Citrus Sinensis ID: 024640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEEEccccccccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccHHHHHHHHHHHccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNrgklyefcsspsimktleryhrcsfgaheanrppietqsTYQEYLRLKTAVELLQRSQRNllgedldplsTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLrkkaflgnytclttppftqldesniahqvpphrLAWEAASagqnitynrypvqsegffqplsggtpilqigynpmgseeahipvhaqnvtgfipgwml
Flexible Loop (DISEMBL)
mgrgrvelkrienkinrqvtfakrrngLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFgaheanrppietQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML
Low Complexity Region (SEG)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML
Disordered region (IsUnstruct)
*************KINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHE*********STYQEYLRLKTAVELLQ***************************************CMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGW**
Disordered Region (DISOPRED)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYH********************QEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKA**********************************************************GGTPILQIGY*******************FIPGWML
Disordered Region (DISEMBL)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML
Disordered Region (DISPRO)
*****VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTC****************************************VQSEGFFQPLSGGTPILQIGYNPMGS********************L
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKExxxxxxxxxxxxxxxxxxxxxCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
Q39685	233	MADS-box protein CMB1 OS=	N/A	no	0.860	0.978	0.574	2e-77
P29382	251	Developmental protein SEP	yes	no	0.932	0.984	0.587	2e-75
P29384	250	Developmental protein SEP	no	no	0.920	0.976	0.568	6e-74
Q38694	250	Agamous-like MADS-box pro	N/A	no	0.901	0.956	0.561	1e-71
Q03489	241	Agamous-like MADS-box pro	N/A	no	0.886	0.975	0.542	3e-69
Q0J466	249	MADS-box transcription fa	yes	no	0.894	0.951	0.541	9e-68
P0C5B0	249	MADS-box transcription fa	N/A	no	0.894	0.951	0.541	9e-68
Q9SAR1	248	MADS-box transcription fa	yes	no	0.894	0.955	0.558	9e-68
P29383	258	Agamous-like MADS-box pro	no	no	0.966	0.992	0.498	1e-67
O22456	251	Developmental protein SEP	no	no	0.890	0.940	0.540	7e-67

>sp|Q39685|CMB1_DIACA MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 155/270 (57%), Positives = 186/270 (68%), Gaps = 42/270 (15%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
             + KTLERY RCS+G+ E ++P  ET+S+YQEYL+LK  V++LQRS RNLLGEDL  LS
Sbjct: 61  SCMNKTLERYQRCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELS 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKELEQLEHQL+ SL+ +RS KTQ M+DQL+DLQK+E++L E N+ L+            
Sbjct: 121 TKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALK------------ 168

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPI-----L 235
               T+L+ES         R  W+    G            +GFF+PL    P+     L
Sbjct: 169 ----TKLEES-----CASFRPNWDVRQPG------------DGFFEPL----PLPCNNNL 203

Query: 236 QIGYNPMGSEEAHIPVHAQNVTGFIPGWML 265
           QIGYN    ++ +    AQNV GF  GWML
Sbjct: 204 QIGYNEATQDQMNATTSAQNVHGFAQGWML 233

Dianthus caryophyllus (taxid: 3570)

>sp|P29382|SEP1_ARATH Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2

 Score =  282 bits (721), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 158/269 (58%), Positives = 188/269 (69%), Gaps = 22/269 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEA-NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
            +++KTL+RY +CS+G+ E  N+P  E +++Y+EYL+LK   E LQR QRNLLGEDL PL
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           ++KELEQLE QL+ SLK VRS KTQ M+DQLSDLQ +EQ+LLE N+ L  K         
Sbjct: 121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMK--------- 171

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGY 239
                  LD+  I  +              QN+TY  +  QS+G +QPL    P LQ+GY
Sbjct: 172 -------LDDM-IGVRSHHMGGGGGWEGGEQNVTYAHHQAQSQGLYQPLE-CNPTLQMGY 222

Query: 240 -NPMGSEEAHIPVHAQNV--TGFIPGWML 265
            NP+ SE+      AQ     G+IPGWML
Sbjct: 223 DNPVCSEQITATTQAQAQQGNGYIPGWML 251

Probable transcription factor. Functions with SEPALLATA2/AGL4 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels, and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AGAMOUS, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|P29384|SEP2_ARATH Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1

 Score =  277 bits (708), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 154/271 (56%), Positives = 186/271 (68%), Gaps = 27/271 (9%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  PSIMKTLERYHRCSFGAHEA-NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
            +++KTLERY +CS+G+ E  N+P  E +++Y+EYL+LK   E LQR QRNLLGEDL PL
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           ++KELEQLE QL+ SLK VR  KTQ M+DQLSDLQ +E +LL+ N+ L  K         
Sbjct: 121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKL-------- 172

Query: 180 TTPPFTQLDESNIAHQVPPHRL--AWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQI 237
                    E  I   V  H +   WE     QNI Y      S+G +Q L    P LQI
Sbjct: 173 ---------EDMIG--VRHHHIGGGWEGGDQ-QNIAYGHPQAHSQGLYQSLE-CDPTLQI 219

Query: 238 GYN-PMGSEEAHIPVHAQNV--TGFIPGWML 265
           GY+ P+ SE+  + V  Q+    G+IPGWML
Sbjct: 220 GYSHPVCSEQMAVTVQGQSQQGNGYIPGWML 250

Probable transcription factor. Functions with SEPALLATA1/AGL2 and SEPALLATA3/AGL9 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Forms an heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38694|AGL9_ARADE Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1

 Score =  270 bits (689), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 150/267 (56%), Positives = 186/267 (69%), Gaps = 28/267 (10%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELK IENKINRQVTFAKRR  LLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTLE+Y +C+FG+ E+     ETQS+ QEYL+LK  VE LQRSQRNLLGEDL PL 
Sbjct: 61  TSMLKTLEKYQKCNFGSPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLG 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           +KELEQLE QL++SL+ +RST+TQ M+DQL+DLQ+REQ+L E NK L+++          
Sbjct: 121 SKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQ--SEGFFQPLSGGTPILQIG 238
                  +ES+ A+Q    +  W+ ++    + Y R P Q   E F+ PL    P LQIG
Sbjct: 171 ------FEESSQANQ----QQVWDPSNT-HAVGYGRQPAQHHGEAFYHPLE-CEPTLQIG 218

Query: 239 YNPMGSEEAHIPVHAQNVTGFI-PGWM 264
           Y+   S+       A  V  ++ PGW+
Sbjct: 219 YH---SDITMATATASTVNNYMPPGWL 242

Probable transcription factor active in inflorescence development and floral organogenesis.

Aranda deborah (taxid: 29714)

>sp|Q03489|AGL9_PETHY Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2

 Score =  261 bits (668), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 180/269 (66%), Gaps = 34/269 (12%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEAN---RPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
            S++KTLERY +C++GA E N   R  +E  S+ QEYL+LK   E LQRSQRNLLGEDL 
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEI-SSQQEYLKLKARYEALQRSQRNLLGEDLG 119

Query: 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYT 177
           PL++KELE LE QL+ SLK +RST+TQ M+DQL DLQ++E  L E N+ L+++   G+  
Sbjct: 120 PLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTL 179

Query: 178 CLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQS--EGFFQPLSGGTPIL 235
                                  L W+  +  Q++ Y R   Q+  +GFF PL    P L
Sbjct: 180 ----------------------NLQWQQNA--QDVGYGRQATQTQGDGFFHPLE-CEPTL 214

Query: 236 QIGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
           QIGY    ++   +     +V  ++ GW+
Sbjct: 215 QIGYQ---NDPITVGGAGPSVNNYMAGWL 240

Probable transcription factor.

