Citrus Sinensis ID: 024841

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKRTSLRQSLA
ccccccccHHHHHHcccccEEcccccccccccccEEEEcccccccccHHHHHHHccccEEEEEEEEEEEEEcEEEEEcccccEEEccccEEEEcccEEEEcEEEEEEcccEEEcccccccccEEEcccccEEEEEcccccccccccEEEEEccEEEEEEccEEEcccccEEEcccccccccccEEEEEEcccccccccccccccccEEEEEccEEEccccEEEEEccccEEEEEcEEEEccccccEEEEEEEcccccccccc
ccccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccEEEEEccccEEEEEEccEEEEEcEEEEEEcccEEccccEEEEEEcccEEEEEEEEEEEEcEEEcccccccccEEEEEcccccEEEEcccccccccccEEEccccEEEEEEccEEEEEEEcEEEcccccccccccEEEEEEEccccccEEccccEEEEEEEEEEccccccEEEEEEcccccEEEccccEEEcccccHHHHHHHHHHcccccccc
mvslpyahvDSCLRALAGQAEgfgrfaigglhgpvyfvtnlsddgpgslregcrrrepLWIVFEVSGTIhlssylsvssyktidgrgqrikltgkglrlkeCEHVIICNlefeggrghdvdgiqikpnsrhiwidrcslrdyddgliditrqstditvsrcyftqhdktmligadpshvgdrcirvtihhclfdgtrqrhprlrfgkvhlynnytrnwGIYAVCASVESQIYSQCNIyeagqkkrtfEYYTEKRTSLRQSLA
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVsgtihlssylsvssyktidgrgqRIKLtgkglrlkeCEHVIICNLefeggrghdvdgiqikpnsrhiwiDRCSLRDYDDGLIDItrqstditvsrCYFTQHDKTMLIGADPSHVGDRCIRVTIHHclfdgtrqrhprlrfGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYeagqkkrtfeyytekrtslrqsla
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKRTSLRQSLA
****PYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYY************
**SLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKRTSLRQS*A
MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTE**********
*VSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKRTSL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYYTEKRTSLRQSLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q9C8G4368 Probable pectate lyase 4 no no 0.904 0.644 0.418 7e-47
Q9FM66392 Putative pectate lyase 21 no no 0.893 0.596 0.413 1e-41
O65388384 Putative pectate lyase 2 no no 0.938 0.640 0.392 4e-41
Q93Z04 501 Probable pectate lyase 13 no no 0.854 0.447 0.427 4e-40
P15721398 Probable pectate lyase P5 N/A no 0.919 0.605 0.418 5e-39
P40972397 Pectate lyase OS=Nicotian N/A no 0.919 0.607 0.407 1e-38
O65457394 Putative pectate lyase 17 no no 0.912 0.606 0.375 2e-37
O64510455 Probable pectate lyase 6 no no 0.954 0.549 0.363 9e-37
O65456394 Probable pectate lyase 16 no no 0.912 0.606 0.368 1e-36
P27762397 Pollen allergen Amb a 2 O N/A no 0.866 0.571 0.376 4e-36
>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1 Back     alignment and function desciption
 Score =  187 bits (475), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 108/258 (41%), Positives = 152/258 (58%), Gaps = 21/258 (8%)

Query: 9   VDSCLR----------ALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +D+C R          ALA  A G+G+ AIGG +GP+Y VTN SD+     PG+LR    
Sbjct: 38  IDACWRRNPKWATNRQALAHCAVGYGKAAIGGKNGPIYVVTNPSDNPTRPSPGTLRYAVS 97

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLT-GKGLRLKECEHVIICNLEFE 113
           + +PLWI F     I L S L ++SYKTIDGRG ++++  G  LR+++ +HVII  +   
Sbjct: 98  QPKPLWITFARDMVIVLKSQLMINSYKTIDGRGAKVEIANGPCLRIRQVKHVIIHGISIH 157

Query: 114 GGR----GHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKT 169
             +    G D DGI++   S H+WID C L    DGLID+   ST +T+S  YFTQHDK 
Sbjct: 158 DCKADPNGMDGDGIRVF-QSTHVWIDHCFLSRCHDGLIDVIVSSTAVTISNNYFTQHDKV 216

