Citrus Sinensis ID: 024832

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEccEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEEccccccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccHEEcccccccccccc
Coil and Loop (DISEMBL)
mygqsqsmnissqmsgggaaadeddvsvaaddhhlsydphsaleNGIVVVEdvahdsgyatggnelsnssqltlsfrgqvyvfdsvtpdkgiadypakctqpqraaSLDRFRQKRKERCFDKKVRYSVRQEVALRMQRnkgqftsakkceggalgwsnaqdpgqddspsetscthcgisskstpmmrrgpsgprslcnacglfwankGALRDlgkkmedqpltpaeqgegevndsdcgtaahtdnelvsfsndddsaliseh
Flexible Loop (DISEMBL)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATggnelsnssqlTLSFRGQVYVFDSVTPDKGIAdypakctqpqraasldrfrqkrkercfdkkvrysvRQEVAlrmqrnkgqftsakkceggaLGWSNAQDPGQDDSPSETSCTHcgisskstpmmrRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTdnelvsfsndddsaliseh
Low Complexity Region (SEG)
MYgqsqsmnissqmsgggaaadeddvsvaaddHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Disordered region (IsUnstruct)
****************************************SALENGIVVVEDVAHDSGYATG********QLTLSFRGQVYVFDSVTPDKGIADYPAKC*******************CFDKKVRYSVR******************************************************************LCNACGLFWANKGALR***************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************************************KKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWA*********************************************************
Disordered Region (DISEMBL)
**********************EDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNA*****************GISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLT************DCGTAAHTDNELVSFSNDDDSALISEH
Disordered Region (DISPRO)
*****************************************************AHDSGY*T**NELSNSSQLTLSFRGQVYVFDSVTP*********KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRN******************************ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA*****************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDKGIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9LRH6	309	GATA transcription factor	yes	no	0.984	0.834	0.440	1e-60
Q8H1G0	302	GATA transcription factor	no	no	0.721	0.625	0.448	2e-45
Q8GXL7	297	GATA transcription factor	no	no	0.572	0.505	0.510	9e-45
Q93WK5	727	Two-component response re	no	no	0.160	0.057	0.595	1e-07
Q8L500	468	Two-component response re	no	no	0.179	0.100	0.531	4e-07
Q689G9	518	Two-component response re	no	no	0.160	0.081	0.595	4e-07
Q689G6	623	Two-component response re	no	no	0.160	0.067	0.571	1e-06
Q6LA42	558	Two-component response re	no	no	0.160	0.075	0.547	2e-06
Q9LVG4	495	Two-component response re	no	no	0.171	0.090	0.533	3e-06
Q00858	457	Cutinase gene palindrome-	N/A	no	0.156	0.089	0.534	4e-06

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  233 bits (593), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 138/313 (44%), Positives = 178/313 (56%), Gaps = 55/313 (17%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYD-----PHSALENGIV--VVEDV 53
           M+G+  S+  ++Q+    A+A ED VS +A   H+ YD     PH     G    ++ D 
Sbjct: 1   MFGR-HSIIPNNQIGTASASAGEDHVSASATSGHIPYDDMEEIPHPDSIYGAASDLIPDG 59

Query: 54  AHDSGYATGGNEL------SNSSQLTLSFRGQVYVFDSVTPDK----------------- 90
           +    + + G+EL        ++QLT+SFRGQVYVFD+V  DK                 
Sbjct: 60  SQLVAHRSDGSELLVSRPPEGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPG 119

Query: 91  -------------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQ 137
                         + +Y ++C+ PQRA SLDRFR+KR  RCF+KKVRY VRQEVALRM 
Sbjct: 120 PQVMELAQQQNHMPVVEYQSRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMA 179

Query: 138 RNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLC 197
           RNKGQFTS+K  +G A      QD  QDD+  E SCTHCGISSK TPMMRRGPSGPR+LC
Sbjct: 180 RNKGQFTSSKMTDG-AYNSGTDQDSAQDDAHPEISCTHCGISSKCTPMMRRGPSGPRTLC 238

Query: 198 NACGLFWANKGALRDLGKKMEDQPLTPAEQGEG--------EVNDSDCGTAAHTDNELVS 249
           NACGLFWAN+G LRDL KK E+  L   +  +G         +N        HT   +VS
Sbjct: 239 NACGLFWANRGTLRDLSKKTEENQLALMKPDDGGSVADAANNLNTEAASVEEHT--SMVS 296

Query: 250 FSNDDDSALISEH 262
            +N D+S L+ +H
Sbjct: 297 LANGDNSNLLGDH 309

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 114/254 (44%), Positives = 137/254 (53%), Gaps = 65/254 (25%)

Query: 26  VSVAADDHHLSYDPHSA--LENGIVVVEDVAHDSGYATG-------------GNELSNSS 70
           +  A D  H+ ++ H+   + NG  +V+D A D G A G             GN   N  
Sbjct: 13  IREAQDPMHVQFEHHALHHIHNGSGMVDDQA-DDGNAGGMSEGVETDIPSHPGNVTDNRG 71

Query: 71  -----------QLTLSFRGQVYVFDSVTPDK----------------------------- 90
                      QLTLSF+GQVYVFDSV P+K                             
Sbjct: 72  EVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPGLGSPHQNNR 131

Query: 91  --GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKK 148
              +   P + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK 
Sbjct: 132 VSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKS 191

Query: 149 C--EGGALG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 201
              E  + G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACG
Sbjct: 192 NNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACG 251

Query: 202 LFWANKGALRDLGK 215
           L WANKGA RDL K
Sbjct: 252 LMWANKGAFRDLSK 265

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  180 bits (457), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 96/188 (51%), Positives = 113/188 (60%), Gaps = 38/188 (20%)

Query: 66  LSNSSQLTLSFRGQVYVFDSVTPDK-------------------------------GIAD 94
           + N  QLTLSF+GQVYVFD V+P+K                               G++ 
Sbjct: 74  IENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTLGSPHQNNRVLGLSG 133

Query: 95  YPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGG 152
            P + + PQR ASL RFR+KRK R FDK +RY+VR+EVALRMQR KGQFTSAK    + G
Sbjct: 134 TPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSG 193

Query: 153 ALG--WSNAQD---PGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANK 207
           + G  W + Q     G +    E  C HCG S KSTPMMRRGP GPR+LCNACGL WANK
Sbjct: 194 STGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRTLCNACGLMWANK 253

Query: 208 GALRDLGK 215
           G LRDL K
Sbjct: 254 GTLRDLSK 261

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
           QR A+L +FRQKRKERCF KKVRY  R+++A +  R +GQF 
Sbjct: 668 QREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFV 709

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 98  KCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
           + ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF 
Sbjct: 411 RWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQFV 457

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q689G9|PRR1_ORYSJ Two-component response regulator-like PRR1 OS=Oryza sativa subsp. japonica GN=PRR1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/42 (59%), Positives = 32/42 (76%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
           +RAA+L +FR KRKERCFDKKVRY  R+++A    R +GQF 
Sbjct: 442 RRAAALAKFRLKRKERCFDKKVRYVNRKKLAETRPRVRGQFV 483

