Citrus Sinensis ID: 024844

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MALAASSSSSLAAKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHcccccccccccccccHHcccccccccccccEEEEccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHcHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEccHHHHHHHHHccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEcHHHccccccc
Coil and Loop (DISEMBL)
malaasssSSLAAKQLAGlitssscytkstASLVklgcisprtkrslkvsaavdansmpltgvvfqpFEEVKkevldvpvspllsLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQnlrggkvklhsimqppsefdhaekgDALYAMELALSLEKLTNEKLLSLHsvadrnndpqmaEFVESEFLGEQVEAINKIAKYVSQLRMvgkghglwhfDQMLLHEGDAA
Flexible Loop (DISEMBL)
malaasssssLAAKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA
Low Complexity Region (SEG)
MalaassssslaaKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEvldvpvspllslARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLakffkesseeerehaekfMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA
Disordered region (IsUnstruct)
****************AGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFF********************************************ALYAMELALSLEKLTNEKLLSLH************EFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLL******
Disordered Region (DISOPRED)
********************************************************SMPLTGVVFQPFEEVKKEVLDVP**PL**LARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFD***L******
Disordered Region (DISEMBL)
************AKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFK**********EKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA
Disordered Region (DISPRO)
*******************************************KRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALAASSSSSLAAKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q948P6	256	Ferritin-3, chloroplastic	yes	no	0.831	0.847	0.778	3e-97
Q96540	254	Ferritin-1, chloroplastic	N/A	no	0.793	0.814	0.772	3e-96
P25699	254	Ferritin, chloroplastic O	N/A	no	0.961	0.988	0.655	7e-95
O65100	256	Ferritin-3, chloroplastic	N/A	no	0.816	0.832	0.746	8e-95
Q39101	255	Ferritin-1, chloroplastic	yes	no	0.781	0.8	0.769	1e-94
Q41709	250	Ferritin-2, chloroplastic	N/A	no	0.777	0.812	0.802	1e-93
Q94FY2	250	Ferritin, chloroplastic O	N/A	no	0.938	0.98	0.652	1e-93
P19976	250	Ferritin-1, chloroplastic	no	no	0.938	0.98	0.652	1e-93
Q948P5	247	Ferritin-4, chloroplastic	no	no	0.846	0.894	0.751	5e-93
Q8H1T3	259	Ferritin-2, chloroplastic	N/A	no	0.808	0.814	0.753	1e-92

>sp|Q948P6|FRI3_SOYBN Ferritin-3, chloroplastic OS=Glycine max PE=2 SV=1

 Score =  354 bits (909), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 189/217 (87%)

Query: 45  RSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQIN 104
           ++L   A  D N+ PLTGVVF+PFEEVKKE+  VP  P  SLARQKY D+CEA INEQIN
Sbjct: 39  KNLVPCATKDTNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQIN 98

Query: 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164
           VEYNVSYVYHA++AYFDRDN+AL+GLAKFFKESSEEEREHAEK MEYQN RGGKVKL SI
Sbjct: 99  VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 158

Query: 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQ 224
           + P SEFDH EKGDALYAMELALSLEKLTNEKLL+LHSVA +NND Q+A+F+ESEFLGEQ
Sbjct: 159 VMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQ 218

Query: 225 VEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 261
           VEAI KI++YV+QLR VGKGHG+WHFDQMLLHE   A
Sbjct: 219 VEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVA 255

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 1EC: 6EC: .EC: 3EC: .EC: 1

>sp|Q96540|FRI1_BRANA Ferritin-1, chloroplastic OS=Brassica napus GN=LSC30 PE=2 SV=1

 Score =  351 bits (900), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 186/207 (89%)

Query: 50  SAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNV 109
           S+ VD N+MP+TGVVFQPFEEVKK  L +P++   SLARQ+Y D  EAAINEQINVEYNV
Sbjct: 48  SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSSEAAINEQINVEYNV 107

Query: 110 SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169
           SYVYH++YAYFDRDN+AL+GLAKFFKESS+EEREHAEKFMEYQN RGG+V LH I+ P S
Sbjct: 108 SYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNQRGGRVTLHPIVSPIS 167

Query: 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAIN 229
           +F+HAEKGDALYAMELALSLEKLTNEKLL+LH VA  NNDPQ+A+FVESEFLGEQ+EAI 
Sbjct: 168 DFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIK 227

Query: 230 KIAKYVSQLRMVGKGHGLWHFDQMLLH 256
           KI+ +++QLRMVGKGHG+WHFDQMLL+
Sbjct: 228 KISDFITQLRMVGKGHGVWHFDQMLLN 254

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P25699|FRI_PHAVU Ferritin, chloroplastic OS=Phaseolus vulgaris GN=PFE PE=2 SV=1

 Score =  347 bits (889), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 173/264 (65%), Positives = 206/264 (78%), Gaps = 13/264 (4%)

Query: 1   MALAASSSSSLAAKQLA---GLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANS 57
           MALA S  S  +   L+   G + + +C    +    K+G       R+L VSA+    +
Sbjct: 1   MALAPSKVSPFSGFSLSDGVGAVRNPTCSVSLSFLNKKVGS------RNLGVSAS----T 50