Query: 170 MLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVE 228
           ML+G D S++GD+ +RVTI    F  G  +R PR+R G  H+ NN    W +YA+  S  
Sbjct: 217 MLLGHDDSYMGDKDMRVTIAFNTFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSAN 276

Query: 229 SQIYSQCNIYEAGQKKRT 246
             I+S+ N + A +K+ +
Sbjct: 277 PIIFSEGNYFVAPEKRSS 294

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|Q9FM66|PLY21_ARATH Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=3 SV=1 Back     alignment and function description
>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2 Back     alignment and function description
>sp|Q93Z04|PLY13_ARATH Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1 Back     alignment and function description
>sp|P15721|PLY56_SOLLC Probable pectate lyase P56 OS=Solanum lycopersicum GN=LAT56 PE=2 SV=2 Back     alignment and function description
>sp|P40972|PLY_TOBAC Pectate lyase OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O65457|PLY17_ARATH Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1 Back     alignment and function description
>sp|O64510|PLY6_ARATH Probable pectate lyase 6 OS=Arabidopsis thaliana GN=At2g02720 PE=2 SV=1 Back     alignment and function description
>sp|O65456|PLY16_ARATH Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1 Back     alignment and function description
>sp|P27762|MPAA2_AMBAR Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
255571673312 Pectate lyase precursor, putative [Ricin 0.992 0.833 0.892 1e-137
388520933331 unknown [Lotus japonicus] 0.954 0.755 0.9 1e-134
224098198327 predicted protein [Populus trichocarpa] 0.965 0.773 0.893 1e-134
225439836 373 PREDICTED: probable pectate lyase 4-like 0.965 0.678 0.885 1e-132
147866065 422 hypothetical protein VITISV_005608 [Viti 0.965 0.599 0.885 1e-132
297741529329 unnamed protein product [Vitis vinifera] 0.965 0.768 0.885 1e-132
297816804331 pectate lyase family protein [Arabidopsi 1.0 0.791 0.851 1e-132
30694193331 pectate lyase [Arabidopsis thaliana] gi| 0.965 0.764 0.877 1e-131
118483499 386 unknown [Populus trichocarpa] 0.961 0.652 0.873 1e-130
118488640 389 unknown [Populus trichocarpa] 0.988 0.665 0.849 1e-130
>gi|255571673|ref|XP_002526780.1| Pectate lyase precursor, putative [Ricinus communis] gi|223533856|gb|EEF35586.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 232/260 (89%), Positives = 245/260 (94%)

Query: 1   MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
           M SLPYA VD  +RA+AG+AEGFGR AIGGLHGPVY VT L+DDGPGSLR+GCRRREPLW
Sbjct: 1   MASLPYADVDFTIRAMAGRAEGFGRLAIGGLHGPVYSVTTLADDGPGSLRDGCRRREPLW 60

Query: 61  IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
           IVFEVSGTIHL+SYLSVSSYKTIDGRGQRIK TGKGLRLKECEH+IICNLEFE GRGHDV
Sbjct: 61  IVFEVSGTIHLNSYLSVSSYKTIDGRGQRIKFTGKGLRLKECEHIIICNLEFESGRGHDV 120

Query: 121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
           DGIQIKPNS+HIWIDRCSLRDYDDGLIDITRQSTDITVSRC+FTQHDKTMLIGADPSHVG
Sbjct: 121 DGIQIKPNSKHIWIDRCSLRDYDDGLIDITRQSTDITVSRCFFTQHDKTMLIGADPSHVG 180

Query: 181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
           DRCIRVTIHHC FDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA
Sbjct: 181 DRCIRVTIHHCFFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240

