Citrus Sinensis ID: 024520

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260------

MASFLRSFGFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYKSNVNFH

cccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHccccccccccEEEEEEcccccccccccEEEEEEEccccccccccccccccccccccccccccHHHHHcccccccEEEEEEEEcccccccccEEEEccccEEEEEEEEEEcccccEEEEEEEcccccEEEccccccccEEEccccccccEEEEEEEccccEEEEEccccccccccccEEEcccccc

cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEcccEEEEEEEEcccccEEEEcccccccccEccEEccccccc

masflrsfGFNFILVVLILAIAGksnalgythpifrpgpwrlahatfygdesasetmggacgygnlfsngygtdtAALSSTlfnngyacgtcyqikcynsphcykyvpfttvtatnlcppnwsqdsnnggwcnpprahfdmskpafmkigawkagivpvlfrrvpcikpggirfafqGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNvapanwnvgltyksnvnfh

***FLRSFGFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYKS*****

********GFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYKSNVNFH

*ASFLRSFGFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYKSN****

iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		266	2.2.26 [Sep-21-2011]
Q9LN94		262	Expansin-A7 OS=Arabidopsi	yes	no	0.977	0.992	0.667	1e-101
Q8W2X8		266	Putative expansin-A30 OS=	yes	no	0.924	0.924	0.650	5e-96
Q9LQ07		257	Expansin-A18 OS=Arabidops	no	no	0.932	0.964	0.633	7e-95
O48818		257	Expansin-A4 OS=Arabidopsi	no	no	0.845	0.875	0.572	3e-73
Q9M2S9		260	Expansin-A16 OS=Arabidops	no	no	0.845	0.865	0.568	6e-73
O80932		262	Expansin-A3 OS=Arabidopsi	no	no	0.868	0.881	0.564	1e-71
Q9LZ99		258	Expansin-A9 OS=Arabidopsi	no	no	0.936	0.965	0.515	9e-71
Q0DHB7		246	Expansin-A4 OS=Oryza sati	yes	no	0.887	0.959	0.538	5e-70
A2Y5R6		246	Expansin-A4 OS=Oryza sati	N/A	no	0.887	0.959	0.538	5e-70
Q40636		251	Expansin-A2 OS=Oryza sati	no	no	0.830	0.880	0.565	2e-69

>sp\|Q9LN94\|EXPA7_ARATH Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=3 SV=1	Back alignment and function desciption

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/268 (66%), Positives = 210/268 (78%), Gaps = 8/268 (2%)

Query: 1   MASFLRSFGFN--FILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMG 58
           M     S+ FN  F +V ++ AI+G+  A GY    +RPGPWR AHATFYGDE+  ETMG
Sbjct: 1   MGPISSSWSFNKFFSIVFVVFAISGEFVA-GY----YRPGPWRYAHATFYGDETGGETMG 55

Query: 59  GACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLC 118
           GACGYGNLF++GYG  TAALS+TLFN+GY CG C+QI C  SPHCY     T VTATNLC
Sbjct: 56  GACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKS-TVVTATNLC 114

Query: 119 PPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQG 178
           PPNW QDSN GGWCNPPR HFDM+KPAFMK+  W+AGI+PV +RRVPC + GG+RF FQG
Sbjct: 115 PPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQG 174

Query: 179 NGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYS 238
           N YWLL++VMNV G GDI SM VKG+RT WISMSHNWGASYQAF++L GQ+LSF++ SY+
Sbjct: 175 NSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYT 234

Query: 239 TKETIIAYNVAPANWNVGLTYKSNVNFH 266
           T ETI A+NVAPANW+ G TYKS  NF 
Sbjct: 235 TGETIYAWNVAPANWSGGKTYKSTANFR 262

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q8W2X8\|EXP30_ORYSJ Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1	Back alignment and function description

>sp\|Q9LQ07\|EXP18_ARATH Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1	Back alignment and function description

>sp\|O48818\|EXPA4_ARATH Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1	Back alignment and function description