Petunia hybrida (taxid: 4102)

>sp|Q0J466|MADS7_ORYSJ MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 149/275 (54%), Positives = 184/275 (66%), Gaps = 38/275 (13%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  PSIMKTLERYHRCSFGAHEA---NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
            S+ KTLE+Y +CS+   E    NR   + +++  EYL+LK  VE LQR+QRNLLGEDLD
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYT 177
            L  KELE LE QL++SLKHVR+T+T+ +VDQL++LQ++EQ++ E N+ LR+K       
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRK------- 173

Query: 178 CLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQN-ITYNRYP-VQ-----SEGFFQPL-S 229
                    L+ESN       H    +    G N I Y R P VQ       GFF PL +
Sbjct: 174 ---------LEESN-------HVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDA 217

Query: 230 GGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
            G P LQIGY      E H  +++  +  ++P W+
Sbjct: 218 AGEPTLQIGY----PAEHHEAMNSACMNTYMPPWL 248

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C5B0|MADS7_ORYSI MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 149/275 (54%), Positives = 184/275 (66%), Gaps = 38/275 (13%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query: 61  PSIMKTLERYHRCSFGAHEA---NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
            S+ KTLE+Y +CS+   E    NR   + +++  EYL+LK  VE LQR+QRNLLGEDLD
Sbjct: 61  QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query: 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYT 177
            L  KELE LE QL++SLKHVR+T+T+ +VDQL++LQ++EQ++ E N+ LR+K       
Sbjct: 121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRK------- 173

Query: 178 CLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQN-ITYNRYP-VQ-----SEGFFQPL-S 229
                    L+ESN       H    +    G N I Y R P VQ       GFF PL +
Sbjct: 174 ---------LEESN-------HVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDA 217

Query: 230 GGTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
            G P LQIGY      E H  +++  +  ++P W+
Sbjct: 218 AGEPTLQIGY----PAEHHEAMNSACMNTYMPPWL 248

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9SAR1|MADS8_ORYSJ MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1

 Score =  256 bits (655), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 153/274 (55%), Positives = 181/274 (66%), Gaps = 37/274 (13%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 61  PSIMKTLERYHRCSFGAHEA---NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
            S+ +TLERY + S+G  +    N+     QS+  EYL+LK  VE LQR+QRNLLGEDL 
Sbjct: 61  QSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLG 120

Query: 118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYT 177
            L  KELEQLE QL++SL+H+RST+TQ M+DQL+DLQ+REQ+L E NK LR+K       
Sbjct: 121 TLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK------- 173

Query: 178 CLTTPPFTQLDESNIAH-QVPPHR---LAWEAAS--AGQNITYNRYPVQSEGFFQPL-SG 230
                    L+ESN  H QV  H    L +E  S  A Q +     P    GFF  L + 
Sbjct: 174 ---------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVP----PHGGNGFFHSLEAA 220

Query: 231 GTPILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
             P LQIG+ P         ++   VT F+P W+
Sbjct: 221 AEPTLQIGFTPE-------QMNNSCVTAFMPTWL 247

Probable transcription factor. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P29383|AGL3_ARATH Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 133/267 (49%), Positives = 177/267 (66%), Gaps = 11/267 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 61  PSIM-KTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
           PS M +T+++Y + S+   + N+   + Q  YQ+YL+LK+ VE+LQ SQR+LLGE+L  +
Sbjct: 61  PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
              ELE LE Q++ SL+ +RSTK + M+DQLSDL+ +E++LLE N+ LR+K  L +    
Sbjct: 121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK--LEDSDAA 178

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPI-LQIG 238
            T  F               +   +    G +   +  P+Q  GFF+PL G   + +   
Sbjct: 179 LTQSF-------WGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGFFKPLQGNVALQMSSH 231

Query: 239 YNPMGSEEAHIPVHAQNVTGFIPGWML 265
           YN   +   +    +QNV GF PGWM+
Sbjct: 232 YNHNPANATNSATTSQNVNGFFPGWMV 258

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|O22456|SEP3_ARATH Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1

 Score =  253 bits (647), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 147/272 (54%), Positives = 176/272 (64%), Gaps = 36/272 (13%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIET----QSTYQEYLRLKTAVELLQRSQRNLLGEDL 116
            S+++TLERY +C++GA E N P  E      S+ QEYL+LK   + LQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 117 DPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNY 176
            PLSTKELE LE QL++SLK +R+ +TQ M+DQL+DLQ +E++L E NK LR +   G  
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query: 177 TCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNR----YPVQSEGFFQPLSGGT 232
             L   P    ++  + H                   Y R        S+ FFQPL    
Sbjct: 181 MPLQLNP----NQEEVDH-------------------YGRHHHQQQQHSQAFFQPLE-CE 216

Query: 233 PILQIGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
           PILQIGY          P    +V  ++ GW+
Sbjct: 217 PILQIGYQGQQDGMGAGP----SVNNYMLGWL 244

Probable transcription factor active in inflorescence development and floral organogenesis. Functions with SEPALLATA1/AGL2 and SEPALLATA2/AGL4 to ensure proper development of petals, stamens and carpels and to prevent the indeterminate growth of the flower meristem. Interacts with APETALA1, AGAMOUS or APETALA3/PISTILLATA to form complexes, that could be involved in genes regulation during floral meristem development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
313907147	244	Sepallata 1-like protein [Platanus x ace	0.916	0.995	0.695	1e-93
298204456	243	unnamed protein product [Vitis vinifera]	0.916	1.0	0.660	5e-90
20385584	244	MADS-box protein 2 [Vitis vinifera]	0.916	0.995	0.661	2e-89
225451815	244	PREDICTED: developmental protein SEPALLA	0.916	0.995	0.661	3e-89
225456544	246	PREDICTED: MADS-box protein CMB1 [Vitis	0.916	0.987	0.654	3e-89
364506603	245	SEP1 [Acca sellowiana]	0.920	0.995	0.654	5e-88
163929884	243	SEPALLATA1 homolog [Citrus unshiu]	0.916	1.0	0.645	1e-87
70955228	251	MADS box protein [Prunus persica]	0.924	0.976	0.649	2e-87
288973066	246	SEPALLATA1-like protein [Akebia trifolia	0.924	0.995	0.631	5e-87
187942344	245	MADS1 [Carica papaya]	0.916	0.991	0.636	9e-87

>gi|313907147|gb|ADR83588.1| Sepallata 1-like protein [Platanus x acerifolia]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 185/266 (69%), Positives = 205/266 (77%), Gaps = 23/266 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIM-KTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
            S M KTL RY RCS+G  EA++PP ETQS+YQEYL+LK  VELLQRSQRNLLGEDL  L
Sbjct: 61  SSSMLKTLGRYQRCSYGTLEASQPPKETQSSYQEYLKLKARVELLQRSQRNLLGEDLGSL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           +TKELEQLEHQLE SLK VRSTKTQ M+DQLSDLQ++E +  E N+ LR+K         
Sbjct: 121 NTKELEQLEHQLEMSLKQVRSTKTQLMLDQLSDLQEKEHMPQEANRALRRK--------- 171

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGY 239
                  LDES+  +   P RL+WEA   GQNI YNR P QSEGFFQ L   +  LQIGY
Sbjct: 172 -------LDESSTEN---PLRLSWEA--GGQNIPYNRQPAQSEGFFQALECNS-TLQIGY 218

Query: 240 NPMGSEEAHIPVHAQNVTGFIPGWML 265
           NP+G ++  +   AQNV GFIPGWML
Sbjct: 219 NPVGPDQITVTAPAQNVNGFIPGWML 244