Query: 241 GQKKRTFEYYTEKRTSLRQS 260
           G+KK+TFEYYTEK     ++
Sbjct: 241 GEKKKTFEYYTEKAADKEET 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388520933|gb|AFK48528.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224098198|ref|XP_002311134.1| predicted protein [Populus trichocarpa] gi|222850954|gb|EEE88501.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439836|ref|XP_002277576.1| PREDICTED: probable pectate lyase 4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147866065|emb|CAN80964.1| hypothetical protein VITISV_005608 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741529|emb|CBI32661.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297816804|ref|XP_002876285.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] gi|297322123|gb|EFH52544.1| pectate lyase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30694193|ref|NP_191074.2| pectate lyase [Arabidopsis thaliana] gi|190886519|gb|ACE95182.1| At3g55140 [Arabidopsis thaliana] gi|192571722|gb|ACF04806.1| At3g55140 [Arabidopsis thaliana] gi|332645823|gb|AEE79344.1| pectate lyase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|118483499|gb|ABK93648.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118488640|gb|ABK96132.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2100651331 AT3G55140 [Arabidopsis thalian 0.965 0.764 0.877 2.4e-124
TAIR|locus:2074999378 AT3G09540 [Arabidopsis thalian 0.950 0.658 0.763 1.9e-106
TAIR|locus:2204232368 AT1G30350 [Arabidopsis thalian 0.877 0.625 0.435 4.4e-45
TAIR|locus:2082667 501 PMR6 "powdery mildew resistant 0.854 0.447 0.431 1.4e-39
TAIR|locus:2179949 518 AT5G04310 [Arabidopsis thalian 0.480 0.243 0.441 9.7e-39
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.461 0.293 0.439 5.4e-37
TAIR|locus:2120643394 AT4G22090 [Arabidopsis thalian 0.503 0.335 0.410 6e-37
TAIR|locus:2058842455 AT2G02720 [Arabidopsis thalian 0.458 0.263 0.411 2.8e-35
TAIR|locus:2101998 483 AT3G53190 [Arabidopsis thalian 0.458 0.248 0.427 9.3e-35
TAIR|locus:2154384417 AT5G48900 [Arabidopsis thalian 0.477 0.299 0.433 1.3e-34
TAIR|locus:2100651 AT3G55140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1222 (435.2 bits), Expect = 2.4e-124, P = 2.4e-124
 Identities = 222/253 (87%), Positives = 238/253 (94%)

Query:     1 MVSLPYAHVDSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLW 60
             M SLPYA  D  LRALAG+AEGFGRFA+GGLHG +Y VT+L+DDGPG+LREG RR+EPLW
Sbjct:     1 MTSLPYADADCSLRALAGRAEGFGRFAVGGLHGDLYVVTSLADDGPGTLREGGRRKEPLW 60

Query:    61 IVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV 120
             IVF VSGTI+L+SYLSVSSYKTIDGRGQRIKLTGKG+RLKECEH+IICNLEFEGGRGHDV
Sbjct:    61 IVFAVSGTINLNSYLSVSSYKTIDGRGQRIKLTGKGIRLKECEHIIICNLEFEGGRGHDV 120

Query:   121 DGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVG 180
             DGIQIKP SRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYF QHDKTMLIGADPSHV 
Sbjct:   121 DGIQIKPKSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHVE 180

Query:   181 DRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA 240
             DRCIRVTIHHC FDGTRQR PRLRFGKVHLYNNYTRNWGIYAVCASVE+Q++SQCNIYEA
Sbjct:   181 DRCIRVTIHHCFFDGTRQRQPRLRFGKVHLYNNYTRNWGIYAVCASVEAQVFSQCNIYEA 240

Query:   241 GQKKRTFEYYTEK 253
             G KK+TFEYY+EK
Sbjct:   241 GVKKKTFEYYSEK 253
GO:0005886 "plasma membrane" evidence=ISM
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2074999 AT3G09540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082667 PMR6 "powdery mildew resistant 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179949 AT5G04310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120643 AT4G22090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058842 AT2G02720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101998 AT3G53190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154384 AT5G48900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00011207
hypothetical protein (558 aa)
  •  •  0.931
eugene3.00280097
RecName- Full=Pectinesterase; EC=3.1.1.11; (520 aa)
  •  •  0.931
gw1.XIII.724.1
pectinesterase family protein (EC-3.1.1.11) (512 aa)
  •  •  0.930
eugene3.00140126
hypothetical protein (514 aa)
  •  •  0.930
eugene3.00030462
hypothetical protein (580 aa)
  •  •  0.930
fgenesh4_pm.C_LG_II000883
hypothetical protein (450 aa)
  •  •  0.930
estExt_fgenesh4_pm.C_LG_VII0457
pectinesterase family protein (EC-3.1.1.11) (340 aa)
  •  •  0.930
gw1.X.3259.1
pectinesterase family protein (EC-3.1.1.11) (555 aa)
  •  •  0.929
estExt_fgenesh4_pg.C_LG_XI0229
RecName- Full=Pectinesterase; EC=3.1.1.11; (549 aa)
  •  •  0.928
estExt_fgenesh4_pg.C_1450045
pectinesterase family protein (EC-3.1.1.11) (381 aa)
  •  •  0.928