>sp\|Q9M2S9\|EXP16_ARATH Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1	Back alignment and function description

>sp\|O80932\|EXPA3_ARATH Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LZ99\|EXPA9_ARATH Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1	Back alignment and function description

>sp\|Q0DHB7\|EXPA4_ORYSJ Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1	Back alignment and function description

>sp\|A2Y5R6\|EXPA4_ORYSI Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1	Back alignment and function description

>sp\|Q40636\|EXPA2_ORYSJ Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		266
255537221		266	Alpha-expansin 7 precursor, putative [Ri	1.0	1.0	0.770	1e-122
225426726		264	PREDICTED: expansin-A7 [Vitis vinifera]	0.992	1.0	0.755	1e-117
356495641		260	PREDICTED: expansin-A7-like [Glycine max	0.966	0.988	0.762	1e-117
357481803		263	Expansin-A7 [Medicago truncatula] gi\|355	0.988	1.0	0.748	1e-115
388491068		263	unknown [Medicago truncatula]	0.988	1.0	0.740	1e-114
356540476		242	PREDICTED: expansin-A7-like [Glycine max	0.875	0.962	0.832	1e-113
356565307		265	PREDICTED: putative expansin-A30-like [G	0.962	0.966	0.752	1e-112
449452508		260	PREDICTED: expansin-A7-like [Cucumis sat	0.947	0.969	0.747	1e-112
388521879		262	unknown [Medicago truncatula]	0.947	0.961	0.760	1e-110
449460463		264	PREDICTED: expansin-A7-like [Cucumis sat	0.962	0.969	0.726	1e-109

>gi\|255537221\|ref\|XP_002509677.1\| Alpha-expansin 7 precursor, putative [Ricinus communis] gi\|223549576\|gb\|EEF51064.1\| Alpha-expansin 7 precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/266 (77%), Positives = 231/266 (86%)

Query: 1   MASFLRSFGFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGA 60
           MA F  S+  +F LV  I A+ G S A+GY  P+FRP  W LAHATFYGDE+AS TMGGA
Sbjct: 1   MAKFFHSWSLSFFLVASISALIGTSMAVGYGTPVFRPSQWGLAHATFYGDETASATMGGA 60

Query: 61  CGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLCPP 120
           CGYGNLF NGYGTDTAALS+ LFN+GYACGTCYQIKC  SP C+  VPFTTVTATN+CPP
Sbjct: 61  CGYGNLFQNGYGTDTAALSTALFNDGYACGTCYQIKCVQSPWCFNDVPFTTVTATNICPP 120

Query: 121 NWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNG 180
           NWSQDSN+GGWCNPPR HFDMSKPAFMKI  WKAGIVPV++RRVPC++  G+RF+FQGNG
Sbjct: 121 NWSQDSNDGGWCNPPRVHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRSDGLRFSFQGNG 180

Query: 181 YWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTK 240
           YWLLVYVMNV GGGDIA+MWVKG++TGWISMSHNWGASYQAFATL GQALSFK+ SY+TK
Sbjct: 181 YWLLVYVMNVGGGGDIANMWVKGSKTGWISMSHNWGASYQAFATLEGQALSFKLTSYTTK 240

Query: 241 ETIIAYNVAPANWNVGLTYKSNVNFH 266
           ET++A NVAP NWNVG+TYK+NVNFH
Sbjct: 241 ETVLALNVAPENWNVGMTYKTNVNFH 266

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225426726\|ref\|XP_002275613.1\| PREDICTED: expansin-A7 [Vitis vinifera] gi\|297742626\|emb\|CBI34775.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356495641\|ref\|XP_003516683.1\| PREDICTED: expansin-A7-like [Glycine max]	Back alignment and taxonomy information

>gi\|357481803\|ref\|XP_003611187.1\| Expansin-A7 [Medicago truncatula] gi\|355512522\|gb\|AES94145.1\| Expansin-A7 [Medicago truncatula]	Back alignment and taxonomy information

>gi\|388491068\|gb\|AFK33600.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356540476\|ref\|XP_003538715.1\| PREDICTED: expansin-A7-like [Glycine max]	Back alignment and taxonomy information

>gi\|356565307\|ref\|XP_003550883.1\| PREDICTED: putative expansin-A30-like [Glycine max]	Back alignment and taxonomy information

>gi\|449452508\|ref\|XP_004144001.1\| PREDICTED: expansin-A7-like [Cucumis sativus] gi\|449525541\|ref\|XP_004169775.1\| PREDICTED: expansin-A7-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|388521879\|gb\|AFK49001.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|449460463\|ref\|XP_004147965.1\| PREDICTED: expansin-A7-like [Cucumis sativus] gi\|449494260\|ref\|XP_004159495.1\| PREDICTED: expansin-A7-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		266
TAIR\|locus:2034680		262	EXPA7 "expansin A7" [Arabidops	0.973	0.988	0.670	7.1e-100
TAIR\|locus:2015539		257	EXPA18 "expansin A18" [Arabido	0.932	0.964	0.645	9e-93
TAIR\|locus:2043240		257	EXPA4 "expansin A4" [Arabidops	0.864	0.894	0.566	4.6e-73
TAIR\|locus:2099991		260	EXPA16 "expansin A16" [Arabido	0.864	0.884	0.562	4.6e-73
TAIR\|locus:2053260		257	EXPA6 "expansin A6" [Arabidops	0.928	0.961	0.531	4.1e-72
TAIR\|locus:2040686		262	EXP3 [Arabidopsis thaliana (ta	0.864	0.877	0.566	6.7e-72
TAIR\|locus:2180182		258	EXPA9 "expansin A9" [Arabidops	0.932	0.961	0.517	2.9e-71
TAIR\|locus:2133427		255	EXPA17 "expansin A17" [Arabido	0.842	0.878	0.560	2.4e-69
TAIR\|locus:2007106		275	EXPA1 "expansin A1" [Arabidops	0.819	0.792	0.558	3.1e-67
TAIR\|locus:2161028		255	EXPA14 "expansin A14" [Arabido	0.909	0.949	0.529	3.1e-67

TAIR\|locus:2034680 EXPA7 "expansin A7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 179/267 (67%), Positives = 210/267 (78%)

Query:     1 MASFLRSFGFN--FILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMG 58
             M     S+ FN  F +V ++ AI+G+  A GY    +RPGPWR AHATFYGDE+  ETMG
Sbjct:     1 MGPISSSWSFNKFFSIVFVVFAISGEFVA-GY----YRPGPWRYAHATFYGDETGGETMG 55

Query:    59 GACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTATNLC 118
             GACGYGNLF++GYG  TAALS+TLFN+GY CG C+QI C  SPHCY     T VTATNLC
Sbjct:    56 GACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKS-TVVTATNLC 114

Query:   119 PPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQG 178
             PPNW QDSN GGWCNPPR HFDM+KPAFMK+  W+AGI+PV +RRVPC + GG+RF FQG
Sbjct:   115 PPNWYQDSNAGGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRRVPCQRSGGMRFQFQG 174

Query:   179 NGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYS 238
             N YWLL++VMNV G GDI SM VKG+RT WISMSHNWGASYQAF++L GQ+LSF++ SY+
Sbjct:   175 NSYWLLIFVMNVGGAGDIKSMAVKGSRTNWISMSHNWGASYQAFSSLYGQSLSFRVTSYT 234

Query:   239 TKETIIAYNVAPANWNVGLTYKSNVNF 265
             T ETI A+NVAPANW+ G TYKS  NF
Sbjct:   235 TGETIYAWNVAPANWSGGKTYKSTANF 261