Source: Platanus x acerifolia

Species: Platanus x acerifolia

Genus: Platanus

Family: Platanaceae

Order: Proteales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204456|emb|CBI16936.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 175/265 (66%), Positives = 202/265 (76%), Gaps = 22/265 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTLERY +CS+GA E +RP  E +S+Y+EYL+LK+  E LQR+QRNLLGEDL PL+
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELESSYREYLKLKSKFESLQRTQRNLLGEDLGPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKELEQLE QLETSLK VRSTKTQ M+DQLSDLQ +EQVL+E NK L +K          
Sbjct: 121 TKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYN 240
                 LDE ++ + +   +L+WE  S  Q++ Y     QS+GFFQPL    P LQIGYN
Sbjct: 171 ------LDEISVKNHL---QLSWE--SGEQSMPYGHQQAQSQGFFQPLE-CNPTLQIGYN 218

Query: 241 PMGSEEAHIPVHAQNVTGFIPGWML 265
           P GS +   P +AQNV GFIPGWML
Sbjct: 219 PAGSSQLSAPSNAQNVNGFIPGWML 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385584|gb|AAM21342.1|AF373601_1 MADS-box protein 2 [Vitis vinifera]

 Score =  334 bits (856), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 176/266 (66%), Positives = 202/266 (75%), Gaps = 23/266 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIE-TQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
            S++KTLERY +CS+GA E +RP  E  QS+Y+EYL+LK+  E LQR+QRNLLGEDL PL
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYREYLKLKSKFEALQRTQRNLLGEDLGPL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           +TKELEQLE QLETSLK VRSTKTQ M+DQLSDLQ +EQVL+E NK L +K         
Sbjct: 121 NTKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRK--------- 171

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGY 239
                  LDE ++ + +   +L+WE  S  Q++ Y     QS+GFFQPL    P LQIGY
Sbjct: 172 -------LDEISVKNHL---QLSWE--SGEQSMPYGHQQAQSQGFFQPLE-CNPTLQIGY 218

Query: 240 NPMGSEEAHIPVHAQNVTGFIPGWML 265
           NP GS +   P +AQNV GFIPGWML
Sbjct: 219 NPAGSSQLSAPSNAQNVNGFIPGWML 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451815|ref|XP_002281482.1| PREDICTED: developmental protein SEPALLATA 1 [Vitis vinifera]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/266 (66%), Positives = 202/266 (75%), Gaps = 23/266 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIE-TQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
            S++KTLERY +CS+GA E +RP  E  QS+Y+EYL+LK+  E LQR+QRNLLGEDL PL
Sbjct: 61  SSMLKTLERYQKCSYGAVEVSRPSKELEQSSYREYLKLKSKFESLQRTQRNLLGEDLGPL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           +TKELEQLE QLETSLK VRSTKTQ M+DQLSDLQ +EQVL+E NK L +K         
Sbjct: 121 NTKELEQLERQLETSLKQVRSTKTQFMLDQLSDLQNKEQVLVESNKALTRK--------- 171

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGY 239
                  LDE ++ + +   +L+WE  S  Q++ Y     QS+GFFQPL    P LQIGY
Sbjct: 172 -------LDEISVKNHL---QLSWE--SGEQSMPYGHQQAQSQGFFQPLE-CNPTLQIGY 218

Query: 240 NPMGSEEAHIPVHAQNVTGFIPGWML 265
           NP GS +   P +AQNV GFIPGWML
Sbjct: 219 NPAGSSQLSAPSNAQNVNGFIPGWML 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456544|ref|XP_002263039.1| PREDICTED: MADS-box protein CMB1 [Vitis vinifera] gi|297734091|emb|CBI15338.3| unnamed protein product [Vitis vinifera]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 174/266 (65%), Positives = 204/266 (76%), Gaps = 23/266 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FS+RGKLYEFCS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSSRGKLYEFCSG 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIE-TQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
           PS+ KTLE+Y +CS+GA EA++P  E TQS+YQEYL+LKT VE+LQRSQR+LLGEDLDPL
Sbjct: 61  PSMAKTLEKYQKCSYGALEASQPVYELTQSSYQEYLKLKTRVEVLQRSQRHLLGEDLDPL 120

Query: 120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
           +TKELEQLEHQLE SLK +RSTKTQ M+DQL+DLQ +E +L+E N  LR+K         
Sbjct: 121 NTKELEQLEHQLEMSLKQIRSTKTQNMLDQLADLQNKEHMLIEANNALRRK--------- 171

Query: 180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGY 239
                  L+ESN  H   P + +WEA  AG +  Y+R P QSEGFFQPL   +  L++GY
Sbjct: 172 -------LEESNGKH---PLQQSWEA--AGNSALYSRLPAQSEGFFQPLERNS-TLEMGY 218

Query: 240 NPMGSEEAHIPVHAQNVTGFIPGWML 265
           N  GS E  +   +QN  GF PGWML
Sbjct: 219 NAAGSNEITLAAPSQNDNGFGPGWML 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|364506603|gb|AEW50208.1| SEP1 [Acca sellowiana]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/266 (65%), Positives = 202/266 (75%), Gaps = 22/266 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S+ KT+E+Y +CS+G+ EAN    + Q++YQEYL+LK  VE+LQRSQRNLLGEDL PL+
Sbjct: 61  SSMTKTIEKYQKCSYGSLEANCSINDMQNSYQEYLKLKARVEVLQRSQRNLLGEDLGPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKELEQLEHQLE SLK +RSTKTQ M+DQL+ LQ +EQ+L+E N+ LRKK          
Sbjct: 121 TKELEQLEHQLENSLKQIRSTKTQFMLDQLAHLQHKEQMLVEANRDLRKK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGF-FQPLSGGTPILQIGY 239
                 L+ESN      P RL WEA     +I+Y+R P QS+G  FQPL G  P LQIGY
Sbjct: 171 ------LEESNAR---IPLRLGWEAEDHN-SISYSRLPPQSQGLIFQPL-GDNPTLQIGY 219

Query: 240 NPMGSEEAHIPVHAQNVTGFIPGWML 265
           NP GS EA++    Q+  GFIPGWML
Sbjct: 220 NPAGSNEANVSAADQHPNGFIPGWML 245

Source: Acca sellowiana

Species: Acca sellowiana

Genus: Acca

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|163929884|dbj|BAF95941.1| SEPALLATA1 homolog [Citrus unshiu]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 171/265 (64%), Positives = 198/265 (74%), Gaps = 22/265 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTLERY +CS+GA E N+P  E +S+Y+EYL+LKT  E LQR+QRNLLGEDL PL+
Sbjct: 61  SSMLKTLERYQKCSYGAVEVNKPAKELESSYREYLKLKTRFESLQRTQRNLLGEDLGPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           +KELEQLE QLE+SLKHVRSTKTQ M+DQLSDLQ +EQ+LL+ N+ L  K          
Sbjct: 121 SKELEQLERQLESSLKHVRSTKTQYMLDQLSDLQNKEQLLLDTNRALTIK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYN 240
                 LDE N   Q+ P   +WE     Q + YN    Q++G FQP+    P LQIGYN
Sbjct: 171 ------LDEINAKTQLRP---SWEGGE--QQLGYNPQHAQTQGLFQPIE-CNPTLQIGYN 218

Query: 241 PMGSEEAHIPVHAQNVTGFIPGWML 265
           P  S++     HAQ V+GFIPGWML
Sbjct: 219 PSCSDQMTATSHAQQVSGFIPGWML 243

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70955228|gb|AAZ16241.1| MADS box protein [Prunus persica]