Query: 58  MPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALY 117
           +PLTGV+F+PFEEVKKE L VP +  +SLARQ Y DECE+AINEQINVEYN SYVYH+L+
Sbjct: 51  VPLTGVIFEPFEEVKKEELAVPTAGQVSLARQYYADECESAINEQINVEYNASYVYHSLF 110

Query: 118 AYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKG 177
           AYFDRDN+AL+G A+FFKESSEEEREHAEK M+YQN RGG+V LH I   PSEF+H EKG
Sbjct: 111 AYFDRDNVALKGFARFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNVPSEFEHVEKG 170

Query: 178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ 237
           DALYAMELALSLEKL NEKL S+HSVADRN DPQ+A+F+ESEFL EQVEAI KI++YV+Q
Sbjct: 171 DALYAMELALSLEKLVNEKLRSVHSVADRNKDPQLADFIESEFLSEQVEAIKKISEYVAQ 230

Query: 238 LRMVGKGHGLWHFDQMLLHEGDAA 261
           LRMVGKGHG+WHFDQ LLH+G AA
Sbjct: 231 LRMVGKGHGVWHFDQSLLHDGHAA 254

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Phaseolus vulgaris (taxid: 3885)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|O65100|FRI3_VIGUN Ferritin-3, chloroplastic OS=Vigna unguiculata PE=2 SV=1

 Score =  346 bits (888), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 159/213 (74%), Positives = 189/213 (88%)

Query: 45  RSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQIN 104
           R+++V AA      PLTGV+F+PF+E+KK+ L VP++P +SL+RQ Y DE EAAINEQIN
Sbjct: 44  RNMRVCAAASNAPAPLTGVIFEPFQELKKDYLAVPIAPNVSLSRQNYSDEAEAAINEQIN 103

Query: 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164
           VEYNVSYVYH+L+AYFDRDNIAL+GLAKFFKESSEEEREHAEK ++YQN+RGG+V LH I
Sbjct: 104 VEYNVSYVYHSLFAYFDRDNIALKGLAKFFKESSEEEREHAEKLIKYQNIRGGRVVLHPI 163

Query: 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQ 224
             PPSEF+H EKGDALYAMELALSLEKLTNEKLL +HSVADRNND Q+A+F+ESEFL EQ
Sbjct: 164 TSPPSEFEHPEKGDALYAMELALSLEKLTNEKLLYVHSVADRNNDAQLADFIESEFLNEQ 223

Query: 225 VEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 257
           VE+I KIA+YV+QLR+VGKGHG+WHFDQ LLH+
Sbjct: 224 VESIKKIAEYVTQLRLVGKGHGVWHFDQRLLHD 256

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Vigna unguiculata (taxid: 3917)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q39101|FRI1_ARATH Ferritin-1, chloroplastic OS=Arabidopsis thaliana GN=FER1 PE=1 SV=1

 Score =  346 bits (887), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 157/204 (76%), Positives = 183/204 (89%)

Query: 53  VDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYV 112
           VD N+MP+TGVVFQPFEEVKK  L +P++   SLARQ++ D  EA INEQINVEYNVSYV
Sbjct: 52  VDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQINVEYNVSYV 111

Query: 113 YHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD 172
           YH++YAYFDRDN+A++GLAKFFKESSEEER HAEKFMEYQN RGG+VKLH I+ P SEF+
Sbjct: 112 YHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHPIVSPISEFE 171

Query: 173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIA 232
           HAEKGDALYAMELALSLEKLTNEKLL++H VA  NNDPQ+A+FVESEFLGEQ+EAI KI+
Sbjct: 172 HAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGEQIEAIKKIS 231

Query: 233 KYVSQLRMVGKGHGLWHFDQMLLH 256
            Y++QLRM+GKGHG+WHFDQMLL+
Sbjct: 232 DYITQLRMIGKGHGVWHFDQMLLN 255

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q41709|FRI2_VIGUN Ferritin-2, chloroplastic OS=Vigna unguiculata GN=PFE2 PE=2 SV=2

 Score =  343 bits (879), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 163/203 (80%), Positives = 181/203 (89%)

Query: 56  NSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHA 115
           N   LTGV+F+PFEEVKKE+  VP  P  SLARQKY DE EAA+NEQINVEYNVSYVYHA
Sbjct: 44  NHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESEAAVNEQINVEYNVSYVYHA 103

Query: 116 LYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAE 175
           L+AYFDRDN+ALRGLAKFFKESSEEEREHAEK MEYQN RGGKVKL SI+ P SEFDHA+
Sbjct: 104 LFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNRRGGKVKLQSIVMPLSEFDHAD 163

Query: 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235
           KGDAL+AMELALSLEKLTNEKLL LHSVA +N D Q+A+FVESEFLGEQVE+I +I++YV
Sbjct: 164 KGDALHAMELALSLEKLTNEKLLHLHSVATKNGDVQLADFVESEFLGEQVESIKRISEYV 223