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
smart00656190 smart00656, Amb_all, Amb_all domain 9e-70
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 5e-47
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 7e-40
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  212 bits (543), Expect = 9e-70
 Identities = 75/179 (41%), Positives = 98/179 (54%), Gaps = 13/179 (7%)

Query: 75  LSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGR---GHDVDGIQIKPNSRH 131
           + ++S KTIDGRG ++++ G GL +K   +VII NL     +   G D D I I   S +
Sbjct: 12  IIINSNKTIDGRGSKVEIKGGGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISID-GSSN 70

Query: 132 IWIDRCSLRD---------YDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDR 182
           +WID  SL             DGLIDI   ST +T+S  YF  H K ML+G   S   D 
Sbjct: 71  VWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDG 130

Query: 183 CIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAG 241
            +RVTI H  F   RQR PR+RFG VH+YNNY   W  YA+   + + I S+ N +EA 
Sbjct: 131 KMRVTIAHNYFGNLRQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAP 189

Length = 190
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.34
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 99.12
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.64
PLN02218431 polygalacturonase ADPG 98.5
PLN02793443 Probable polygalacturonase 98.46
PLN03003 456 Probable polygalacturonase At3g15720 98.4
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.39
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.38
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.32
PLN02155394 polygalacturonase 98.31
PLN02218431 polygalacturonase ADPG 98.3
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.27
PLN03003 456 Probable polygalacturonase At3g15720 98.12
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 98.12
PLN03010409 polygalacturonase 98.11
PLN03010409 polygalacturonase 98.06
PLN02793443 Probable polygalacturonase 98.01
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 98.01
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.93
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.91
PLN02155394 polygalacturonase 97.89
PLN02197588 pectinesterase 97.87
PLN02188404 polygalacturonase/glycoside hydrolase family prote 97.79
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.79
PLN02480343 Probable pectinesterase 97.79
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.77
PLN02176340 putative pectinesterase 97.67
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.66
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.46
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.39
PLN02301548 pectinesterase/pectinesterase inhibitor 97.38
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.38
PLN02432293 putative pectinesterase 97.35
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.35
PLN02497331 probable pectinesterase 97.35
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.3
PLN02665366 pectinesterase family protein 97.25
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.21
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.2
smart00656190 Amb_all Amb_all domain. 97.17
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.17
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.14
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.09
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 97.05
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.05
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.03
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.02
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.02
PLN02682369 pectinesterase family protein 97.02
PLN02773317 pectinesterase 96.96
PLN02304379 probable pectinesterase 96.89
PLN02916502 pectinesterase family protein 96.89
PLN02484587 probable pectinesterase/pectinesterase inhibitor 96.84
PLN02634359 probable pectinesterase 96.82
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.82
PLN02314586 pectinesterase 96.8
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 96.74
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.61
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.54
PLN02671359 pectinesterase 96.31
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.27
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.14
PRK10531422 acyl-CoA thioesterase; Provisional 96.14
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 95.84
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 94.06
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 93.38
PF12541 277 DUF3737: Protein of unknown function (DUF3737) ; I 90.52
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 90.12
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 90.1
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 89.75
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 86.62
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-57  Score=406.80  Aligned_cols=232  Identities=35%  Similarity=0.558  Sum_probs=206.9