 Score =  328 bits (841), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 176/271 (64%), Positives = 205/271 (75%), Gaps = 26/271 (9%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTLE+Y RCS+G+ EANRP  ETQ++YQEYL+LK  VE+LQ+SQRNLLGEDL PL+
Sbjct: 61  MSMLKTLEKYQRCSYGSLEANRPVNETQNSYQEYLKLKARVEVLQQSQRNLLGEDLAPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKELEQLEHQLE SL  +RSTKTQ M+DQL DLQ +EQ+L+E NK LR+K          
Sbjct: 121 TKELEQLEHQLEASLNQIRSTKTQFMLDQLCDLQNKEQMLVEANKALRRK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAG-QNITYNRYP--VQSEGFFQPLSGGTPILQI 237
                 L+E+  + Q PP  LAWEAA  G  N+ +   P    S+GFF PL G     QI
Sbjct: 171 ------LEET--SGQAPP-LLAWEAAGHGNNNVQHTGLPHHPHSQGFFHPL-GNNSTSQI 220

Query: 238 GYNPMGS---EEAHIPVHAQNVTGFIPGWML 265
           GY P+GS   E+ ++  H Q+V GFIPGWML
Sbjct: 221 GYTPLGSDHHEQMNVGNHGQHVNGFIPGWML 251

Source: Prunus persica

Species: Prunus persica

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|288973066|gb|ADC79693.1| SEPALLATA1-like protein [Akebia trifoliata]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/266 (63%), Positives = 207/266 (77%), Gaps = 21/266 (7%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVEL+RIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCSS
Sbjct: 1   MGRGRVELRRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTL+RY +CS+G  EA+ PP +TQ+ YQEYLRLK  VE+LQ++QRNLLGEDL PL+
Sbjct: 61  SSMLKTLDRYQKCSYGTLEASMPPKDTQNNYQEYLRLKARVEVLQQTQRNLLGEDLGPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKEL+QLE+QLETSL+ +RSTKTQ + DQLSDLQ++EQ+L E N+ LR+K          
Sbjct: 121 TKELDQLENQLETSLRTIRSTKTQFLFDQLSDLQRKEQMLHEANRTLRRK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYN 240
                 LDE+  + ++P  +L+W+ AS GQN+ Y R  + S+GFFQPL   +  LQIGYN
Sbjct: 171 ------LDEN--STEIPNLQLSWD-ASGGQNMAYGRQNLPSDGFFQPLECNS-TLQIGYN 220

Query: 241 PMGSEEAHI-PVHAQNVTGFIPGWML 265
           P+  ++ +     AQNV  FIPGWML
Sbjct: 221 PVDQDQINNGQTSAQNVNCFIPGWML 246

Source: Akebia trifoliata

Species: Akebia trifoliata

Genus: Akebia

Family: Lardizabalaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|187942344|gb|ACD39982.1| MADS1 [Carica papaya]

 Score =  325 bits (834), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 170/267 (63%), Positives = 200/267 (74%), Gaps = 24/267 (8%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
            S++KTL+RY +CS+GA E ++P  E +S+Y+EYL+LKT  E LQR+QRNLLGEDL PL+
Sbjct: 61  SSMLKTLDRYQKCSYGAVEVSKPAKELESSYREYLKLKTRFEALQRTQRNLLGEDLGPLN 120

Query: 121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
           TKELEQLE QLE+SLKHVRSTKTQ M+DQL+DLQ +E +LLE N+ L  K          
Sbjct: 121 TKELEQLERQLESSLKHVRSTKTQYMLDQLTDLQNKEHMLLEANRALTIK---------- 170

Query: 181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYN 240
                 LDE +  + +   R+AWE +   QN++Y     QS+G FQPL    P LQIGYN
Sbjct: 171 ------LDEISARNHL---RVAWEGSE--QNVSYGHQHAQSQGLFQPLE-CNPTLQIGYN 218

Query: 241 PMGSEE--AHIPVHAQNVTGFIPGWML 265
           P+GS++  A      Q V GFIPGWML
Sbjct: 219 PVGSDQMTAAATSQGQQVNGFIPGWML 245

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.641	0.693	0.747	7.4e-80
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.939	1.0	0.596	3.5e-68
UNIPROTKB|Q6EUV7	247	grcd2 "MADS domain protein" [G	0.641	0.688	0.666	7.7e-68
TAIR|locus:2143261	262	SEP1 "SEPALLATA1" [Arabidopsis	0.935	0.946	0.562	1.3e-66
UNIPROTKB|Q03489	241	FBP2 "Agamous-like MADS-box pr	0.656	0.721	0.707	2.9e-66
TAIR|locus:2044259	258	SEP4 "SEPALLATA 4" [Arabidopsi	0.966	0.992	0.516	4.7e-64
UNIPROTKB|D2T2F9	252	grcd5 "GRCD5 protein" [Gerbera	0.920	0.968	0.555	3.3e-63
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.826	0.872	0.584	2.1e-61
TAIR|locus:2076522	250	SEP2 "SEPALLATA 2" [Arabidopsi	0.932	0.988	0.537	2.7e-61
UNIPROTKB|Q0J466	249	MADS7 "MADS-box transcription	0.920	0.979	0.529	2.4e-60

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 641 (230.7 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
 Identities = 127/170 (74%), Positives = 149/170 (87%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
              S+MKTLE+Y +CS+ + +  +   +TQ+ Y EYLRLK  VELLQRSQRNLLGEDL  L+
Sbjct:    61 SSMMKTLEKYQQCSYASLDPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGEDLGSLN 120

Query:   121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170
             +KELEQLEHQL++SLK +RS KTQ M+DQL+DLQ++EQ+L E NK LR+K
Sbjct:   121 SKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRK 170

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 158/265 (59%), Positives = 184/265 (69%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLS 120
              S++KTLE+YH CS+G+ +A++P  E+Q  Y EYLRLK  VE+LQRSQRNLLGEDL PL+
Sbjct:    61 SSMVKTLEKYHSCSYGSLKASQPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLN 120

Query:   121 TKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCLT 180
             TKELEQLEHQLE SL+ +RSTKTQ M+DQL+DLQ++EQVL E NK LRKK          
Sbjct:   121 TKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRKEQVLAETNKALRKKL----EESAQ 176

Query:   181 TPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYN 240
               P  Q+ E   A  +P + L   +    Q +  N     S   F  L    PI+    N
Sbjct:   177 EYPVRQMWEGG-AQTIPYNPLPTHSDEFFQPLGLNSTMHNS---FNGLRYN-PIVSDEMN 231

Query:   241 PMGSEEAHIPVHAQNVTGFIPGWML 265
               G+       ++ N  G  PGWML
Sbjct:   232 VAGANN-----NSPN--GLFPGWML 249

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EUV7 grcd2 "MADS domain protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 580 (209.2 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
 Identities = 114/171 (66%), Positives = 142/171 (83%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKL+EFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCST 60

Query:    61 PSIMKTLERYHRCSFGAHEANRP-PIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
              +++K LERY  C++G+ E +R  P   QS+Y+EY++LK   E LQ+ QR L GEDL PL
Sbjct:    61 SNMLKMLERYQNCTYGSMEVDRSTPNAEQSSYKEYMKLKAKYESLQQYQRQLFGEDLGPL 120

Query:   120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK 170
             S KELEQLE QL+++L+ +RS +TQ M+D+LS+LQ +E++ +E NK L+ K
Sbjct:   121 SLKELEQLERQLDSTLRQIRSIRTQSMLDRLSELQVKERMWVEANKALQNK 171

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2143261 SEP1 "SEPALLATA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 157/279 (56%), Positives = 188/279 (67%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSIMKTLERYHRCSFGAHEANRPPI-ETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
              +++KTL+RY +CS+G+ E N  P  E +++Y+EYL+LK   E LQR QRNLLGEDL PL
Sbjct:    61 SNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
             ++KELEQLE QL+ SLK VRS KTQ M+DQLSDLQ +EQ+LLE N+ L  K  L +   +
Sbjct:   121 NSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMK--LDDMIGV 178

Query:   180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQ--- 236
              +            H +      WE     QN+TY  +  QS+G +QPL     +     
Sbjct:   179 RS------------HHMGGGG-GWEGGE--QNVTYAHHQAQSQGLYQPLECNPTLQMGCC 223

Query:   237 IG-------Y-NPMGSEE--AHIPVHAQNVTGFIPGWML 265
              G       Y NP+ SE+  A     AQ   G+IPGWML
Sbjct:   224 FGDDDDDDRYDNPVCSEQITATTQAQAQQGNGYIPGWML 262

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=IDA

UNIPROTKB|Q03489 FBP2 "Agamous-like MADS-box protein AGL9 homolog" [Petunia x hybrida (taxid:4102)]

 Score = 619 (223.0 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
 Identities = 126/178 (70%), Positives = 147/178 (82%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSIMKTLERYHRCSFGAHEAN---RPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
              S++KTLERY +C++GA E N   R  +E  S+ QEYL+LK   E LQRSQRNLLGEDL 
Sbjct:    61 SSMLKTLERYQKCNYGAPETNISTREALEI-SSQQEYLKLKARYEALQRSQRNLLGEDLG 119

Query:   118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGN 175
             PL++KELE LE QL+ SLK +RST+TQ M+DQL DLQ++E  L E N+ L+++   G+
Sbjct:   120 PLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGS 177

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2044259 SEP4 "SEPALLATA 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 138/267 (51%), Positives = 183/267 (68%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRG+VELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS
Sbjct:     1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query:    61 PSIM-KTLERYHRCSFGAHEANRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
             PS M +T+++Y + S+   + N+   + Q  YQ+YL+LK+ VE+LQ SQR+LLGE+L  +
Sbjct:    61 PSGMARTVDKYRKHSYATMDPNQSAKDLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEM 120

Query:   120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYTCL 179
                ELE LE Q++ SL+ +RSTK + M+DQLSDL+ +E++LLE N+ LR+K  L +    
Sbjct:   121 DVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK--LEDSDAA 178

Query:   180 TTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPI-LQIG 238
              T  F     S+ A Q   H+   +  S+ Q+      P+Q  GFF+PL G   + +   
Sbjct:   179 LTQSFWG---SSAAEQQQQHQQQQQGMSSYQS----NPPIQEAGFFKPLQGNVALQMSSH 231

Query:   239 YNPMGSEEAHIPVHAQNVTGFIPGWML 265
             YN   +   +    +QNV GF PGWM+
Sbjct:   232 YNHNPANATNSATTSQNVNGFFPGWMV 258

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0010076 "maintenance of floral meristem identity" evidence=IMP

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0048441 "petal development" evidence=IMP

GO:0048442 "sepal development" evidence=IMP

GO:0048443 "stamen development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

UNIPROTKB|D2T2F9 grcd5 "GRCD5 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 150/270 (55%), Positives = 182/270 (67%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSIMKTLERYHRCSFGA-HEAN---RPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDL 116
              S++KTLERY +C++GA  + N   R  +E  S+ QEYL+LK   E LQRSQRNLLGEDL
Sbjct:    61 SSMLKTLERYQKCNYGAPDQTNVSAREALEL-SSQQEYLKLKARYEALQRSQRNLLGEDL 119

Query:   117 DPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNY 176
              PL+ KELE LE QL+TSLKH+RS +TQ M+D L+DLQK+E  L E N+ L+++   G  
Sbjct:   120 GPLNCKELESLERQLDTSLKHIRSARTQLMLDTLTDLQKKEHALNEANRTLKQRLIEG-- 177

Query:   177 TCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQ 236
                     TQ++  +   Q P      +   A Q+ T        E FF PL  G P LQ
Sbjct:   178 --------TQINSLHWYPQAPQEVCYDDRQHAPQHQT-------DEAFFHPLDCG-PTLQ 221

Query:   237 IGY--NPMGSEEAHIPVHAQNVTGFIPGWM 264
             IGY  +P+    A   V   ++  ++ GW+
Sbjct:   222 IGYQTDPINVAGAEA-VAGPSMNNYMQGWL 250

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 142/243 (58%), Positives = 172/243 (70%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 PSIMKTLERYHRCSFGAHEANRPPIETQ----STYQEYLRLKTAVELLQRSQRNLLGEDL 116
              S+++TLERY +C++GA E N P  E      S+ QEYL+LK   + LQR+QRNLLGEDL
Sbjct:    61 SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query:   117 DPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNY 176
              PLSTKELE LE QL++SLK +R+ +TQ M+DQL+DLQ +E++L E NK LR +   G  
Sbjct:   121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query:   177 TCLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQ 236
               L   P    ++  + H              G++  +++    S+ FFQPL    PILQ
Sbjct:   181 MPLQLNP----NQEEVDHY-------------GRH--HHQQQQHSQAFFQPLEC-EPILQ 220

Query:   237 IGY 239
             IGY
Sbjct:   221 IGY 223

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2076522 SEP2 "SEPALLATA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 144/268 (53%), Positives = 177/268 (66%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query:    61 PSIMKTLERYHRCSFGAHEANRPPI-ETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPL 119
              +++KTLERY +CS+G+ E N  P  E +++Y+EYL+LK   E LQR QRNLLGEDL PL
Sbjct:    61 SNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPL 120

Query:   120 STKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKA--FLGNYT 177
             ++KELEQLE QL+ SLK VR  KTQ M+DQLSDLQ +E +LL+ N+ L  K    +G   
Sbjct:   121 NSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRH 180

Query:   178 CLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPLSGGTPILQI 237
                   +   D+ NIA+  P      +A S G   +    P    G+  P+       Q+
Sbjct:   181 HHIGGGWEGGDQQNIAYGHP------QAHSQGLYQSLECDPTLQIGYSHPVCSE----QM 230

Query:   238 GYNPMGSEEAHIPVHAQNVTGFIPGWML 265
                  G         +Q   G+IPGWML
Sbjct:   231 AVTVQGQ--------SQQGNGYIPGWML 250

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009908 "flower development" evidence=NAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q0J466 MADS7 "MADS-box transcription factor 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 142/268 (52%), Positives = 181/268 (67%)

Query:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS+
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCST 60

Query:    61 PSIMKTLERYHRCSFGAHEA---NRPPIETQSTYQEYLRLKTAVELLQRSQRNLLGEDLD 117
              S+ KTLE+Y +CS+   E    NR   + +++  EYL+LK  VE LQR+QRNLLGEDLD
Sbjct:    61 QSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLD 120

Query:   118 PLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKKAFLGNYT 177
              L  KELE LE QL++SLKHVR+T+T+ +VDQL++LQ++EQ++ E N+ LR+K    N+ 
Sbjct:   121 SLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV 180

Query:   178 CLTTPPFTQLDESNIAHQVPPHRLAWEAASAGQNITYNRYPVQSEGFFQPL-SGGTPILQ 236
                     Q+ E         + + +E     Q   +        GFF PL + G P LQ
Sbjct:   181 -----RGQQVWEQGC------NLIGYERQPEVQQPLHG-----GNGFFHPLDAAGEPTLQ 224

Query:   237 IGYNPMGSEEAHIPVHAQNVTGFIPGWM 264
             IGY P    E H  +++  +  ++P W+
Sbjct:   225 IGY-PA---EHHEAMNSACMNTYMPPWL 248