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q689G6|PRR95_ORYSJ Two-component response regulator-like PRR95 OS=Oryza sativa subsp. japonica GN=PRR95 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/42 (57%), Positives = 32/42 (76%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
           QR A+L++FR KRK+RCF+KKVRY  R+ +A +  R KGQF 
Sbjct: 573 QREAALNKFRLKRKDRCFEKKVRYQSRKLLAEQRPRVKGQFV 614

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6LA42|APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
           QR A+L +FR KRK+RC++KKVRY  R+++A +  R KGQF 
Sbjct: 508 QREAALTKFRMKRKDRCYEKKVRYESRKKLAEQRPRIKGQFV 549

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVG4|APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/45 (53%), Positives = 32/45 (71%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 147
           QR A+L +FR KRKERCF+KKVRY  R+++A +    KGQF   +
Sbjct: 441 QREAALMKFRLKRKERCFEKKVRYHSRKKLAEQRPHVKGQFIRKR 485

Controls photoperiodic flowering response. Component of the circadian clock. Controls the degradation of APRR1/TOC1 by the SCF(ZTL) complex. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)

Query: 170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRD 212
           E  CT CG  +  +P  R+GPSGP++LCNACGL WA K   R+
Sbjct: 399 EYVCTDCG--TLDSPEWRKGPSGPKTLCNACGLRWAKKEKKRN 439

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
224084544	288	predicted protein [Populus trichocarpa]	0.969	0.881	0.591	1e-83
225459060	294	PREDICTED: GATA transcription factor 25	0.969	0.863	0.54	3e-81
224067118	290	predicted protein [Populus trichocarpa]	0.954	0.862	0.559	9e-80
356552974	307	PREDICTED: GATA transcription factor 25-	0.980	0.837	0.565	4e-79
356498865	310	PREDICTED: GATA transcription factor 25-	0.965	0.816	0.562	1e-77
302142081	248	unnamed protein product [Vitis vinifera]	0.812	0.858	0.578	2e-74
302398803	306	GATA domain class transcription factor [	0.977	0.836	0.525	9e-73
255572876	324	GATA transcription factor, putative [Ric	0.786	0.635	0.586	2e-70
449469795	293	PREDICTED: GATA transcription factor 25-	0.969	0.866	0.511	8e-69
363808184	286	uncharacterized protein LOC100784789 [Gl	0.812	0.744	0.574	2e-68

>gi|224084544|ref|XP_002307332.1| predicted protein [Populus trichocarpa] gi|222856781|gb|EEE94328.1| predicted protein [Populus trichocarpa]

 Score =  315 bits (807), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 175/296 (59%), Positives = 196/296 (66%), Gaps = 42/296 (14%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGI-VVVEDVAHDSGY 59
           MY  SQ MN+ +Q++  G     DD    AD   + +  H   E+G   VV+DV+ +S Y
Sbjct: 1   MYTHSQPMNVHNQIASPGV----DDDRAPADS--IDHHHHIHYEDGTPTVVDDVSPESVY 54

Query: 60  ATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDK--------------------- 90
              G   S         SSQLTL+FRGQVYVFDSVTPDK                     
Sbjct: 55  VNAGVAASELGIQPSDCSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTPGLEMTP 114

Query: 91  ----GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA 146
               G+ DYP++CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQFTSA
Sbjct: 115 QNQRGVVDYPSRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSA 174

Query: 147 KKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN 206
           KK EGG  GW   QD G DDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNACGLFWAN
Sbjct: 175 KKSEGG-YGWDGVQDSGLDDSQQETSCTHCGTNSKSTPMMRRGPSGPRSLCNACGLFWAN 233

Query: 207 KGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH 262
           +G LRDL KK  D   T  EQGE E NDSD GTA  TDN LV+++N  D+ALI+EH
Sbjct: 234 RGTLRDLTKKT-DHSATLIEQGEAEANDSDSGTAIDTDNNLVTYANGGDTALITEH 288

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459060|ref|XP_002283753.1| PREDICTED: GATA transcription factor 25 [Vitis vinifera]

 Score =  307 bits (787), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 162/300 (54%), Positives = 201/300 (67%), Gaps = 46/300 (15%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDD--VSVAADDHHLSYDPHSALENGIV----VVEDVA 54
           MYG  Q M++ +Q++G     D+DD   S + D+ H+ YD H  L++G+V    V  DV 
Sbjct: 1   MYGHPQHMSMHNQIAG-----DDDDGAASESIDNPHVHYDAH-VLQDGVVPGMEVAGDVP 54

Query: 55  HDSGYATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDK------------------- 90
            D+ Y   G+E++      ++QLTLSFRGQVYVFDSVT +K                   
Sbjct: 55  SDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPELSSIAHN 114

Query: 91  ---------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 141
                     + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALRMQRNKG
Sbjct: 115 MEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALRMQRNKG 174

Query: 142 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 201
           QF+S+KK EG    W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRSLCNACG
Sbjct: 175 QFSSSKKSEG-TFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRSLCNACG 233

Query: 202 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALISE 261
           LFWAN+G+LRDL KK +D  L   E+G+GE NDSDCGT+ + +N  V+FSN D+ ALI E
Sbjct: 234 LFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDNPALIPE 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067118|ref|XP_002302364.1| predicted protein [Populus trichocarpa] gi|222844090|gb|EEE81637.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 169/302 (55%), Positives = 191/302 (63%), Gaps = 52/302 (17%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDP-----HSALENGI--VVVEDV 53
           MY  SQ MN+ +Q+           VS   DD     DP     H   E+G   VVVEDV
Sbjct: 1   MYTPSQPMNVHNQI-----------VSPGVDDDGAPADPIDHHHHIHYEDGTPAVVVEDV 49

Query: 54  AHDSGYATGGNELSN--------SSQLTLSFRGQVYVFDSVTPDK--------------- 90
           + DS Y T G   S         SSQLTL+FRGQVYVFDSVTPDK               
Sbjct: 50  SPDSVYVTAGVAASELGIQPSDGSSQLTLTFRGQVYVFDSVTPDKVQAVLLLLGGCELTP 109

Query: 91  ----------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNK 140
                     G+ +YP +CTQPQRAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNK
Sbjct: 110 GLELTPQNQRGVGEYPPRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNK 169

Query: 141 GQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 200
           GQFTSAKK EGG  GW   QD  QDDS  ETSCTHCG +SKSTPMMRRGPSGPRSLCNAC
Sbjct: 170 GQFTSAKKSEGG-YGWDGGQDSAQDDSQHETSCTHCGTNSKSTPMMRRGPSGPRSLCNAC 228

Query: 201 GLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDDSALIS 260
           GLFWAN+G LRD  KK  +  + P + GE E N+SD   A +T N  V+++N  D+ALI+
Sbjct: 229 GLFWANRGTLRDHSKKALEHSVAPIDLGETEANESDSVPAINTHNNPVTYANGGDTALIT 288

Query: 261 EH 262
           +H
Sbjct: 289 DH 290

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552974|ref|XP_003544834.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  300 bits (768), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 199/297 (67%), Gaps = 40/297 (13%)