Q ss_pred             ccccccccCCcccccC-------CCCCCCCCCeEEEcCCCCCCChhHHHHhhcCCCeEEEEEeeeEEEec------ceEE
Q 024841           10 DSCLRALAGQAEGFGR-------FAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVSGTIHLS------SYLS   76 (262)
Q Consensus        10 ~~~~~~~~~~a~Gfg~-------~ttGG~gg~v~~VT~l~dsg~GsLr~al~~~~pr~Ivf~vsG~I~l~------~~i~   76 (262)
                      .+..|.|- ..+|||+       +||||.||++++|+|.+|     |..++++.+|.++|+.+.|+|+++      ..|+
T Consensus        25 ~ant~t~~-~~~GfA~~~~~~~~GTtGG~~g~~v~v~ta~~-----l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~ik   98 (345)
T COG3866          25 EANTQTLN-SFAGFASNPAGSKTGTTGGSGGDIVTVRTAND-----LETYLSASGKYTVIIVVKGTITASTPSDKKITIK   98 (345)
T ss_pred             ccCCcccc-cccccccccCCCCCCcccCCCCcEEEEeeHHH-----HHHHhhccCceEEEEEEcceEeccCCCCceEEEe
Confidence            55666663 6899986       489999999999999999     999999999997777799999987      4577


Q ss_pred             ecCCeEEEeeccceEEecCcEEEEeeccEEEeeeEEecCCCCCC--CcEEEcCCCceEEEEeeeeec--------CCCCe
Q 024841           77 VSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGHDV--DGIQIKPNSRHIWIDRCSLRD--------YDDGL  146 (262)
Q Consensus        77 i~sn~TI~G~g~~~~i~G~gi~i~~a~NVIIrnl~i~~~~~~~~--D~I~i~~~~~nVwIDHcs~s~--------~~Dg~  146 (262)
                      +.+||||.|.|..++|.|++|.|+.+.|||||||+|++-..++.  |+|+|..+++|||||||+|+.        ..||+
T Consensus        99 i~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl  178 (345)
T COG3866          99 IGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGL  178 (345)
T ss_pred             eccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCcc
Confidence            78999999999999999999999999999999999998765554  999996689999999999998        67999


Q ss_pred             eEeeeCCccEEEeccEEccCCceeeecCCCCC-CCCcceEEEEeceeecCCCCCCCccccCeEEEEcceEEcCcceeEEe
Q 024841          147 IDITRQSTDITVSRCYFTQHDKTMLIGADPSH-VGDRCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNWGIYAVCA  225 (262)
Q Consensus       147 id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~-~~d~~~~vT~hhN~f~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~~~  225 (262)
                      +|++.++++||||||+|++|+|++|+|++|+. .+|++++||+|||||.|+.+|+||+|+|.+|+|||||++...+++..
T Consensus       179 ~Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         179 VDIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EEeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccccccCCceEeeEEEEeccccccCcccceEE
Confidence            99999999999999999999999999999874 56788999999999999999999999999999999999776555555


Q ss_pred             ccC--ceEEEEceEEecCCcceeE
Q 024841          226 SVE--SQIYSQCNIYEAGQKKRTF  247 (262)
Q Consensus       226 ~~~--a~v~~e~N~F~~~~~~~~~  247 (262)
                      +++  |++++|+|||+....+.-+
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f  282 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGF  282 (345)
T ss_pred             eeccceEEEEecceeccCCCCcee
Confidence            555  9999999999997665444