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P29382	SEP1_ARATH	No assigned EC number	0.5873	0.9320	0.9840	yes	no
O65874	MTF1_PEA	No assigned EC number	0.5092	0.9094	0.9757	N/A	no
P0C5B0	MADS7_ORYSI	No assigned EC number	0.5418	0.8943	0.9518	N/A	no
Q9SAR1	MADS8_ORYSJ	No assigned EC number	0.5583	0.8943	0.9556	yes	no
Q03489	AGL9_PETHY	No assigned EC number	0.5427	0.8867	0.9751	N/A	no
Q0J466	MADS7_ORYSJ	No assigned EC number	0.5418	0.8943	0.9518	yes	no
Q39685	CMB1_DIACA	No assigned EC number	0.5740	0.8603	0.9785	N/A	no
O04067	AGL9_SINAL	No assigned EC number	0.5274	0.8981	0.9370	N/A	no
Q38694	AGL9_ARADE	No assigned EC number	0.5617	0.9018	0.956	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MADS2	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (243 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00037199001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (128 aa)							•		0.483

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	5e-45
smart00432	59	smart00432, MADS, MADS domain	9e-36
pfam01486	100	pfam01486, K-box, K-box region	4e-34
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	7e-34
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	2e-29
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	9e-27
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	4e-11

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  145 bits (369), Expect = 5e-45
 Identities = 55/73 (75%), Positives = 64/73 (87%), Gaps = 1/73 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GRG++E+KRIEN  NRQVTF+KRRNGLLKKA+ELSVLCDAEVALIIFS+ GKLYEF  SP
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS-SP 59

Query: 62 SIMKTLERYHRCS 74
          S+ K +ERY + S
Sbjct: 60 SMEKIIERYQKTS 72

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  121 bits (306), Expect = 9e-36
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          GR ++E+KRIENK NRQVTF+KRRNGL KKA+ELSVLCDAEVALI+FS  GKLYEF S 
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score =  118 bits (298), Expect = 4e-34
 Identities = 44/85 (51%), Positives = 61/85 (71%)

Query: 86  ETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQC 145
           + ++  QE  +LK   E LQR QR+LLGEDL  LS KEL+QLE QLE  LKH+RS K + 
Sbjct: 13  KYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNEL 72

Query: 146 MVDQLSDLQKREQVLLELNKGLRKK 170
           +++Q+ +LQK+E+ L E N+ LR+K
Sbjct: 73  LLNQIEELQKKERELQEENRNLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  116 bits (294), Expect = 7e-34
 Identities = 46/59 (77%), Positives = 53/59 (89%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          GRG++E+KRIENK +RQVTF+KRRNGL KKA ELSVLCDAEVA+I+FS  GKLYEF SS
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  105 bits (265), Expect = 2e-29
 Identities = 38/71 (53%), Positives = 49/71 (69%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++KRIENK  R VTF+KRR GL KKA ELS LC AEVA+I++S  GKLY F  S 
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 SIMKTLERYHR 72
           +   + R+  
Sbjct: 61 EVEGVISRFEV 71

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 98.2 bits (245), Expect = 9e-27
 Identities = 41/51 (80%), Positives = 47/51 (92%)

Query: 9  KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          KRIENK NRQVTF+KRRNG+ KKA+ELSVLCDAEVA+IIFS+ GKLYE+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 62.0 bits (150), Expect = 4e-11
 Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           +   ++ +  I NK  R VTF+KR++G+ KKA+ELSVL   EV L++ S  G ++ F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  --PSIMKTLERYHRCSFGAHEANRP--PIETQSTYQEYLRLKTAVELLQRSQRNLLGEDL 116
              S++K+LE        +  +N P    E  S+   +         +   Q N   +  
Sbjct: 141 KLESVVKSLEGKS--LIQSPCSNAPSDSSEEPSSSASFSVDPNDNNPMGSFQHNGSPQT- 197

Query: 117 DPLSTKELEQLEHQLETSLKH 137
           + +  +  +  ++Q  +S K 
Sbjct: 198 NFIPLQNPQTQQYQQHSSRKD 218

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.95
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.82
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.75
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.39
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	92.51
PRK04098	158	sec-independent translocase; Provisional	89.37
PF10584	23	Proteasome_A_N: Proteasome subunit A N-terminal si	87.16
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	80.3

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=5.3e-40  Score=283.04  Aligned_cols=164  Identities=49%  Similarity=0.670  Sum_probs=135.1

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCch-hHHHHHHHHhhcCCCccc
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP-SIMKTLERYHRCSFGAHE   79 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~-sm~~iLeRY~~~~~~~~~   79 (265)
                      ||||||+|+||||+++|||||+|||+||||||+|||||||||||||||||+|++|+|++++ +|..+++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            9999999999999999999999999999999999999999999999999999999999753 399999999987665543


Q ss_pred             CCCCCcch---------------------hhhHHHHHHHHHHHHHHHH---hhhhhcCCCCCCCCH-HHHHHHHHHHHhc
Q 024640           80 ANRPPIET---------------------QSTYQEYLRLKTAVELLQR---SQRNLLGEDLDPLST-KELEQLEHQLETS  134 (265)
Q Consensus        80 ~~~~~~e~---------------------q~~~~E~~kLk~kie~Lq~---~~R~llGedL~~Ls~-~EL~qLE~qLe~s  134 (265)
                      ......+.                     +.+..+...++...+.|+.   .++++.|++|.+++. .+|..++.+|+.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~l~~~  160 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNELNSLESQLESS  160 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHHhcchhhHHHHh
Confidence            33222221                     1123344455556666553   488999999999999 9999999999999


Q ss_pred             hhhhhhhhhhhHHHHHH-HHHHHHHHHHHHh
Q 024640          135 LKHVRSTKTQCMVDQLS-DLQKREQVLLELN  164 (265)
Q Consensus       135 L~~IRsrK~qlm~~qi~-~LqkKe~~L~eeN  164 (265)
                      +..+|..+...+.+++. .++.++..+.+.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (195)
T KOG0014|consen  161 LHNSRSSKSKPLSDSNFQVLQEKEKSLEAEN  191 (195)
T ss_pred             hcCCCCCCCcCCcchhhhhhcccchhccccC
Confidence            99999999999999887 7777666655443

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.97  E-value=9.9e-33  Score=205.64  Aligned_cols=74  Identities=73%  Similarity=1.074  Sum_probs=70.9

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCCC
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFG   76 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~~   76 (265)
                      ||+||+|++|||+.+|++||+|||+||||||+||||||||+||||||||+|++|+|+|+ ++.+||+||...+..
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~-s~~~vl~ry~~~~~~   74 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP-SMEKIIERYQKTSGS   74 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC-CHHHHHHHHHhcccc
Confidence            89999999999999999999999999999999999999999999999999999999975 689999999988654

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=2.4e-30  Score=195.46  Aligned_cols=77  Identities=51%  Similarity=0.777  Sum_probs=71.7

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCCCcc
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFGAH   78 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~~~~   78 (265)
                      ||+||+|++|+|+.+|+|||+|||.||+|||+||||||||+||||||||+|++|+|++++++..+|+||...+....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~   77 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALER   77 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhh
Confidence            89999999999999999999999999999999999999999999999999999999876559999999998765443

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.95  E-value=2.2e-29  Score=178.01  Aligned_cols=59  Identities=78%  Similarity=1.156  Sum_probs=57.5

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCc
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS   60 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~   60 (265)
                      ||+||+|++|||+.+|++||+||+.||+|||+|||||||||||||||||+|++|+|+++
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999863

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.1e-28  Score=174.41  Aligned_cols=58  Identities=78%  Similarity=1.181  Sum_probs=57.0