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0048446 "petal morphogenesis" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR\|locus:2015539 EXPA18 "expansin A18" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2099991 EXPA16 "expansin A16" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2180182 EXPA9 "expansin A9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2133427 EXPA17 "expansin A17" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2161028 EXPA14 "expansin A14" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8W2X8	EXP30_ORYSJ	No assigned EC number	0.6507	0.9248	0.9248	yes	no
Q9LN94	EXPA7_ARATH	No assigned EC number	0.6679	0.9774	0.9923	yes	no
A2Y5R6	EXPA4_ORYSI	No assigned EC number	0.5384	0.8872	0.9593	N/A	no
Q0DHB7	EXPA4_ORYSJ	No assigned EC number	0.5384	0.8872	0.9593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		266
PLN00193		256	PLN00193, PLN00193, expansin-A; Provisional	8e-94
PLN00050		247	PLN00050, PLN00050, expansin A; Provisional	4e-83
smart00837		87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	3e-39
pfam01357		82	pfam01357, Pollen_allerg_1, Pollen allergen	2e-25
pfam03330		77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	5e-24
PLN03023		247	PLN03023, PLN03023, Expansin-like B1; Provisional	1e-20

>gnl\|CDD\|215097 PLN00193, PLN00193, expansin-A; Provisional	Back alignment and domain information

 Score =  276 bits (707), Expect = 8e-94
 Identities = 137/268 (51%), Positives = 175/268 (65%), Gaps = 15/268 (5%)

Query: 1   MASFLRSFGFNFILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGA 60
           M+  L       IL+     +    NA       F P  W  AHATFYG   AS TMGGA
Sbjct: 1   MSKSLLGLA---ILLQFCCYLFINVNA-------FTPSGWTKAHATFYGGSDASGTMGGA 50

Query: 61  CGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKC---YNSPHCYKYVPFTTVTATNL 117
           CGYGNL+S GYGT TAALS+ LFN+G +CG CY+I C    +S  C K     T+TATN 
Sbjct: 51  CGYGNLYSTGYGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGAS-VTITATNF 109

Query: 118 CPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQ 177
           CPPN++  +NNGGWCNPP  HFDM++PA+ KIG ++ GIVPVLF+RVPC K GG+RF   
Sbjct: 110 CPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTIN 169

Query: 178 GNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSY 237
           G  Y+ LV + NV G G I S+ +KG++TGW++MS NWGA++Q+ A L GQ+LSFK+ + 
Sbjct: 170 GRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTT- 228

Query: 238 STKETIIAYNVAPANWNVGLTYKSNVNF 265
           +  +T    NV PANW  G T+ S+V F
Sbjct: 229 TDGQTRFFLNVVPANWGFGQTFSSSVQF 256

Length = 256

>gnl\|CDD\|165628 PLN00050, PLN00050, expansin A; Provisional	Back alignment and domain information

>gnl\|CDD\|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>gnl\|CDD\|216453 pfam01357, Pollen_allerg_1, Pollen allergen	Back alignment and domain information

>gnl\|CDD\|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>gnl\|CDD\|215542 PLN03023, PLN03023, Expansin-like B1; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		266
PLN00193		256	expansin-A; Provisional	100.0
PLN00050		247	expansin A; Provisional	100.0
PLN03023		247	Expansin-like B1; Provisional	100.0
PLN03024		125	Putative EG45-like domain containing protein 1; Pr	99.96
smart00837		87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.95
COG4305		232	Endoglucanase C-terminal domain/subunit and relate	99.95
PLN00115		118	pollen allergen group 3; Provisional	99.92
PF01357		82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.89
PF03330		78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.79
PF00967		119	Barwin: Barwin family; InterPro: IPR001153 Barwin	98.93
PF07249		119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.14
TIGR00413		208	rlpA rare lipoprotein A. This is a family of proka	97.96
COG0797		233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.87
PRK10672		361	rare lipoprotein A; Provisional	97.11
PF02015		201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	91.91

>PLN00193 expansin-A; Provisional	Back alignment and domain information

Probab=100.00  E-value=6e-75  Score=520.50  Aligned_cols=249  Identities=53%  Similarity=1.006  Sum_probs=231.4

Q ss_pred             HHHHHHHHHHhhcccccCCCCCccCCCCceEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCCcCCc
Q 024520           12 FILVVLILAIAGKSNALGYTHPIFRPGPWRLAHATFYGDESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGT   91 (266)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~g~aT~Yg~~~~~g~~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~   91 (266)
                      +|-+++||-+++++..+   ...+..++|++|+|||||++|++++++|||||+++...+++.++||+|++||++|+.||+
T Consensus         5 ~~~~~~~~~~~~~~~~~---~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGa   81 (256)
T PLN00193          5 LLGLAILLQFCCYLFIN---VNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQ   81 (256)
T ss_pred             hHHHHHHHHHHHHHHhh---ccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCccccC
Confidence            55566777777765544   555677789999999999999999999999999988888999999999999999999999


Q ss_pred             eEEEEeC---CCCcccCCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhccccCCeeEEEEEEeecCC
Q 024520           92 CYQIKCY---NSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAWKAGIVPVLFRRVPCIK  168 (266)
Q Consensus        92 C~ev~c~---~~~~C~~~~~sv~V~itD~CP~~~~~~~~~~~~C~~~~~hfDLs~~AF~~ia~~~~G~v~i~~r~V~C~~  168 (266)
                      ||||+|.   ++++|.++ ++|+|+|||+||+++++|+++++||++++.|||||.+||.+||.+..|+|+|+||||+|++
T Consensus        82 Cyev~C~~~~~~~~C~~g-~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~  160 (256)
T PLN00193         82 CYRIMCDYQADSRWCIKG-ASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKK  160 (256)
T ss_pred             eEEEECCCCCCCccccCC-CeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEecccc
Confidence            9999994   56789865 5999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeEEEcCCCceEEEEEEecCCCcceEEEEEEecCcceEEccCCCCceEEeccCCCCCceEEEEEEccCCeEEEEcee
Q 024520          169 PGGIRFAFQGNGYWLLVYVMNVAGGGDIASMWVKGTRTGWISMSHNWGASYQAFATLGGQALSFKIQSYSTKETIIAYNV  248 (266)
Q Consensus       169 ~g~i~~~v~sn~~w~~v~v~n~~G~~~I~sVeV~~~~~~W~~m~r~~g~~W~~~~~l~g~p~s~RvTs~~~G~~i~~~~v  248 (266)
                      +|+|+|+|++|+||++|+|.|++|+++|++||||+++++|++|+|+||++|+++.+|.++||+||||+.+ |+++++.||
T Consensus       161 ~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~-G~~~~~~~v  239 (256)
T PLN00193        161 HGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTD-GQTRFFLNV  239 (256)
T ss_pred             CCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcC-CeEEEECce
Confidence            9999999999999999999999999999999999987789999999999999998888889999999988 999999999


Q ss_pred             eCCCCCCCcEEecCccc
Q 024520          249 APANWNVGLTYKSNVNF  265 (266)
Q Consensus       249 iP~~w~~G~ty~~~~qf  265 (266)
                      ||++|++|+||++++||
T Consensus       240 iPa~W~~G~ty~s~vqf  256 (256)
T PLN00193        240 VPANWGFGQTFSSSVQF  256 (256)
T ss_pred             eCCCCCCCCeEecCccC
Confidence            99999999999999998

>PLN00050 expansin A; Provisional	Back alignment and domain information

>PLN03023 Expansin-like B1; Provisional	Back alignment and domain information

>PLN03024 Putative EG45-like domain containing protein 1; Provisional	Back alignment and domain information

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel	Back alignment and domain information

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN00115 pollen allergen group 3; Provisional	Back alignment and domain information

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []	Back alignment and domain information

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures	Back alignment and domain information

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds	Back alignment and domain information

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family	Back alignment and domain information

>TIGR00413 rlpA rare lipoprotein A	Back alignment and domain information

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK10672 rare lipoprotein A; Provisional	Back alignment and domain information

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		266
2hcz_X		245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		1e-20
1n10_A		241	Crystal Structure Of Phl P 1, A Major Timothy Grass		6e-15

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Back alignment and structure

Iteration: 1

Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 76/244 (31%), Positives = 106/244 (43%), Gaps = 30/244 (12%) Query: 38 GPWRLAHATFYGDE--SASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQI 95 G W A AT+YG + + GGACG N+ Y TA + +F +G CG+CY++ Sbjct: 17 GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76 Query: 96 KCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGA---- 151 +C P C +T N P HFD+S AF + Sbjct: 77 RCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGLN 122 Query: 152 ---WKAGIVPVLFRRVPCIKPGGIRFAFQ----GNGYWLLVYVMNVAGGGDIASMWVKGT 204 GI+ V FRRV C P G + F N +L V V VA GDI M ++ Sbjct: 123 DKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDK 182 Query: 205 RTG-WISMSHNWGASYQAFATLGGQA-LSFKIQSYSTKETIIAYNVAPANWNVGLTYKSN 262 + W M +WGA ++ + S ++ S S K+ +IA +V PANW Y SN Sbjct: 183 LSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKK-VIAKDVIPANWRPDAVYTSN 241 Query: 263 VNFH 266 V F+ Sbjct: 242 VQFY 245

PyMOL of 2hcz

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		266
2hcz_X		245	Beta-expansin 1A; domain 1 is A beta barrel and do	1e-62
1n10_A		241	PHL P I, pollen allergen PHL P 1; plant allergen,	7e-56
3d30_A		208	YOAJ, expansin like protein; peptidoglycan associa	7e-52
1wc2_A		181	Endoglucanase; hydrolase, cellulase, cellulose, do	7e-27
2jnz_A		108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	3e-21
3ft1_A		100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	1e-19
1bmw_A		96	PHL P II, pollen allergen PHL P2; allergy, immunog	2e-17

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245	Back alignment and structure

 Score =  196 bits (498), Expect = 1e-62
 Identities = 74/244 (30%), Positives = 105/244 (43%), Gaps = 30/244 (12%)

Query: 38  GPWRLAHATFYG--DESASETMGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQI 95
           G W  A AT+YG  + + +   GGACG  N+    Y   TA  +  +F +G  CG+CY++
Sbjct: 17  GKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEV 76

Query: 96  KCYNSPHCYKYVPFTTVTATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGA---- 151
           +C   P C        +T  N  P                  HFD+S  AF  +      
Sbjct: 77  RCKEKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAFGSLAKPGLN 122

Query: 152 ---WKAGIVPVLFRRVPCIKPGGIRFAFQ----GNGYWLLVYVMNVAGGGDIASMWVKGT 204
                 GI+ V FRRV C  P G +  F      N  +L V V  VA  GDI  M ++  
Sbjct: 123 DKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDK 182

Query: 205 RTG-WISMSHNWGASYQAFATL-GGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYKSN 262
            +  W  M  +WGA ++           S ++ S  + + +IA +V PANW     Y SN
Sbjct: 183 LSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTS-ESGKKVIAKDVIPANWRPDAVYTSN 241

Query: 263 VNFH 266
           V F+
Sbjct: 242 VQFY 245

PyMOL of 2hcz

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241	Back alignment and structure

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208	Back alignment and structure

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181	Back alignment and structure

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108	Back alignment and structure

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100	Back alignment and structure

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		266
2hcz_X		245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A		241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A		208	YOAJ, expansin like protein; peptidoglycan associa	100.0
1wc2_A		181	Endoglucanase; hydrolase, cellulase, cellulose, do	100.0
3ft1_A		100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.96
2jnz_A		108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.94
1bmw_A		96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.92
1bw3_A		125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.67
4avr_A		95	PA4485; unknown function, GRAM-negative bacteria,	99.28
3sul_A		122	Cerato-platanin-like protein; double PSI beta barr	98.04
2kqa_A		129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.0
3m3g_A		120	EPL1 protein; fungal, plant defense, fungus, polys	97.98
3suj_A		127	Cerato-platanin 1; double PSI beta barrel, unknown	97.86
3suk_A		125	Cerato-platanin-like protein; double PSI beta barr	97.79
3sum_A		136	Cerato-platanin-like protein; double PSI beta barr	97.67
2eng_A		210	Endoglucanase V; cellulose degradation, hydrolase	94.66

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=4.2e-66  Score=462.46  Aligned_cols=214  Identities=36%  Similarity=0.623  Sum_probs=199.6

Q ss_pred             CCCceEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEechhccCCCCcCCceEEEEeCCCCcccCCCCeEEEEE
Q 024520           37 PGPWRLAHATFYGDESASET--MGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVTA  114 (266)
Q Consensus        37 ~~~w~~g~aT~Yg~~~~~g~--~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~C~~~~~sv~V~i  114 (266)
                      .++|++|+||||+++++.++  ++|||||++++..|++.++||+|+.+|++|..||+||||+|.+++.|..  ++|+|+|
T Consensus        16 ~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~~~C~~--~sv~V~V   93 (245)
T 2hcz_X           16 NGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEKPECSG--NPVTVYI   93 (245)
T ss_dssp             CCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSSSSBCS--SCEEEEE
T ss_pred             CCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCCCccCC--CCEEEEE
Confidence            46799999999999998887  8999999998888899999999999999999999999999998788975  4899999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhcc-------ccCCeeEEEEEEeecCCCC--CeeEEEc--CCCceE
Q 024520          115 TNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGA-------WKAGIVPVLFRRVPCIKPG--GIRFAFQ--GNGYWL  183 (266)
Q Consensus       115 tD~CP~~~~~~~~~~~~C~~~~~hfDLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g--~i~~~v~--sn~~w~  183 (266)
                      ||+||            |++++.|||||+.||.+||+       ++.|+|+|+||||+|+++|  ||+|+++  ||+||+
T Consensus        94 tD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~Gs~~~~~  161 (245)
T 2hcz_X           94 TDMNY------------EPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYL  161 (245)
T ss_dssp             EEECC------------CTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECCCCSSSCC
T ss_pred             EeccC------------CCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcCCCCcceE
Confidence            99998            54568999999999999999       7899999999999999984  6999998  799999


Q ss_pred             EEEEEecCCCcceEEEEEEecCc-ceEEccCCCCceEEeccC--CCCCceEEEEEEccCCeEEEEceeeCCCCCCCcEEe
Q 024520          184 LVYVMNVAGGGDIASMWVKGTRT-GWISMSHNWGASYQAFAT--LGGQALSFKIQSYSTKETIIAYNVAPANWNVGLTYK  260 (266)
Q Consensus       184 ~v~v~n~~G~~~I~sVeV~~~~~-~W~~m~r~~g~~W~~~~~--l~g~p~s~RvTs~~~G~~i~~~~viP~~w~~G~ty~  260 (266)
                      +|+|.|++|+++|++|||+++++ .|++|+|+|||+|+++..  |.+ ||+||||+.+ ||+|++.||||++|++|+||+
T Consensus       162 avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~-G~~v~~~nViP~~w~~g~ty~  239 (245)
T 2hcz_X          162 AVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSES-GKKVIAKDVIPANWRPDAVYT  239 (245)
T ss_dssp             CEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETT-SCEEEESCSCCSSCCTTCEEE
T ss_pred             EEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeC-CcEEEEeeeecCCCCCCCEEe
Confidence            99999999999999999999876 799999999999999875  666 9999999999 999999999999999999999


Q ss_pred             cCcccC
Q 024520          261 SNVNFH  266 (266)
Q Consensus       261 ~~~qf~  266 (266)
                      +++||+
T Consensus       240 ~~~qf~  245 (245)
T 2hcz_X          240 SNVQFY  245 (245)
T ss_dssp             CSCCCC
T ss_pred             CccccC
Confidence            999994

PyMOL of 2hcz

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3	Back alignment and structure

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A	Back alignment and structure

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1	Back alignment and structure

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A	Back alignment and structure

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}	Back alignment and structure

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A	Back alignment and structure

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A	Back alignment and structure

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}	Back alignment and structure

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}	Back alignment and structure

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}	Back alignment and structure

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}	Back alignment and structure

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}	Back alignment and structure

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}	Back alignment and structure

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}	Back alignment and structure

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		266
d1wc2a1		180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	1e-43
d1n10a2		143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	9e-40
d1n10a1		95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	2e-24
d1whoa_		94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	2e-18

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180	Back information, alignment and structure


class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  144 bits (364), Expect = 1e-43
 Identities = 35/170 (20%), Positives = 48/170 (28%), Gaps = 37/170 (21%)

Query: 40  WRLAHATFYGDESASETMGGACGYGNL-----FSNGYGTDTAALSSTLFNN------GYA 88
              A  T Y D     +  GACG G       F    G+  AA S   F++      G  
Sbjct: 14  KSCASTTNYHD-----SHKGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQH 68

Query: 89  CGTCYQIKCYNSPHCYKYVPFT-----TVTATNLCPPNWSQDSNNGGWCNPPRA------ 137
           CG C ++         +  P       T   TNLCP  +     N  WCN          
Sbjct: 69  CGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIY----PNQDWCNQGSQYGGHNK 124

Query: 138 -----HFDMSKPAFMKIGAWKAGIVPVLFRRVPCIKPGGIRFAFQGNGYW 182
                H D+      ++           +  V C            N  +
Sbjct: 125 YGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMY 173

PyMOL of d1wc2a1

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143	Back information, alignment and structure

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95	Back information, alignment and structure

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		266
d1n10a2		143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1		180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	100.0
d1n10a1		95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.95
d1whoa_		94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.93
d1bw3a_		125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.55
d2enga_		210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	93.85

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=9.6e-38  Score=256.39  Aligned_cols=122  Identities=31%  Similarity=0.567  Sum_probs=103.5

Q ss_pred             CCCCceEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEechhccCCCCcCCceEEEEeCCCCcccCCCCeEEEE
Q 024520           36 RPGPWRLAHATFYGDESASET--MGGACGYGNLFSNGYGTDTAALSSTLFNNGYACGTCYQIKCYNSPHCYKYVPFTTVT  113 (266)
Q Consensus        36 ~~~~w~~g~aT~Yg~~~~~g~--~~GACGyg~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~C~~~~~sv~V~  113 (266)
                      ..++|++|+||||+++++.++  .+|||||++++..|++.++||+|+.+|++|..||+||||+|.++++|.++  +|+|+
T Consensus        13 ~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~~~c~~~--sv~V~   90 (143)
T d1n10a2          13 YGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKPEACSGE--PVVVH   90 (143)
T ss_dssp             CCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSSTTBCSC--CEEEE
T ss_pred             cCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCCCcccCC--CEEEE
Confidence            357899999999999887664  47999999988889999999999999999999999999999998899754  89999


Q ss_pred             EecCCCCCCCCCCCCCCCCCCCCCceeeChHHHHhhccc-------cCCeeEEEEEEeecCCCCC
Q 024520          114 ATNLCPPNWSQDSNNGGWCNPPRAHFDMSKPAFMKIGAW-------KAGIVPVLFRRVPCIKPGG  171 (266)
Q Consensus       114 itD~CP~~~~~~~~~~~~C~~~~~hfDLs~~AF~~ia~~-------~~G~v~i~~r~V~C~~~g~  171 (266)
                      |||.||+           |. +..|||||+.||.+||+.       +.|+|+|+||||+|+++|+
T Consensus        91 vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          91 ITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             EEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             EEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence            9999996           33 358999999999999984       6899999999999999874

PyMOL of d1n10a2

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}	Back information, alignment and structure

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}	Back information, alignment and structure

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	Back information, alignment and structure

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}	Back information, alignment and structure