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 4e-35
3zsc_A340 Catalytic Function And Substrate Recognition Of The 3e-25
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 4e-24
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 2e-18
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 1e-17
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 3e-17
3krg_A399 Structural Insights Into Substrate Specificity And 5e-17
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 7e-17
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 1e-16
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 1e-14
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 2e-14
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 7e-10
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 7e-10
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 1e-08
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 1e-05
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 2e-05
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/268 (36%), Positives = 131/268 (48%), Gaps = 37/268 (13%)
Query: 9   VDSCLRA----------LAGQAEGFGRFAIGGLHGPVYFVTNLSDDG----PGSLREGCR 54
           +DSC R           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G  
Sbjct: 4   IDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGAT 63
Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVII----- 107
           R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++  HVI+     
Sbjct: 64  REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHI 123
Query: 108 --CNLEFEGG------------RGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQS 153
             CN    G                D D I ++ N  + WID  SL D  DGLID+T  S
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSDGLIDVTLGS 182
Query: 154 TDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYN 212
           T IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR R+G VH+ N
Sbjct: 183 TGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVAN 242
Query: 213 NYTRNWGIYAVCASVESQIYSQCNIYEA 240
           N    W IYA+  S    I S+ N + A
Sbjct: 243 NNYDPWNIYAIGGSSNPTILSEGNSFTA 270
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 5e-83
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-80
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 5e-76
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 2e-64
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 2e-63
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 8e-63
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 4e-62
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 6e-57
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 1e-56
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 7e-56
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 6e-54
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-08
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 6e-08
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 6e-05
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 3e-04
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
 Score =  251 bits (642), Expect = 5e-83
 Identities = 76/271 (28%), Positives = 118/271 (43%), Gaps = 36/271 (13%)

Query: 15  ALAGQAEGF--------GRFAIGGLHGPVYFVTNLSDDGPGSLREGCRRREPLWIVFEVS 66
           +L  +  GF            +GGL G + FV    +     L +         IV + +
Sbjct: 1   SLNDKPVGFASVPTADLPEGTVGGLGGEIVFVRTAEE-----LEKYTTAEGKYVIVVDGT 55

Query: 67  GTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEG--------GRGH 118
                   + V S KTI G     K+ G GL +K+ ++VII N+ FEG        G+ +
Sbjct: 56  IVFEPKREIKVLSDKTIVGIND-AKIVGGGLVIKDAQNVIIRNIHFEGFYMEDDPRGKKY 114

Query: 119 DVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFTQHDKTMLIGADPSH 178
           D D I ++ NS HIWID  +  + +DG +DI + S  ITVS   F  HDK  L+G+    
Sbjct: 115 DFDYINVE-NSHHIWIDHITFVNGNDGAVDIKKYSNYITVSWNKFVDHDKVSLVGSSDKE 173

Query: 179 VGD---RCIRVTIHHCLFDGTRQRHPRLRFGKVHLYNNYTRNW----------GIYAVCA 225
             +   +  +VT HH  F    QR PR+RFG  H++NN+               IY V +
Sbjct: 174 DPEQAGQAYKVTYHHNYFKNLIQRMPRIRFGMAHVFNNFYSMGLRTGVSGNVFPIYGVAS 233

Query: 226 SVESQIYSQCNIYEAGQKKRTFEYYTEKRTS 256
           ++ ++++ + N +                T 
Sbjct: 234 AMGAKVHVEGNYFMGYGAVMAEAGIAFLPTR 264
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.95
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.86
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.81
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.75
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.74
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.61
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.55
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.54
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.54
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.53
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.53
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.53
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.52
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.51
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.48
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.4
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.39
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.36
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.36
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.29
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.28
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.24
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 98.14
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 98.09
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.05
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.02
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.02
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.99
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.97
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.95
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 97.94
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.82
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.8
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.79
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.71
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.7
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.56
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.52
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 97.44
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.35
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.32
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 97.29
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.06
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.97
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 96.86
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.81
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.8
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.6
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 96.44
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.36
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.26
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 96.03
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 95.93
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 95.77
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 95.73
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 95.57
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 87.73
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 83.54
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=3.3e-66  Score=481.29  Aligned_cols=233  Identities=40%  Similarity=0.630  Sum_probs=219.1

Q ss_pred             ccccccccCCcccccCCCCCCCCCCeEEEcCCCCC----CChhHHHHhhcCCCeEEEEEeeeEEEecceEEecCCeEEEe
Q 024841           10 DSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDG   85 (262)
Q Consensus        10 ~~~~~~~~~~a~Gfg~~ttGG~gg~v~~VT~l~ds----g~GsLr~al~~~~pr~Ivf~vsG~I~l~~~i~i~sn~TI~G   85 (262)
                      ..+.++++++|||||++||||+||++|+||+++|+    +|||||+||++++|++|||+++|+|+|+++|.|.++|||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l~~~l~V~sn~TI~G   94 (346)
T 1pxz_A           15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             hhhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEecCccEEecCCeEEEc
Confidence            34566777799999999999999999999999998    89999999999999999999999999999999999999999