Query: 1   MYGQSQSMNISSQMSGGGAAADE-DDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGY 59
           MYG SQ +++ SQ+ GG +     ++ +V    HH+ Y+ H+  +   VVVEDV  D+ Y
Sbjct: 6   MYGHSQPLSMPSQIGGGESDDGSGNEHAVDGHHHHIQYETHALEDGAAVVVEDVTSDAVY 65

Query: 60  ATGGNELSNSSQLTLSFRGQVYVFDSVTPDK----------------------------- 90
            +GG     SSQLTLSFRGQVYVFD+VTPDK                             
Sbjct: 66  VSGGGGPVESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCVDPGAQHNQ 125

Query: 91  -GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC 149
            G  ++P KC+ P RAASL RFRQKRKERCFDKKVRYSVRQEVALRM RNKGQFTS+KK 
Sbjct: 126 RGSMEFP-KCSLPHRAASLHRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKK- 183

Query: 150 EGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA 209
           + GA  +   QD GQDDS SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWAN+GA
Sbjct: 184 QDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGA 243

Query: 210 LRDLGKKMEDQPLTPAEQGEGEVNDSDCGTA----AHTDNELVSFSNDDDSALISEH 262
           LRDL K+ ++  L P EQ + E NDSDC TA    AH  N L +FS  D+ AL+++H
Sbjct: 244 LRDLSKRNQEHSLPPVEQVD-EGNDSDCRTATADPAH--NNLPAFSEHDNPALVADH 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498865|ref|XP_003518268.1| PREDICTED: GATA transcription factor 25-like [Glycine max]

 Score =  295 bits (755), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/302 (56%), Positives = 197/302 (65%), Gaps = 49/302 (16%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVS-----VAADDHHLSYDPHSALENGI----VVVE 51
           MYG SQ +NI S++  G    + DD S     V    HH+ Y+ H AL++G     VVVE
Sbjct: 6   MYGPSQPLNIPSRIGAG----ERDDGSGNEPAVDGHHHHIQYETH-ALDDGAAGGAVVVE 60

Query: 52  DVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTPDK--------------------- 90
           DV  D+ Y +GG     SSQLTLSFRGQVYVFD+VTPDK                     
Sbjct: 61  DVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSGGSPCV 120

Query: 91  ---------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKG 141
                    G  ++P KC+ PQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRM RNKG
Sbjct: 121 DPGAQQNQRGSMEFP-KCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKG 179

Query: 142 QFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACG 201
           QFTS+KK + GA  +   QD GQDDS SETSC HCG SSKSTPMMRRGPSGPRSLCNACG
Sbjct: 180 QFTSSKK-QDGANSYGTDQDSGQDDSQSETSCKHCGTSSKSTPMMRRGPSGPRSLCNACG 238

Query: 202 LFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAH--TDNELVSFSNDDDSALI 259
           LFWAN+GALRDL K+ ++  L P EQ +G  ND DC TAA     N L +FS   + AL+
Sbjct: 239 LFWANRGALRDLSKRNQEHSLPPVEQVDGG-NDPDCRTAAADPAQNNLAAFSEPVNPALV 297

Query: 260 SE 261
           ++
Sbjct: 298 AD 299

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142081|emb|CBI19284.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (728), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/247 (57%), Positives = 170/247 (68%), Gaps = 34/247 (13%)

Query: 49  VVEDVAHDSGYATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDK------------- 90
           V  DV  D+ Y   G+E++      ++QLTLSFRGQVYVFDSVT +K             
Sbjct: 3   VAGDVPSDAVYVADGSEVALQPSDATNQLTLSFRGQVYVFDSVTHEKVRSVLLLLGTPEL 62

Query: 91  ---------------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALR 135
                           + D+P    QP RAASL+RFRQKRKERCFDKK+RY+VRQEVALR
Sbjct: 63  SSIAHNMEIVPQNQRALTDFPGPYNQPHRAASLNRFRQKRKERCFDKKIRYNVRQEVALR 122

Query: 136 MQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRS 195
           MQRNKGQF+S+KK EG    W + QD GQD+SP ET CTHCG SSKSTPMMRRGP+GPRS
Sbjct: 123 MQRNKGQFSSSKKSEG-TFSWDSVQDSGQDESPPETLCTHCGTSSKSTPMMRRGPTGPRS 181

Query: 196 LCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAHTDNELVSFSNDDD 255
           LCNACGLFWAN+G+LRDL KK +D  L   E+G+GE NDSDCGT+ + +N  V+FSN D+
Sbjct: 182 LCNACGLFWANRGSLRDLSKKNQDHSLNQIERGDGEANDSDCGTSGYINNNHVAFSNSDN 241

Query: 256 SALISEH 262
            ALI E 
Sbjct: 242 PALIPEQ 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398803|gb|ADL36696.1| GATA domain class transcription factor [Malus x domestica]

 Score =  279 bits (713), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 157/299 (52%), Positives = 192/299 (64%), Gaps = 43/299 (14%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVEDVAHDSGYA 60
           MYG SQ M + + +       D+   + + D+ H+ YD H+  + GIVVVEDV+ D  Y 
Sbjct: 14  MYGHSQDMTMPNPIPA--CDDDDAGAADSIDNAHIQYDSHTLEDGGIVVVEDVSSDGVYV 71

Query: 61  TGGNELSN--------SSQLTLSFRGQVYVFDSVTPDK---------------------- 90
            GG+  S         SSQLTLSFRGQV+VFD+VTP+K                      
Sbjct: 72  QGGSASSELRGPPYDGSSQLTLSFRGQVFVFDAVTPEKVQAVLLLLGGNELSPSAQGTEL 131

Query: 91  ------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFT 144
                  + DYP +C+QP RAASL RFRQKRKERCFDKKVRY VRQEVALRMQRNKGQF+
Sbjct: 132 ASQNQRAMEDYP-RCSQPHRAASLIRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFS 190

Query: 145 SAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFW 204
           S+K+ +G +  WS  Q+ GQ+D  +ETSC HCGISSKSTPMMRRGPSGPRSLCNACGLFW
Sbjct: 191 SSKRSDGDS-NWSAGQESGQEDCHAETSCKHCGISSKSTPMMRRGPSGPRSLCNACGLFW 249

Query: 205 ANKGALRDLGKKMEDQPLTPAEQ-GEGEVNDSDCGTAAHTDNELVSFSNDDDSALISEH 262
           AN+G LR+L K+  D  +   EQ GE +  D D  T     N LV FSN D+SAL++E+
Sbjct: 250 ANRGGLRELSKRSHD--IKRIEQGGEPDTKDLDSVTTIDAHNNLVPFSNGDNSALVAEN 306

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572876|ref|XP_002527370.1| GATA transcription factor, putative [Ricinus communis] gi|223533289|gb|EEF35042.1| GATA transcription factor, putative [Ricinus communis]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/249 (58%), Positives = 169/249 (67%), Gaps = 43/249 (17%)

Query: 1   MYGQSQSMNISSQMSG--GGAAADEDDVSV-AADDHHLSYDPHSALENGIVVVEDVAHDS 57
           MY  SQSMN+  Q+    G    DED V+  + D HH+ Y+  +A   G+V+ +DV+HDS
Sbjct: 1   MYSHSQSMNVHHQIHTPTGPTGDDEDGVAADSIDHHHIRYEDGNA--TGVVLEDDVSHDS 58

Query: 58  GY---ATGGNELS-----NSSQLTLSFRGQVYVFDSVTPDK------------------- 90
            Y   +  G+EL+      SSQLTL+FRGQVYVFD+VTPDK                   
Sbjct: 59  VYVPTSAAGSELAIQGNDVSSQLTLTFRGQVYVFDAVTPDKVQAVLLLLGGCELTSGPHG 118

Query: 91  ----------GIADYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNK 140
                      + DYP +CTQPQRAASL+RFRQKRKER FDKKVRYSVRQEVALRMQRNK
Sbjct: 119 LEVASQNQRSAVVDYPGRCTQPQRAASLNRFRQKRKERNFDKKVRYSVRQEVALRMQRNK 178

Query: 141 GQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNAC 200
           GQFTS+KK + G  GW   QD GQDDS  ETSCTHCG SSKSTPMMRRGPSGPRSLCNAC
Sbjct: 179 GQFTSSKKSD-GTYGWGGGQDSGQDDSQQETSCTHCGTSSKSTPMMRRGPSGPRSLCNAC 237

Query: 201 GLFWANKGA 209
           GLFWAN+G+
Sbjct: 238 GLFWANRGS 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469795|ref|XP_004152604.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus] gi|449511422|ref|XP_004163952.1| PREDICTED: GATA transcription factor 25-like [Cucumis sativus]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 154/301 (51%), Positives = 190/301 (63%), Gaps = 47/301 (15%)

Query: 1   MYGQSQSMNISSQMSGGGAAADEDDVSVAADDHHLSYDPHSALENGIVVVED---VAHDS 57
           MY ++Q + +  Q+      AD  D     D+  + Y  HS LE+G+ V      +  D+
Sbjct: 1   MYARAQPLTMGDQI------ADCSDTGEPLDNRLVRYGAHS-LEDGVGVGGMVEVLNPDA 53

Query: 58  GYATGGN-------ELSNSSQLTLSFRGQVYVFDSVTPDKGIA----------------- 93
            Y   G+           S+QLTLSFRGQVY+FD+V+P+K  A                 
Sbjct: 54  VYVPAGDGSDLAVQRSDGSNQLTLSFRGQVYLFDAVSPEKVQAVLLLLGGCELSSGQQSV 113

Query: 94  -----------DYPAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQ 142
                      D P + +QPQRAASL+RFRQKRKERCF+KKVRY VRQEVALRMQRNKGQ
Sbjct: 114 DLVNPNQRNALDLPGRSSQPQRAASLNRFRQKRKERCFEKKVRYGVRQEVALRMQRNKGQ 173

Query: 143 FTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGL 202
           FTS+KK +G +    N  + GQD+SPSETSCT+CGISS STPMMRRGPSGPRSLCNACGL
Sbjct: 174 FTSSKKLDG-SYSHGNVSELGQDESPSETSCTNCGISSMSTPMMRRGPSGPRSLCNACGL 232

Query: 203 FWANKGALRDLGKKMEDQPLTPAEQGEGE-VNDSDCGTAAHTDNELVSFSNDDDSALISE 261
           FWAN+G LRDL K+ +D P+TPAEQ E +   D DC    H  + LVSFSN D +AL++E
Sbjct: 233 FWANRGTLRDLPKRSQDHPVTPAEQCESDGGKDLDCRHGNHAPSNLVSFSNGDTAALMAE 292

Query: 262 H 262
           H
Sbjct: 293 H 293

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808184|ref|NP_001242484.1| uncharacterized protein LOC100784789 [Glycine max] gi|255641630|gb|ACU21087.1| unknown [Glycine max]

 Score =  264 bits (675), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 143/249 (57%), Positives = 165/249 (66%), Gaps = 36/249 (14%)

Query: 29  AADDHHLSYDPHSALENGIVVVEDVAHDSGYATGGNELSNSSQLTLSFRGQVYVFDSVTP 88
           AA DHH+ Y  H+  E+G   VE+V   S        +++SSQLT+SFRGQVYVFD+VTP
Sbjct: 35  AASDHHIHYSSHTIEEDGGATVEEV---SAVPPLEISINDSSQLTISFRGQVYVFDAVTP 91

Query: 89  DK----------------------------GIADYPAKCTQPQRAASLDRFRQKRKERCF 120
           DK                            G  +YPAKC+ PQRAASL+RFRQKRKERCF
Sbjct: 92  DKVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCF 151

Query: 121 DKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSETSCTHCGISS 180
           DKKVRYSVRQEVALRM RN+GQFTS+K  + G   W + Q+ GQD   SET CTHCGISS
Sbjct: 152 DKKVRYSVRQEVALRMHRNRGQFTSSKN-QDGTNSWGSDQESGQDAVQSETLCTHCGISS 210

Query: 181 KSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ-GEG-EVNDSDC- 237
           KSTPMMRRGPSGPRSLCNACGLFWAN+G LRDL K+ ++  L P EQ  EG   ND DC 
Sbjct: 211 KSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNNDFDCR 270

Query: 238 -GTAAHTDN 245
            G  A  +N
Sbjct: 271 SGIPAQHNN 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.458	0.397	0.637	2.9e-44
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.591	0.521	0.523	8e-37
TAIR|locus:2062749	183	AT2G46670 "AT2G46670" [Arabido	0.167	0.240	0.568	5.8e-10
TAIR|locus:2044376	468	PRR9 "pseudo-response regulato	0.167	0.094	0.568	1.1e-07
CGD|CAL0003020	688	GAT1 [Candida albicans (taxid:	0.507	0.193	0.285	1.2e-06
UNIPROTKB|Q5A432	688	GAT1 "Putative uncharacterized	0.507	0.193	0.285	1.2e-06
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.190	0.335	0.454	3.1e-06
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.229	0.135	0.430	5.4e-06
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.229	0.135	0.430	5.4e-06
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.202	0.381	0.406	1.9e-05

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 81/127 (63%), Positives = 93/127 (73%)

Query:    96 PAKCTQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKC--EGGA 153
             P + + PQR ASL RFR+KRK R FDKK+RY+VR+EVALRMQRNKGQFTSAK    E  +
Sbjct:   139 PQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRNKGQFTSAKSNNDEAAS 198

Query:   154 LG--WSNAQDPGQDDSPS---ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 208
              G  W + Q    + S +   E SC HCGI  KSTPMMRRGP+GPR+LCNACGL WANKG
Sbjct:   199 AGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAGPRTLCNACGLMWANKG 258

Query:   209 ALRDLGK 215
             A RDL K
Sbjct:   259 AFRDLSK 265

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 89/170 (52%), Positives = 107/170 (62%)

Query:    62 GGNELSNSSQLTLSFRGQVYVFDSVTPDKGIADYPAKCTQPQRAASLDRFRQKRKERCFD 121
             GG E+ ++   TL   G  +  + V    G++  P + + PQR ASL RFR+KRK R FD
Sbjct:   107 GGREVPHTLPTTL---GSPHQNNRVL---GLSGTPQRLSVPQRLASLLRFREKRKGRNFD 160

