Citrus Sinensis ID: 024594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcEEEEEcccccccHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEccccccccccccccccccccccccccHHEccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mfamnpqplqarpyidteehdvaqtpipiqngskqgdrydepeevedeagassvnrksndrggssvqsststrtseltvayegevyvfpavtPHKVQALLLLLgecdipstvpssafaqpqnimsggsasngskLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQrkngqftsskATFNIasansnpsngsappesVSRICqhcgisekltpamrrgpagprtlcnacglmwankgtlrdltkgarnICFEQHELVCIL
Flexible Loop (DISEMBL)
mfamnpqplQARPYIDTEEHDVAqtpipiqngskqgdrYDEPEEVEdeagassvnrksndrggssvqsststrtseLTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNImsggsasngsklSQRIASLVrfrekrkersfekkiryscrKEVAqrmqrkngqftssKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Low Complexity Region (SEG)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGssvqsststrtsELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVrfrekrkersfekkIRYSCRKEVAQRMQRKNGQFTSSKATFNIasansnpsngsappesVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Disordered region (IsUnstruct)
****************************************************************************LTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPS***********************************************************************************************ICQHCGIS************GPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCI*
Disordered Region (DISOPRED)
******************************************************************************VAYEGEVYVFPAVTPHKVQA*******************************************************************************TSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW********************HELVCIL
Disordered Region (DISEMBL)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNG*******************************************ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMS*********LSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN*************SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Disordered Region (DISPRO)
*************************P**********************************************RTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDI****************************QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQ***********************************C**C*ISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q8GXL7	297	GATA transcription factor	yes	no	0.656	0.585	0.551	6e-50
Q8H1G0	302	GATA transcription factor	no	no	0.747	0.655	0.493	1e-47
Q9LRH6	309	GATA transcription factor	no	no	0.652	0.559	0.531	2e-41
Q93WK5	727	Two-component response re	no	no	0.188	0.068	0.52	2e-07
A2YQ93	742	Two-component response re	N/A	no	0.158	0.056	0.5	2e-06
Q0D3B6	742	Two-component response re	no	no	0.158	0.056	0.5	3e-06
Q55C49	1006	GATA zinc finger domain-c	yes	no	0.124	0.032	0.628	4e-06
Q00858	457	Cutinase gene palindrome-	N/A	no	0.128	0.074	0.555	4e-06
Q9LVG4	495	Two-component response re	no	no	0.226	0.121	0.453	4e-06
Q9LKL2	618	Two-component response re	no	no	0.203	0.087	0.444	4e-06

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  197 bits (501), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 102/185 (55%), Positives = 132/185 (71%), Gaps = 11/185 (5%)

Query: 75  SELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSK 134
            +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +
Sbjct: 78  DQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQR 137

Query: 135 LS--QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSN 192
           LS  QR+ASL+RFREKRK R+F+K IRY+ RKEVA RMQRK GQFTS+K++ N  S ++ 
Sbjct: 138 LSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTG 196

Query: 193 PSNGSAPPESVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
              GS    +V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTL
Sbjct: 197 SDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTL 256

Query: 245 RDLTK 249
           RDL+K
Sbjct: 257 RDLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 142/219 (64%), Gaps = 21/219 (9%)

Query: 58  SNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAF 117
           +++RG   V    S +  +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    
Sbjct: 67  TDNRG--EVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLG 124

Query: 118 AQPQN--IMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNG 175
           +  QN  + S         + QR+ASLVRFREKRK R+F+KKIRY+ RKEVA RMQR  G
Sbjct: 125 SPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKG 184

Query: 176 QFTSSKATFNIASANSNPSNGS----------APPESVSRICQHCGISEKLTPAMRRGPA 225
           QFTS+K+  N  +A++  S GS          A  + +S  C+HCGI EK TP MRRGPA
Sbjct: 185 QFTSAKSN-NDEAASAGSSWGSNQTWAIESSEAQHQEIS--CRHCGIGEKSTPMMRRGPA 241

Query: 226 GPRTLCNACGLMWANKGTLRDLTKG----ARNICFEQHE 260
           GPRTLCNACGLMWANKG  RDL+K     A+N+   ++E
Sbjct: 242 GPRTLCNACGLMWANKGAFRDLSKASPQTAQNLPLNKNE 280

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/177 (53%), Positives = 112/177 (63%), Gaps = 4/177 (2%)

Query: 75  SELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSA-FAQPQNIMSGGSASNGS 133
           ++LT+++ G+VYVF AV   KV A+L LLG     +  P     AQ QN M      +  
Sbjct: 82  NQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQSRC 141

Query: 134 KLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASANSNP 193
            L QR  SL RFR+KR  R FEKK+RY  R+EVA RM R  GQFTSSK T    + NS  
Sbjct: 142 SLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMT--DGAYNSGT 199

Query: 194 SNGSAPPESVSRI-CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
              SA  ++   I C HCGIS K TP MRRGP+GPRTLCNACGL WAN+GTLRDL+K
Sbjct: 200 DQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGTLRDLSK 256

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 36/50 (72%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKA 182
           +K+SQR A+L +FR+KRKER F KK+RY  RK++A++  R  GQF    A
Sbjct: 664 NKISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTA 713

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 32/42 (76%)

Query: 137 QRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
            R+A++++FR+KRKER+F KK+RY  RK +A++  R  GQF 
Sbjct: 681 HRVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q55C49|GTAG_DICDI GATA zinc finger domain-containing protein 7 OS=Dictyostelium discoideum GN=gtaG PE=4 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 25/35 (71%), Gaps = 2/35 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241
           C +CG   K TP  RRGP+GP TLCNACGL +A K
Sbjct: 842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

Dictyostelium discoideum (taxid: 44689)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241
           +C  CG  +  +P  R+GP+GP+TLCNACGL WA K
Sbjct: 401 VCTDCGTLD--SPEWRKGPSGPKTLCNACGLRWAKK 434

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 4/64 (6%)

Query: 114 SSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRK 173
           SS+   P    S GS     + +QR A+L++FR KRKER FEKK+RY  RK++A++    
Sbjct: 422 SSSSDNPLKQQSSGS----DRWAQREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHV 477

Query: 174 NGQF 177
            GQF
Sbjct: 478 KGQF 481

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LKL2|APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 133 SKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNI 186
           +KL +R  +L++FR KR +R F+KKIRY  RK +A+R  R  GQF       N+
Sbjct: 528 NKLDRREEALLKFRRKRNQRCFDKKIRYVNRKRLAERRPRVKGQFVRKMNGVNV 581

Controls photoperiodic flowering response. Component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock. Positive regulator of CCA1 and LHY expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
359494710	371	PREDICTED: GATA transcription factor 28-	0.973	0.695	0.583	6e-76
224095790	274	predicted protein [Populus trichocarpa]	0.833	0.806	0.627	1e-70
224141135	368	predicted protein [Populus trichocarpa]	0.724	0.521	0.687	6e-70
255572874	327	GATA transcription factor, putative [Ric	0.947	0.767	0.577	7e-70
356528009	358	PREDICTED: GATA transcription factor 24-	0.743	0.550	0.656	2e-68
359492959	368	PREDICTED: GATA transcription factor 24-	0.916	0.660	0.548	5e-68
356519473	1174	PREDICTED: dynamin-related protein 3A-li	0.743	0.167	0.656	1e-67
302142082	324	unnamed protein product [Vitis vinifera]	0.803	0.657	0.612	1e-65
357476233	334	GATA transcription factor [Medicago trun	0.713	0.565	0.652	8e-63
449469793	328	PREDICTED: GATA transcription factor 24-	0.939	0.759	0.529	2e-62

>gi|359494710|ref|XP_002268872.2| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 153/262 (58%), Positives = 185/262 (70%), Gaps = 4/262 (1%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQ-NGSKQGDRYDEPEEVEDEAGASSVNRKSN 59
           M  +NP+PLQA P+   EEHD     +PI+ NG++ G   ++      EA +     + +
Sbjct: 1   METVNPRPLQALPF---EEHDDDSMQVPIEINGNEGGFEVEDVTGGGGEAVSGGEGGRMS 57

Query: 60  DRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQ 119
                   S  + RTSELT+++EGEVYVF AVTP KVQA+LLLLG  + PS+V SS F  
Sbjct: 58  SVNADEKSSVVAQRTSELTISFEGEVYVFHAVTPDKVQAVLLLLGGHETPSSVSSSEFLL 117

Query: 120 PQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTS 179
            QN+     AS  S L +RIASL+RFREKRKER FEKKIRY+CRKEVAQRM RKNGQF S
Sbjct: 118 QQNMKGLVDASKCSNLPRRIASLIRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFAS 177

Query: 180 SKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWA 239
            K +F +A+ N +PS+G+  PE V R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWA
Sbjct: 178 VKESFKMATGNWDPSSGTPCPEYVFRRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWA 237

Query: 240 NKGTLRDLTKGARNICFEQHEL 261
           NKGTLRDL+KG+R I F Q EL
Sbjct: 238 NKGTLRDLSKGSRMIPFGQDEL 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095790|ref|XP_002310481.1| predicted protein [Populus trichocarpa] gi|222853384|gb|EEE90931.1| predicted protein [Populus trichocarpa]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/223 (62%), Positives = 157/223 (70%), Gaps = 2/223 (0%)

Query: 45  VEDEAGASSVNRKSNDRGGSSVQSST--STRTSELTVAYEGEVYVFPAVTPHKVQALLLL 102
           VE+E G  S N   N    S+       STRTSELT+A+EGEVYVFPAVTP KVQA+L L
Sbjct: 50  VEEEVGQFSANNNINGVVISNGNDGVFESTRTSELTIAFEGEVYVFPAVTPSKVQAVLFL 109

Query: 103 LGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSC 162
           LGE +  + VPSS +   QN  + G AS G K S+R+ASLVRFREKRKER FEKK+RY+C
Sbjct: 110 LGEPETSTIVPSSEYLLQQNARNAGDASQGLKHSRRVASLVRFREKRKERCFEKKVRYTC 169

Query: 163 RKEVAQRMQRKNGQFTSSKATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRR 222
           RKEVAQ+M RK GQF S    +   + N  PSNG   PE     CQHCGIS K TPAMRR
Sbjct: 170 RKEVAQKMHRKRGQFASLNNCYGTDTGNWEPSNGMRNPEFDLLRCQHCGISAKDTPAMRR 229

Query: 223 GPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHELVCIL 265
           GPAGPRTLCNACGLMWANKGTLRDL KG R I F Q+E VCI 
Sbjct: 230 GPAGPRTLCNACGLMWANKGTLRDLNKGGRQISFNQNEPVCIF 272

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141135|ref|XP_002323930.1| predicted protein [Populus trichocarpa] gi|222866932|gb|EEF04063.1| predicted protein [Populus trichocarpa]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 132/192 (68%), Positives = 148/192 (77%)

Query: 71  STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSAS 130
           +TRTSELT+A+EGEVYVFPAVTP KVQA+L LLGE +  +  P+S F   QN  S G AS
Sbjct: 77  TTRTSELTIAFEGEVYVFPAVTPSKVQAVLFLLGEPETSTIAPNSDFFLQQNARSAGDAS 136

Query: 131 NGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIASAN 190
            G K S+RIASL RFREKRKER FEKK+RY+CRKEVAQRM RK GQF SS   ++  + N
Sbjct: 137 QGLKFSRRIASLERFREKRKERCFEKKVRYTCRKEVAQRMHRKKGQFASSNDCYSTDTGN 196

Query: 191 SNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
             PSN    PESV   CQHCGIS K TPAMRRGPAGPRTLCNACGLMWANKGTLRDL+KG
Sbjct: 197 WEPSNSMPNPESVLLRCQHCGISAKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKG 256

Query: 251 ARNICFEQHELV 262
            R+I F Q+E V
Sbjct: 257 GRHISFNQNEPV 268

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572874|ref|XP_002527369.1| GATA transcription factor, putative [Ricinus communis] gi|223533288|gb|EEF35041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  270 bits (689), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 153/265 (57%), Positives = 181/265 (68%), Gaps = 14/265 (5%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGS-KQGDRYDEPEEVEDEAGASS-VNRKS 58
           M A NP PLQARPY   E+H   Q PI I +   ++ +  D  ++VED    +S VN   
Sbjct: 1   MAAANPLPLQARPY---EDH--VQAPIQIDDDDVREYEDGDAMDDVEDNTPMNSGVNVAE 55

Query: 59  NDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFA 118
           +  GG  V S    RTSELT+++EGEV+VFPAVTP KVQA+LLLLG  DIP+ VP+    
Sbjct: 56  HGGGGVIVAS----RTSELTLSFEGEVFVFPAVTPEKVQAVLLLLGGRDIPTAVPTIEVP 111

Query: 119 QPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFT 178
             QN          S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM RKNGQF 
Sbjct: 112 CVQNNRGVDDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFA 171

Query: 179 SSKATFNIASANSNPS---NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACG 235
           S K +   +S +S  S   +G+  PE+V R CQHCG+SE  TPAMRRGPAGPRTLCNACG
Sbjct: 172 SLKESSGGSSWDSAQSCLQDGTPRPETVVRRCQHCGVSENNTPAMRRGPAGPRTLCNACG 231

Query: 236 LMWANKGTLRDLTKGARNICFEQHE 260
           LMWANKGTLRDL+KG RN   +Q E
Sbjct: 232 LMWANKGTLRDLSKGGRNASTDQIE 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528009|ref|XP_003532598.1| PREDICTED: GATA transcription factor 24-like [Glycine max]

 Score =  265 bits (676), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 153/201 (76%), Gaps = 4/201 (1%)

Query: 64  SSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN- 122
           ++  S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++P++ P+S F   QN 
Sbjct: 50  ANASSAMRARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMPNSAPTSDFLLQQNY 109

Query: 123 --IMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSS 180
             I      S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S 
Sbjct: 110 QDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASL 169

Query: 181 KATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240
           K  +   + N + SNG+  P+S  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWAN
Sbjct: 170 KEDYKSPAENWDSSNGTPCPDSTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWAN 229

Query: 241 KGTLRDLTKGARNICFEQHEL 261
           KGTLRDL+K  R I FEQ+EL
Sbjct: 230 KGTLRDLSKAGR-IAFEQNEL 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492959|ref|XP_002283738.2| PREDICTED: GATA transcription factor 24-like [Vitis vinifera]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 153/279 (54%), Positives = 178/279 (63%), Gaps = 36/279 (12%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPIQNGSKQGDRYDEPEEVEDEAGASSVNRKSN- 59
           M   NPQPLQARP+   E+H   Q PI I         +D+  + E + GAS+    +  
Sbjct: 1   MAMANPQPLQARPF---EDH--MQIPIQI---------HDDDADFEVDGGASAPADDAMD 46

Query: 60  --------------DRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
                         D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLLLG 
Sbjct: 47  DVDDDPHINSINPIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLLLGG 102

Query: 106 CDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKE 165
            DIP+ VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ RKE
Sbjct: 103 RDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKE 162

Query: 166 VAQRMQRKNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRR 222
           VAQRM RKNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPAMRR
Sbjct: 163 VAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPAMRR 222

Query: 223 GPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261
           GPAGPRTLCNACGLMWANKGTLRDL+KG RN+  +Q EL
Sbjct: 223 GPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIEL 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519473|ref|XP_003528397.1| PREDICTED: dynamin-related protein 3A-like [Glycine max]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 132/201 (65%), Positives = 152/201 (75%), Gaps = 4/201 (1%)

Query: 64  SSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN- 122
           ++  S+   R SELT+++EGEVYVFPAVTP KVQA+LLLLG  ++ ++ P+S     QN 
Sbjct: 47  TNASSAMHARASELTISFEGEVYVFPAVTPEKVQAVLLLLGAQEMTNSAPTSDILLQQNY 106

Query: 123 --IMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSS 180
             I      S  SKLS+R ASLVRFREKRKER FEKKIRYSCRKEVAQRM RKNGQF S 
Sbjct: 107 QDIREINDPSRSSKLSRRFASLVRFREKRKERCFEKKIRYSCRKEVAQRMHRKNGQFASM 166

Query: 181 KATFNIASANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN 240
           K  +   + N + SNG+  PES  R CQHCGISEK TPAMRRGPAGPR+LCNACGLMWAN
Sbjct: 167 KEDYKSPAENWDSSNGTPCPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWAN 226

Query: 241 KGTLRDLTKGARNICFEQHEL 261
           KGTLRDL+K AR I FEQ+EL
Sbjct: 227 KGTLRDLSKAAR-IAFEQNEL 246

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142082|emb|CBI19285.3| unnamed protein product [Vitis vinifera]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 136/222 (61%), Positives = 159/222 (71%), Gaps = 9/222 (4%)

Query: 43  EEVEDEAGASSVNRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLL 102
           ++V+D+   +S+N    D  G  V S    RTSELT+A+EGEVYVFPAVTP KVQA+LLL
Sbjct: 2   DDVDDDPHINSIN--PIDHAGVVVAS----RTSELTLAFEGEVYVFPAVTPEKVQAVLLL 55

Query: 103 LGECDIPSTVPSSAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSC 162
           LG  DIP+ VP+      Q+    G     S LS+RIASLVRFREKRKER F+KKIRY+ 
Sbjct: 56  LGGRDIPTGVPTIEVPFDQSNRGVGDLPKRSNLSRRIASLVRFREKRKERCFDKKIRYTV 115

Query: 163 RKEVAQRMQRKNGQFTSSKAT---FNIASANSNPSNGSAPPESVSRICQHCGISEKLTPA 219
           RKEVAQRM RKNGQF S K +    N  SA S   + +  PE+V R CQHCG+SE  TPA
Sbjct: 116 RKEVAQRMHRKNGQFASLKESSGPSNWDSAQSLQGDTTPRPETVLRRCQHCGVSENSTPA 175

Query: 220 MRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL 261
           MRRGPAGPRTLCNACGLMWANKGTLRDL+KG RN+  +Q EL
Sbjct: 176 MRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLSLDQIEL 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476233|ref|XP_003608402.1| GATA transcription factor [Medicago truncatula] gi|355509457|gb|AES90599.1| GATA transcription factor [Medicago truncatula]

 Score =  246 bits (628), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 126/193 (65%), Positives = 145/193 (75%), Gaps = 4/193 (2%)

Query: 72  TRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN---IMSGGS 128
           +R SELT+++EGEVYVFP+VTP KVQA+LLLL   +  ++VP+S F   QN   I     
Sbjct: 39  SRASELTISFEGEVYVFPSVTPEKVQAVLLLLDGKETRNSVPTSDFPVQQNCRDIWGKND 98

Query: 129 ASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSKATFNIAS 188
               SK+S+R ASLVRFREKRKER FEKKIRY+CRKEVA+RMQRKNGQF S K   +  +
Sbjct: 99  PFRNSKVSRRSASLVRFREKRKERCFEKKIRYTCRKEVAERMQRKNGQFASLKEECSSPA 158

Query: 189 ANSNPSNGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
            N + SNGS  PES+ R CQHCGI+ K TP MRRGPAGPRTLCNACGLMWANKGTLRDL 
Sbjct: 159 ENQDFSNGSPFPESIERRCQHCGIAAKSTPVMRRGPAGPRTLCNACGLMWANKGTLRDLG 218

Query: 249 KGARNICFEQHEL 261
           K  R I FEQ EL
Sbjct: 219 KAGR-IAFEQTEL 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469793|ref|XP_004152603.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus] gi|449511418|ref|XP_004163951.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  244 bits (624), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 142/268 (52%), Positives = 170/268 (63%), Gaps = 19/268 (7%)

Query: 1   MFAMNPQPLQARPYIDTEEHDVAQTPIPI------QNGSKQGDRYDEPEEVEDEAGASSV 54
           M A NPQPLQARP+   +EH   Q P  +            G    +  +  +EA  +SV
Sbjct: 1   MAAANPQPLQARPF---QEH--VQVPSMMADDDGEYEDGGGGGGGGDVMDDVEEAHMTSV 55

Query: 55  NRKSNDRGGSSVQSSTSTRTSELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPS 114
           +  ++   G  V +S   R SELT+++EGEVYVFP VTP KVQA+LLLLG  D+P+ VP+
Sbjct: 56  SVANH---GGLVMAS---RASELTLSFEGEVYVFPEVTPEKVQAVLLLLGGRDVPADVPT 109

Query: 115 SAFAQPQNIMSGGSASNGSKLSQRIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKN 174
                  N          S LS+RIASLVRFREKRKER F+KKIRY+ RKEVAQRM RKN
Sbjct: 110 MEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKN 169

Query: 175 GQFTSSKATFNIASANSNPS--NGSAPPESVSRICQHCGISEKLTPAMRRGPAGPRTLCN 232
           GQF S K +   +S  S  S        E+V R CQHCG+SE  TPAMRRGPAGPRTLCN
Sbjct: 170 GQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCN 229

Query: 233 ACGLMWANKGTLRDLTKGARNICFEQHE 260
           ACGLMWANKGTLRDL+KG RN+  +  E
Sbjct: 230 ACGLMWANKGTLRDLSKGGRNVSLDHME 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.652	0.582	0.483	2.4e-37
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.698	0.612	0.439	3.1e-35
TAIR|locus:2076191	274	GATA1 "GATA transcription fact	0.128	0.124	0.638	9.1e-06
TAIR|locus:2103346	240	GATA4 "GATA transcription fact	0.124	0.137	0.6	0.00032
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.124	0.032	0.628	0.00037
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.113	0.25	0.5	0.00039
DICTYBASE|DDB_G0277147	872	stkA "GATA zinc finger domain-	0.135	0.041	0.552	0.0004
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.154	0.092	0.543	0.00047
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.154	0.092	0.543	0.00047
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.113	0.215	0.531	0.00049

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 89/184 (48%), Positives = 114/184 (61%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQNIMSGGSASNGSKL 135
             +LT++++G+VYVF  V+P KVQA+LLLLG  ++P T+P++  +  QN    G +    +L
Sbjct:    79 QLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSGTPQRL 138

Query:   136 S--QRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
             S  QR+ASL+              IRY+ RKEVA RMQRK GQFTS+K++ N        
Sbjct:   139 SVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSS-NDDSGSTGS 197

Query:   194 XXXXXXXXXVSR--------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
                      V          +C+HCG SEK TP MRRGP GPRTLCNACGLMWANKGTLR
Sbjct:   198 DWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLR 257

Query:   246 DLTK 249
             DL+K
Sbjct:   258 DLSK 261

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 87/198 (43%), Positives = 111/198 (56%)

Query:    76 ELTVAYEGEVYVFPAVTPHKVQALLLLLGECDIPSTVPSSAFAQPQN--IMSGGSASNGS 133
             +LT++++G+VYVF +V P KVQA+LLLLG  ++P   P    +  QN  + S        
Sbjct:    83 QLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNRVSSLPGTPQRF 142

Query:   134 KLSQRIASLVXXXXXXXXXXXXXXIRYSCRKEVAQRMQRKNGQFTSSKATFNIXXXXXXX 193
              + QR+ASLV              IRY+ RKEVA RMQR  GQFTS+K+  +        
Sbjct:   143 SIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAASAGSS 202

Query:   194 XXXXXXXXXVSR-------ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRD 246
                       S         C+HCGI EK TP MRRGPAGPRTLCNACGLMWANKG  RD
Sbjct:   203 WGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKGAFRD 262

Query:   247 LTKG----ARNICFEQHE 260
             L+K     A+N+   ++E
Sbjct:   263 LSKASPQTAQNLPLNKNE 280

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2076191 GATA1 "GATA transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 23/36 (63%), Positives = 28/36 (77%)

Query:   203 VSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238
             + R CQHCG +EK TP  R GPAGP+TLCNACG+ +
Sbjct:   192 MGRKCQHCG-AEK-TPQWRAGPAGPKTLCNACGVRY 225

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2103346 GATA4 "GATA transcription factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 0.00032, P = 0.00032
 Identities = 21/35 (60%), Positives = 25/35 (71%)

Query:   204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMW 238
             +R C HC  SEK TP  R GP GP+TLCNACG+ +
Sbjct:   157 ARRCTHCA-SEK-TPQWRTGPLGPKTLCNACGVRY 189

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
 Identities = 22/35 (62%), Positives = 25/35 (71%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANK 241
             C +CG   K TP  RRGP+GP TLCNACGL +A K
Sbjct:   842 CHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKK 874

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00039, P = 0.00039
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236
             R C  C  ++  TP  R GP GP++LCNACG+
Sbjct:    26 RCCSECKTTK--TPMWRGGPTGPKSLCNACGI 55

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

DICTYBASE|DDB_G0277147 stkA "GATA zinc finger domain-containing protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
 Identities = 21/38 (55%), Positives = 26/38 (68%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKG 242
             R C+ CG S+  TP  RRGP+G  +LCNACG+ W  KG
Sbjct:   292 RSCEFCGSSQ--TPTWRRGPSGKGSLCNACGIKWRLKG 327

GO:0045595 "regulation of cell differentiation" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 25/46 (54%), Positives = 28/46 (60%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN---KGTLRDLTK 249
             CQHC   E  TP  RRGP G RTLCNACGL ++    K  LR+  K
Sbjct:   382 CQHCCSQE--TPEWRRGPEGSRTLCNACGLFYSKLIKKYGLREADK 425

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 113 (44.8 bits), Expect = 0.00047, P = 0.00047
 Identities = 25/46 (54%), Positives = 28/46 (60%)

Query:   207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWAN---KGTLRDLTK 249
             CQHC   E  TP  RRGP G RTLCNACGL ++    K  LR+  K
Sbjct:   382 CQHCCSQE--TPEWRRGPEGSRTLCNACGLFYSKLIKKYGLREADK 425

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 98 (39.6 bits), Expect = 0.00049, P = 0.00049
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query:   205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGL 236
             + C  CG S+  TP  R GP GP++LCNACG+
Sbjct:    36 KTCADCGTSK--TPLWRGGPVGPKSLCNACGI 65

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam06203	45	pfam06203, CCT, CCT motif	8e-16
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	6e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	4e-11
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-10
pfam06200	36	pfam06200, tify, tify domain	3e-05
smart00979	36	smart00979, TIFY, This short possible domain is fo	2e-04

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 69.2 bits (170), Expect = 8e-16
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK 181
           R A+L+R++EKRK R F+KKIRY+ RK VA+   R  G+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 61.6 bits (150), Expect = 6e-13
 Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKG 250
            C +CG +   TP  RRGP+G  TLCNACGL W   G +R L+K 
Sbjct: 1   ACSNCGTTT--TPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR 43

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 56.1 bits (136), Expect = 4e-11
 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL 244
           C +CG ++  TP  RRGP G RTLCNACGL +   G  
Sbjct: 1   CSNCGTTK--TPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLR 245
           R C +CG +E  TP  RRGP+G +TLCNACGL +   G L+
Sbjct: 4   RSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLG 104
           +++LT+ Y G+V VF  V P K Q ++ L  
Sbjct: 5   SAQLTIFYGGQVCVFDDVPPEKAQEIMRLAS 35

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 74  TSELTVAYEGEVYVFPAVTPHKVQALLLLLGE 105
           + +LT+ Y G V VF  V P K Q ++ L G 
Sbjct: 5   SQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.69
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.61
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.55
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.52
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.26
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.64
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.29
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.26
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	91.07
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	83.12

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.69  E-value=2.3e-17  Score=108.98  Aligned_cols=34  Identities=44%  Similarity=0.718  Sum_probs=32.2

Q ss_pred             CCCCcceeEEeccEEEEeCCCChhHHHHHHHHhc
Q 024594           71 STRTSELTVAYEGEVYVFPAVTPHKVQALLLLLG  104 (265)
Q Consensus        71 ~~~~aQLTIfY~G~V~Vfddvp~eKaq~Im~la~  104 (265)
                      ++.++||||||+|+|+|||+||+|||++||+||+
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~   35 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLAS   35 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence            5678999999999999999999999999999996

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.61  E-value=4e-16  Score=111.72  Aligned_cols=48  Identities=50%  Similarity=1.046  Sum_probs=42.6

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCC-CCcc
Q 024594          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA-RNIC  255 (265)
Q Consensus       206 ~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~-~~~~  255 (265)
                      .|+||+++  .||+||+||+|..+|||||||||++++.+|+..... ..+.
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~~~~~~   49 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQIK   49 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCcccccc
Confidence            49999998  599999999998999999999999999999988776 4443

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.55  E-value=2.2e-15  Score=106.98  Aligned_cols=46  Identities=50%  Similarity=1.014  Sum_probs=40.6

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC-CCCCCCC
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL-RDLTKGA  251 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~-r~~~~~~  251 (265)
                      ...|+||+++  .||+||+||.|..+|||||||+|++++.+ ++.....
T Consensus         3 ~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~   49 (52)
T smart00401        3 GRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKK   49 (52)
T ss_pred             CCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCcccccc
Confidence            4789999998  59999999999889999999999999988 7765443

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.52  E-value=2.3e-15  Score=99.33  Aligned_cols=36  Identities=56%  Similarity=1.199  Sum_probs=28.4

Q ss_pred             ccccccccCCCCccccCCCCCcccchhhhHHHHhcCCC
Q 024594          207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTL  244 (265)
Q Consensus       207 C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~  244 (265)
                      |.||+++  .||+||+||.|..+||||||++|++++++
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~~   36 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGKM   36 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS-
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCCC
Confidence            8999998  59999999999889999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.26  E-value=3.2e-12  Score=88.40  Aligned_cols=44  Identities=52%  Similarity=0.819  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHhhhhhccCCccccc
Q 024594          138 RIASLVRFREKRKERSFEKKIRYSCRKEVAQRMQRKNGQFTSSK  181 (265)
Q Consensus       138 R~~sl~r~~~Krk~r~~~k~i~Y~~RK~~A~~~~R~kGqFas~k  181 (265)
                      |.++|+||++||+.|.|.|+|+|.+||.+|+.++|.+|+|++..
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            67899999999999999999999999999999999999999764

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.64  E-value=1.6e-08  Score=87.95  Aligned_cols=46  Identities=48%  Similarity=0.998  Sum_probs=38.5

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCC
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGA  251 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~  251 (265)
                      ...|.+|+++  .||+||++|.|...||||||++|+++...+.+....
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~  244 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKR  244 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCccccccccC
Confidence            4799999997  599999999999999999999999997444444333

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.29  E-value=2.8e-07  Score=91.67  Aligned_cols=56  Identities=29%  Similarity=0.567  Sum_probs=46.1

Q ss_pred             ccccccccccccccCCCCccccCCCC----CcccchhhhHHHHhcCCCC-CCCCCCCCccccc
Q 024594          201 ESVSRICQHCGISEKLTPAMRRGPAG----PRTLCNACGLMWANKGTLR-DLTKGARNICFEQ  258 (265)
Q Consensus       201 ~~~~~~C~~C~~t~~~Tp~wR~Gp~g----~~~LCNaCGl~~~~~~~~r-~~~~~~~~~~~~~  258 (265)
                      +.+...|.||.++  .||+|||+..+    .-.|||||||+|+.|+++| |++.+...|+...
T Consensus       155 s~~~~vc~Nc~t~--stPlwrR~~~~~s~~~n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         155 SNQPHVCSNCKTT--STPLWRRASSESSLPGNNLCNACGLYLKLHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             ccccchhcccccc--CCccccccccccccCCccccccccccccccCCcCCCcccccccccccc
Confidence            3345599999998  69999999993    3899999999999999999 8777766555543

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.26  E-value=4e-07  Score=56.58  Aligned_cols=25  Identities=52%  Similarity=0.579  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHHhhhcccccccccc
Q 024594          136 SQRIASLVRFREKRKERSFEKKIRYS  161 (265)
Q Consensus       136 ~~R~~sl~r~~~Krk~r~~~k~i~Y~  161 (265)
                      .+|++||+||+||||+|..+ +.+|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            37999999999999999888 68885

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=91.07  E-value=0.11  Score=52.49  Aligned_cols=52  Identities=23%  Similarity=0.200  Sum_probs=44.0

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCccc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICF  256 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~  256 (265)
                      ...|.+|++. +.||.||+...-.-.+|||||++-+..+.++++.++.....+
T Consensus       297 ~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~d~n~~  348 (498)
T COG5641         297 DKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSK  348 (498)
T ss_pred             hcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCCChhhh
Confidence            4578888875 469999999888899999999999999999998887665554

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=83.12  E-value=1.5  Score=44.15  Aligned_cols=47  Identities=23%  Similarity=0.503  Sum_probs=34.2

Q ss_pred             CCCCCCccccccccccccccCCCCcccc--CCCCCcccchhhhHHHHhcCC
Q 024594          195 NGSAPPESVSRICQHCGISEKLTPAMRR--GPAGPRTLCNACGLMWANKGT  243 (265)
Q Consensus       195 ~~~~~~~~~~~~C~~C~~t~~~Tp~wR~--Gp~g~~~LCNaCGl~~~~~~~  243 (265)
                      +|........+.|-+|+++  +.-+|=.  +|.-...||..|=+||+|.+-
T Consensus       377 ~gtt~~~~~g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  377 NGTTFQNQDGRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             ccccccCCCCCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            3433433336799999998  4667754  455556999999999999874

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-10
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	9e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	9e-07
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	1e-06
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 54.9 bits (132), Expect = 2e-10
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
              S  C +C ++E  T   R   +     CNAC +        R +T
Sbjct: 5   NKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQRKYNKTRPVT 50

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 52.0 bits (125), Expect = 9e-10
 Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 202 SVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK 249
           S +R C +CG +   TP  RR   G   LCNACGL     G  R L +
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 44.0 bits (104), Expect = 9e-07
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
             C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 42

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 201 ESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           ++    C +C      TP  RR P G + LCNACGL     G +R L+     I
Sbjct: 6   QNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVI 56

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 198 APPESVSRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
           +        C +C  +   T   RR   G   +CNACGL +      R LT     I
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGI 54

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.72
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.72
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.71
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.71
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.6
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.55
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.37
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	97.89
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	97.69

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.72  E-value=2.5e-18  Score=125.69  Aligned_cols=54  Identities=30%  Similarity=0.540  Sum_probs=48.2

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCccccccc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE  260 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~  260 (265)
                      ...|+||+++  .||+||+||+|. +|||||||+|++++.+||++..+..|+.+...
T Consensus         7 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk   60 (63)
T 3dfx_A            7 GTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRK   60 (63)
T ss_dssp             TCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC--
T ss_pred             CCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCC
Confidence            5789999998  599999999997 99999999999999999999988888877654

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.72  E-value=2.6e-18  Score=118.38  Aligned_cols=43  Identities=44%  Similarity=0.832  Sum_probs=40.0

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCC
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTK  249 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~  249 (265)
                      ...|+||+++  +||+||+||+|. +|||||||||++++++||++|
T Consensus         4 ~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            4 ARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             SCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            4689999998  599999999996 999999999999999999875

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.71  E-value=2.9e-18  Score=116.59  Aligned_cols=41  Identities=44%  Similarity=0.878  Sum_probs=38.5

Q ss_pred             ccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCC
Q 024594          205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (265)
Q Consensus       205 ~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~  248 (265)
                      ..|++|+++  .||+||+||+|. +|||||||+|++++++||++
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~   42 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLS   42 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCC
Confidence            579999998  599999999996 99999999999999999986

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.71  E-value=3.7e-18  Score=125.86  Aligned_cols=55  Identities=35%  Similarity=0.617  Sum_probs=49.8

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcccccccc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~  261 (265)
                      ...|+||+++  .||+||+||+|. +|||||||||++++++||++.....|+.+....
T Consensus         9 ~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~R~~   63 (66)
T 4gat_A            9 PTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRNRNS   63 (66)
T ss_dssp             SCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCCCSC
T ss_pred             CCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccccCC
Confidence            5799999998  599999999996 999999999999999999999988888776543

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.60  E-value=2e-16  Score=118.14  Aligned_cols=47  Identities=23%  Similarity=0.328  Sum_probs=40.4

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCC
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGAR  252 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~  252 (265)
                      ...|+||+++  .||+||+||.+..+|||||||||++++++||++....
T Consensus         8 ~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~   54 (71)
T 2kae_A            8 SFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNK   54 (71)
T ss_dssp             CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHH
T ss_pred             CCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchh
Confidence            5799999998  5999999655445999999999999999999876654

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.55  E-value=2.6e-15  Score=121.52  Aligned_cols=55  Identities=29%  Similarity=0.550  Sum_probs=48.6

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcccccccc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHEL  261 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~~  261 (265)
                      ...|+||+++  .||+||+||+| .+|||||||||++++.+|+++..+..|..+...+
T Consensus        59 ~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           59 GTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             TCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             cccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            4799999998  59999999999 8999999999999999999999998888776543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.37  E-value=2.8e-13  Score=109.54  Aligned_cols=49  Identities=43%  Similarity=0.769  Sum_probs=42.5

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCcc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNIC  255 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~  255 (265)
                      .+.|.||+++  .||+||+||+| .+|||||||||++++.++++.+.+....
T Consensus         5 ~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~   53 (115)
T 4hc9_A            5 GRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLS   53 (115)
T ss_dssp             -CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCC
T ss_pred             CCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhccccccccccccccc
Confidence            5799999998  59999999999 7999999999999999999876655433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	3e-10
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	1e-09
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	1e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (125), Expect = 3e-10
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT 243
           R C +CG +   TP  RR   G   LCNACGL     G 
Sbjct: 3   RECVNCGATA--TPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)

Query: 207 CQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT 248
           C +C      TP  RR P G + LCNACGL     G +R L+
Sbjct: 3   CTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS 41

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 205 RICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNI 254
            +C +C  S   T   RR P G   +CNACGL +      R LT     I
Sbjct: 5   TVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGI 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.75
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.7
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.69

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.75  E-value=1.4e-19  Score=120.32  Aligned_cols=40  Identities=45%  Similarity=0.916  Sum_probs=37.9

Q ss_pred             cccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCC
Q 024594          206 ICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLT  248 (265)
Q Consensus       206 ~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~  248 (265)
                      .|+||+++  +||+||+||+| ++|||||||||++++++||++
T Consensus         2 ~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~s   41 (42)
T d2vuti1           2 TCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLS   41 (42)
T ss_dssp             CCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCC
T ss_pred             cCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCC
Confidence            69999998  59999999999 799999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=3.6e-18  Score=124.12  Aligned_cols=54  Identities=33%  Similarity=0.613  Sum_probs=46.8

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCCCCCCCCCCCCccccccc
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGTLRDLTKGARNICFEQHE  260 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~~r~~~~~~~~~~~~~~~  260 (265)
                      ...|+||+++  .||+||+||+| .+|||||||||++++.+||+......|......
T Consensus         4 g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~   57 (66)
T d3gata_           4 GTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRK   57 (66)
T ss_dssp             TCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCC
T ss_pred             CCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCC
Confidence            4689999998  59999999999 799999999999999999988777666655443

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.3e-18  Score=112.74  Aligned_cols=37  Identities=46%  Similarity=0.918  Sum_probs=34.1

Q ss_pred             cccccccccccCCCCccccCCCCCcccchhhhHHHHhcCC
Q 024594          204 SRICQHCGISEKLTPAMRRGPAGPRTLCNACGLMWANKGT  243 (265)
Q Consensus       204 ~~~C~~C~~t~~~Tp~wR~Gp~g~~~LCNaCGl~~~~~~~  243 (265)
                      .+.|+||+++  .||+||+||+| ++|||||||||+++++
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            3689999998  59999999999 6999999999999986