Q ss_pred             eccceEEec--CcEEEEeeccEEEeeeEEecCC-------------------CCCCCcEEEcCCCceEEEEeeeeecCCC
Q 024841           86 RGQRIKLTG--KGLRLKECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDD  144 (262)
Q Consensus        86 ~g~~~~i~G--~gi~i~~a~NVIIrnl~i~~~~-------------------~~~~D~I~i~~~~~nVwIDHcs~s~~~D  144 (262)
                      +|..+.|.|  .+|.++.++|||||||+|+...                   .+++|||.+. ++++||||||+|+|+.|
T Consensus        95 ~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~-~s~nVwIDHcs~s~~~D  173 (346)
T 1pxz_A           95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEe-cCceEEEEeeEEecCCC
Confidence            999999997  5899999999999999999652                   2578999998 89999999999999999


Q ss_pred             CeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceee-cCCCCCCCccccCeEEEEcceEEcCcceeE
Q 024841          145 GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNNYTRNWGIYAV  223 (262)
Q Consensus       145 g~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f-~~~~~R~Pr~r~G~~hv~NN~~~n~~~~~~  223 (262)
                      |++|+++.+++||||||+|.+|+|++|+|++|+...|+.++||||||+| +++.+|+||+|+|++|++||||++|+.|++
T Consensus       174 g~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv~NN~~~~~~~~~i  253 (346)
T 1pxz_A          174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEEEeeEEEcccceEE
Confidence            9999988999999999999999999999999877777789999999999 999999999999999999999999999999


Q ss_pred             EeccCceEEEEceEEecCCc
Q 024841          224 CASVESQIYSQCNIYEAGQK  243 (262)
Q Consensus       224 ~~~~~a~v~~e~N~F~~~~~  243 (262)
                      ..+.++++++|+|||++++.
T Consensus       254 ~~~~~~~i~~egN~F~~~~~  273 (346)
T 1pxz_A          254 GGSSNPTILSEGNSFTAPSE  273 (346)
T ss_dssp             EEESCCEEEEESCEEECCSC
T ss_pred             eccCCceEEEECCEEECCCC
Confidence            99999999999999999874
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 5e-84
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 5e-61
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 4e-57
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 2e-55
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 1e-50
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 3e-48
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  253 bits (646), Expect = 5e-84
 Identities = 95/277 (34%), Positives = 131/277 (47%), Gaps = 35/277 (12%)

Query: 9   VDSCLR----------ALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCR 54
           +DSC R           LA  A GFG   +GG  G  Y VT+  D+     PG+LR G  
Sbjct: 4   IDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGAT 63

Query: 55  RREPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKG--LRLKECEHVIICNLEF 112
           R + LWI+F  +  I L   L V+ +KTIDGRG  + L   G  L +++  HVI+ +L  
Sbjct: 64  REKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHI 123

Query: 113 EGGRGHDVDGIQIKP------------------NSRHIWIDRCSLRDYDDGLIDITRQST 154
            G     +  + +                    N  + WID  SL D  DGLID+T  ST
Sbjct: 124 HGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLGST 183

Query: 155 DITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLF-DGTRQRHPRLRFGKVHLYNN 213
            IT+S  +F  H K ML+G D ++  D+ ++VT+    F     QR PR R+G VH+ NN
Sbjct: 184 GITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANN 243

Query: 214 YTRNWGIYAVCASVESQIYSQCNIYEAGQKKRTFEYY 250
               W IYA+  S    I S+ N + A  +    E  
Sbjct: 244 NYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVT 280
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.85
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.73
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 98.63
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.6
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.44
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.26
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.24
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 98.18
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 98.02
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.99
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.93
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.5
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.41
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.36
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.32
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.31
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.21
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.17
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.11
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 97.08
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 96.91
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.87
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.81
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.48
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.94
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.8
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 95.71
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.55
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 94.1
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=1.9e-67  Score=487.72  Aligned_cols=235  Identities=40%  Similarity=0.633  Sum_probs=216.9