Query:   122 KKVRYSVRQEVALRMQRNKGQFTSAKKC--EGGALG--WSNAQD---PGQDDSPSETSCT 174
             K +RY+VR+EVALRMQR KGQFTSAK    + G+ G  W + Q     G +    E  C 
Sbjct:   161 KTIRYTVRKEVALRMQRKKGQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCR 220

Query:   175 HCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP 224
             HCG S KSTPMMRRGP GPR+LCNACGL WANKG LRDL K     P TP
Sbjct:   221 HCGTSEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKV--PPPQTP 268

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062749 AT2G46670 "AT2G46670" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query:   100 TQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 143
             ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF
Sbjct:   128 SRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 171

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044376 PRR9 "pseudo-response regulator 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
 Identities = 25/44 (56%), Positives = 34/44 (77%)

Query:   100 TQPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQF 143
             ++ QR A+L +FR KRK+RCFDKKVRY  R+++A +  R KGQF
Sbjct:   413 SRSQREAALMKFRLKRKDRCFDKKVRYQSRKKLAEQRPRVKGQF 456

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0007623 "circadian rhythm" evidence=IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IGI

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0003677 "DNA binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

CGD|CAL0003020 GAT1 [Candida albicans (taxid:5476)]

 Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 42/147 (28%), Positives = 68/147 (46%)

Query:   112 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 171
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:   172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGE 231
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +   +   ++G   
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD--VIKKRQRGNNN 491

Query:   232 VNDSDCGTAAHTDN---ELVSFSNDDD 255
              + +  GT  +++N   + +S  N+ D
Sbjct:   492 GSGNSSGTTNNSNNYNNKSISKKNEID 518

GO:0009405 "pathogenesis" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0001080 "nitrogen catabolite activation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001076 "RNA polymerase II transcription factor binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0001077 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription" evidence=IEA

UNIPROTKB|Q5A432 GAT1 "Putative uncharacterized protein GAT1" [Candida albicans SC5314 (taxid:237561)]

 Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 42/147 (28%), Positives = 68/147 (46%)

Query:   112 RQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAKKCEGGALGWSNAQDPGQDDSPSET 171
             + KRK     K  + +   E  +    + G   + K     + G   A  P    S +  
Sbjct:   383 KSKRKST-ITKSKKKAASPETTIT---STGSTITTKSTNSNSTGKGTATGPAA--SNTGV 436

Query:   172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGE 231
             SCT+CG  +K+TP+ RR P G + LCNACGLF    G +R L  K +   +   ++G   
Sbjct:   437 SCTNCG--TKTTPLWRRNPQG-QPLCNACGLFLKLHGVVRPLSLKTD--VIKKRQRGNNN 491

Query:   232 VNDSDCGTAAHTDN---ELVSFSNDDD 255
              + +  GT  +++N   + +S  N+ D
Sbjct:   492 GSGNSSGTTNNSNNYNNKSISKKNEID 518

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0006808 "regulation of nitrogen utilization" evidence=IMP

GO:0009405 "pathogenesis" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 111 (44.1 bits), Expect = 3.1e-06, P = 3.1e-06
 Identities = 25/55 (45%), Positives = 33/55 (60%)

Query:   167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL-GKKMEDQ 220
             S  + SC  CG S   TP+ R GP+GP+SLCNACG+   N+   R L   + ED+
Sbjct:    37 SNEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGI--RNRKKRRTLISNRSEDK 87

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query:   170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGE 229
             E +C HC   S+ TP  RRGP G R+LCNACGLF++    ++  G +  D+ +   +Q  
Sbjct:   379 EITCQHC--CSQETPEWRRGPEGSRTLCNACGLFYSK--LIKKYGLREADKVMLHRKQ-T 433

Query:   230 GEVND 234
             G VND
Sbjct:   434 GTVND 438

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 28/65 (43%), Positives = 39/65 (60%)

Query:   170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGE 229
             E +C HC   S+ TP  RRGP G R+LCNACGLF++    ++  G +  D+ +   +Q  
Sbjct:   379 EITCQHC--CSQETPEWRRGPEGSRTLCNACGLFYSK--LIKKYGLREADKVMLHRKQ-T 433

Query:   230 GEVND 234
             G VND
Sbjct:   434 GTVND 438

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 104 (41.7 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 24/59 (40%), Positives = 33/59 (55%)

Query:   172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEG 230
             +C  CG S   TP+ R GP GP+SLCNACG+   N+   R  G   +++ L  +  G G
Sbjct:    37 TCADCGTSK--TPLWRGGPVGPKSLCNACGI--RNRKKRR--GGTEDNKKLKKSSSGGG 89

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRH6	GAT25_ARATH	No assigned EC number	0.4408	0.9847	0.8349	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00050602 hypothetical protein (289 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam06203	45	pfam06203, CCT, CCT motif	3e-19
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	1e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-13
pfam00320	36	pfam00320, GATA, GATA zinc finger	2e-12
pfam06200	36	pfam06200, tify, tify domain	2e-07
smart00979	36	smart00979, TIFY, This short possible domain is fo	3e-06
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	0.002

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 78.0 bits (193), Expect = 3e-19
 Identities = 21/44 (47%), Positives = 29/44 (65%)

Query: 104 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSAK 147
           R A+L R+++KRK R FDKK+RY+ R+ VA    R KG+F    
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQS 44

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 2/44 (4%)

Query: 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 211
            S  SC++CG  +  TP+ RRGPSG ++LCNACGL++   G L+
Sbjct: 1   GSGRSCSNCG--TTETPLWRRGPSGNKTLCNACGLYYKKHGGLK 42

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 62.4 bits (152), Expect = 3e-13
 Identities = 25/49 (51%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQ 220
           +C++CG  + +TP+ RRGPSG  +LCNACGL+W   G +R L K+ +DQ
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRKKDQ 47

Length = 54

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)

Query: 173 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 208
           C++CG  +  TP+ RRGP G R+LCNACGL++   G
Sbjct: 1   CSNCG--TTKTPLWRRGPDGNRTLCNACGLYYRKHG 34

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 13/24 (54%), Positives = 18/24 (75%)

Query: 67 SNSSQLTLSFRGQVYVFDSVTPDK 90
          + S+QLT+ + GQV VFD V P+K
Sbjct: 3  AESAQLTIFYGGQVCVFDDVPPEK 26

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 67 SNSSQLTLSFRGQVYVFDSVTPDK 90
            S QLT+ + G V VFD V P+K
Sbjct: 3  EGSQQLTIFYGGSVCVFDDVPPEK 26

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 103 QRAASLDRFRQKRKERCFDKKVRYSV 128
            R ASL RF +KRK+R       Y V
Sbjct: 3   ARKASLQRFLEKRKDRLVSAA-PYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.61
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.57
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.45
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.16
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.7
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.5
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	95.61
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	92.2
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	89.79
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	83.39

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.61  E-value=4.4e-16  Score=111.83  Aligned_cols=44  Identities=52%  Similarity=1.258  Sum_probs=41.7

Q ss_pred             cceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCccc
Q 024832          172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM  217 (262)
Q Consensus       172 ~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~  217 (262)
                      .|+||+++  .||+||+||.|..+|||||||||++++..||+.+..
T Consensus         1 ~C~~C~~~--~Tp~WR~g~~~~~~LCNaCgl~~~k~~~~rp~~~~~   44 (54)
T cd00202           1 ACSNCGTT--TTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKRK   44 (54)
T ss_pred             CCCCCCCC--CCcccccCCCCcchHHHHHHHHHHhcCCCCCcccCc
Confidence            59999998  999999999888999999999999999999999876

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.57  E-value=1.6e-15  Score=108.02  Aligned_cols=48  Identities=52%  Similarity=1.112  Sum_probs=43.7

Q ss_pred             CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC-CCCCcccC
Q 024832          169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL-RDLGKKME  218 (262)
Q Consensus       169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~-Rp~s~~~~  218 (262)
                      ....|+||+++  .||+||+||.|.++|||||||||++++.+ ||..+.++
T Consensus         2 ~~~~C~~C~~~--~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~~~~   50 (52)
T smart00401        2 SGRSCSNCGTT--ETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKD   50 (52)
T ss_pred             CCCCcCCCCCC--CCCccccCCCCCCcEeecccHHHHHcCCCCCccccccc
Confidence            35799999998  99999999999889999999999999998 88887764

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.45  E-value=1.3e-14  Score=96.04  Aligned_cols=35  Identities=54%  Similarity=1.288  Sum_probs=28.5

Q ss_pred             ceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCC
Q 024832          173 CTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGA  209 (262)
Q Consensus       173 C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~  209 (262)
                      |+||+++  .||+||++|.|..+|||+|||+|+++++
T Consensus         1 C~~C~tt--~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGTT--ETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT--S--T-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcCC--CCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            8999998  8999999999988899999999999985

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.16  E-value=1.6e-11  Score=85.36  Aligned_cols=43  Identities=47%  Similarity=0.779  Sum_probs=41.2

Q ss_pred             HHHHHHHHHhhhhhhcccceeeeehhHHHHHHhhhccCccccc
Q 024832          104 RAASLDRFRQKRKERCFDKKVRYSVRQEVALRMQRNKGQFTSA  146 (262)
Q Consensus       104 R~a~l~rfrekrk~r~f~KkirY~~Rqe~A~r~~R~kGqfas~  146 (262)
                      |.+.|.+|++||+.|+|+|+|+|++||.+|+.+||.+|+|++.
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~   43 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKK   43 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCC
Confidence            6789999999999999999999999999999999999999974

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.70  E-value=8.8e-09  Score=88.78  Aligned_cols=50  Identities=46%  Similarity=0.951  Sum_probs=44.2

Q ss_pred             CccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCC
Q 024832          170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQP  221 (262)
Q Consensus       170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~  221 (262)
                      ...|.+|+++  .||+||++|.|+++||||||+++++++..|++.+++....
T Consensus       199 ~~~c~~~~~~--~t~~~r~~~~g~~~~cnacgl~~k~~~~~r~~~~~~~~~~  248 (340)
T KOG1601|consen  199 LRQCSNCGTT--KTPLWRRGPEGPKSLCNACGLRYKKGGVRRPLPEKRPASS  248 (340)
T ss_pred             CcccCCCCCC--CCcceecCCCCCccccccchhhhhhcCccccccccCcccc
Confidence            5899999997  9999999999988999999999999997788877764443

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.50  E-value=5.5e-08  Score=96.69  Aligned_cols=54  Identities=35%  Similarity=0.703  Sum_probs=46.7

Q ss_pred             CCCccceeeccCCCCCCceecCCC-----CCCccchhhhhHHHhcCCCC-CCCcccCCCCCCC
Q 024832          168 PSETSCTHCGISSKSTPMMRRGPS-----GPRSLCNACGLFWANKGALR-DLGKKMEDQPLTP  224 (262)
Q Consensus       168 ~~~~~C~nCgtt~~~TP~WRrGp~-----G~~~LCNACGl~~~~~g~~R-p~s~~~~~~~~~~  224 (262)
                      ....+|.||.++  .||+|||+..     | -+||||||||++.|+++| |++++..-+....
T Consensus       156 ~~~~vc~Nc~t~--stPlwrR~~~~~s~~~-n~lcnaCgl~~klhg~~r~P~t~ks~~~ks~~  215 (498)
T COG5641         156 NQPHVCSNCKTT--STPLWRRASSESSLPG-NNLCNACGLYLKLHGSPRAPISLKSDSIKSRS  215 (498)
T ss_pred             cccchhcccccc--CCccccccccccccCC-ccccccccccccccCCcCCCcccccccccccc
Confidence            344599999998  9999999999     6 599999999999999999 9999886555544

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=95.61  E-value=0.0058  Score=40.81  Aligned_cols=24  Identities=54%  Similarity=0.888  Sum_probs=20.8

Q ss_pred             CCCCcceeeecceeeeecccCCCC
Q 024832           67 SNSSQLTLSFRGQVYVFDSVTPDK   90 (262)
Q Consensus        67 ~~sS~ltlsf~g~~~vf~~v~pek   90 (262)
                      ..+.+|||-|.|+|+||+.++|+|
T Consensus         3 ~~~~qLTIfY~G~V~Vfd~v~~~K   26 (36)
T PF06200_consen    3 PETAQLTIFYGGQVCVFDDVPPDK   26 (36)
T ss_pred             CCCCcEEEEECCEEEEeCCCCHHH
Confidence            467899999999999999887665

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=92.20  E-value=0.11  Score=52.35  Aligned_cols=49  Identities=31%  Similarity=0.369  Sum_probs=42.1

Q ss_pred             CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCccc
Q 024832          168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKM  217 (262)
Q Consensus       168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~  217 (262)
                      +....|.+|++. +.||.|||...-.-++||+||++.+..+..||+..+.
T Consensus       295 ps~~~~s~~~~~-~~tp~~~r~~~~~s~~~n~~~~~~~~~~~~~p~~pk~  343 (498)
T COG5641         295 PSDKKRSTLTTS-TATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKP  343 (498)
T ss_pred             hhhcCccccccc-ccCcccccccccccccccccccccCCcccccccCCCC
Confidence            346689999975 5899999998777799999999999999999998865

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=89.79  E-value=1.3  Score=44.76  Aligned_cols=39  Identities=23%  Similarity=0.604  Sum_probs=31.9

Q ss_pred             CccceeeccCCCCCCce--ecCCCCCCccchhhhhHHHhcCCC
Q 024832          170 ETSCTHCGISSKSTPMM--RRGPSGPRSLCNACGLFWANKGAL  210 (262)
Q Consensus       170 ~~~C~nCgtt~~~TP~W--RrGp~G~~~LCNACGl~~~~~g~~  210 (262)
                      .+.|.+|+++  ..-.|  |-+|.-...||-.|=+||++.|.+
T Consensus       386 g~~CEsC~tt--qs~qWYsWGppnmqcrLCasCWiyWKKygGL  426 (693)
T KOG3554|consen  386 GRACESCYTT--QSLQWYSWGPPNMQCRLCASCWIYWKKYGGL  426 (693)
T ss_pred             CCcccccccc--cccceeccCCCCccchhhHHHHHHHHHhcCc
Confidence            7799999998  65565  556777678999999999998853

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=83.39  E-value=0.74  Score=29.06  Aligned_cols=19  Identities=53%  Similarity=0.688  Sum_probs=9.9

Q ss_pred             cHHHHHHHHHhhhhhhccc
Q 024832          103 QRAASLDRFRQKRKERCFD  121 (262)
Q Consensus       103 ~R~a~l~rfrekrk~r~f~  121 (262)
                      .|.++|.||-||||.|.+.
T Consensus         3 aRK~SLqRFLeKRK~R~~~   21 (27)
T PF09425_consen    3 ARKASLQRFLEKRKDRLAA   21 (27)
T ss_dssp             ---HHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHHHHhhcc
Confidence            4789999999999999765

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
4gat_A	66	Solution Nmr Structure Of The Wild Type Dna Binding		9e-05
2vus_I	43	Crystal Structure Of Unliganded Nmra-Area Zinc Fing		9e-05
7gat_A	66	Solution Nmr Structure Of The L22v Mutant Dna Bindi		1e-04

>pdb|4GAT|A Chain A, Solution Nmr Structure Of The Wild Type Dna Binding Domain Of Area Complexed To A 13bp Dna Containing A Cgata Site, Regularized Mean Structure Length = 66

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 163 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 218
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

>pdb|2VUS|I Chain I, Crystal Structure Of Unliganded Nmra-Area Zinc Finger Complex Length = 43

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 213
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 2   TTCTNC--FTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 41

>pdb|7GAT|A Chain A, Solution Nmr Structure Of The L22v Mutant Dna Binding Domain Of Area Complexed To A 13 Bp Dna Containing A Tgata Site, 34 Structures Length = 66

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 5/56 (8%)
Query: 163 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 218
           G+ + P  T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K +
Sbjct: 4   GEQNGP--TTCTNC--FTQTTPVWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTD 54

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-11
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	2e-10
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	5e-09
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-08
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-07

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 57.6 bits (139), Expect = 2e-11
 Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 2/49 (4%)

Query: 163 GQDDSPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 211
           G   +     C++C      T   R   S     CNAC ++       R
Sbjct: 1   GSHMNKKSFQCSNCS--VTETIRWRNIRSKEGIQCNACFIYQRKYNKTR 47

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 53.9 bits (130), Expect = 2e-10
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK 215
                C +CG  + +TP+ RR  +G   LCNACGL+    G  R L +
Sbjct: 2   SEARECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNGQNRPLIR 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 3/41 (7%)

Query: 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALR 211
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R
Sbjct: 2   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVR 39

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 48.9 bits (116), Expect = 2e-08
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)

Query: 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 216
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L  K
Sbjct: 10  TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLK 52

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 46.6 bits (110), Expect = 1e-07
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKK 216
             + TSC +C   + +T + RR  +G   +CNACGL++      R L  K
Sbjct: 4   RRAGTSCANCQ--TTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMK 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.75
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.73
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.72
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.71
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.63
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.59
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.52
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	80.59

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.75  E-value=7.1e-19  Score=129.04  Aligned_cols=58  Identities=31%  Similarity=0.590  Sum_probs=50.5

Q ss_pred             CCCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCccc
Q 024832          167 SPSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ  227 (262)
Q Consensus       167 ~~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~  227 (262)
                      ......|.||+++  .||+||+||+|+ +|||||||||++++++||+++++..+.....+.
T Consensus         4 ~~~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNACGl~~~~~~~~RP~~~~~~~i~~R~Rk~   61 (63)
T 3dfx_A            4 RRAGTSCANCQTT--TTTLWRRNANGD-PVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM   61 (63)
T ss_dssp             CCTTCCCTTTCCS--CCSSCCCCTTSC-CCCHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             CCCCCcCCCcCCC--CCCccCCCCCCC-chhhHHHHHHHHcCCCCCcCcCCCccccccCCC
Confidence            4567899999998  999999999997 999999999999999999999988877766543

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.73  E-value=1.4e-18  Score=118.71  Aligned_cols=42  Identities=50%  Similarity=0.991  Sum_probs=39.9

Q ss_pred             ccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCc
Q 024832          171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  215 (262)
Q Consensus       171 ~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~  215 (262)
                      ..|++|+++  .||+||+||+|+ +|||||||||++|+++||+++
T Consensus         2 ~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~l   43 (43)
T 2vut_I            2 TTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSL   43 (43)
T ss_dssp             CCCSSSCCC--CCSCCEECTTSC-EECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCccCCC--CCCccccCCCCC-cccHHHHHHHHHhCCCCCCCC
Confidence            579999998  999999999997 999999999999999999975

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.72  E-value=2.1e-18  Score=119.35  Aligned_cols=44  Identities=41%  Similarity=0.866  Sum_probs=41.2

Q ss_pred             CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCc
Q 024832          169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  215 (262)
Q Consensus       169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~  215 (262)
                      ....|+||+++  .||+||+||+|+ +|||||||||++++++||+++
T Consensus         3 ~~~~C~~C~tt--~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~RP~~~   46 (46)
T 1gnf_A            3 EARECVNCGAT--ATPLWRRDRTGH-YLCNACGLYHKMNGQNRPLIR   46 (46)
T ss_dssp             CSCCCTTTCCC--CCSSCBCCTTCC-CBCSHHHHHHHHTCSCCCCCC
T ss_pred             CCCCCCCcCCC--CCCcCccCCCCC-ccchHHHHHHHHcCCCCCCCC
Confidence            46789999998  999999999996 999999999999999999975

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.71  E-value=4.3e-18  Score=125.93  Aligned_cols=53  Identities=42%  Similarity=0.765  Sum_probs=47.8

Q ss_pred             CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCC
Q 024832          169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTP  224 (262)
Q Consensus       169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~  224 (262)
                      ....|+||+++  .||+||+||+|. +|||||||||++|+++||+++++..|....
T Consensus         8 ~~~~C~~C~t~--~Tp~WR~gp~G~-~LCNaCGl~~~~~~~~RP~~~k~~~ik~R~   60 (66)
T 4gat_A            8 GPTTCTNCFTQ--TTPLWRRNPEGQ-PLCNACGLFLKLHGVVRPLSLKTDVIKKRN   60 (66)
T ss_dssp             SSCCCTTTCCC--CCSSCEEETTTE-EECHHHHHHHHHHCSCCCGGGCCSCCCCCC
T ss_pred             CCCCCCCCCCC--CCCcCCcCCCCC-CccHHHHHHHHHcCCCCchhhccccccccc
Confidence            46899999998  999999999996 999999999999999999999886665444

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.63  E-value=1.3e-17  Score=124.96  Aligned_cols=50  Identities=20%  Similarity=0.311  Sum_probs=41.7

Q ss_pred             CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCC
Q 024832          168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMED  219 (262)
Q Consensus       168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~  219 (262)
                      .....|+||+++  .||+||+||.+..+|||||||||++++++||+++++.-
T Consensus         6 ~~~~~C~nC~tt--~Tp~WRrg~~~~g~LCNACGl~~~~~~~~RP~~~~~~~   55 (71)
T 2kae_A            6 KKSFQCSNCSVT--ETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKY   55 (71)
T ss_dssp             --CCCCSSSCCS--CCSSCCCCSSSSCCCSSHHHHHHHHHHSCCCTHHHHHH
T ss_pred             CCCCcCCccCCC--CCCccccCCCCCCccchHHHHHHHHhCCCCCcccchhh
Confidence            456899999998  99999995443349999999999999999999988643

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.59  E-value=6.4e-16  Score=125.22  Aligned_cols=57  Identities=32%  Similarity=0.603  Sum_probs=49.8

Q ss_pred             CCCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCccc
Q 024832          168 PSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQ  227 (262)
Q Consensus       168 ~~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~  227 (262)
                      .....|+||+++  .||+||+||+| ++|||||||||++|+++||+++++..|.....+.
T Consensus        57 ~~~~~C~~C~t~--~tp~WRr~~~g-~~lCNaCgl~~~~~~~~rp~~~~~~~i~~r~r~~  113 (115)
T 4hc9_A           57 RAGTSCANCQTT--TTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKM  113 (115)
T ss_dssp             CTTCCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCGGGCCSSCCCCC---
T ss_pred             cccccCCCcCCC--CcceeEECCCC-CCcchHHHHHHHHhCCCCCccccccchhhccccc
Confidence            346899999998  99999999999 7999999999999999999999998887766543

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.52  E-value=8.4e-15  Score=118.65  Aligned_cols=67  Identities=33%  Similarity=0.622  Sum_probs=53.5

Q ss_pred             CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCcccCCCCCCCCCCcCCCC
Q 024832          169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQGEGEVNDSDCGTAAH  242 (262)
Q Consensus       169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~~~~~~~~s~~~t~~~  242 (262)
                      ..+.|+||+++  .||+||+||+| .+|||||||||++++++||+.+.+.......    .....+++|+|+..
T Consensus         4 ~~~~C~~Cg~~--~Tp~WRr~~~g-~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~----~~~~~C~~C~t~~t   70 (115)
T 4hc9_A            4 MGRECVNCGAT--STPLWRRDGTG-HYLCNACGLYHKMNGQNRPLIKPKRRLSAAR----RAGTSCANCQTTTT   70 (115)
T ss_dssp             --CCCTTTCCS--CCSSCEECTTS-CEECHHHHHHHHHHSSCCCCSSCCCCCCCCC----CTTCCCTTTCCSCC
T ss_pred             CCCCCCCCCCc--cCCcceECCCC-CCcCcchhhhhhhcccccccccccccccccc----cccccCCCcCCCCc
Confidence            46899999998  99999999999 6999999999999999999987664332221    23578999997753

>3ogl_Q JAZ1 incomplete degron peptide; leucine-rich repeats, ubiquitin ligase, SCF, protein binding; HET: 7JA; 3.18A {Arabidopsis thaliana} PDB: 3ogm_Q*

Probab=80.59  E-value=0.84  Score=26.39  Aligned_cols=16  Identities=63%  Similarity=0.887  Sum_probs=14.7

Q ss_pred             cHHHHHHHHHhhhhhh
Q 024832          103 QRAASLDRFRQKRKER  118 (262)
Q Consensus       103 ~R~a~l~rfrekrk~r  118 (262)
                      -|.++|.||-+|||.|
T Consensus         5 aRk~SLqRFleKRk~R   20 (21)
T 3ogl_Q            5 ARRASLHRFLEKRKDR   20 (26)
T ss_pred             hHHHHHHHHHHHhhcc
Confidence            5899999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	6e-12
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	2e-10
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-09

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 56.7 bits (137), Expect = 6e-12
 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 3/43 (6%)

Query: 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDL 213
           T+CT+C   +++TP+ RR P G + LCNACGLF    G +R L
Sbjct: 1   TTCTNCF--TQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPL 40

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (126), Expect = 2e-10
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 172 SCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKG 208
            C +CG  + +TP+ RR  +G   LCNACGL+    G
Sbjct: 4   ECVNCG--ATATPLWRRDRTG-HYLCNACGLYHKMNG 37

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.8 bits (121), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKME 218
           T C++C   + +T + RR P G   +CNACGL++      R L  + +
Sbjct: 5   TVCSNCQ--TSTTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKD 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.78
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.74
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.69

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.78  E-value=2.2e-20  Score=125.02  Aligned_cols=42  Identities=50%  Similarity=1.005  Sum_probs=39.6

Q ss_pred             ccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCc
Q 024832          171 TSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGK  215 (262)
Q Consensus       171 ~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~  215 (262)
                      ..|+||+++  .||+||+||+| ++|||||||||++|+++||++|
T Consensus         1 t~C~nC~tt--~Tp~WRr~~~G-~~lCNACGl~~k~~g~~RP~sl   42 (42)
T d2vuti1           1 TTCTNCFTQ--TTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSL   42 (42)
T ss_dssp             CCCSSSCCC--CCSCCEECTTS-CEECHHHHHHHHHHSSCCCCCC
T ss_pred             CcCCCCCCC--CCccceeCCCC-CCchhhhhHHHHHcCCCCCCCC
Confidence            369999998  99999999999 6999999999999999999986

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=6.7e-19  Score=128.47  Aligned_cols=57  Identities=30%  Similarity=0.617  Sum_probs=49.5

Q ss_pred             CCccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCCCCCCcccCCCCCCCcccC
Q 024832          169 SETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGALRDLGKKMEDQPLTPAEQG  228 (262)
Q Consensus       169 ~~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~Rp~s~~~~~~~~~~~~~~  228 (262)
                      ....|+||+++  .||+||+||.| .+|||||||||++++++||+.++++.+........
T Consensus         3 ~g~~C~nCgt~--~Tp~WRr~~~G-~~lCNACGl~~~~~~~~RP~~~~~~~i~~r~r~~~   59 (66)
T d3gata_           3 AGTVCSNCQTS--TTTLWRRSPMG-DPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVS   59 (66)
T ss_dssp             TTCCCTTTCCC--CCSSEEECTTS-CEEEHHHHHHHHHHCSCCCGGGCCSSCCCCSCCCC
T ss_pred             CCCCCCCCCCC--CCcccccCCCC-CcccchhHHHHHHhCCcCCccccccccccccCCCC
Confidence            45789999998  99999999999 69999999999999999999998877666555443

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.8e-18  Score=113.06  Aligned_cols=38  Identities=42%  Similarity=0.961  Sum_probs=35.1

Q ss_pred             CccceeeccCCCCCCceecCCCCCCccchhhhhHHHhcCCC
Q 024832          170 ETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANKGAL  210 (262)
Q Consensus       170 ~~~C~nCgtt~~~TP~WRrGp~G~~~LCNACGl~~~~~g~~  210 (262)
                      .+.|+||+++  .||+||+||+| ++|||||||||++||+.
T Consensus         2 ~r~C~~Cgtt--~Tp~WR~gp~G-~~LCNACGl~~r~~G~n   39 (39)
T d1y0ja1           2 ARECVNCGAT--ATPLWRRDRTG-HYLCNACGLYHKMNGQN   39 (39)
T ss_dssp             CCCCSSSCCC--CCSCCEECTTS-CEECSSHHHHHHHSCCC
T ss_pred             cCCCCCCCCC--CCcccccCCCC-CEeeHHhHHHHHHhCCC
Confidence            5789999998  99999999999 59999999999999863