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccC
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS   59 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S   59 (265)
                      ||+||+|++|+|+..|++||+|||.||+|||+||||||||+||+|||||+|++|+|++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~   58 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS   58 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence            7999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=2.5e-27  Score=162.45  Aligned_cols=51  Identities=67%  Similarity=0.998  Sum_probs=47.1

Q ss_pred             eeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccC
Q 024640            9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS   59 (265)
Q Consensus         9 krIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S   59 (265)
                      |+|||+..|++||+|||.||+|||+|||+|||||||||||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.82  E-value=5e-20  Score=143.68  Aligned_cols=86  Identities=47%  Similarity=0.650  Sum_probs=83.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Q 024640           85 IETQSTYQEYLRLKTAVELLQRSQRNLLGEDLDPLSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELN  164 (265)
Q Consensus        85 ~e~q~~~~E~~kLk~kie~Lq~~~R~llGedL~~Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN  164 (265)
                      ...+.+..|+.+|+.+++.|+..+|+++|+||++||++||.+||++|+.||++||+||+++|.++|+.|++|++.|.++|
T Consensus        12 ~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en   91 (100)
T PF01486_consen   12 SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEEN   91 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 024640          165 KGLRKK  170 (265)
Q Consensus       165 ~~L~~k  170 (265)
                      ..|+.+
T Consensus        92 ~~L~~~   97 (100)
T PF01486_consen   92 NQLRQK   97 (100)
T ss_pred             HHHHHH
Confidence            999999

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.75  E-value=3e-19  Score=160.32  Aligned_cols=65  Identities=42%  Similarity=0.763  Sum_probs=60.1

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHH
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTL   67 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iL   67 (265)
                      ||.||+|++|||+..|.|||||||.|+||||||||||.|.+|-|+|.|.+|-+|.|+++ .++.||
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp-KLep~i  127 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP-KLEPMI  127 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc-cccccc
Confidence            79999999999999999999999999999999999999999999999999999999975 444333

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.39  E-value=1e-13  Score=129.84  Aligned_cols=65  Identities=37%  Similarity=0.604  Sum_probs=60.7

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHH
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKT   66 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~i   66 (265)
                      |||+|+.|..|+|+.+|.|||+||+.|++|||+||+||.|.+|.|+|.|.+|+++.|+++ ..+.|
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp-~~e~v  145 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP-KLESV  145 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC-ccccc
Confidence            789999999999999999999999999999999999999999999999999999999975 34433

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=92.51  E-value=0.65  Score=34.09  Aligned_cols=47  Identities=23%  Similarity=0.400  Sum_probs=34.7

Q ss_pred             CCHHHHHHHHHHHHhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640          119 LSTKELEQLEHQLETSLKHVRSTKTQCMVDQLSDLQKREQVLLELNKGLRKK  170 (265)
Q Consensus       119 Ls~~EL~qLE~qLe~sL~~IRsrK~qlm~~qi~~LqkKe~~L~eeN~~L~~k  170 (265)
                      +|++.|.+||..+..++..|.     ++..++++|+.+-..|.++|..|+..
T Consensus         1 M~~E~l~~LE~ki~~aveti~-----~Lq~e~eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIA-----LLQMENEELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            578899999999999998887     44556677887766666666666665

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK04098 sec-independent translocase; Provisional

Probab=89.37  E-value=0.18  Score=42.56  Aligned_cols=30  Identities=23%  Similarity=0.235  Sum_probs=23.9

Q ss_pred             ceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640           42 EVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS   74 (265)
Q Consensus        42 eValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~   74 (265)
                      =||||||+|. ||++..  ..+.+.+..|++..
T Consensus        14 vVaLlvfGP~-KLP~~~--r~lGk~ir~~K~~~   43 (158)
T PRK04098         14 VVAIIFLGPD-KLPQAM--VDIAKFFKAVKKTI   43 (158)
T ss_pred             HHHHhhcCch-HHHHHH--HHHHHHHHHHHHHH
Confidence            3789999986 899887  36888888888764

>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3

Probab=87.16  E-value=0.18  Score=28.88  Aligned_cols=15  Identities=27%  Similarity=0.700  Sum_probs=12.0

Q ss_pred             ceeeeeeccCCCccc
Q 024640           42 EVALIIFSNRGKLYE   56 (265)
Q Consensus        42 eValIiFS~~Gkl~e   56 (265)
                      |-.+.+|||.|+||.
T Consensus         2 D~~~t~FSp~Grl~Q   16 (23)
T PF10584_consen    2 DRSITTFSPDGRLFQ   16 (23)
T ss_dssp             SSSTTSBBTTSSBHH
T ss_pred             CCCceeECCCCeEEe
Confidence            345779999999985

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=80.30  E-value=3.9  Score=28.78  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=25.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhHHHHHh
Q 024640          143 TQCMVDQLSDLQKREQVLLELNKGLRKK  170 (265)
Q Consensus       143 ~qlm~~qi~~LqkKe~~L~eeN~~L~~k  170 (265)
                      -+.+.++|.+|..+...|+.||..|+..
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4578899999999999999999999988

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	265
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-15
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		3e-15
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-14
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		5e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		2e-10
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		8e-10
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-09

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 50/61 (81%)
Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
          MGR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ S+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60
Query: 61 P 61
Sbjct: 61 D 61

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 SIMKTLERY 70
           + K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-AST 59
Query: 62 SIMKTLERY 70
           + K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59
Query: 62 SIMKTLERY 70
           + K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 49/60 (81%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ S+ 
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTD 60

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 54/69 (78%), Gaps = 1/69 (1%)
Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVL DAE+ALIIF++  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59
Query: 62 SIMKTLERY 70
           + K L +Y
Sbjct: 60 DMDKVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 3  RGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 3  RGRVELKR--IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          RGRV++K   I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 3  RGRVELKR--IENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
          RGRV++K   I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	265
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	7e-47
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-45
1egw_A	77	MADS box transcription enhancer factor 2, polypept	6e-45
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-44
1hbx_A	92	SRF, serum response factor; gene regulation, trans	4e-44
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  150 bits (381), Expect = 7e-47
 Identities = 44/97 (45%), Positives = 63/97 (64%), Gaps = 7/97 (7%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 SIMKTLERYHRCSFGAHEANRPPIETQSTYQEYLRLK 98
           + K L +Y   +   HE+      T S   E L  K
Sbjct: 60 DMDKVLLKYTEYN-EPHESR-----TNSDIVEALNKK 90

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  147 bits (372), Expect = 2e-45
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
             R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  +
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-T 74

Query: 61  PSIMKTLERYHRCSFGAHEANRPPIE 86
           P     + +    +      N P  E
Sbjct: 75  PKFEPIVTQQEGRNLIQACLNAPDDE 100

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  145 bits (367), Expect = 6e-45
 Identities = 39/79 (49%), Positives = 58/79 (73%), Gaps = 2/79 (2%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ S+ 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 SIMKTLERYHRCSFGAHEA 80
           + K L +Y   +   HE+
Sbjct: 60 DMDKVLLKYTEYN-EPHES 77

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  144 bits (365), Expect = 2e-44
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 67

Query: 61 PSIMKTLERYHRCSFGAHEANRPPIETQST 90
            +   +      +      N P    +S 
Sbjct: 68 RKLQPMITSETGKALIQTCLNSPDSPPRSD 97

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  143 bits (363), Expect = 4e-44
 Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 68

Query: 61 PSIMKTLERYHRCSFGAHEANRP 83
            +   +      +      N P
Sbjct: 69 RKLQPMITSETGKALIQTCLNSP 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 9e-09
 Identities = 46/286 (16%), Positives = 85/286 (29%), Gaps = 78/286 (27%)

Query: 15  INRQVTFAKRRNGL--LKKAYEL----------SVL----CDAEVALIIFSNR------G 52
           ++R   + K R  L  L+ A  +          + +    C +         +       
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 53  KLYEFCSSP-SIMKTLER-YHR-----CSFGAHEANRPPIETQSTYQEYLRLKTAVELLQ 105
                C+SP ++++ L++  ++      S   H +N   +   S   E  RL     L  
Sbjct: 191 N----CNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRL-----LKS 240

Query: 106 RSQRN-LLGEDLDPLSTKE-LEQLEHQ---LETSLKHVRSTKTQCMVDQLSDLQKREQVL 160
           +   N LL   L  +   +           L T       T+ + + D LS        L
Sbjct: 241 KPYENCLL--VLLNVQNAKAWNAFNLSCKILLT-------TRFKQVTDFLSAATTTHISL 291

Query: 161 LELNKGLRK---KAFLGNYT-----------CLTTPPFTQLDESNIAHQVPPHRLAWEAA 206
              +  L     K+ L  Y              T P       S IA  +      W+  
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP----RRLSIIAESIRDGLATWDNW 347

Query: 207 SAGQNITYNRYPVQSEGFFQPLSGGTPILQIGYNPMG--SEEAHIP 250
              +++  ++     E     L       +  ++ +      AHIP
Sbjct: 348 ---KHVNCDKLTTIIESSLNVLE--PAEYRKMFDRLSVFPPSAHIP 388

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	83.84

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.3e-38  Score=235.45  Aligned_cols=73  Identities=51%  Similarity=0.864  Sum_probs=69.4

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCC
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSF   75 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~   75 (265)
                      ||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|.+||+||++++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~-~~~~il~ry~~~~~   73 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNE   73 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC--
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC-CHHHHHHHHHhccC
Confidence            89999999999999999999999999999999999999999999999999999999975 79999999998764

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=6.9e-38  Score=237.18  Aligned_cols=74  Identities=50%  Similarity=0.845  Sum_probs=71.2

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcCCC
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCSFG   76 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~~~   76 (265)
                      ||+||+|++|||+++|||||+|||+||||||+|||||||||||||||||+||+|+|+|+ +|.+||+||++++..
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~-~~~~il~rY~~~~~~   74 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEYNEP   74 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHCCSC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC-CHHHHHHHHHhcCcc
Confidence            89999999999999999999999999999999999999999999999999999999984 899999999998654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=5.2e-37  Score=236.21  Aligned_cols=73  Identities=38%  Similarity=0.642  Sum_probs=69.9

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS   74 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~   74 (265)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++||+|+|+|+ +|..||+||....
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp-s~~~il~r~~G~~   88 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRN   88 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC-CHHHHHHHhhCCc
Confidence            899999999999999999999999999999999999999999999999999999999986 7999999997653

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=4e-36  Score=228.37  Aligned_cols=70  Identities=36%  Similarity=0.660  Sum_probs=67.4

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHh
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYH   71 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~   71 (265)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~-~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG-GGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC-CHHHHHhhhc
Confidence            999999999999999999999999999999999999999999999999999999999975 8999998774

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=6.4e-36  Score=231.51  Aligned_cols=77  Identities=32%  Similarity=0.619  Sum_probs=70.9

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHH-----HhhcCC
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLER-----YHRCSF   75 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeR-----Y~~~~~   75 (265)
                      |||+||+|++|||+++|||||+|||+||||||+||||||||||||||||++|++|+|+|+ +|..+|++     |.+++.
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~-~~~~vi~~~~Gk~l~~~c~   87 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGKALIQTCL   87 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG-GGGGGTSSHHHHHHHHHTT
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc-cHHHHHHhhhhhHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999975 89999997     666665


Q ss_pred             Ccc
Q 024640           76 GAH   78 (265)
Q Consensus        76 ~~~   78 (265)
                      ...
T Consensus        88 ~~~   90 (103)
T 1k6o_B           88 NSP   90 (103)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            443

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=83.84  E-value=5  Score=27.30  Aligned_cols=53  Identities=26%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             CCCCHHHHHHHHHHHHhchhhhhh--hhhhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 024640          117 DPLSTKELEQLEHQLETSLKHVRS--TKTQCMVDQLSDLQKREQVLLELNKGLRK  169 (265)
Q Consensus       117 ~~Ls~~EL~qLE~qLe~sL~~IRs--rK~qlm~~qi~~LqkKe~~L~eeN~~L~~  169 (265)
                      ++.++.|-.++.+.|-.+=.+|..  +-+.-+.+++.-||++.+.|+.+|..||.
T Consensus         8 gpit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A            8 GAVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            345566666666655555444431  23445788999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	265
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-38
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	4e-38
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	9e-37

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (320), Expect = 3e-38
 Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 1/82 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
           R ++E+K IENK  R VTF+KR++G++KKA+ELSVL   +V L++ S  G +Y F  +P
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-TP 61

Query: 62 SIMKTLERYHRCSFGAHEANRP 83
               + +    +      N P
Sbjct: 62 KFEPIVTQQEGRNLIQACLNAP 83

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 4e-38
 Identities = 37/71 (52%), Positives = 53/71 (74%), Gaps = 1/71 (1%)

Query: 2  GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSP 61
          GR ++++ RI ++ NRQVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++  S 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SIMKTLERYHR 72
           + K L +Y  
Sbjct: 60 DMDKVLLKYTE 70

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (310), Expect = 9e-37
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           GR +++++ I+NK+ R  TF+KR+ G++KKAYELS L   +V L++ S  G +Y F  +
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-T 60

Query: 61 PSIMKTLERYHRCSF 75
            +   +      + 
Sbjct: 61 RKLQPMITSETGKAL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	265
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.98

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-37  Score=223.86  Aligned_cols=71  Identities=52%  Similarity=0.902  Sum_probs=68.8

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhc
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRC   73 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~   73 (265)
                      ||+||+|++|||+.+|+|||+|||+||||||+|||||||||||||||||+|++|+|+|+ ++.+||+||.++
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~-~~~~vl~ry~~~   71 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST-DMDKVLLKYTEY   71 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS-CHHHHHHHHHHC
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCC-CHHHHHHHHhcC
Confidence            89999999999999999999999999999999999999999999999999999999985 799999999864

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-35  Score=218.98  Aligned_cols=72  Identities=35%  Similarity=0.624  Sum_probs=69.0

Q ss_pred             CCcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhc
Q 024640            1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRC   73 (265)
Q Consensus         1 MgR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~   73 (265)
                      +||+||+|++|||+.+|+|||+|||+||||||+|||||||||||||||||+|++|+|+|+ ++..+|+||...
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~-~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR-KLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECG-GGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCC-CHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999999999974 899999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=4.4e-35  Score=217.97  Aligned_cols=72  Identities=39%  Similarity=0.657  Sum_probs=69.2

Q ss_pred             CcccceeeeeccCCCcceehhhhccchhhhhhhhhcccCcceeeeeeccCCCcccccCchhHHHHHHHHhhcC
Q 024640            2 GRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSPSIMKTLERYHRCS   74 (265)
Q Consensus         2 gR~Kv~ikrIen~~~RqvTfsKRr~GL~KKA~ELSvLCdaeValIiFS~~Gkl~ef~S~~sm~~iLeRY~~~~   74 (265)
                      ||+||+|++|||+.+|+|||+|||+||||||+||||||||+||||||||+|++|+|+|+ +|..||+||...+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp-~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP-KFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT-TTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCC-CHHHHHHHHhccc
Confidence            89999999999999999999999999999999999999999999999999999999974 8999999998754