Q ss_pred             ccccccccCCcccccCCCCCCCCCCeEEEcCCCCC----CChhHHHHhhcCCCeEEEEEeeeEEEecceEEecCCeEEEe
Q 024841           10 DSCLRALAGQAEGFGRFAIGGLHGPVYFVTNLSDD----GPGSLREGCRRREPLWIVFEVSGTIHLSSYLSVSSYKTIDG   85 (262)
Q Consensus        10 ~~~~~~~~~~a~Gfg~~ttGG~gg~v~~VT~l~ds----g~GsLr~al~~~~pr~Ivf~vsG~I~l~~~i~i~sn~TI~G   85 (262)
                      +.+.|+|++||||||++||||+||+||+||||+|+    +|||||+||++++||||||+++|+|+|+++|.|.|||||+|
T Consensus        15 ~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~~~L~v~sn~TI~G   94 (346)
T d1pxza_          15 DQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLKMPLYVAGHKTIDG   94 (346)
T ss_dssp             TTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCSSCEECCSSEEEEC
T ss_pred             HHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEeccceEEeCCCceEEc
Confidence            67889999999999999999999999999999998    99999999999999999999999999999999999999999


Q ss_pred             eccceEEecCc--EEEEeeccEEEeeeEEecCC-------------------CCCCCcEEEcCCCceEEEEeeeeecCCC
Q 024841           86 RGQRIKLTGKG--LRLKECEHVIICNLEFEGGR-------------------GHDVDGIQIKPNSRHIWIDRCSLRDYDD  144 (262)
Q Consensus        86 ~g~~~~i~G~g--i~i~~a~NVIIrnl~i~~~~-------------------~~~~D~I~i~~~~~nVwIDHcs~s~~~D  144 (262)
                      |+..+.|.+.+  |.+..++|||||||+|+.+.                   ..++|+|.++ ++++||||||+|+|..|
T Consensus        95 ~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~-~s~nvwIDH~s~s~~~D  173 (346)
T d1pxza_          95 RGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMR-NVTNAWIDHNSLSDCSD  173 (346)
T ss_dssp             TTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEE-SCEEEEEESCEEECCSS
T ss_pred             cCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeee-cCceEEEECcEeecccc
Confidence            98877888654  88888999999999999653                   1357999998 79999999999999999


Q ss_pred             CeeEeeeCCccEEEeccEEccCCceeeecCCCCCCCCcceEEEEeceeecCCC-CCCCccccCeEEEEcceEEcCcceeE
Q 024841          145 GLIDITRQSTDITVSRCYFTQHDKTMLIGADPSHVGDRCIRVTIHHCLFDGTR-QRHPRLRFGKVHLYNNYTRNWGIYAV  223 (262)
Q Consensus       145 g~id~~~~s~nvTIS~~~f~~h~~~~l~G~~d~~~~d~~~~vT~hhN~f~~~~-~R~Pr~r~G~~hv~NN~~~n~~~~~~  223 (262)
                      |++|+++++++||||||+|.+|.|++|+|+++....++.++||||||+|.++. +|.|+.|+|.+|++||||++|..|++
T Consensus       174 ~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~NN~~~n~~~~~~  253 (346)
T d1pxza_         174 GLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVANNNYDPWNIYAI  253 (346)
T ss_dssp             EEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEESCEECCCSSCSE
T ss_pred             CceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEECcEeecCccEEE
Confidence            99999999999999999999999999999988766677889999999997664 55678899999999999999999999


Q ss_pred             EeccCceEEEEceEEecCCcce
Q 024841          224 CASVESQIYSQCNIYEAGQKKR  245 (262)
Q Consensus       224 ~~~~~a~v~~e~N~F~~~~~~~  245 (262)
                      .+++++++++|+|||++++.+.
T Consensus       254 ~~~~~~~v~~e~N~F~~~~~~~  275 (346)
T d1pxza_         254 GGSSNPTILSEGNSFTAPSESY  275 (346)
T ss_dssp             EEESCCEEEEESCEEECCSCGG
T ss_pred             eccCceEEEEEeeEEECCCCcc
Confidence            9999999999999999988763
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure