRVFTSST-----------------------------IS-------------------GGYAEYALAADHTVYKL  112 (150)
T ss_dssp             TCCTTCEEEESCC-----------------------------SS-------------------CSSBSEEEEEGGGEEEC
T ss_pred             ccccCcccccccc-----------------------------cc-------------------ccccccccccccccccc
Confidence            9999999975322                             12                   49999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      |+++++++|+++++...++|+++........|+++||+
T Consensus       113 P~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         113 PEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             CTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             cCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            99999999999999999999988888899999999984

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=3.3e-28  Score=194.39  Aligned_cols=150  Identities=15%  Similarity=0.140  Sum_probs=126.7

Q ss_pred             cccceeEEeecCCCCe--EEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCC
Q 024496           13 VIRCKAAICRIPGKPL--VIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYV   90 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~~--~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v   90 (267)
                      |.+|||+++.++++++  ++++++.|+|++|||||||.+++||++|++.+.|.++... ..|+++|||++|+|++  ..+
T Consensus         1 m~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~-~~p~v~g~e~~G~v~~--~~~   77 (152)
T d1xa0a1           1 MSAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVK-TYPFVPGIDLAGVVVS--SQH   77 (152)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCC-SSSBCCCSEEEEEEEE--CCS
T ss_pred             CCceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccc-cccceeeeeeeeeeec--cCC
Confidence            4689999999999874  5789999999999999999999999999999988776543 7899999999999999  556


Q ss_pred             cccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEE
Q 024496           91 EEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVK  170 (267)
Q Consensus        91 ~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~  170 (267)
                      +.|++||+|+....                        +.+...+                   |+|+||+++|++++++
T Consensus        78 ~~~~~g~~v~~~~~------------------------~~~~~~~-------------------G~~aEy~~v~~~~~~~  114 (152)
T d1xa0a1          78 PRFREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVP  114 (152)
T ss_dssp             SSCCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEE
T ss_pred             CccccCCEEEEecC------------------------ccccccC-------------------CCcceeeeehhhcccc
Confidence            78999999976432                        1222333                   4999999999999999


Q ss_pred             cCCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEc
Q 024496          171 ITPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFG  210 (267)
Q Consensus       171 iP~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G  210 (267)
                      +|+++++ +|++++++..|++.++....+++ |++|||+|
T Consensus       115 iP~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         115 LPKGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             CCTTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            9999984 68888888888888787778876 99999975

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.5e-27  Score=189.49  Aligned_cols=141  Identities=19%  Similarity=0.200  Sum_probs=121.8

Q ss_pred             eeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccC
Q 024496           17 KAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVK   94 (267)
Q Consensus        17 ~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~   94 (267)
                      +.++++++|+|  +++++++.|.|+++||||||++++||++|++.+.|.++..  .+|.++|||++|+|+++|+++++|+
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~--~~p~~~G~e~~G~V~~vG~~v~~~~   79 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPP--SLPSGLGTEAAGIVSKVGSGVKHIK   79 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCS--SSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCC--cceeeeccccccceeeeeeeccccc
Confidence            46788889988  8999999999999999999999999999999999998765  7899999999999999999999999


Q ss_pred             CCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCC
Q 024496           95 ERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPH  174 (267)
Q Consensus        95 ~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~  174 (267)
                      +||||+....                             ..                   |+|+||++++.+.++++|++
T Consensus        80 vGdrV~~~~~-----------------------------~~-------------------G~~ae~~~v~~~~~~~~P~~  111 (147)
T d1qora1          80 AGDRVVYAQS-----------------------------AL-------------------GAYSSVHNIIADKAAILPAA  111 (147)
T ss_dssp             TTCEEEESCC-----------------------------SS-------------------CCSBSEEEEEGGGEEECCTT
T ss_pred             ccceeeeecc-----------------------------cc-------------------ccceeEEEEehHHeEEcCcc
Confidence            9999964211                             11                   48999999999999999999


Q ss_pred             CChhhh--hhcchhhhhHHHHHHHHhCCCCCCEEEE
Q 024496          175 IPLGIA--CLLSCGVSTGVGAAWKVAGVEVGSTVAI  208 (267)
Q Consensus       175 ~~~~~a--a~l~~~~~ta~~a~~~~~~~~~g~~VlI  208 (267)
                      ++++++  +.+++..++++++++ ..++++|++|||
T Consensus       112 ~~~~~a~a~~~~~~~~~~~~~l~-~~~~~~G~~VLI  146 (147)
T d1qora1         112 IKVDVAEQQKYPLKDAQRAHEIL-ESRATQGSSLLI  146 (147)
T ss_dssp             SCCCCCGGGEEEGGGHHHHHHHH-HTTCCCBCCEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHH-HhCCCCCCEEEe
Confidence            887654  445667777777665 468999999998

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=1.3e-27  Score=186.28  Aligned_cols=131  Identities=18%  Similarity=0.170  Sum_probs=116.8

Q ss_pred             ceeEEeecCCCCeEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCcccCC
Q 024496           16 CKAAICRIPGKPLVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEVKE   95 (267)
Q Consensus        16 ~~a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~   95 (267)
                      |||++++++++++++++++.|.|+++|||||+++++||++|++.+.|.+.... .+|+++|||++|+|           +
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~-~~P~v~G~E~~G~V-----------v   68 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRL-HPPFIPGMEVVGVV-----------E   68 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCC-CSSBCCCCEEEEEE-----------T
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccc-cceeEeeeeeEEee-----------c
Confidence            89999999999999999999999999999999999999999999999876543 78999999999999           3


Q ss_pred             CCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCCCC
Q 024496           96 RDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITPHI  175 (267)
Q Consensus        96 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~~~  175 (267)
                      ||+|.....                              +                   |+|+||+.++.++++++|+++
T Consensus        69 Gd~V~~~~~------------------------------~-------------------G~~aey~~v~~~~~~~~P~~~   99 (131)
T d1iz0a1          69 GRRYAALVP------------------------------Q-------------------GGLAERVAVPKGALLPLPEGR   99 (131)
T ss_dssp             TEEEEEECS------------------------------S-------------------CCSBSEEEEEGGGCEECCTTC
T ss_pred             cceEEEEec------------------------------c-------------------CccceeeeeCHHHeEEccCCC
Confidence            999965422                              2                   499999999999999999999


Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF  209 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~  209 (267)
                      ++++|+.+.+.+.|||+++.+..  ..|++||++
T Consensus       100 ~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         100 PVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            99999999999999999876554  458888863

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=4.1e-25  Score=175.09  Aligned_cols=131  Identities=12%  Similarity=0.064  Sum_probs=110.9

Q ss_pred             ceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCccc
Q 024496           16 CKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVEEV   93 (267)
Q Consensus        16 ~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~~   93 (267)
                      |||+++.+++++  +++++++.|+|++|||||||.+++||++|.....|.++... .+|.++|+|++|+|+++|..  .|
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~-~~p~v~G~e~~G~V~~~~~~--~~   77 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIR-NFPMIPGIDFAGTVRTSEDP--RF   77 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCC-SSSBCCCSEEEEEEEEECST--TC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeeccccc-ccceeccccccccceeeccC--Cc
Confidence            899999999887  67899999999999999999999999999999999876543 78999999999999997764  79


Q ss_pred             CCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEcCC
Q 024496           94 KERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKITP  173 (267)
Q Consensus        94 ~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~iP~  173 (267)
                      ++||+|+....                        +.|...+|                   +|+||+++|+++++++|+
T Consensus        78 ~~g~~v~~~~~------------------------~~g~~~~G-------------------~~Aey~~v~~~~vv~lP~  114 (146)
T d1o89a1          78 HAGQEVLLTGW------------------------GVGENHWG-------------------GLAEQARVKGDWLVAMPQ  114 (146)
T ss_dssp             CTTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCT
T ss_pred             cceeeEEeecc------------------------cceecCCC-------------------cceeeeeeeeeeEEECCC
Confidence            99999976432                        13334444                   999999999999999999


Q ss_pred             CCChhhhhhcchhhhhHHH
Q 024496          174 HIPLGIACLLSCGVSTGVG  192 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~  192 (267)
                      ++++++||+++++..||+.
T Consensus       115 ~ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         115 GQAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             TSCCEEECGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999988777744

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=4.9e-27  Score=189.39  Aligned_cols=151  Identities=17%  Similarity=0.148  Sum_probs=126.1

Q ss_pred             ccceeEEeecCCCC--eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEecCCCc
Q 024496           14 IRCKAAICRIPGKP--LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESVGEYVE   91 (267)
Q Consensus        14 ~~~~a~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~vG~~v~   91 (267)
                      .+|||+++.+++++  +++++++.|++++|||||||++++||++|++.+.|.++... ..|.++|+|++|+|++  +.++
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~-~~~~~~g~e~~G~v~~--~~~~   78 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVR-EYPLILGIDAAGTVVS--SNDP   78 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCS-SCSEECCSEEEEEEEE--CSST
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccc-cceeeeeeeccccccc--cccc
Confidence            47999999987777  88999999999999999999999999999999999877542 6789999999999998  5667


Q ss_pred             ccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeeccceEEc
Q 024496           92 EVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDITHVVKI  171 (267)
Q Consensus        92 ~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~i  171 (267)
                      ++++||+|.....                        ..|...+|                   +|+||+++|+++++++
T Consensus        79 ~~~~g~~v~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~l~~i  115 (162)
T d1tt7a1          79 RFAEGDEVIATSY------------------------ELGVSRDG-------------------GLSEYASVPGDWLVPL  115 (162)
T ss_dssp             TCCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSSEEECGGGEEEC
T ss_pred             ccccceeeEeeec------------------------cceecccc-------------------ccceEEEecHHHEEEC
Confidence            8999999976532                        13334444                   9999999999999999


Q ss_pred             CCCCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC
Q 024496          172 TPHIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL  211 (267)
Q Consensus       172 P~~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~  211 (267)
                      |+++++++|+.+++.+.|+|.++. ..+...+++|||+|+
T Consensus       116 P~~ls~~~Aa~~~~~~~ta~~~~~-~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1         116 PQNLSLKEAMVDQLLTIVDREVSL-EETPGALKDILQNRI  154 (162)
T ss_dssp             CTTCCHHHHHHSCSTTSEEEEECS-TTHHHHHHHTTTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEECC
Confidence            999999999999999999987432 233445566777765

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=1.2e-26  Score=188.61  Aligned_cols=159  Identities=16%  Similarity=0.115  Sum_probs=128.0

Q ss_pred             cccceeEEeecCCCC---eEE--EEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCC--------CCCCcccceee
Q 024496           13 VIRCKAAICRIPGKP---LVI--EEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPK--------LPLPVIFGHEA   79 (267)
Q Consensus        13 ~~~~~a~~~~~~~~~---~~~--~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~--------~~~p~~~G~e~   79 (267)
                      |.+|||+++.++|+|   +++  .++|.|+|+++||||||++++||++|++++.|.++...        ...|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            578999999999987   444  56777788999999999999999999999988764321        24678899999


Q ss_pred             EEEEEEecCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 024496           80 VGVVESVGEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTE  159 (267)
Q Consensus        80 ~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~  159 (267)
                      +|+|+++|..+..++.||+|.....                             ..                   |+|+|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~~-------------------g~~ae  112 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------NF-------------------GTWRT  112 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------CC-------------------CCSBS
T ss_pred             ccccccccccccccccccceecccc-----------------------------cc-------------------ccccc
Confidence            9999999999999999999965322                             11                   48999


Q ss_pred             eEEeeccceEEcCCCCChhhhhhcchhhhhHHHHHHH-HhCCCCCCEEEEEc-C-CHHHHHHHHH
Q 024496          160 YSVVDITHVVKITPHIPLGIACLLSCGVSTGVGAAWK-VAGVEVGSTVAIFG-L-GAVGLAVAEG  221 (267)
Q Consensus       160 y~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~a~~~-~~~~~~g~~VlI~G-~-g~vG~~a~~l  221 (267)
                      |+.+++++++++|++++.+.++  .+...|+|+++.. ..++++|++|||+| + |++|++++|+
T Consensus       113 y~~v~~~~~~~iP~~~~~~~a~--~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ~  175 (175)
T d1gu7a1         113 HALGNDDDFIKLPNPAQSKANG--KPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY  175 (175)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTT--CSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEEC
T ss_pred             eeeehhhhccCCCccchhhhhc--cchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEeC
Confidence            9999999999999987544443  4466678775543 35799999999997 4 6799887763

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.6e-17  Score=134.41  Aligned_cols=89  Identities=21%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|++++++++|+++++++|++++||
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5899999999999999999888889999999999976 8899999999999999 9999999999999999999999999


Q ss_pred             CCCCCcccccccc
Q 024496          254 PATCGDKTVSQVN  266 (267)
Q Consensus       254 ~~~~~~~~~~~v~  266 (267)
                      +++  +++.++++
T Consensus        80 ~~~--~d~~~~v~   90 (179)
T d1qora2          80 YRE--EDLVERLK   90 (179)
T ss_dssp             TTT--SCHHHHHH
T ss_pred             CCC--CCHHHHHH
Confidence            999  88877653

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.9e-17  Score=131.79  Aligned_cols=88  Identities=24%  Similarity=0.268  Sum_probs=81.8

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++||++++++.|||+++.+..++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++++.++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5799999999999999999888889999999999996 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 024496          254 PATCGDKTVSQV  265 (267)
Q Consensus       254 ~~~~~~~~~~~v  265 (267)
                      +++  +++.+++
T Consensus        80 ~~~--~~~~~~i   89 (174)
T d1yb5a2          80 HRE--VNYIDKI   89 (174)
T ss_dssp             TTS--TTHHHHH
T ss_pred             ccc--ccHHHHh
Confidence            998  7776654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.65  E-value=1.8e-16  Score=128.49  Aligned_cols=81  Identities=48%  Similarity=0.808  Sum_probs=78.2

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++||+++|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+.+||+++++++|+++++++|++++||++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            58999999999999999988889999999999999999999999999999988999999999999999999999999988


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        83 ~   83 (176)
T d1d1ta2          83 D   83 (176)
T ss_dssp             G
T ss_pred             c
Confidence            7

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.65  E-value=1.4e-16  Score=128.35  Aligned_cols=81  Identities=57%  Similarity=0.933  Sum_probs=77.3

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      |+++||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            57899999999999999988889999999999999999999999999999998999999999999999999999999997


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        82 ~   82 (176)
T d2fzwa2          82 D   82 (176)
T ss_dssp             G
T ss_pred             c
Confidence            6

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.65  E-value=2.3e-16  Score=127.48  Aligned_cols=80  Identities=43%  Similarity=0.711  Sum_probs=76.4

Q ss_pred             hhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          177 LGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       177 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +.+||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+.+|++++++++|+++++++|+++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            45799999999999999888899999999999999999999999999999989999999999999999999999999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.64  E-value=3.1e-16  Score=125.36  Aligned_cols=86  Identities=23%  Similarity=0.349  Sum_probs=79.6

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++||+++|++.|||+++ +.+++++|++|+|+|+|++|++++|+++.+|+ +|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57999999999999999975 67999999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCcccccc
Q 024496          255 ATCGDKTVSQ  264 (267)
Q Consensus       255 ~~~~~~~~~~  264 (267)
                      ++  +++.++
T Consensus        79 ~~--~~~~~~   86 (166)
T d1llua2          79 RQ--EDPVEA   86 (166)
T ss_dssp             TT--SCHHHH
T ss_pred             cc--hhHHHH
Confidence            88  666544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.64  E-value=2.7e-16  Score=126.91  Aligned_cols=89  Identities=36%  Similarity=0.590  Sum_probs=82.5

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      ++++.|++++|++.|||+++++..++++|++|+|+|+|++|++++|+++++|+++|++++++++|+++++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35788999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCccccccc
Q 024496          255 ATCGDKTVSQV  265 (267)
Q Consensus       255 ~~~~~~~~~~v  265 (267)
                      ++  +++.+++
T Consensus        81 ~~--~~~~~~i   89 (174)
T d1f8fa2          81 KT--QDPVAAI   89 (174)
T ss_dssp             TT--SCHHHHH
T ss_pred             CC--cCHHHHH
Confidence            98  7776654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.63  E-value=2.1e-16  Score=127.80  Aligned_cols=88  Identities=39%  Similarity=0.593  Sum_probs=81.1

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +|+++|+.++++++|+|+++ +.+++++|++|+|+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            47899999999999999975 67999999999999999999999999999999899999999999999999999999999


Q ss_pred             CCCCccccccc
Q 024496          255 ATCGDKTVSQV  265 (267)
Q Consensus       255 ~~~~~~~~~~v  265 (267)
                      ++  +++.+++
T Consensus        80 ~~--~~~~~~v   88 (174)
T d1jqba2          80 KN--GHIEDQV   88 (174)
T ss_dssp             GG--SCHHHHH
T ss_pred             cc--hhHHHHH
Confidence            88  6665543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.62  E-value=7.4e-16  Score=124.54  Aligned_cols=81  Identities=49%  Similarity=0.806  Sum_probs=77.3

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++++||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+++|++++++++|+++++++|+++++|++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46889999999999999988899999999999999999999999999999999999999999999999999999999986


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        82 ~   82 (174)
T d1e3ia2          82 E   82 (174)
T ss_dssp             G
T ss_pred             c
Confidence            5

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.62  E-value=9e-15  Score=114.83  Aligned_cols=134  Identities=18%  Similarity=0.150  Sum_probs=98.6

Q ss_pred             cccceeEEeecC--CCC----eEEEEeecCCCCCCeEEEEEeeeeCChhhHHhHhcCCCCCCCCCCcccceeeEEEEEEe
Q 024496           13 VIRCKAAICRIP--GKP----LVIEEIEVEPPKAWEIRIKILCTSLCHSDVTFWKSSTDLPKLPLPVIFGHEAVGVVESV   86 (267)
Q Consensus        13 ~~~~~a~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~~~p~~~G~e~~G~V~~v   86 (267)
                      |++.|.+++.+.  |.|    |++++.+.|+|++||||||+++.++++....... .  .   .....+..+++|+|++ 
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~-~--~---~~g~~~~g~~vg~Vv~-   73 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK-R--L---KEGAVMMGQQVARVVE-   73 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG-G--S---CTTSBCCCCEEEEEEE-
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc-c--c---ccCCccccceEEEEEE-
Confidence            456778888664  444    8999999999999999999999999987543322 1  1   2334566688999987 


Q ss_pred             cCCCcccCCCCEEEeeccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecc
Q 024496           87 GEYVEEVKERDLVLPIFHRDCGECRDCKSSKSNTCSKFGRGYRPNMPRDGTSRFRELKGDVIHHFLNISSFTEYSVVDIT  166 (267)
Q Consensus        87 G~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~  166 (267)
                       ++.++|++||+|...                                                    ++|+||.+++.+
T Consensus        74 -S~~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~  100 (147)
T d1v3va1          74 -SKNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGK  100 (147)
T ss_dssp             -ESCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSS
T ss_pred             -eCCCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccc
Confidence             788899999999542                                                    379999999999


Q ss_pred             ceEEcCCCCChh-----hhhhcchhhhh-HHHHHHHHhCCCCCCEEEE
Q 024496          167 HVVKITPHIPLG-----IACLLSCGVST-GVGAAWKVAGVEVGSTVAI  208 (267)
Q Consensus       167 ~~~~iP~~~~~~-----~aa~l~~~~~t-a~~a~~~~~~~~~g~~VlI  208 (267)
                      .+.++|++++..     ..+++.....| ||.+++  ...+.|++|++
T Consensus       101 ~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         101 GLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             SCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             eeeEccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            999998765433     34445556666 454443  34577999987

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.60  E-value=1.7e-15  Score=121.96  Aligned_cols=81  Identities=60%  Similarity=0.970  Sum_probs=77.6

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      |+++||++.|++.|+|+++.+.+++++|++|+|+|+|++|++++++++..++.+|++++++++|++.++++|++++||++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57899999999999999988889999999999999999999999999999998999999999999999999999999987


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        82 ~   82 (175)
T d1cdoa2          82 D   82 (175)
T ss_dssp             G
T ss_pred             C
Confidence            7

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.59  E-value=1.9e-15  Score=121.81  Aligned_cols=81  Identities=53%  Similarity=0.880  Sum_probs=77.4

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      |+++||+++|++.|+|+++.+..++++|++|+|+|+|++|++++++++.+|+.+|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            57899999999999999998899999999999999999999999999999988999999999999999999999999986


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        82 ~   82 (176)
T d2jhfa2          82 D   82 (176)
T ss_dssp             G
T ss_pred             C
Confidence            5

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1e-15  Score=123.88  Aligned_cols=85  Identities=19%  Similarity=0.203  Sum_probs=78.8

Q ss_pred             hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +|||++++++.|||+++++..++++|++|||+|+ |++|++++|+|+.+|+ +++++++++++.+.++++|+++++|+++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            4799999999999999888889999999999986 9999999999999999 9999888999999999999999999998


Q ss_pred             CCccccccc
Q 024496          257 CGDKTVSQV  265 (267)
Q Consensus       257 ~~~~~~~~v  265 (267)
                        +++.+++
T Consensus        80 --~~~~~~v   86 (183)
T d1pqwa_          80 --VDFADEI   86 (183)
T ss_dssp             --STHHHHH
T ss_pred             --cCHHHHH
Confidence              7776655

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2e-15  Score=122.45  Aligned_cols=81  Identities=23%  Similarity=0.273  Sum_probs=75.8

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      ++..+|.+.|+.+|||+++.+..++++|++|||+|+|++|++++|+|+++|+++|++++++++|+++++++|+++++|++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETT
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEecc
Confidence            35678888999999999887778899999999999999999999999999998999999999999999999999999998


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        82 ~   82 (182)
T d1vj0a2          82 E   82 (182)
T ss_dssp             T
T ss_pred             c
Confidence            8

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=3.7e-15  Score=119.39  Aligned_cols=79  Identities=25%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPA  255 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~  255 (267)
                      +++.||++.|+..|+|+++ +..++++|++|+|+|+|++|++++|+|+.+|+ +|++++++++|+++++++|+++++|+.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            5677899999999999975 57899999999999999999999999999999 899999999999999999999999986


Q ss_pred             C
Q 024496          256 T  256 (267)
Q Consensus       256 ~  256 (267)
                      +
T Consensus        80 ~   80 (168)
T d1piwa2          80 E   80 (168)
T ss_dssp             G
T ss_pred             c
Confidence            6

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.57  E-value=5.3e-15  Score=117.91  Aligned_cols=85  Identities=29%  Similarity=0.484  Sum_probs=78.8

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++||+++|++.|||+++ +..++++|++|+|+|+|++|++++++++..|+ +|++++++++|++.++++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            57899999999999999965 67899999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCccccc
Q 024496          255 ATCGDKTVS  263 (267)
Q Consensus       255 ~~~~~~~~~  263 (267)
                      ++  +++.+
T Consensus        79 ~~--~~~~~   85 (168)
T d1rjwa2          79 LK--EDAAK   85 (168)
T ss_dssp             TT--SCHHH
T ss_pred             cc--chhhh
Confidence            88  66544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=3.1e-15  Score=120.34  Aligned_cols=80  Identities=23%  Similarity=0.239  Sum_probs=74.9

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++++||++++++.|||+++ +..++++|++|||+|+ |++|++++|+|+++|+ +|+++++++++++.++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            57899999999999999976 5689999999999986 9999999999999999 9999999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus        79 ~~~   81 (171)
T d1iz0a2          79 YAE   81 (171)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            876

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=9.5e-15  Score=116.93  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=74.4

Q ss_pred             CCChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          174 HIPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       174 ~~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +.+++.+|++.|+..|+|+++ +..++++|++|+|+|+|++|++++|+|+.+|+ ++++++++++++++++++|+++++|
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~   80 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVN   80 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEE
T ss_pred             cccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEE
Confidence            346778888999999999975 68999999999999999999999999999999 7778999999999999999999999


Q ss_pred             CCC
Q 024496          254 PAT  256 (267)
Q Consensus       254 ~~~  256 (267)
                      +++
T Consensus        81 ~~~   83 (168)
T d1uufa2          81 SRN   83 (168)
T ss_dssp             TTC
T ss_pred             Cch
Confidence            988

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.52  E-value=7.8e-15  Score=118.66  Aligned_cols=81  Identities=11%  Similarity=0.038  Sum_probs=73.9

Q ss_pred             CChhhhhhcchhhhhHHHHH---HHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          175 IPLGIACLLSCGVSTGVGAA---WKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~---~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +++++||.+++++.|||+++   .+..+.++|++|||+|+ |+||.+++|+|+.+|+ +|+++.+++++.+.++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            57999999999999999764   34577899999999986 9999999999999999 9999999999999999999999


Q ss_pred             EECCCC
Q 024496          251 FINPAT  256 (267)
Q Consensus       251 vi~~~~  256 (267)
                      ++|+++
T Consensus        80 vi~~~~   85 (176)
T d1xa0a2          80 VLARED   85 (176)
T ss_dssp             EEECC-
T ss_pred             eeecch
Confidence            999876

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.52  E-value=1.3e-14  Score=117.57  Aligned_cols=81  Identities=27%  Similarity=0.293  Sum_probs=74.7

Q ss_pred             hhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCc
Q 024496          181 CLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATCGD  259 (267)
Q Consensus       181 a~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~  259 (267)
                      +++.+++.|||+++.+..++++|++|||+|+ |.+|++++|+|+.+|+ +||++++++++.+.++++|+++++++++  +
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~--~   84 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT--V   84 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS--C
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc--c
Confidence            4677899999999988999999999999987 8999999999999999 9999999999999999999999999988  7


Q ss_pred             ccccc
Q 024496          260 KTVSQ  264 (267)
Q Consensus       260 ~~~~~  264 (267)
                      ++.++
T Consensus        85 ~~~~~   89 (182)
T d1v3va2          85 NSLEE   89 (182)
T ss_dssp             SCHHH
T ss_pred             cHHHH
Confidence            76554

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.51  E-value=2.8e-14  Score=114.19  Aligned_cols=88  Identities=25%  Similarity=0.370  Sum_probs=80.3

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEEC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~  253 (267)
                      +++.+||+++|++.|||+++ +..+++++++|+|+|+ |++|++++++++++|+.+|++++++++|+++++++|+++++|
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            47899999999999999975 7799999999999996 999999999999999889999999999999999999999999


Q ss_pred             CCCCCccccccc
Q 024496          254 PATCGDKTVSQV  265 (267)
Q Consensus       254 ~~~~~~~~~~~v  265 (267)
                      +++  +++.+++
T Consensus        80 ~~~--~~~~~~~   89 (170)
T d1jvba2          80 ASM--QDPLAEI   89 (170)
T ss_dssp             TTT--SCHHHHH
T ss_pred             cCC--cCHHHHH
Confidence            988  6665543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3e-14  Score=114.17  Aligned_cols=80  Identities=20%  Similarity=0.390  Sum_probs=74.4

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++||++. ++++||++ .+++++++|++|+|+|+|++|++++++++.+|+.+|++++++++|+++++++|+++++++
T Consensus         1 vS~e~Aal~e-pla~a~~a-~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHA-CRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            4789998775 88999996 567899999999999999999999999999999899999999999999999999999998


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus        79 ~~   80 (171)
T d1pl8a2          79 SK   80 (171)
T ss_dssp             SS
T ss_pred             cc
Confidence            87

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.48  E-value=6.3e-14  Score=115.00  Aligned_cols=84  Identities=36%  Similarity=0.317  Sum_probs=76.6

Q ss_pred             hhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCCC
Q 024496          178 GIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPATC  257 (267)
Q Consensus       178 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~  257 (267)
                      ++.+.+...++|||+++ +.+++++|++|||+|+|++|++++++|+++|+.+|++++++++|+++++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            46677888999999985 6799999999999999999999999999999999999999999999999999999999988 


Q ss_pred             Ccccccc
Q 024496          258 GDKTVSQ  264 (267)
Q Consensus       258 ~~~~~~~  264 (267)
                       +++.++
T Consensus        80 -~~~~~~   85 (195)
T d1kola2          80 -TPLHEQ   85 (195)
T ss_dssp             -SCHHHH
T ss_pred             -cCHHHH
Confidence             666544

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.47  E-value=9.6e-14  Score=111.36  Aligned_cols=81  Identities=22%  Similarity=0.325  Sum_probs=75.1

Q ss_pred             ChhhhhhcchhhhhHHHHHHHHh-CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          176 PLGIACLLSCGVSTGVGAAWKVA-GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       176 ~~~~aa~l~~~~~ta~~a~~~~~-~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      .+.++|+++|++.|||+++.+.. .+++|++|+|+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|+
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEET
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecC
Confidence            46788999999999999887655 58999999999999999999999999999899999999999999999999999999


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      ++
T Consensus        85 ~~   86 (172)
T d1h2ba2          85 RR   86 (172)
T ss_dssp             TS
T ss_pred             cc
Confidence            87

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=3.6e-14  Score=114.80  Aligned_cols=87  Identities=14%  Similarity=0.107  Sum_probs=75.0

Q ss_pred             CChhhhhhcchhhhhHHHHHH--HHhC-CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          175 IPLGIACLLSCGVSTGVGAAW--KVAG-VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~--~~~~-~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +++.+|+.++++..|||++++  ...+ .+++++|||+|+ |++|++++|+||.+|+ +||++.+++++.+.++++|+|+
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999998754  3344 445669999986 9999999999999999 8999999999999999999999


Q ss_pred             EECCCCCCcccccc
Q 024496          251 FINPATCGDKTVSQ  264 (267)
Q Consensus       251 vi~~~~~~~~~~~~  264 (267)
                      ++|+++  +++.+.
T Consensus        80 vi~~~~--~~~~~~   91 (177)
T d1o89a2          80 VLPRDE--FAESRP   91 (177)
T ss_dssp             EEEGGG--SSSCCS
T ss_pred             cccccc--HHHHHH
Confidence            999988  666544

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.43  E-value=3.9e-13  Score=107.28  Aligned_cols=79  Identities=29%  Similarity=0.454  Sum_probs=71.7

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINP  254 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~  254 (267)
                      +++++||++. ++++||++ .+..++++|++|+|+|+|++|++++|+++++|+ +|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a-~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHA-CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHH-HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHH-HHHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            4789998875 88899996 577899999999999999999999999999999 99999999999999999999988766


Q ss_pred             CC
Q 024496          255 AT  256 (267)
Q Consensus       255 ~~  256 (267)
                      +.
T Consensus        78 ~~   79 (170)
T d1e3ja2          78 DP   79 (170)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=2.8e-13  Score=94.26  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             CChhhhhhcchhhhhHHHHHH---HHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          175 IPLGIACLLSCGVSTGVGAAW---KVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~---~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +++++|+.++++..|||.+++   +....+++++|||+|+ |++|.+++|+++.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            578999999999999998765   3456789999999987 9999999999999999 89999999999999999985

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.38  E-value=1.3e-13  Score=112.26  Aligned_cols=81  Identities=20%  Similarity=0.115  Sum_probs=70.5

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCCCEEEEE-cC-CHHHHHHHHHHHHcCCCeEEEEcCCh----hhHHHHHHcCC
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVGSTVAIF-GL-GAVGLAVAEGARLNRASKIIGVDINP----EKFEIGKKFGI  248 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlI~-G~-g~vG~~a~~la~~~g~~~vi~~~~~~----~~~~~~~~~G~  248 (267)
                      +++++||++++++.|||+++.+..++++|++|+|+ |+ |++|++++|+||++|+ +||++.++.    ++.+.++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            57899999999999999998888899999999887 55 9999999999999999 888876554    34556789999


Q ss_pred             CEEECCCC
Q 024496          249 TDFINPAT  256 (267)
Q Consensus       249 ~~vi~~~~  256 (267)
                      ++++++++
T Consensus        80 d~vi~~~~   87 (189)
T d1gu7a2          80 TQVITEDQ   87 (189)
T ss_dssp             SEEEEHHH
T ss_pred             cEEEeccc
Confidence            99999865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.6e-13  Score=110.33  Aligned_cols=88  Identities=18%  Similarity=0.243  Sum_probs=72.2

Q ss_pred             CChhhhhhcchhhhhHHHHHHHHhCCCCC--CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHH-HHHHcCCCE
Q 024496          175 IPLGIACLLSCGVSTGVGAAWKVAGVEVG--STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFE-IGKKFGITD  250 (267)
Q Consensus       175 ~~~~~aa~l~~~~~ta~~a~~~~~~~~~g--~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~-~~~~~G~~~  250 (267)
                      +++.+.+ ++++..|||+++.+..++++|  ++|||+|+ |++|++++|+||.+|+++|+++++++++.. +.+++|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4555544 567899999999999999987  88999986 999999999999999977887776665555 456899999


Q ss_pred             EECCCCCCccccccc
Q 024496          251 FINPATCGDKTVSQV  265 (267)
Q Consensus       251 vi~~~~~~~~~~~~v  265 (267)
                      ++|+++  +++.+.+
T Consensus        81 vi~~~~--~~~~~~~   93 (187)
T d1vj1a2          81 AVNYKT--GNVAEQL   93 (187)
T ss_dssp             EEETTS--SCHHHHH
T ss_pred             Eeeccc--hhHHHHH
Confidence            999999  7766544

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.16  E-value=1.2e-11  Score=98.68  Aligned_cols=70  Identities=16%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             hhhhHHHH---HHHHhCCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          186 GVSTGVGA---AWKVAGVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       186 ~~~ta~~a---~~~~~~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      +..|||.+   +.+....+++++|||+|+ |++|++++|+|+.+|+ +||++.++++|.+.++++|+++++++++
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~   77 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED   77 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc
Confidence            44566644   444556778889999986 9999999999999999 9999999999999999999999998865

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.21  E-value=0.00032  Score=55.21  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      +..+|+|+|+|.+|+.|+..|+.+|+ .|.++|.+.++++++++++...
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~   75 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKF   75 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEE
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcce
Confidence            34689999999999999999999999 9999999999999999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.94  E-value=0.0011  Score=51.16  Aligned_cols=55  Identities=15%  Similarity=0.092  Sum_probs=47.2

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCC
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGI  248 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~  248 (267)
                      +++..++.++++|+|+|+|+.+.+++..++..|+++|.++.|+.++.+.+.+ ++.
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~   63 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGY   63 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhh
Confidence            4567777788999999999999999999999999899999999998887753 453

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.66  E-value=0.0021  Score=49.65  Aligned_cols=44  Identities=30%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      +..+|+|+|+|.+|+.|+..|+.+|+ .|.++|.+.++++.++..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~   74 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETL   74 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHh
Confidence            45789999999999999999999999 999999999999988764

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.0055  Score=47.05  Aligned_cols=50  Identities=10%  Similarity=0.004  Sum_probs=41.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +.+..-..++++|||+|+|+.+.+++..+..+|+ +|+++.|+.+|.+.+.
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~   58 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELA   58 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHH
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHH
Confidence            3333335678999999999999999999889999 7999999999887764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.40  E-value=0.0068  Score=47.38  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=39.6

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ..-+|++|+|.|+ |++|...+..+...|+ +|++++|+.++.+.+.
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~   64 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAA   64 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHH
Confidence            3568999999997 9999999999988999 9999999998887664

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.32  E-value=0.0043  Score=47.06  Aligned_cols=43  Identities=14%  Similarity=-0.003  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++++|+|+|+|.+|...++.+...|. +|++++++.++.+.+.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHh
Confidence            36899999999999999998888898 89999999999998865

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.18  E-value=0.0057  Score=44.79  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=40.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCCEEE
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGITDFI  252 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~~vi  252 (267)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+.+ ++.. ++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~-vi   48 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDAL-VI   48 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSE-EE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhh-hc
Confidence            68999999999999999999998 99999999999988764 6755 44

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=95.94  E-value=0.018  Score=43.70  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=47.2

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH-HHHcCCCEEECCC
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI-GKKFGITDFINPA  255 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~-~~~~G~~~vi~~~  255 (267)
                      .+..+--.+.+|||+|+|.+|.+.+..+...|++++.++.|+.+|.+. ++++|. ++++++
T Consensus        16 ~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-~~~~~~   76 (159)
T d1gpja2          16 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-EAVRFD   76 (159)
T ss_dssp             HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-EECCGG
T ss_pred             HHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-ccccch
Confidence            445556688999999999999999999999999889999999888764 456664 344443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.011  Score=45.75  Aligned_cols=42  Identities=19%  Similarity=0.284  Sum_probs=36.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      -++++|+|+|+|+.+.+++..+...|+++++++.|++++.+.
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~   57 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK   57 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHH
Confidence            477899999999999999988888999999999998766553

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.91  E-value=0.0043  Score=45.39  Aligned_cols=48  Identities=25%  Similarity=0.402  Sum_probs=42.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEE
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFI  252 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi  252 (267)
                      ++++|+|.|.+|...++.+...|. .|++++.++++.+.+++.|...++
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~   48 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI   48 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCccee
Confidence            357888999999999999999999 999999999999999888875544

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.82  E-value=0.0097  Score=45.46  Aligned_cols=45  Identities=27%  Similarity=0.368  Sum_probs=40.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .++|.|+|+|.+|++.+..+...|. .|.++++++++.+.+++.|.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~   45 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGA   45 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            3689999999999999999999998 99999999999999887663

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.78  E-value=0.015  Score=43.98  Aligned_cols=49  Identities=20%  Similarity=0.305  Sum_probs=41.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC-CEEECC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI-TDFINP  254 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~-~~vi~~  254 (267)
                      +|.|+|.|.+|...+..++..|. +|++.++++++++.++++|. +...+.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~   51 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQD   51 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeee
Confidence            68999999999988888888898 99999999999999999884 555443

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.72  E-value=0.012  Score=47.88  Aligned_cols=50  Identities=24%  Similarity=0.274  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCE
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITD  250 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~  250 (267)
                      .-+|+++||.|+ +++|.+.++.+...|+ +|+++++++++.+.+++.+...
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~   52 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAF   52 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeE
Confidence            357899999987 8999999988888999 9999999999888888777643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.011  Score=48.12  Aligned_cols=46  Identities=13%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~   52 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP   52 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC
Confidence            37899999987 8999999998888999 9999999999887764 454

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.70  E-value=0.012  Score=46.58  Aligned_cols=48  Identities=33%  Similarity=0.364  Sum_probs=44.5

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      -.|.+|+|.|-|.+|..+++++...|+ +|++.+.+.+++....++|++
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~   72 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHT   72 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccc
Confidence            478999999999999999999999999 999999999999998888875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0087  Score=49.29  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=38.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -+|+++||.|+ +++|.+.+..+...|+ +|++++|++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            47899999998 8999998888888999 9999999999887764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0052  Score=42.34  Aligned_cols=35  Identities=26%  Similarity=0.274  Sum_probs=31.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|++|+|+|.|..|+++++++...|+ +|++.|...
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~   38 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRM   38 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            57899999999999999999999999 999998744

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.58  E-value=0.013  Score=48.12  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~   46 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDEC   46 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            7899999987 8999999988888999 999999999876654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.022  Score=46.46  Aligned_cols=43  Identities=14%  Similarity=0.169  Sum_probs=38.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~   48 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQ   48 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH
Confidence            6899999987 8999999988888999 99999999999888764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.35  E-value=0.017  Score=47.28  Aligned_cols=42  Identities=21%  Similarity=0.204  Sum_probs=37.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~   50 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEEL   50 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            46889999987 8999998888888999 999999999887775

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.017  Score=46.78  Aligned_cols=45  Identities=13%  Similarity=0.157  Sum_probs=38.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~   50 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP   50 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC
Confidence            6899999987 8999999998888999 9999999998877664 443

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.34  E-value=0.017  Score=47.79  Aligned_cols=46  Identities=24%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. ++|.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~   51 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGD   51 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCC
Confidence            5899999987 8999999988888999 9999999998886654 4553

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.32  E-value=0.018  Score=46.70  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+ +++.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~   52 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAH   52 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCe
Confidence            5789999987 8999999999988999 99999999998887654 5543

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.31  E-value=0.017  Score=47.90  Aligned_cols=42  Identities=12%  Similarity=0.001  Sum_probs=36.2

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      -+|+++||.|+ +++|.+.+..+...|+ +|+++++++++++..
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~   65 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKAT   65 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHH
Confidence            35799999987 8999999988888999 999999998876544

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.29  E-value=0.018  Score=47.17  Aligned_cols=42  Identities=29%  Similarity=0.360  Sum_probs=36.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   46 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAE   46 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6899999987 8999998888888999 9999999998877653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.28  E-value=0.018  Score=47.29  Aligned_cols=42  Identities=21%  Similarity=0.110  Sum_probs=37.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+.+||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~   47 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVC   47 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6889999987 8999999888888899 9999999998887764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.018  Score=46.86  Aligned_cols=42  Identities=33%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .|+++||.|+ +++|.+.+..+...|+ +|++++++.++++.+.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~   44 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCK   44 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5889999987 8999999998888999 9999999998877653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.23  E-value=0.02  Score=46.57  Aligned_cols=46  Identities=17%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~   51 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA   51 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh
Confidence            46899999987 8999999988888999 9999999998887764 454

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.23  E-value=0.024  Score=43.41  Aligned_cols=45  Identities=16%  Similarity=0.070  Sum_probs=37.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ..++++|+|+|+|+.+.+++..+...+ .+|+++.|+.++.+.+.+
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~   59 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAE   59 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHH
Confidence            457889999999999999888777645 599999999998887643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.016  Score=46.73  Aligned_cols=47  Identities=28%  Similarity=0.215  Sum_probs=39.4

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      -+|+.+||.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++.
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~   51 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGN   51 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCC
Confidence            36899999987 8999999988888999 9999999988777654 5554

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.016  Score=47.09  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=38.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFG  247 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G  247 (267)
                      +|++++|.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~   49 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG   49 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC
Confidence            5889999987 8999999988888999 9999999999887764 454

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.13  E-value=0.009  Score=45.88  Aligned_cols=35  Identities=17%  Similarity=0.176  Sum_probs=30.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +++|+|+|+|+.|+.++..+...|++.|.++++++
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            68899999999999999999999996688887665

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.012  Score=47.73  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=39.3

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHc
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~  246 (267)
                      -+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~   49 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKY   49 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            46889999987 8999999999999999 999999999888776553

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.06  E-value=0.016  Score=47.84  Aligned_cols=42  Identities=24%  Similarity=0.239  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   45 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETK   45 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5889999987 8999998888888999 9999999998876653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.02  E-value=0.024  Score=46.33  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   48 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDC   48 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            6899999987 8999998888888999 999999999887665

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.01  E-value=0.012  Score=47.17  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +++|+|+|+|+.|++++..+...|. +|.+++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCC
Confidence            5789999999999999999988999 99999864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.01  E-value=0.017  Score=47.61  Aligned_cols=42  Identities=21%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~   46 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETR   46 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5788999987 8999999988888999 9999999998877653

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.025  Score=46.01  Aligned_cols=41  Identities=17%  Similarity=0.233  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++..
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~   45 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEA   45 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5889999987 8999999988888999 999999998876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.026  Score=45.82  Aligned_cols=43  Identities=26%  Similarity=0.223  Sum_probs=36.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      -.|+.+||.|+ +++|...+.-+...|+ +|+++++++++++.+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~   48 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETA   48 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            36899999987 8999998777777899 9999999999887653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.93  E-value=0.026  Score=46.08  Aligned_cols=41  Identities=29%  Similarity=0.281  Sum_probs=36.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~   44 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEAS   44 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5789999987 8999999988888999 999999999887665

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=94.93  E-value=0.026  Score=46.06  Aligned_cols=46  Identities=26%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGI  248 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~  248 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. ++|.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~   51 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGD   51 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGG
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC
Confidence            6899999987 8999998888888899 8999999998887754 5653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.026  Score=47.18  Aligned_cols=43  Identities=12%  Similarity=0.142  Sum_probs=37.4

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .-+|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~   52 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSA   52 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            457899999987 8999999888888899 999999999887654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.88  E-value=0.019  Score=46.95  Aligned_cols=42  Identities=21%  Similarity=0.062  Sum_probs=36.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~   49 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECL   49 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6889999987 8999999988888999 9999999998876653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.86  E-value=0.019  Score=46.82  Aligned_cols=47  Identities=30%  Similarity=0.285  Sum_probs=39.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~  249 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+ +++|..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~   52 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPA   52 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCc
Confidence            5788999987 8999999988888999 999999999888765 457654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.018  Score=47.10  Aligned_cols=41  Identities=22%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~   51 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHV   51 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            6889999987 8999999988888999 999999999887665

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.029  Score=43.78  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=34.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++|.|+|+|.+|...++++...|+ +|+..|++++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHH
Confidence            589999999999998888888999 999999999876654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=94.77  E-value=0.022  Score=46.39  Aligned_cols=42  Identities=24%  Similarity=0.159  Sum_probs=37.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~   47 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAA   47 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            5889999987 8999999888888999 9999999998887764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.76  E-value=0.045  Score=41.90  Aligned_cols=49  Identities=27%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             HHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       193 a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++.+...--++++|+|+|+|+++.+++..+.  +..+|.++.|+.++.+.+
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGG~arai~~aL~--~~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           8 ALEEEIGRVKDKNIVIYGAGGAARAVAFELA--KDNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHHCCCCSCEEEEECCSHHHHHHHHHHT--SSSEEEEECSSHHHHHHH
T ss_pred             HHHHhCCCcCCCEEEEECCcHHHHHHHHHHc--cccceeeehhhhhHHHHH
Confidence            3444455568899999999999998776553  455999999999988765

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.75  E-value=0.027  Score=45.20  Aligned_cols=40  Identities=20%  Similarity=0.166  Sum_probs=34.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~   43 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKR   43 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHh
Confidence            5789999987 8999999999888999 99999998765543

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=94.70  E-value=0.033  Score=44.91  Aligned_cols=48  Identities=17%  Similarity=0.194  Sum_probs=41.0

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGIT  249 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~  249 (267)
                      -+|+++||.|+ +++|.+.++-+...|+ +|++++++.++++.+. +++.+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~   52 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAE   52 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCc
Confidence            46899999987 8999999999999999 9999999998887764 56754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.69  E-value=0.023  Score=46.48  Aligned_cols=42  Identities=21%  Similarity=0.163  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|+.+||.|+ +++|.+.++.+...|+ +|+++++++++++.+.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~   46 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETR   46 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            6788899987 8999999888888999 9999999998876653

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=94.61  E-value=0.025  Score=46.03  Aligned_cols=49  Identities=24%  Similarity=0.183  Sum_probs=40.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH-HcCCCEE
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK-KFGITDF  251 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~-~~G~~~v  251 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+. +++...+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~   55 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSM   55 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeE
Confidence            6789999987 8999999988888999 9999999998887764 5675444

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.61  E-value=0.021  Score=45.60  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=30.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..++|+|+|+|+.|++++..+...|. +|.++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            45789999999999999998888899 999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.027  Score=40.11  Aligned_cols=35  Identities=26%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +.+|.|+|+|.+|.+.++.|+.+|+ +++++|.+++
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCC
Confidence            3579999999999999999999999 8899886653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.59  E-value=0.046  Score=41.20  Aligned_cols=50  Identities=34%  Similarity=0.482  Sum_probs=41.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHcCC-CEEECC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKKFGI-TDFINP  254 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~G~-~~vi~~  254 (267)
                      +|+|+|.|.+|.+.+..++..|.. +|+++|++++.++.+++.|. +.+...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~   54 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTS   54 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhh
Confidence            699999999999988888888753 89999999999999999885 555443

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.54  E-value=0.035  Score=46.74  Aligned_cols=44  Identities=25%  Similarity=0.209  Sum_probs=37.1

Q ss_pred             CCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +.+|++|||.|+ |.+|...+..+...|+ +|+++.|+.++.+.++
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQ   52 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHH
Confidence            678999999987 9999998887777898 9999998887766553

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=94.40  E-value=0.024  Score=46.29  Aligned_cols=41  Identities=17%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|+++++++++++.+
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~   49 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEV   49 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            5789999987 8999999998888999 999999988766543

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.027  Score=43.60  Aligned_cols=37  Identities=24%  Similarity=0.303  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ....++|+|+|+|+.|+.|+..+..+|. +|.+++.++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            5567899999999999999999999999 999998754

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.21  E-value=0.035  Score=45.09  Aligned_cols=42  Identities=10%  Similarity=0.111  Sum_probs=35.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +++.+||.|+ +++|.+.+..+...|+ +|+++++++++++.+.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~   51 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVV   51 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence            5778899987 8999998888888899 9999999998876653

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.18  Score=38.21  Aligned_cols=55  Identities=22%  Similarity=0.269  Sum_probs=43.8

Q ss_pred             HHHHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          192 GAAWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       192 ~a~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      .++.+..+ .-.|++|.|+|-|-+|...++.++.+|+ +|++++..+-+.-++.--|
T Consensus        12 ~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG   67 (163)
T d1li4a1          12 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEG   67 (163)
T ss_dssp             HHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT
T ss_pred             HHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCc
Confidence            34556555 4589999999999999999999999999 9999999886554443334

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=93.96  E-value=0.057  Score=43.78  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      |+.+||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~   42 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTT   42 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            567789987 8999998888888899 999999998877665

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=93.95  E-value=0.03  Score=45.33  Aligned_cols=39  Identities=23%  Similarity=0.158  Sum_probs=32.7

Q ss_pred             CCCCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          199 GVEVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++|+.++||.|+ +++|.+.+..+-..|+++|+.+.|+.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~   44 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSG   44 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSG
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            5789999999987 89999988888778996688777653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.84  E-value=0.1  Score=35.88  Aligned_cols=55  Identities=22%  Similarity=0.218  Sum_probs=42.3

Q ss_pred             CCCCCEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCCEEECCC
Q 024496          200 VEVGSTVAIFGLGAVGLAV-AEGARLNRASKIIGVDINP-EKFEIGKKFGITDFINPA  255 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a-~~la~~~g~~~vi~~~~~~-~~~~~~~~~G~~~vi~~~  255 (267)
                      ....+++.++|.|++|+.+ +++++.+|+ .|.+.|... ...+.+++.|..-...+.
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~   61 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHA   61 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCc
Confidence            4567889999999999887 889999999 999999763 455666778986444333

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.021  Score=44.59  Aligned_cols=39  Identities=21%  Similarity=0.272  Sum_probs=33.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .++|+|+|+ |.+|...+..+...|. +|.++.|+++++..
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~   42 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPS   42 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhccc
Confidence            478999998 9999999988888898 99999998877543

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.77  E-value=0.047  Score=44.36  Aligned_cols=43  Identities=14%  Similarity=0.079  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          200 VEVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       200 ~~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .-+|+++||.|+ |  ++|.+.++.+...|+ +|++++++++..+.+
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~   47 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRV   47 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH
Confidence            346899999986 5  799999998889999 999999987544443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.70  E-value=0.06  Score=40.44  Aligned_cols=39  Identities=26%  Similarity=0.230  Sum_probs=34.1

Q ss_pred             EEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          205 TVAIF-GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~-G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|.|+ |+|.+|.+.++.+...|+ +|++.+|++++.+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            68888 569999999999999999 9999999999887764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.028  Score=37.45  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=30.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ++|.|+|+|.+|.+.++.++.+|. ++++++.+++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCC
Confidence            479999999999999999999999 9999986653

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.53  E-value=0.11  Score=36.70  Aligned_cols=43  Identities=14%  Similarity=0.023  Sum_probs=36.3

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+.....++++|+|+|+|.+|+=.+..++.+|. +|.++.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            4556677889999999999999999999998998 888887654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.21  Score=33.79  Aligned_cols=49  Identities=24%  Similarity=0.449  Sum_probs=38.5

Q ss_pred             CEEEEEcCCHHHHHH-HHHHHHcCCCeEEEEcCCh-hhHHHHHHcCCCEEEC
Q 024496          204 STVAIFGLGAVGLAV-AEGARLNRASKIIGVDINP-EKFEIGKKFGITDFIN  253 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a-~~la~~~g~~~vi~~~~~~-~~~~~~~~~G~~~vi~  253 (267)
                      .+|-++|.|++|+.+ +++++.+|+ .|.+.|..+ +..+.++++|+.-...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~g   52 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVP   52 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESS
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEee
Confidence            467788999899865 688889999 999999877 5566788899874433

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.46  E-value=0.043  Score=44.61  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .....++|+|+|+|..|++++..+...|. +|.+++.++
T Consensus        26 ~~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            34556799999999999999988888898 999998643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.46  E-value=0.042  Score=44.67  Aligned_cols=41  Identities=15%  Similarity=0.055  Sum_probs=31.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|++|||.|+ +++|.+.+......|+ +|+++.+..++.+.+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~   45 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTAL   45 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHH
Confidence            5899999987 8999998888888899 777765555444433

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=93.45  E-value=0.18  Score=40.41  Aligned_cols=49  Identities=24%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      --.|.+|+|.|-|.+|..+++++..+|+ ++++++.+..+.+.+.. .|+.
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            3578999999999999999999999999 99999999988877764 5654

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.40  E-value=0.14  Score=37.84  Aligned_cols=45  Identities=29%  Similarity=0.295  Sum_probs=35.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH-cCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK-FGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~-~G~~  249 (267)
                      +|.++|+|.+|.+.+.-+...|..+|++.++++++++.+.+ +|..
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~   47 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVE   47 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCE
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccc
Confidence            68899999999987764333454599999999999888764 6764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=93.37  E-value=0.045  Score=42.41  Aligned_cols=39  Identities=28%  Similarity=0.389  Sum_probs=33.9

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      ++|.|+|+|.+|...+.++...|+ +|++.|++++.++..
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            569999999999998888888899 999999999876654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.26  E-value=0.034  Score=43.08  Aligned_cols=33  Identities=15%  Similarity=0.299  Sum_probs=28.3

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|++++..+...|.++|.++++++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999888888976799988654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.25  E-value=0.076  Score=42.82  Aligned_cols=41  Identities=15%  Similarity=0.175  Sum_probs=33.6

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|++++++++..+.+
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~   50 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEA   50 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHH
Confidence            6899999997 5  799998888888899 899998887655444

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.22  E-value=0.059  Score=42.77  Aligned_cols=37  Identities=19%  Similarity=0.124  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ....++|+|+|+|+.|+.++..++.+|. +|.+++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            4577899999999999999999999999 899987655

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.064  Score=43.10  Aligned_cols=44  Identities=11%  Similarity=0.110  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          200 VEVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       200 ~~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .-+|+++||.|+ +  ++|.+.+..+...|+ +|++++++++..+.+.
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~   48 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVE   48 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHH
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            457899999987 5  688888888888899 8999999876665543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.098  Score=41.22  Aligned_cols=51  Identities=24%  Similarity=0.329  Sum_probs=42.1

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +.+..++++|++||-+|+|. |..++.+|+..|. .+|++++.+++..+.+++
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~  118 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKR  118 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhh
Confidence            46778999999999999866 7777888888764 389999999988877754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.07  E-value=0.069  Score=41.96  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +..++|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            445689999999999999999999999 89999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.05  E-value=0.097  Score=42.62  Aligned_cols=50  Identities=24%  Similarity=0.130  Sum_probs=36.9

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHH----HHHcCCCEE
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEI----GKKFGITDF  251 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~----~~~~G~~~v  251 (267)
                      -+|+++||.|+ +++|.+.++.+...|+ +|++++++ ++.++.    +++.|.+..
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~   71 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAA   71 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCcee
Confidence            35789999987 8999999988888999 88888765 444333    345565443

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=92.95  E-value=0.081  Score=39.97  Aligned_cols=49  Identities=14%  Similarity=0.155  Sum_probs=39.9

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+....+.+|.+||.+|+|. |..+..+|+ .|+ +|+++|.+++-++.+++
T Consensus        12 ~~~~l~~~~~~rvLd~GCG~-G~~a~~la~-~G~-~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          12 YWSSLNVVPGARVLVPLCGK-SQDMSWLSG-QGY-HVVGAELSEAAVERYFT   60 (201)
T ss_dssp             HHHHHCCCTTCEEEETTTCC-SHHHHHHHH-HCC-EEEEEEECHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcC-CHHHHHHHH-cCC-ceEeecccHHHHHHHHH
Confidence            35667899999999998753 356667776 498 99999999999998875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.91  E-value=0.079  Score=42.98  Aligned_cols=40  Identities=20%  Similarity=0.312  Sum_probs=32.9

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC-hhhHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN-PEKFEI  242 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~-~~~~~~  242 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++ +++++.
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~   44 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEK   44 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHH
Confidence            6889999987 8999998888888999 99999986 444444

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.89  E-value=0.057  Score=43.06  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=28.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|++++.+++..|..+|.++++.+
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            689999999999999999999976888877654

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.087  Score=42.97  Aligned_cols=42  Identities=19%  Similarity=0.216  Sum_probs=32.3

Q ss_pred             CCCEE-EEEcC-CHHHHHHHH-HHHHcCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTV-AIFGL-GAVGLAVAE-GARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~V-lI~G~-g~vG~~a~~-la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .|++| ||.|+ +++|++.+. |++..|+ +|+.++|++++.+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~   45 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAV   45 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH
Confidence            37788 55587 899998765 5665677 9999999998876653

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.86  E-value=0.098  Score=42.55  Aligned_cols=47  Identities=26%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh-hHHH----HHHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE-KFEI----GKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~-~~~~----~~~~G~~  249 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++.+ +.+.    +++.|.+
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~   58 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGE   58 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCc
Confidence            6889999987 8999998888888899 9999988753 3333    3445643

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.83  E-value=0.066  Score=43.10  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=36.5

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHHc
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKKF  246 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~~  246 (267)
                      .++|||.|+ +++|.+.++.+...|+. +|++++|+.++++.+++.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~   48 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI   48 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh
Confidence            478999987 89999988777777863 788899999998888764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.69  E-value=0.11  Score=41.88  Aligned_cols=38  Identities=16%  Similarity=0.086  Sum_probs=32.3

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+||.|+ +++|.+.+..+...|+ +|+++++++++++.+
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~   41 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAV   41 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHH
Confidence            3588887 8999998888878899 999999999887665

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.57  E-value=0.18  Score=35.98  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=34.5

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.......++++|+|+|+|.+|+-+++.+..+|. +|.++.+.+
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3344455677899999999999999999999999 888886543

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.077  Score=42.66  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      ++..+|+|+|+|..|++|+..+...|. +|.++..
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            566789999999999999999998999 8888864

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.56  E-value=0.2  Score=40.19  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh--HHHHHHcCCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK--FEIGKKFGIT  249 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~--~~~~~~~G~~  249 (267)
                      +|+.+||.|+ +++|.+.++.+...|+ +|+++++++++  .+.+++.|..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~   53 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRR   53 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCc
Confidence            5789999987 8999999998888999 99999887643  2334566643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.43  E-value=0.069  Score=42.64  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|++|||.|+ +++|.+.++.....|+ +|+.+++.+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            5789999987 8999999999999999 888886654

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.038  Score=42.33  Aligned_cols=34  Identities=21%  Similarity=0.155  Sum_probs=29.3

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      +++..|+|+|+|+.|+.++..+..+|. +|+++++
T Consensus         3 ~k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~   36 (190)
T d1trba1           3 TKHSKLLILGSGPAGYTAAVYAARANL-QPVLITG   36 (190)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEe
Confidence            466789999999999999999998999 7777764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=92.11  E-value=0.13  Score=38.41  Aligned_cols=42  Identities=21%  Similarity=0.249  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      .++..+|.|+|+|.+|...+.++...+..+++.+|.++++.+
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~   45 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPE   45 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccch
Confidence            356688999999999988888877778778999998876543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.80  E-value=0.09  Score=43.85  Aligned_cols=36  Identities=19%  Similarity=0.163  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .+++|||+|+ |.+|...++.+...|. .|+++++.+.
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            5799999987 9999999999999999 8999988654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.69  E-value=0.19  Score=37.48  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=38.7

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      +|.|+|.|.+|...+.-+...|. +|++.++++++.+.+++.|+.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~   45 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAE   45 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhh
Confidence            58899999999988877777899 999999999999999888764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=91.65  E-value=0.12  Score=41.70  Aligned_cols=49  Identities=18%  Similarity=0.159  Sum_probs=36.5

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH----HHcCCCE
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG----KKFGITD  250 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~----~~~G~~~  250 (267)
                      -.|+++||.|+ +++|.+.++.+...|+ +|+++ .++++..+.+    .+.|.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~   58 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQG   58 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCc
Confidence            46899999987 8999999998888999 77765 5555554443    4567543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.54  E-value=0.13  Score=37.96  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=29.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~  237 (267)
                      +|++|+|+|+|.+|+.++..++..+.+ +|.++++++
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            488999999999999988888877753 788887655

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.50  E-value=0.08  Score=42.92  Aligned_cols=32  Identities=22%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|++++..+...|. +|.++++.+
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            58999999999999999998999 899998765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.41  E-value=0.16  Score=39.52  Aligned_cols=39  Identities=33%  Similarity=0.579  Sum_probs=33.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|.|+|.|-+|+..+..+...|. +|+++|.++++.+.+.
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhc
Confidence            58899999999987777777898 9999999998887764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.36  E-value=0.19  Score=35.58  Aligned_cols=39  Identities=8%  Similarity=0.062  Sum_probs=32.9

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..++..++|+|+|+|.+|+=.+..+..+|. +|.++.+.+
T Consensus        17 ~~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          17 FNIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TTCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             hccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            345566899999999999999999999999 888887654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.33  E-value=0.11  Score=43.43  Aligned_cols=34  Identities=15%  Similarity=0.214  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++|+|+|+|..|+.++..+...|. +|.+++.+.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~   35 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRD   35 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCC
Confidence            5789999999999999998888888 999997655

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.32  E-value=0.17  Score=36.01  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.++++++|+|+|.+|.=.+..++.+|. +|..+.+++
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~   63 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQP   63 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeecc
Confidence            5677999999999999999999999999 888886655

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.31  E-value=0.17  Score=40.09  Aligned_cols=65  Identities=17%  Similarity=0.333  Sum_probs=45.8

Q ss_pred             cchhhhhHHHHHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH----HHcCCCEE
Q 024496          183 LSCGVSTGVGAAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG----KKFGITDF  251 (267)
Q Consensus       183 l~~~~~ta~~a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~----~~~G~~~v  251 (267)
                      +..+...|.  +++..++++|++||.+|+|. |..++.+++..|. +|++++++++-.+.+    +++|.+.+
T Consensus        61 is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv  129 (215)
T d1jg1a_          61 VSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNV  129 (215)
T ss_dssp             ECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSE
T ss_pred             hhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCcee
Confidence            333444442  56778999999999998743 6666778877775 899999988766555    34676544

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.29  E-value=0.058  Score=43.33  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +|+++||.|+ +++|.+.++.+...|+ +|++++++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~   42 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSG   42 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc
Confidence            6889999987 8999999998888999 9999988665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.20  E-value=0.17  Score=35.51  Aligned_cols=35  Identities=14%  Similarity=0.206  Sum_probs=30.2

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .++++|+|+|.+|+-+++.+..+|. +|.++.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            4789999999999999999999999 8888866553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.06  E-value=0.35  Score=34.56  Aligned_cols=63  Identities=19%  Similarity=0.176  Sum_probs=50.9

Q ss_pred             HHHHhCCCCCCEEEEE-cCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          194 AWKVAGVEVGSTVAIF-GLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~-G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .+..+++..-+.+++. ..-..-+++.++++.++..++++...+++..+.++++|++.++++..
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~~  120 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPEL  120 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHHH
Confidence            5667788777766665 34456677888999999989999998999999999999999998754

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.95  E-value=0.22  Score=35.99  Aligned_cols=39  Identities=21%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..+.++++|+|+|+|.+|+-++..++.+|. +|.++.+.+
T Consensus        30 ~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          30 RQLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             HhhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            345678999999999999999999999999 888887654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.91  E-value=0.098  Score=41.59  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=30.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      +.+|||.|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCch
Confidence            457999987 8999999998888999 8999988753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.91  E-value=0.11  Score=40.87  Aligned_cols=36  Identities=17%  Similarity=0.246  Sum_probs=30.7

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ++++||.|+ +++|.+.++.+...|+ +|+++++++++
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCccc
Confidence            367889987 8999999988888899 99999987764

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.89  E-value=0.33  Score=33.83  Aligned_cols=35  Identities=17%  Similarity=0.003  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|++|||+|+|.+|..-+..+...|+ +|++++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~   45 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTF   45 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            57899999999999999999999999 777765433

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.71  E-value=0.092  Score=42.12  Aligned_cols=41  Identities=15%  Similarity=0.160  Sum_probs=31.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHH---HcCCCeEEEEcCChhhHHHHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGAR---LNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~---~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++|||.|+ +++|.+.++.+.   ..|+ +|++++|++++++.+++
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~   47 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELED   47 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            57999998 899998776543   2477 99999999988766543

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.69  E-value=0.13  Score=39.39  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=27.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      |+|+|+|..|+.++..+...|. +|.++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            7899999999998888888898 999998764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.67  E-value=0.12  Score=41.34  Aligned_cols=33  Identities=24%  Similarity=0.205  Sum_probs=28.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|+|+|+|+.|++++..+...|. +|.+++++++
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            48999999999998888888898 8999987764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.65  E-value=0.18  Score=35.46  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++|+|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecc
Confidence            3689999999999999999999999 888887765

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.60  E-value=0.21  Score=38.35  Aligned_cols=38  Identities=29%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +|.|+|.|-+|+..+.++ +.|. +|+++|.++++.+.++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHh
Confidence            688999999999876655 4688 9999999999887765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.50  E-value=0.12  Score=40.67  Aligned_cols=32  Identities=31%  Similarity=0.416  Sum_probs=27.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      |+|+|+|+.|++++..+...|. +|+++++++.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCC
Confidence            7899999999988887777899 9999987653

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.16  Score=40.93  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=32.4

Q ss_pred             CCCEEEEEcC-CHHHHHHHH-HHHH--cCCCeEEEEcCChhhHHHHH
Q 024496          202 VGSTVAIFGL-GAVGLAVAE-GARL--NRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~-la~~--~g~~~vi~~~~~~~~~~~~~  244 (267)
                      .|+.++|.|+ +++|.+.++ ||+.  .|+ +|+++++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4666777787 899998654 5653  588 9999999999887763

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.46  E-value=0.2  Score=39.91  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh------hh-HHHHHHcCCCEEECCCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP------EK-FEIGKKFGITDFINPAT  256 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~------~~-~~~~~~~G~~~vi~~~~  256 (267)
                      -+|||+|+ |.+|...+..++..|. +|+++++.+      +. .+.+++...|.|++...
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~D~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDLDITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhccCCCHHHHHHHHHHcCCCEEEeecc
Confidence            46999998 9999999999998899 999998764      22 23345567888886543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.31  E-value=0.27  Score=36.48  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~  241 (267)
                      |..+|.|+|+|.+|...+.++...+..+++.+|.++++.+
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~   41 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPH   41 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcce
Confidence            4568999999999998888888888889999998876543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.19  E-value=0.38  Score=38.58  Aligned_cols=36  Identities=42%  Similarity=0.354  Sum_probs=31.6

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      ..--.|.+|+|.|-|.+|..+++++..+|+ +|++++
T Consensus        26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vs   61 (242)
T d1v9la1          26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVS   61 (242)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEee
Confidence            344589999999999999999999999999 888765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.14  E-value=0.1  Score=41.36  Aligned_cols=31  Identities=32%  Similarity=0.405  Sum_probs=27.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +|+|+|+|..|+.++..+...|. +|.+++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecC
Confidence            58999999999999988888899 89998764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=90.07  E-value=0.22  Score=38.82  Aligned_cols=36  Identities=25%  Similarity=0.267  Sum_probs=32.6

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      .|++|.|+|-|.+|...+++++.+|+ +|++.++...
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~   77 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRN   77 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCcccc
Confidence            47899999999999999999999999 9999986543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.91  E-value=0.31  Score=35.61  Aligned_cols=52  Identities=17%  Similarity=0.059  Sum_probs=42.5

Q ss_pred             CEEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          204 STVAIFG-LGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       204 ~~VlI~G-~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      ++|.|+| .|.+|...+..++..|+ .|.+.+++++........+++.++....
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~   62 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP   62 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc
Confidence            5899999 69999999999998999 9999999887777666667776665443

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.88  E-value=0.22  Score=38.24  Aligned_cols=36  Identities=31%  Similarity=0.461  Sum_probs=32.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|++|.|+|.|.+|...+++++.+|. +|++.++.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeecccc-ccccccccc
Confidence            357899999999999999999999999 999998765

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.81  E-value=0.23  Score=35.28  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=30.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -++++|+|+|.+|+=+++++..+|. +|.++.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            3689999999999999999999999 888887655

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=89.79  E-value=0.16  Score=42.06  Aligned_cols=33  Identities=18%  Similarity=0.142  Sum_probs=29.3

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|||..|++++..++..|. .+.+++.++
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            368999999999999999999999 899998765

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.74  E-value=0.38  Score=35.72  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=38.2

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGIT  249 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~  249 (267)
                      ++|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+...|+.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~   46 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGAS   46 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcc
Confidence            468999999999877666666788 999999999999998888765

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.70  E-value=0.15  Score=39.39  Aligned_cols=31  Identities=26%  Similarity=0.191  Sum_probs=27.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .|+|+|+|+.|+.++..+..+|. +|++++..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            48899999999999999998999 88888754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=89.69  E-value=0.18  Score=39.37  Aligned_cols=35  Identities=29%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|++|.|+|.|.+|...+++++..|. +|++.++..
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   78 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYP   78 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCcc
Confidence            46899999999999999999999999 999998754

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.60  E-value=0.16  Score=37.38  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      -.|++|||+|+|.+|.--+..+...|+ +|.++.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEe
Confidence            368999999999999999999999999 777774

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.16  Score=37.98  Aligned_cols=30  Identities=23%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      .|+|+|+|+.|+.++..+...|. +|.++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            48899999999999999999999 7887864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.53  E-value=0.32  Score=40.24  Aligned_cols=34  Identities=26%  Similarity=0.288  Sum_probs=29.5

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +|+++||.|+ +++|.+.+..+...|+ +|++.+++
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~   40 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG   40 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            5888999987 8999998888888999 89988654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=89.25  E-value=0.33  Score=38.71  Aligned_cols=41  Identities=15%  Similarity=0.316  Sum_probs=33.7

Q ss_pred             CCCCCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          199 GVEVGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       199 ~~~~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +.-+|+++||.|+ |  ++|.+.++-+...|+ +|+.++++.+++
T Consensus         2 ~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~   45 (268)
T d2h7ma1           2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRL   45 (268)
T ss_dssp             CTTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHH
Confidence            4567899999985 4  599988887878899 899999887765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=89.21  E-value=0.22  Score=36.67  Aligned_cols=37  Identities=16%  Similarity=0.231  Sum_probs=30.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      +|+|+|+|.+|.+.+..+...|. .|..+++++++.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~   38 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCS   38 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhh
Confidence            79999999999887777777888 99999888765443

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.13  E-value=0.28  Score=34.94  Aligned_cols=33  Identities=15%  Similarity=0.044  Sum_probs=29.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++++|+|+|.+|+=.+..++.+|. +|.++.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            689999999999999999999999 888887764

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.06  E-value=0.33  Score=34.21  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=29.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..++++|+|+|.+|+=.++++..+|. +|.++.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            34789999999999999999999999 777775544

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=88.97  E-value=0.45  Score=37.69  Aligned_cols=49  Identities=24%  Similarity=0.368  Sum_probs=39.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.+...+++|++||-+|+| .|..++.+++. +. +|++++.+++..+.+++
T Consensus        62 ml~~L~l~~g~~VLdIG~G-sGy~ta~La~l-~~-~V~aiE~~~~~~~~A~~  110 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTG-IGYYTALIAEI-VD-KVVSVEINEKMYNYASK  110 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEEESCHHHHHHHHH
T ss_pred             HHHHhhhcccceEEEecCC-CCHHHHHHHHH-hc-ccccccccHHHHHHHHH
Confidence            4677899999999999986 45666777775 44 89999999988888765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.88  E-value=0.29  Score=37.46  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=31.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCC-eEEEEcCChhhHHH
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRAS-KIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~  242 (267)
                      .+|||.|+ |.+|...+..+...|.. .|+.+.|++++.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~   44 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK   44 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHh
Confidence            58999997 99999999999888863 57777888776554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=88.85  E-value=0.34  Score=39.11  Aligned_cols=51  Identities=12%  Similarity=0.136  Sum_probs=38.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +....++++|++||=.|+|. |.++..+|++.+. .+|++++.+++.++.+++
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~  128 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMD  128 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHH
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHH
Confidence            34567899999999998754 5666778887654 389999999998888764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=88.62  E-value=0.42  Score=35.19  Aligned_cols=40  Identities=25%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKFE  241 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~~  241 (267)
                      ...+|.|+|+|.+|...+..+...+ +.+++.+|+++++.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~   44 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTK   44 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhH
Confidence            4568999999999998887777766 458999999887643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.59  E-value=0.33  Score=33.88  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .++++|+|+|.+|+-+++.++.+|. +|.++.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            3789999999999999999999999 888887654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.58  E-value=0.2  Score=38.69  Aligned_cols=31  Identities=19%  Similarity=0.212  Sum_probs=27.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .|+|+|+|+.|+.++..|..+|. +|.++++.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            37899999999999999999999 88888764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=88.52  E-value=1.1  Score=33.46  Aligned_cols=49  Identities=22%  Similarity=0.258  Sum_probs=41.2

Q ss_pred             HHHHhC-CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          194 AWKVAG-VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       194 ~~~~~~-~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      +.+..+ .-.|++++|.|=|-+|...++-++.+|+ +|++++.++-+.=++
T Consensus        13 i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA   62 (163)
T d1v8ba1          13 LMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQA   62 (163)
T ss_dssp             HHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHH
T ss_pred             HHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHH
Confidence            445555 5789999999999999999999999999 999999998554444

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=88.41  E-value=0.25  Score=39.16  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=27.5

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|||.|+ +++|.+.++.+...|+ +|+++++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            4788887 8999999988888999 899998765

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=88.37  E-value=0.29  Score=37.90  Aligned_cols=36  Identities=36%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|++|.|+|.|.+|...+++++..|+ +|++.++..
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~   82 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYL   82 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred             eeCceEEEeccccccccceeeeecccc-ceeeccCcc
Confidence            357899999999999999999999999 999998754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=88.37  E-value=0.31  Score=37.51  Aligned_cols=43  Identities=21%  Similarity=0.250  Sum_probs=36.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFG  247 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G  247 (267)
                      .+|.|+|+|..|.+.+.++-..|. +|...+++++..+.+.+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~   50 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKR   50 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcc
Confidence            369999999999998887777777 8999999999888876533

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=88.24  E-value=0.41  Score=38.36  Aligned_cols=35  Identities=17%  Similarity=0.039  Sum_probs=29.3

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +-.+|||+|+ |.+|...+..+...|. +|+++.|++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            3457999997 9999999998888997 888888754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.20  E-value=0.33  Score=40.05  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +.+.....++++||-+|+| .|.++..+|+ .|+++|++++.++.-.
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILY   71 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHH
Confidence            4444567789999999886 4555555665 5888999999887543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.18  E-value=0.26  Score=40.20  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=28.7

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++|||.|+ |.+|...+..+...|+ +|+++++..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            58999998 9999999998888899 999998754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=88.13  E-value=0.38  Score=36.17  Aligned_cols=43  Identities=23%  Similarity=0.166  Sum_probs=36.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      +|.|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            47899999999987777777898 99999999999998876553

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.05  E-value=0.26  Score=40.86  Aligned_cols=34  Identities=24%  Similarity=0.365  Sum_probs=26.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~  237 (267)
                      ++|+|+|+|+.|++++..++..+. .+|++++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            589999999999988766554443 3899998764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.01  E-value=0.25  Score=37.89  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      |+|+|+|+.|+.++..|..+|. +|.++++.
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~   35 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKG   35 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecC
Confidence            7888999999999999999999 88888654

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=87.92  E-value=0.45  Score=35.77  Aligned_cols=44  Identities=11%  Similarity=0.074  Sum_probs=37.0

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCC
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGI  248 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~  248 (267)
                      .+|.|+|.|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            468899999999887777777899 99999999999998876543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.91  E-value=0.27  Score=40.84  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=32.1

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +.++|+|+|+ |.+|...+..+...|. +|+++.|+..+.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4678999997 9999999999988999 888888876544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.90  E-value=0.25  Score=37.63  Aligned_cols=31  Identities=19%  Similarity=0.162  Sum_probs=26.3

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      ..+|+|+|+|+.|+.++..+...|. ++++++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie   35 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAEL-KPLLFE   35 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CCEEEC
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCC-cEEEEE
Confidence            3579999999999998888888899 777775

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.86  E-value=0.38  Score=39.52  Aligned_cols=50  Identities=16%  Similarity=0.270  Sum_probs=40.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.+..++++|++||=+|+|- |..++.+|+..|+ +|.+++.+++..+.+++
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~  103 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQ  103 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHH
Confidence            56778999999999998742 4556678888899 99999999988777654

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.85  E-value=0.25  Score=38.20  Aligned_cols=31  Identities=26%  Similarity=0.203  Sum_probs=26.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .|+|+|+|+.|+.|+..+..+|. +|++++..
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~   37 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKR   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEec
Confidence            47899999999998888888899 88888754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=87.82  E-value=0.19  Score=40.08  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=30.1

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      -++|||+|+ |.+|...+..+...|. +|++++|+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            367999998 9999999999988898 8999987653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.78  E-value=0.31  Score=34.59  Aligned_cols=33  Identities=12%  Similarity=-0.053  Sum_probs=28.1

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++++|+|+|.+|+=.+++++.+|. +|.++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            3679999999999999999999999 66666655

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.22  Score=40.43  Aligned_cols=29  Identities=21%  Similarity=0.304  Sum_probs=25.8

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      |+|+|+|..|++++..++..|. +|.+++.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            7899999999999888888999 8888864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.72  E-value=0.27  Score=38.35  Aligned_cols=32  Identities=25%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|+.|+.++..+...|. +|.+++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47899999999999999999999 888887543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.59  E-value=0.61  Score=34.25  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhH
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKF  240 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~  240 (267)
                      ..+.+|.|+|+|.+|...+..+...+. .+++.+|.++++.
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~   44 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA   44 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc
Confidence            456789999999999988887777664 4799999988773

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=87.58  E-value=0.5  Score=34.75  Aligned_cols=37  Identities=38%  Similarity=0.528  Sum_probs=30.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKF  240 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~  240 (267)
                      ++|.|+|+|.+|...+..+...+ +.+++.+|.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            68999999999988887777666 45899999988864

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.54  E-value=0.19  Score=40.37  Aligned_cols=40  Identities=10%  Similarity=-0.061  Sum_probs=33.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ++||.|+ +++|.+.+..+...|+ +|++++++.++++.+++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEA   42 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh
Confidence            6789987 8999998888888899 99999998887776654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.36  Score=37.85  Aligned_cols=47  Identities=15%  Similarity=0.027  Sum_probs=38.0

Q ss_pred             HHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          196 KVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       196 ~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      ......++.+||.+|+|. |..+..+|+ .|+ +|+++|.+++-++.+++
T Consensus        39 ~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          39 TFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFT   85 (229)
T ss_dssp             HHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHH
Confidence            445678999999998865 566677776 699 99999999999888764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=87.52  E-value=0.7  Score=37.44  Aligned_cols=51  Identities=20%  Similarity=0.215  Sum_probs=41.7

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~~  245 (267)
                      +....++++|++||=.|+|. |.++..+|+..+. .+|+.++.+++..+.+++
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~  146 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAES  146 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHH
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHH
Confidence            46778999999999998765 6667788888763 399999999998888754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.49  E-value=0.31  Score=38.76  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=27.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|.+|++++..+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48999999999998777777898 999998753

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.48  E-value=0.33  Score=39.38  Aligned_cols=38  Identities=26%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             CCCEEEEEcC-C--HHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          202 VGSTVAIFGL-G--AVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       202 ~g~~VlI~G~-g--~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +|+++||.|+ |  ++|.+.++.+...|+ +|++++++++..
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~   47 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALN   47 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhhh
Confidence            6889999997 4  899999998888999 899888766433

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.43  E-value=0.65  Score=36.55  Aligned_cols=45  Identities=27%  Similarity=0.319  Sum_probs=35.8

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHHHH
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEIGK  244 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~~~  244 (267)
                      .+++|++||-+|+|. |..++.+|+..+. .+|++++..++-.+.++
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~  118 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSV  118 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHH
Confidence            789999999998753 6677788887763 38999999998776653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.31  E-value=0.26  Score=38.12  Aligned_cols=31  Identities=26%  Similarity=0.155  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            47899999999999999999999 89888754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=87.23  E-value=0.27  Score=39.89  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +|+|+|+|.+|++++..+...|..+|.+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999987766666787579999865

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=87.15  E-value=0.45  Score=33.95  Aligned_cols=36  Identities=22%  Similarity=0.274  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +..++++|+|+|.+|+=.+++.+.+|. +|.++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            345899999999999999999999999 888886554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.15  E-value=0.32  Score=34.49  Aligned_cols=35  Identities=14%  Similarity=0.271  Sum_probs=30.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ..++++|+|+|.+|+=++++...+|. +|.++.+++
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEcc
Confidence            34789999999999999999999999 888887765

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=86.98  E-value=0.49  Score=34.57  Aligned_cols=39  Identities=23%  Similarity=0.221  Sum_probs=31.4

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEI  242 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~  242 (267)
                      .+|.|+|+|.+|...+.++...+...++.+|.++++.+-
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~   40 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQG   40 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchh
Confidence            478999999999988877777777789999988876443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.94  E-value=0.34  Score=40.91  Aligned_cols=31  Identities=32%  Similarity=0.332  Sum_probs=27.6

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      |.+|||.|+ |.+|...+..+...|. +|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            689999997 9999999988888998 999997

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=86.84  E-value=0.25  Score=40.57  Aligned_cols=32  Identities=28%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             EEEEEcCCHHHHHHHHHH-----HHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGA-----RLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la-----~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|++|++++.++     +..|. +|.++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            489999999998877666     34688 888887654

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.76  E-value=0.65  Score=35.40  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      .++++.|+|.|.+|...+++++..|. +|++.++...+
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~   79 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSP   79 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence            57899999999999999999999999 99999876543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.75  E-value=0.43  Score=36.53  Aligned_cols=41  Identities=17%  Similarity=0.091  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG  243 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~  243 (267)
                      .+.+|.|+|.|.+|...++.++..|. +|+..++........
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~   83 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVE   83 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHH
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccc
Confidence            57899999999999999999999999 999998765433333

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.67  E-value=0.31  Score=37.34  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=26.4

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      |+|+|+|+.|+.|+..|...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7888999999999999998999 88888753

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.61  E-value=0.27  Score=40.35  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|||..|+.++..+...|. +|.+++...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            48999999999999999888898 899987654

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=86.47  E-value=0.72  Score=37.35  Aligned_cols=30  Identities=27%  Similarity=0.236  Sum_probs=26.5

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEc
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      .+|||.|+ |.+|...+..+...|. +|++++
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            37999987 9999999998888898 898886

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.32  E-value=0.51  Score=33.23  Aligned_cols=36  Identities=19%  Similarity=0.199  Sum_probs=30.7

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      +.+++++|+|+|.+|+=+++.+..+|. +|.++.+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEeccc
Confidence            345789999999999999999999999 888887665

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.07  E-value=0.38  Score=37.34  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=26.0

Q ss_pred             EEEEEcCCHHHHHHHHHHHHc--CCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLN--RASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~--g~~~vi~~~~~~  237 (267)
                      +|+|+|+|+.|+.++..++..  |. +|.+++..+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCC
Confidence            799999999999998866543  66 888887764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.72  E-value=0.66  Score=34.26  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .-+++|+|+|+|.+|.=++..+..+|++.|.++.+.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999988888888899888887653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.41  Score=36.74  Aligned_cols=30  Identities=30%  Similarity=0.256  Sum_probs=26.5

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7888999999999999999999 88888653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.53  E-value=0.4  Score=38.94  Aligned_cols=32  Identities=31%  Similarity=0.489  Sum_probs=27.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .|+|+|+|..|++++.-+...|+ +|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            48999999999998888888999 899997643

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=85.39  E-value=1.2  Score=31.32  Aligned_cols=63  Identities=14%  Similarity=0.057  Sum_probs=47.7

Q ss_pred             HHHHhCCCCCCEEEEE-cCC-HHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          194 AWKVAGVEVGSTVAIF-GLG-AVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~-G~g-~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      .+..+++..-+.+++. +.- ..-.++...++..+..++++-..+.+..+.++++|+++++++..
T Consensus        56 ~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~~  120 (134)
T d2hmva1          56 ELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPEK  120 (134)
T ss_dssp             HHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHHH
T ss_pred             hhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChHH
Confidence            3456777776776664 443 55566666777888779999988999999999999999998754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.26  E-value=1.4  Score=34.71  Aligned_cols=44  Identities=18%  Similarity=0.129  Sum_probs=35.4

Q ss_pred             HHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       193 a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ++.....--..++|++.|+|..|...+++....+.++++.+|+.
T Consensus        16 a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          16 ALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             HHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             HHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            33334445577899999999999999999988899999999875

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.25  E-value=0.76  Score=35.28  Aligned_cols=35  Identities=29%  Similarity=0.403  Sum_probs=31.7

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      |+++.|+|.|.+|...+++++..|. +|++.++...
T Consensus        47 g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~   81 (191)
T d1gdha1          47 NKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRA   81 (191)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCC
T ss_pred             ccceEEeecccchHHHHHHHHhhcc-cccccccccc
Confidence            7899999999999999999999999 9999887543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=85.21  E-value=0.28  Score=39.61  Aligned_cols=35  Identities=17%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             CCCEEEEEcCCHHHHHHHH-HHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAE-GARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~-la~~~g~~~vi~~~~~~  237 (267)
                      ....|+|+|+|+.|+.++. +|+..|. +|.+++..+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            3455999999999998765 5666799 999998664

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=85.18  E-value=0.76  Score=33.67  Aligned_cols=44  Identities=16%  Similarity=0.301  Sum_probs=35.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHH-HHcCCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIG-KKFGIT  249 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~-~~~G~~  249 (267)
                      +|.++|.|.+|.+.+.-....+. ++++.+++.++.+.+ +++|..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~   46 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALP   46 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCC
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhcccccee
Confidence            58899999999987775555676 999999999988776 466765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=85.17  E-value=0.54  Score=37.26  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=30.9

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ...+|+|+|+|++|..++..+-.+|..++..+|..
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            44799999999999999999999999999999744

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=85.07  E-value=0.68  Score=35.70  Aligned_cols=48  Identities=15%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +.+.++++++++||=+|+| .|..+..+++ .++ +|+++|.+++-++.++
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~-~~~-~v~gvD~s~~~i~~A~   54 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAP-FVK-KVVAFDLTEDILKVAR   54 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGG-GSS-EEEEEESCHHHHHHHH
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHH-hCC-EEEEEECCHHHHhhhh
Confidence            5677899999999999886 4555556665 466 9999999998777664

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.00  E-value=0.38  Score=37.36  Aligned_cols=30  Identities=33%  Similarity=0.417  Sum_probs=26.5

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      .|+|+|+|+.|+.++..|...|. +|.+++.
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~-kV~viE~   34 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDK-KVMVLDF   34 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCC-CEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEec
Confidence            37899999999999999998999 8888874

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.93  E-value=0.59  Score=37.07  Aligned_cols=40  Identities=15%  Similarity=0.076  Sum_probs=31.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCC------eEEEEcCChhhHHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRAS------KIIGVDINPEKFEIGK  244 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~------~vi~~~~~~~~~~~~~  244 (267)
                      .|||.|+ +++|.+.+..+...|++      .|+.+++++++++.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~   49 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKIS   49 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHH
Confidence            3678887 89999988777777884      3888999998877653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.88  E-value=0.38  Score=35.66  Aligned_cols=33  Identities=33%  Similarity=0.376  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEc
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVD  234 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~  234 (267)
                      ++++|+|+|+|.+|+-++..++.+|.+ +|+...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            578999999999999999999988885 344443

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.72  E-value=1.4  Score=31.89  Aligned_cols=54  Identities=13%  Similarity=0.181  Sum_probs=38.8

Q ss_pred             EEEEEcC-CHHHHHHHHHHHH-cCCCeEEEEcCChhhHHHHHHcCCCEEECCCCCCccc
Q 024496          205 TVAIFGL-GAVGLAVAEGARL-NRASKIIGVDINPEKFEIGKKFGITDFINPATCGDKT  261 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~-~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~~~~~~  261 (267)
                      +|.|.|+ |-+|.+.++.... .+.+-+-++++ .+........++|-+||+..  ++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~-~~~~~~~~~~~~DvvIDFS~--p~~   56 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA-GDPLSLLTDGNTEVVIDFTH--PDV   56 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT-TCCTHHHHTTTCSEEEECCC--TTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec-CCchhhhccccCCEEEEccc--HHH
Confidence            6899997 9999998887664 46634444554 34455666678999999988  543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=84.72  E-value=0.8  Score=33.21  Aligned_cols=38  Identities=16%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFEI  242 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~~  242 (267)
                      +|.|+|+|.+|...+..+...+. .+++.+|.++++.+.
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~   40 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQG   40 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchh
Confidence            68899999999988877777763 589999998876554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.35  E-value=0.49  Score=37.68  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=26.4

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .|+|+|+|.+|++++..+...|. +|+++++.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            38999999999998887777898 89999764

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=84.13  E-value=1.1  Score=32.60  Aligned_cols=38  Identities=34%  Similarity=0.456  Sum_probs=31.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHH
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFE  241 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~  241 (267)
                      .+|.|+|+|.+|..++..+...+. .+++.+|.++++.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~   40 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVE   40 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccch
Confidence            468899999999998888877775 47999999887653

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=84.04  E-value=1  Score=36.25  Aligned_cols=34  Identities=32%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      --+|.+|+|.|-|.||..+++++..+|+ +|+++.
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            4578999999999999999999999999 777763

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.99  E-value=1.3  Score=32.91  Aligned_cols=41  Identities=22%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhH
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKF  240 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~  240 (267)
                      ..+..+|.|+|+|.+|...+..+...+. .+++.+|.++++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            3456799999999999999888888875 5799999987665

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=0.68  Score=36.11  Aligned_cols=38  Identities=18%  Similarity=0.170  Sum_probs=30.6

Q ss_pred             CCCEEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCChhh
Q 024496          202 VGSTVAIFGL-GAVGLAVAEGARLNRA-SKIIGVDINPEK  239 (267)
Q Consensus       202 ~g~~VlI~G~-g~vG~~a~~la~~~g~-~~vi~~~~~~~~  239 (267)
                      .+++|||+|+ |.+|...++.+...|. .+|+++.|++.+
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~   52 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT   52 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhh
Confidence            4578999998 9999998888877775 489999886543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.65  Score=37.93  Aligned_cols=31  Identities=23%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      ++|||+|+ |.+|...+..+...|. +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            68999998 9999999988888898 8999875

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=83.83  E-value=0.64  Score=36.77  Aligned_cols=34  Identities=15%  Similarity=0.124  Sum_probs=28.7

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      ..||.|+ +++|.+.+..+...|+ +|++++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            3577787 8999999999999999 99999987654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.38  E-value=0.38  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.180  Sum_probs=26.5

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC------CeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRA------SKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~------~~vi~~~~~~  237 (267)
                      -+|+|+|+|+.|++++..+...|.      .+|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            379999999999999888776662      1677887654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.20  E-value=0.71  Score=37.65  Aligned_cols=32  Identities=19%  Similarity=0.113  Sum_probs=28.4

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +++||+|+ |.+|...+..+...|. +|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            57899998 9999999999988999 99999873

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.17  E-value=0.5  Score=38.74  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=28.3

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ..-.|+|+|+|..|+.++.-|...|+ +|++++..
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            33458999999999998888888899 89988754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.14  E-value=0.78  Score=38.00  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          201 EVGSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       201 ~~g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      .++.+|||+|+ |.+|...+..+...|. +|+++++.
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~   48 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGH-YVIASDWK   48 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            35779999987 9999999999988998 88888653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.07  E-value=0.59  Score=38.39  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=28.0

Q ss_pred             CEE-EEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STV-AIFGL-GAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~V-lI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      ++| ||.|+ |.+|...+..+...|+ +|+++++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            357 99987 9999999998888999 999998743

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=83.05  E-value=0.51  Score=38.64  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=27.0

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      |+|+|+|+.|+.|+..|...|+ +|++++..+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8999999999999988888999 898887543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=83.02  E-value=0.99  Score=35.76  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=29.0

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEE-cCChhhHHHH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGV-DINPEKFEIG  243 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~-~~~~~~~~~~  243 (267)
                      .|||.|+ +++|.+.++.+...|+ +|++. .+++++++.+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~   42 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEV   42 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHH
Confidence            4677787 8999998888888999 88775 5566665544

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.93  E-value=0.47  Score=39.29  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             hCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChh
Q 024496          198 AGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPE  238 (267)
Q Consensus       198 ~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~  238 (267)
                      ..+.+|++||-+|+|. |.++..+|+ +|+.+|++++.++.
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~   67 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI   67 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH
Confidence            3466899999998864 566666666 68879999998763

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=82.72  E-value=1.1  Score=34.59  Aligned_cols=55  Identities=16%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHHcCCCEEECCCC
Q 024496          199 GVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKKFGITDFINPAT  256 (267)
Q Consensus       199 ~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~~G~~~vi~~~~  256 (267)
                      ...++.+||=+|+| .|..+..+++ .|+ +|+++|.+++-++.+++.+...++..+.
T Consensus        39 ~~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~   93 (246)
T d2avna1          39 YLKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA   93 (246)
T ss_dssp             HCCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT
T ss_pred             hcCCCCEEEEECCC-Cchhcccccc-cce-EEEEeecccccccccccccccccccccc
Confidence            35578899888886 5777777776 588 9999999999999999877766665444

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.54  E-value=1.3  Score=36.19  Aligned_cols=32  Identities=25%  Similarity=0.317  Sum_probs=28.2

Q ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          203 GSTVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       203 g~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      -++|||+|+ |.+|...+..+...|. +|+++++
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            367999987 9999999998888999 9999875

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.51  E-value=1.3  Score=36.89  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=41.7

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCC-eEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRAS-KIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~-~vi~~~~~~~~~~~~~~  245 (267)
                      +....++++|++||=.|+|. |.++..+|++.|.. +|+.++.+++..+.+++
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKK  141 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHH
Confidence            45678899999998887754 78888999988754 89999999998888753

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=82.46  E-value=1.9  Score=33.60  Aligned_cols=51  Identities=20%  Similarity=0.222  Sum_probs=39.2

Q ss_pred             HHHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          193 AAWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       193 a~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      .+....++++|++||=+|+|. |..+..+++..|+ +|++++.+++-++.+++
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~   74 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKR   74 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHH
Confidence            356778999999998888743 2345567777788 99999999987776654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=82.41  E-value=1.4  Score=34.18  Aligned_cols=48  Identities=27%  Similarity=0.269  Sum_probs=36.2

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      +...+.+++|++||=+|+|. |..+..+++ .+. +|+++|.+++-++.++
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~-~v~gvD~S~~~l~~A~   55 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSP-YVQ-ECIGVDATKEMVEVAS   55 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCC-eEEEEeCChhhhhhhh
Confidence            56788999999999888743 444556666 466 9999999988776654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=82.32  E-value=0.85  Score=37.96  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=27.6

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      +.|||.|+ |.+|...+..+...|. +|+++++.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            57899987 9999998888888898 99999874

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.10  E-value=0.86  Score=34.70  Aligned_cols=35  Identities=23%  Similarity=0.255  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          202 VGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       202 ~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      .+.+|.|+|.|.+|...+++++..|. +|++.++..
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~   77 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIEN   77 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccc
Confidence            57899999999999999999999999 999998654

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.05  E-value=0.92  Score=37.35  Aligned_cols=33  Identities=30%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEc
Q 024496          201 EVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVD  234 (267)
Q Consensus       201 ~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~  234 (267)
                      -+|.+|+|.|-|.||..+++++..+|+ +|+++.
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            367899999999999999999999999 888774

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.97  E-value=0.61  Score=38.15  Aligned_cols=33  Identities=42%  Similarity=0.573  Sum_probs=27.8

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINP  237 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~  237 (267)
                      -.|+|+|+|..|+.++..+...|+ +|++++..+
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            348999999999998888888899 899997643

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.95  E-value=1.2  Score=32.13  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=29.2

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhHH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKFE  241 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~~  241 (267)
                      +|.|+|+|.+|...+..+...+. .+++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~   39 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAE   39 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccccccc
Confidence            68899999999987776666653 48999999887654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.63  E-value=1.8  Score=34.29  Aligned_cols=34  Identities=29%  Similarity=0.284  Sum_probs=28.4

Q ss_pred             CCCCCEEEEEcCCHHHHHHHHHH-HHcCCCeEEEEc
Q 024496          200 VEVGSTVAIFGLGAVGLAVAEGA-RLNRASKIIGVD  234 (267)
Q Consensus       200 ~~~g~~VlI~G~g~vG~~a~~la-~~~g~~~vi~~~  234 (267)
                      --++.+|+|.|.|.||..+++++ +..|+ +|++++
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            45789999999999999988876 67899 777764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=1.4  Score=31.87  Aligned_cols=35  Identities=9%  Similarity=0.120  Sum_probs=30.1

Q ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhh
Q 024496          204 STVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEK  239 (267)
Q Consensus       204 ~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~  239 (267)
                      +.++|.|.|.+|...++.++..|. .+++++.++++
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~   38 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPED   38 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchh
Confidence            468999999999999999999998 78888877754

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=81.37  E-value=1.3  Score=35.39  Aligned_cols=50  Identities=16%  Similarity=0.026  Sum_probs=38.6

Q ss_pred             HHHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHHH
Q 024496          194 AWKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGKK  245 (267)
Q Consensus       194 ~~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~~  245 (267)
                      +.....+.++.+||=+|+| .|..+..+++..|+ +|++++.++..++.+++
T Consensus        59 l~~~~~l~~~~~vLDiGcG-~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~  108 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEE  108 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCC-CcHHHhhhhccCCc-EEEEEeccchhhhhhhc
Confidence            3455689999999999875 34556677777788 99999999987776653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.29  E-value=0.82  Score=37.58  Aligned_cols=31  Identities=16%  Similarity=0.042  Sum_probs=27.0

Q ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcC
Q 024496          204 STVAIFGL-GAVGLAVAEGARLNRASKIIGVDI  235 (267)
Q Consensus       204 ~~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~  235 (267)
                      ++|||+|+ |.+|...+..+...|. +|+++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            68999987 9999999888888898 8888863

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.81  E-value=4.5  Score=33.52  Aligned_cols=59  Identities=19%  Similarity=0.213  Sum_probs=44.6

Q ss_pred             HHHhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEE--cCChhhHHHHHHcCCCEEEC
Q 024496          195 WKVAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGV--DINPEKFEIGKKFGITDFIN  253 (267)
Q Consensus       195 ~~~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~--~~~~~~~~~~~~~G~~~vi~  253 (267)
                      .+...+++++.|+...+|..|.+.+.+|+.+|.+-++++  ..+++|+++++.+|++-+..
T Consensus        89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v  149 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRT  149 (355)
T ss_dssp             HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEEC
T ss_pred             HHcCCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEe
Confidence            344456777777776779999999999999999544444  44558888899999986654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.62  E-value=1.7  Score=32.17  Aligned_cols=38  Identities=26%  Similarity=0.462  Sum_probs=31.4

Q ss_pred             CCEEEEEcCCHHHHHHHHHHHHcCC-CeEEEEcCChhhH
Q 024496          203 GSTVAIFGLGAVGLAVAEGARLNRA-SKIIGVDINPEKF  240 (267)
Q Consensus       203 g~~VlI~G~g~vG~~a~~la~~~g~-~~vi~~~~~~~~~  240 (267)
                      ..+|.|+|+|.+|...+..+...+. .+++.+|.++++.
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a   57 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVDADTDKL   57 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhh
Confidence            3579999999999999888887765 4799999887664

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.53  E-value=0.84  Score=36.16  Aligned_cols=30  Identities=30%  Similarity=0.389  Sum_probs=26.7

Q ss_pred             EEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Q 024496          206 VAIFGLGAVGLAVAEGARLNRASKIIGVDIN  236 (267)
Q Consensus       206 VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~  236 (267)
                      ++|+|+|+.|+.++..|..+|. +|.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            7889999999999999998999 88888764

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.30  E-value=1.5  Score=31.78  Aligned_cols=36  Identities=31%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             EEEEEcCCHHHHHHHHHHHHcC-CCeEEEEcCChhhH
Q 024496          205 TVAIFGLGAVGLAVAEGARLNR-ASKIIGVDINPEKF  240 (267)
Q Consensus       205 ~VlI~G~g~vG~~a~~la~~~g-~~~vi~~~~~~~~~  240 (267)
                      +|.|+|+|.+|...+..+...+ +.+++.+|.++++.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   38 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLA   38 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchh
Confidence            6889999999988877766655 45899999988774

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.25  E-value=1.8  Score=33.36  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=36.5

Q ss_pred             HhCCCCCCEEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCChhhHHHHH
Q 024496          197 VAGVEVGSTVAIFGLGAVGLAVAEGARLNRASKIIGVDINPEKFEIGK  244 (267)
Q Consensus       197 ~~~~~~g~~VlI~G~g~vG~~a~~la~~~g~~~vi~~~~~~~~~~~~~  244 (267)
                      ...++||++||=+|+|. |..+..+++..+..+|+++|.+++.++.++
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~   97 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLL   97 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHH
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHH
Confidence            46799999999998743 345566677766569999999998887764

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=80.10  E-value=0.95  Score=37.05  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=28.4

Q ss_pred             EEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCChhhH
Q 024496          205 TVAIFGL-GAVGLAVAEGARLNRASKIIGVDINPEKF  240 (267)
Q Consensus       205 ~VlI~G~-g~vG~~a~~la~~~g~~~vi~~~~~~~~~  240 (267)
                      +|||+|+ |.+|...++.+...|..+|+++++...+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~   38 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI   38 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGG
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcch
Confidence            6999987 99999988877777844899987655433