Query: 236 SQLRMVGKGHGLWHFDQMLLHEG 258
           +QLR VGKGHG+WHFDQMLLHEG
Sbjct: 224 AQLRRVGKGHGVWHFDQMLLHEG 246

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Vigna unguiculata (taxid: 3917)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q94FY2|FRI_MALXI Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/259 (65%), Positives = 202/259 (77%), Gaps = 14/259 (5%)

Query: 1   MALAASSSSSLAA----KQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDAN 56
           MALA S  S+ +       + G   + +C    +    KLG       R+L+V A+    
Sbjct: 1   MALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGS------RNLRVCAS---- 50

Query: 57  SMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHAL 116
           ++PLTGV+F+PFEEVKK  L VP +P +SLARQ Y DECE+AINEQINVEYN SYVYH+L
Sbjct: 51  TVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSL 110

Query: 117 YAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEK 176
           +AYFDRDN+AL+G AKFFKESSEEEREHAEK M+YQN RGG+V LH+I   PSEF+H EK
Sbjct: 111 FAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHAIKNVPSEFEHVEK 170

Query: 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236
           GDALYAMELALSLEKL NEKLL++HSVADRNNDPQMA+F+ESEFL EQVE+I KI++YV+
Sbjct: 171 GDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVA 230

Query: 237 QLRMVGKGHGLWHFDQMLL 255
           QLR VGKGHG+WHFDQ LL
Sbjct: 231 QLRRVGKGHGVWHFDQRLL 249

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Malus xiaojinensis (taxid: 141206)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|P19976|FRI1_SOYBN Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 169/259 (65%), Positives = 201/259 (77%), Gaps = 14/259 (5%)

Query: 1   MALAASSSSSLAA----KQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDAN 56
           MALA S  S+ +       + G   + +C    +    KLG       R+L+V A+    
Sbjct: 1   MALAPSKVSTFSGFSPKPSVGGAQKNPTCSVSLSFLNEKLGS------RNLRVCAS---- 50

Query: 57  SMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHAL 116
           ++PLTGV+F+PFEEVKK  L VP +P +SLARQ Y DECE+AINEQINVEYN SYVYH+L
Sbjct: 51  TVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSL 110

Query: 117 YAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEK 176
           +AYFDRDN+AL+G AKFFKESSEEEREHAEK M+YQN RGG+V LH I   PSEF+H EK
Sbjct: 111 FAYFDRDNVALKGFAKFFKESSEEEREHAEKLMKYQNTRGGRVVLHPIKNAPSEFEHVEK 170

Query: 177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS 236
           GDALYAMELALSLEKL NEKLL++HSVADRNNDPQMA+F+ESEFL EQVE+I KI++YV+
Sbjct: 171 GDALYAMELALSLEKLVNEKLLNVHSVADRNNDPQMADFIESEFLSEQVESIKKISEYVA 230

Query: 237 QLRMVGKGHGLWHFDQMLL 255
           QLR VGKGHG+WHFDQ LL
Sbjct: 231 QLRRVGKGHGVWHFDQRLL 249

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q948P5|FRI4_SOYBN Ferritin-4, chloroplastic OS=Glycine max PE=1 SV=2

 Score =  340 bits (873), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 169/225 (75%), Positives = 194/225 (86%), Gaps = 4/225 (1%)

Query: 41  PRT--KRSLKVSAAVDA-NSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEA 97
           PR+   R L V AA  + N   LTGV+F+PFEEVKKE+  VP  P  SLARQKY DE E+
Sbjct: 23  PRSVPARGLVVRAAKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESES 82

Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157
           A+NEQINVEYNVSYVYHA++AYFDRDN+ALRGLAKFFKESSEEEREHAEK MEYQN RGG
Sbjct: 83  AVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGG 142

Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           KVKL SI+ P S+FDHA+KGDAL+AMELALSLEKLTNEKLL+LHSVA +N D Q+A+FVE
Sbjct: 143 KVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVE 202

Query: 218 SEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE-GDAA 261
           +E+LGEQVEAI +I++YV+QLR VGKGHG+WHFDQMLLHE GDAA
Sbjct: 203 TEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLHEGGDAA 247

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

>sp|Q8H1T3|FRI2_TOBAC Ferritin-2, chloroplastic OS=Nicotiana tabacum GN=FER2 PE=2 SV=1

 Score =  339 bits (869), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 159/211 (75%), Positives = 185/211 (87%)

Query: 47  LKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVE 106
           L V A+  +N+ PLTGVVF+PFEEVKKE++ VP  P +SLAR KY D+CEAA+NEQINVE
Sbjct: 44  LVVCASKGSNTKPLTGVVFEPFEEVKKELMLVPTVPQVSLARHKYSDQCEAAVNEQINVE 103

Query: 107 YNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ 166
           YNVSYVYH +YAYFDRDN+AL+GLA+FFKESSEEER HAEK MEYQN RGGKVKL SI+ 
Sbjct: 104 YNVSYVYHGMYAYFDRDNVALKGLARFFKESSEEERGHAEKLMEYQNKRGGKVKLQSILM 163

Query: 167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVE 226
           P SEFDHAE+GDALYAMELALSL KLTN+KLL+LH+VA RNND Q+A+FVES++L EQVE
Sbjct: 164 PLSEFDHAEEGDALYAMELALSLAKLTNQKLLNLHAVATRNNDVQLADFVESKYLREQVE 223

Query: 227 AINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 257
           AI  I++YV+QLR VGKGHG+WHFDQMLL E
Sbjct: 224 AIKMISEYVAQLRRVGKGHGVWHFDQMLLQE 254

Stores iron in a soluble, non-toxic, readily available form. Important for iron homeostasis. Has ferroxidase activity. Iron is taken up in the ferrous form and deposited as ferric hydroxides after oxidation.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 6

EC: .

EC: 3

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
255571441	253	ferritin, plant, putative [Ricinus commu	0.931	0.960	0.691	4e-99
89276793	265	iron-binding protein [Pyrus pyrifolia]	0.858	0.845	0.755	9e-98
89276797	262	iron-binding protein [Pyrus pyrifolia]	0.992	0.988	0.680	3e-97
224091042	261	predicted protein [Populus trichocarpa]	0.946	0.946	0.706	3e-96
351723695	256	ferritin-3, chloroplastic [Glycine max]	0.831	0.847	0.778	2e-95
396075510	254	ferritin 1 [Brassica rapa subsp. pekinen	0.793	0.814	0.777	2e-95
4469288	250	ferritin [Medicago sativa]	0.957	1.0	0.667	1e-94
222160692	254	ferritin [Brassica juncea]	0.793	0.814	0.777	1e-94
312282781	253	unnamed protein product [Thellungiella h	0.942	0.972	0.664	2e-94
29839389	254	RecName: Full=Ferritin-1, chloroplastic;	0.793	0.814	0.772	2e-94

>gi|255571441|ref|XP_002526668.1| ferritin, plant, putative [Ricinus communis] gi|223533968|gb|EEF35690.1| ferritin, plant, putative [Ricinus communis]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 175/253 (69%), Positives = 207/253 (81%), Gaps = 10/253 (3%)

Query: 19  LITSSSCYTKSTASLVKLGCISP---------RTKRSLK-VSAAVDANSMPLTGVVFQPF 68
           +++S       T  L   G +SP         R +R+   V +A   + + LTGV+FQPF
Sbjct: 1   MLSSGVSAFSVTTRLRSDGVVSPTGNLCSLLQRKRRNTGIVISATAGDGLQLTGVIFQPF 60

Query: 69  EEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALR 128
           EEVKKE   VP++P +SLARQ +EDECEAA+NEQINVEYN SYVYHAL+AYFDRDN+AL+
Sbjct: 61  EEVKKEAFMVPITPQVSLARQLFEDECEAALNEQINVEYNASYVYHALFAYFDRDNVALK 120

Query: 129 GLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALS 188
           GLAKFFKESSEEEREHAEK M+YQN+RGG+VKLH I+ PPSEF+H EKGDALYAMELALS
Sbjct: 121 GLAKFFKESSEEEREHAEKLMQYQNIRGGRVKLHCIVAPPSEFEHVEKGDALYAMELALS 180

Query: 189 LEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLW 248
           LEKLTNEKLL+LHSVAD+NNDPQ+A+F+ESEFL EQVE I KI++YV+QLR VGKGHG+W
Sbjct: 181 LEKLTNEKLLNLHSVADKNNDPQLADFIESEFLVEQVEDIKKISEYVAQLRRVGKGHGVW 240

Query: 249 HFDQMLLHEGDAA 261
           HFDQMLLHEGDAA
Sbjct: 241 HFDQMLLHEGDAA 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89276793|gb|ABD66595.1| iron-binding protein [Pyrus pyrifolia]

 Score =  362 bits (929), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 170/225 (75%), Positives = 195/225 (86%), Gaps = 1/225 (0%)

Query: 38  CISPRTKRSL-KVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECE 96
            +S + +R L K + +  + ++ LTGVVFQPFEEVK +   VPVSP +SLARQ+Y DE E
Sbjct: 40  ALSFKPQRKLEKFAVSASSEAVALTGVVFQPFEEVKNDAFVVPVSPQVSLARQRYTDESE 99

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
           AA NEQINVEYNVSYVYHAL+AYFDRDN+AL+GLAKFFKESSEEEREHAEK MEYQN RG
Sbjct: 100 AATNEQINVEYNVSYVYHALFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRG 159

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G+VKLHS++  P+EFDHAEKGDALYAMELALSLEKLTNEKLL+LH VAD+NNDPQ+ +F+
Sbjct: 160 GRVKLHSVIAAPTEFDHAEKGDALYAMELALSLEKLTNEKLLNLHKVADQNNDPQLMDFI 219

Query: 217 ESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 261
           ESEFL EQVEAI KIA YV+QLR VGKGHG+WHFDQ LLHEGDAA
Sbjct: 220 ESEFLAEQVEAIKKIADYVTQLRRVGKGHGVWHFDQYLLHEGDAA 264

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|89276797|gb|ABD66597.1| iron-binding protein [Pyrus pyrifolia]

 Score =  360 bits (925), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 179/263 (68%), Positives = 209/263 (79%), Gaps = 4/263 (1%)

Query: 1   MALAASSSSSLAAKQL-AGLITSSSCYTKSTASLVKLGCISPRTK-RSLKVSAAVDANSM 58
           M+L + S+ S+ ++Q   G   S+  ++    S        P+ K     VSA+ DA +M
Sbjct: 1   MSLRSVSAFSVPSEQRDNGGAVSTRLFSSKLGSPSSALSFKPQRKLEKFSVSASSDAVAM 60

Query: 59  PLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYA 118
             TGVVFQPFEEVK +   VPV+P +SLARQ+Y +E EAAINEQINVEYNVSYVYHAL+A
Sbjct: 61  --TGVVFQPFEEVKNDAFVVPVAPHVSLARQRYANEPEAAINEQINVEYNVSYVYHALFA 118

Query: 119 YFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGD 178
           YFDRDN+AL+GLAKFFKESSEEER HAEK MEYQN+RGG+V LHSI+ PP+EFDH EKGD
Sbjct: 119 YFDRDNVALKGLAKFFKESSEEERGHAEKLMEYQNMRGGRVTLHSIVAPPTEFDHVEKGD 178

Query: 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238
           ALYAMELALSLEKLTNEKLL+LH VAD NND Q+ +F+ESEFL EQVEAI KIA YV+QL
Sbjct: 179 ALYAMELALSLEKLTNEKLLNLHKVADENNDAQLTDFIESEFLAEQVEAIKKIADYVTQL 238

Query: 239 RMVGKGHGLWHFDQMLLHEGDAA 261
           RMVGKGHG+WHFDQ LLHEGDAA
Sbjct: 239 RMVGKGHGVWHFDQQLLHEGDAA 261

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224091042|ref|XP_002309156.1| predicted protein [Populus trichocarpa] gi|118488573|gb|ABK96099.1| unknown [Populus trichocarpa] gi|222855132|gb|EEE92679.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (916), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 176/249 (70%), Positives = 197/249 (79%), Gaps = 2/249 (0%)

Query: 10  SLAAKQ--LAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQP 67
           SLAAKQ   A ++ +S        S   +      +++    S  V A    LTGVVFQP
Sbjct: 13  SLAAKQGDTARVLITSPTSDGHGISCSSVSAFPSASRKKRNTSLVVSATGETLTGVVFQP 72

Query: 68  FEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIAL 127
           FEEVKKEV  VP SP +S ARQ + DECEAAINEQINVEY  SYVYHA++AYFDRDNIAL
Sbjct: 73  FEEVKKEVFVVPNSPQVSFARQYFVDECEAAINEQINVEYTASYVYHAMFAYFDRDNIAL 132

Query: 128 RGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELAL 187
           +GLAKFFKESSEEEREHAEK MEYQN+RGGKV LHSI+  PSEF+H EKGDALYAMELAL
Sbjct: 133 KGLAKFFKESSEEEREHAEKLMEYQNIRGGKVVLHSILTSPSEFEHVEKGDALYAMELAL 192

Query: 188 SLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGL 247
           SLEKLTNEKLLSLH VAD NNDPQMA+FVE EFL EQVE+I KIA+YV+QLRMVGKGHG+
Sbjct: 193 SLEKLTNEKLLSLHKVADENNDPQMADFVEGEFLTEQVESIKKIAEYVAQLRMVGKGHGV 252

Query: 248 WHFDQMLLH 256
           WHFDQMLL+
Sbjct: 253 WHFDQMLLN 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723695|ref|NP_001237032.1| ferritin-3, chloroplastic [Glycine max] gi|29839387|sp|Q948P6.1|FRI3_SOYBN RecName: Full=Ferritin-3, chloroplastic; AltName: Full=SFerH-3; Flags: Precursor gi|15487307|dbj|BAB64536.1| ferritin [Glycine max]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 169/217 (77%), Positives = 189/217 (87%)

Query: 45  RSLKVSAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQIN 104
           ++L   A  D N+ PLTGVVF+PFEEVKKE+  VP  P  SLARQKY D+CEA INEQIN
Sbjct: 39  KNLVPCATKDTNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKYTDDCEATINEQIN 98

Query: 105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI 164
           VEYNVSYVYHA++AYFDRDN+AL+GLAKFFKESSEEEREHAEK MEYQN RGGKVKL SI
Sbjct: 99  VEYNVSYVYHAMFAYFDRDNVALKGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSI 158

Query: 165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQ 224
           + P SEFDH EKGDALYAMELALSLEKLTNEKLL+LHSVA +NND Q+A+F+ESEFLGEQ
Sbjct: 159 VMPLSEFDHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDVQLADFIESEFLGEQ 218

Query: 225 VEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 261
           VEAI KI++YV+QLR VGKGHG+WHFDQMLLHE   A
Sbjct: 219 VEAIKKISEYVAQLRRVGKGHGVWHFDQMLLHEEGVA 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|396075510|gb|AFN81242.1| ferritin 1 [Brassica rapa subsp. pekinensis]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 161/207 (77%), Positives = 187/207 (90%)

Query: 50  SAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNV 109
           S+ VD N+MP+TGVVFQPFEEVKK  L +P++   SLARQ+Y D CEAAINEQINVEYNV
Sbjct: 48  SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSCEAAINEQINVEYNV 107

Query: 110 SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169
           SYVYH++YAYFDRDN+AL+GLAKFFKESS+EEREHAEKFMEYQN RGG+V LH I+ P S
Sbjct: 108 SYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNKRGGRVTLHPIVSPIS 167

Query: 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAIN 229
           +F+HAEKGDALYAMELALSLEKLTNEKLL+LH VA  NNDPQ+A+FVESEFLGEQ+EAI 
Sbjct: 168 DFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIK 227

Query: 230 KIAKYVSQLRMVGKGHGLWHFDQMLLH 256
           KI+ +++QLRMVGKGHG+WHFDQMLL+
Sbjct: 228 KISDFITQLRMVGKGHGVWHFDQMLLN 254

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469288|emb|CAA65771.1| ferritin [Medicago sativa]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 210/256 (82%), Gaps = 6/256 (2%)

Query: 1   MALAASSSSSLAAKQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPL 60
           MAL+AS  S  +   + G  + ++ +  S+ +L   G      ++++KV AA       L
Sbjct: 1   MALSASKVSIFSPSPIVGHFSKNTTF--SSLNLPMDG----DKRKNVKVHAAAANAPTAL 54

Query: 61  TGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYF 120
           TGV+F+PFEEVKK+VL VP++  +SLARQ Y+DE E+AINEQINVEYNVSYVYH+L+AYF
Sbjct: 55  TGVIFEPFEEVKKDVLAVPIAHNVSLARQNYQDEVESAINEQINVEYNVSYVYHSLFAYF 114

Query: 121 DRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDAL 180
           DRDN+AL+GLAKFFKESSEEEREHAEK M+YQN+RGG+V LH I+ PPSEFDHAEKGDAL
Sbjct: 115 DRDNVALKGLAKFFKESSEEEREHAEKLMKYQNIRGGRVVLHPIVSPPSEFDHAEKGDAL 174

Query: 181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM 240
           YAMELALSLEKL NEKLL++HSVADRNNDPQ+A F+ESEFL EQVE+I KI++YV+QLR+
Sbjct: 175 YAMELALSLEKLVNEKLLNVHSVADRNNDPQLANFIESEFLVEQVESIKKISEYVTQLRL 234

Query: 241 VGKGHGLWHFDQMLLH 256
           VGKGHG+WHFDQ LLH
Sbjct: 235 VGKGHGVWHFDQTLLH 250

Source: Medicago sativa

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222160692|gb|ACM47495.1| ferritin [Brassica juncea]

 Score =  351 bits (901), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 161/207 (77%), Positives = 186/207 (89%)

Query: 50  SAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNV 109
           S+ VD N+MP+TGVVFQPFEEVKK  L +P++   SLARQ+Y D  EAAINEQINVEYNV
Sbjct: 48  SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRYADSSEAAINEQINVEYNV 107

Query: 110 SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169
           SYVYH++YAYFDRDN+AL+GLAKFFKESS+EEREHAEKFMEYQN RGG+VKLH I+ P S
Sbjct: 108 SYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNKRGGRVKLHPIVSPVS 167

Query: 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAIN 229
           +F+HAEKGDALYAMELALSLEKLTNEKLL+LH VA  NNDPQ+A+F ESEFLGEQ+EAI 
Sbjct: 168 DFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFDESEFLGEQIEAIK 227

Query: 230 KIAKYVSQLRMVGKGHGLWHFDQMLLH 256
           KI+ Y++QLRMVGKGHG+WHFDQMLL+
Sbjct: 228 KISDYITQLRMVGKGHGVWHFDQMLLN 254

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282781|dbj|BAJ34256.1| unnamed protein product [Thellungiella halophila]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 168/253 (66%), Positives = 205/253 (81%), Gaps = 7/253 (2%)

Query: 11  LAAKQLAGLITSSSCYTK------STASLVKLGCISPRTKRSLKVSAA-VDANSMPLTGV 63
           +A++ L+   T  +   K      +++    +G     + R++ V+AA VD N+MP+TGV
Sbjct: 1   MASRALSSFTTKPAPSPKPHGVSSASSPAFSIGFSRKTSGRAMVVAAAPVDTNNMPMTGV 60

Query: 64  VFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRD 123
           VFQPFEEVKK  L +P+   +SLARQ Y D  EAAINEQINVEYNVSYVYH++YAYFDRD
Sbjct: 61  VFQPFEEVKKADLAIPIKSHVSLARQGYADATEAAINEQINVEYNVSYVYHSMYAYFDRD 120

Query: 124 NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAM 183
           N+AL+GLAKFFKESSEEER HAEKFMEYQN RGG+VKLH I+ P SEF+HAEKGDALYAM
Sbjct: 121 NVALKGLAKFFKESSEEERGHAEKFMEYQNKRGGRVKLHPIVSPISEFEHAEKGDALYAM 180

Query: 184 ELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK 243
           ELALSLEKLTNEKLL++HSVA  NNDPQ+A+FVE+EFLGEQ+EAI KI+ +++QLRMVGK
Sbjct: 181 ELALSLEKLTNEKLLNVHSVATENNDPQLADFVETEFLGEQIEAIKKISDFITQLRMVGK 240

Query: 244 GHGLWHFDQMLLH 256
           GHG+WHFDQ LL+
Sbjct: 241 GHGVWHFDQSLLN 253

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29839389|sp|Q96540.1|FRI1_BRANA RecName: Full=Ferritin-1, chloroplastic; Flags: Precursor gi|1527217|gb|AAB53099.1| ferritin [Brassica napus]

 Score =  351 bits (900), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 160/207 (77%), Positives = 186/207 (89%)

Query: 50  SAAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNV 109
           S+ VD N+MP+TGVVFQPFEEVKK  L +P++   SLARQ+Y D  EAAINEQINVEYNV
Sbjct: 48  SSTVDTNNMPMTGVVFQPFEEVKKADLAIPITSNASLARQRYADSSEAAINEQINVEYNV 107

Query: 110 SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS 169
           SYVYH++YAYFDRDN+AL+GLAKFFKESS+EEREHAEKFMEYQN RGG+V LH I+ P S
Sbjct: 108 SYVYHSMYAYFDRDNVALKGLAKFFKESSDEEREHAEKFMEYQNQRGGRVTLHPIVSPIS 167

Query: 170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAIN 229
           +F+HAEKGDALYAMELALSLEKLTNEKLL+LH VA  NNDPQ+A+FVESEFLGEQ+EAI 
Sbjct: 168 DFEHAEKGDALYAMELALSLEKLTNEKLLNLHRVASENNDPQLADFVESEFLGEQIEAIK 227

Query: 230 KIAKYVSQLRMVGKGHGLWHFDQMLLH 256
           KI+ +++QLRMVGKGHG+WHFDQMLL+
Sbjct: 228 KISDFITQLRMVGKGHGVWHFDQMLLN 254

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2149755	255	FER1 "ferretin 1" [Arabidopsis	0.812	0.831	0.657	9.6e-73
TAIR|locus:2074683	253	FER2 "ferritin 2" [Arabidopsis	0.831	0.857	0.628	7.2e-68
TAIR|locus:2063104	259	FER4 "ferritin 4" [Arabidopsis	0.793	0.799	0.649	5.1e-67
TAIR|locus:2078481	259	FER3 "ferritin 3" [Arabidopsis	0.923	0.930	0.584	1.1e-66
WB|WBGene00001501	170	ftn-2 [Caenorhabditis elegans	0.620	0.952	0.439	2e-31
UNIPROTKB|Q9TYS3	170	ftn-2 "Ferritin" [Caenorhabdit	0.620	0.952	0.439	2e-31
WB|WBGene00001500	170	ftn-1 [Caenorhabditis elegans	0.620	0.952	0.397	1.3e-29
UNIPROTKB|O16453	170	ftn-1 "Protein FTN-1" [Caenorh	0.620	0.952	0.397	1.3e-29
UNIPROTKB|F1NL14	209	FTH1 "Ferritin" [Gallus gallus	0.647	0.808	0.409	9.1e-29
UNIPROTKB|P08267	180	FTH "Ferritin heavy chain" [Ga	0.647	0.938	0.409	9.1e-29

TAIR|locus:2149755 FER1 "ferretin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 140/213 (65%), Positives = 166/213 (77%)

Query:    45 RSLKVSAA-VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQI 103
             R++ V+AA VD N+MP+TGVVFQPFEEVKK             ARQ++ D  EA INEQI
Sbjct:    43 RAVVVAAATVDTNNMPMTGVVFQPFEEVKKADLAIPITSHASLARQRFADASEAVINEQI 102

Query:   104 NVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHS 163
             NVEYNVSYVYH++YAYFDRDN+A++GL                  MEYQN RGG+VKLH 
Sbjct:   103 NVEYNVSYVYHSMYAYFDRDNVAMKGLAKFFKESSEEERGHAEKFMEYQNQRGGRVKLHP 162

Query:   164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE 223
             I+ P SEF+HAEKGDALYAMELALSLEKLTNEKLL++H VA  NNDPQ+A+FVESEFLGE
Sbjct:   163 IVSPISEFEHAEKGDALYAMELALSLEKLTNEKLLNVHKVASENNDPQLADFVESEFLGE 222

Query:   224 QVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLH 256
             Q+EAI KI+ Y++QLRM+GKGHG+WHFDQMLL+
Sbjct:   223 QIEAIKKISDYITQLRMIGKGHGVWHFDQMLLN 255

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005506 "iron ion binding" evidence=TAS

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;IMP

GO:0016020 "membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0010043 "response to zinc ion" evidence=IEP

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2074683 FER2 "ferritin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 137/218 (62%), Positives = 158/218 (72%)

Query:    40 SPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAI 99
             SP   R   V AA   N+  LTGVVF+PFEEVKKE            AR K+ D+ E+AI
Sbjct:    35 SPSGSR-FSVQAAKGTNTKSLTGVVFEPFEEVKKEMELVPTTPFVSLARHKFSDDSESAI 93

Query:   100 NEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKV 159
             N+QINVEYNVSYVYHALYAYFDRDN+ L+G                   MEYQN RGG+V
Sbjct:    94 NDQINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFMEYQNKRGGRV 153

Query:   160 KLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE 219
             KL SI+ P SEFDH EKGDAL+AMELALSLEKLTNEKLL L SV  +NND Q+ +FVESE
Sbjct:   154 KLQSILMPVSEFDHEEKGDALHAMELALSLEKLTNEKLLKLQSVGVKNNDVQLVDFVESE 213

Query:   220 FLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHE 257
             FLGEQVEAI KI++YV+QLR +GKGHG+WHFDQMLL++
Sbjct:   214 FLGEQVEAIKKISEYVAQLRRIGKGHGVWHFDQMLLND 251

GO:0006826 "iron ion transport" evidence=IEA;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0000302 "response to reactive oxygen species" evidence=RCA

GO:0010039 "response to iron ion" evidence=RCA

GO:0015979 "photosynthesis" evidence=RCA

GO:0055072 "iron ion homeostasis" evidence=RCA

TAIR|locus:2063104 FER4 "ferritin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
 Identities = 135/208 (64%), Positives = 156/208 (75%)

Query:    51 AAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVS 110
             A+  + +  L+GVVF+PF+EVKKE            ARQKY DECEAAINEQINVEYNVS
Sbjct:    53 ASKSSTTDALSGVVFEPFKEVKKELDLVPTSSHLSLARQKYSDECEAAINEQINVEYNVS 112

Query:   111 YVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSE 170
             YVYHA+YAYFDRDNIAL+GL                  MEYQN RGG+VKL SI+ P SE
Sbjct:   113 YVYHAMYAYFDRDNIALKGLAKFFKESSLEEREHAEKLMEYQNKRGGRVKLQSIVMPLSE 172

Query:   171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK 230
             F+H +KGDALY MELALSLEKL NEKLL+LHSVA +NND  +A+F+ESEFL EQVEAI  
Sbjct:   173 FEHVDKGDALYGMELALSLEKLVNEKLLNLHSVASKNNDVHLADFIESEFLTEQVEAIKL 232

Query:   231 IAKYVSQLRMVGKGHGLWHFDQMLLHEG 258
             I++YV+QLR VGKGHG WHF+QMLL EG
Sbjct:   233 ISEYVAQLRRVGKGHGTWHFNQMLL-EG 259

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2078481 FER3 "ferritin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 145/248 (58%), Positives = 170/248 (68%)

Query:    14 KQLAGLITSSSCYTKSTASLVKLGCISPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKK 73
             K ++ L +SSS  + S  S  K G +S      L+ S +    +  L+GVVF+PFEEVKK
Sbjct:    19 KDISPLFSSSSSIS-SPVSSGKSGNLS----FPLRASKSSTTTTSTLSGVVFEPFEEVKK 73

Query:    74 EXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXX 133
             E            AR  Y  ECEAA+NEQINVEYNVSYVYHALYAYFDRDN+AL+GL   
Sbjct:    74 EMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKF 133

Query:   134 XXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLT 193
                            MEYQN RGG+VKL  ++ P SEFDH EKGDALYAMELALSLEKL 
Sbjct:   134 FKESSVEEREHAELLMEYQNKRGGRVKLQPMVLPQSEFDHPEKGDALYAMELALSLEKLV 193

Query:   194 NEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQM 253
             NEKLL+LHSVA +N+D Q+A+F+ES FL EQVEAI KI++YVSQLR +GKGHG WHFDQ 
Sbjct:   194 NEKLLNLHSVASKNDDVQLADFIESVFLNEQVEAIKKISEYVSQLRRLGKGHGTWHFDQE 253

Query:   254 LLHEGDAA 261
             LL  G AA
Sbjct:   254 LL--GAAA 259

GO:0006826 "iron ion transport" evidence=IEA;IGI;ISS

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;ISS

GO:0008199 "ferric iron binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046914 "transition metal ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010039 "response to iron ion" evidence=IEP;RCA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IGI;RCA

GO:0009908 "flower development" evidence=IGI

GO:0015979 "photosynthesis" evidence=IGI;RCA

GO:0048366 "leaf development" evidence=IGI

GO:0055072 "iron ion homeostasis" evidence=IGI;RCA

GO:0009570 "chloroplast stroma" evidence=IDA

WB|WBGene00001501 ftn-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/166 (43%), Positives = 100/166 (60%)

Query:    87 ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXX 146
             ARQ Y  E EAA+N+QIN+E   SYVY ++  YFDRD++AL  +                
Sbjct:     4 ARQNYHSEVEAAVNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHAT 63

Query:   147 XXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR 206
               M  QNLRGG+V L  I +P ++    E G AL A E AL+LEK  NE LL LHS A  
Sbjct:    64 ELMRVQNLRGGRVVLQDIQKPEND----EWGTALKAFEAALALEKFNNESLLKLHSTAGN 119

Query:   207 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQ 252
             +ND  + +F+E ++L EQV++IN+ A+ V+ L+ VG G G + FD+
Sbjct:   120 HNDAHLTDFIEEKYLDEQVKSINEFARMVANLKRVGPGVGEYVFDK 165

GO:0006826 "iron ion transport" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

UNIPROTKB|Q9TYS3 ftn-2 "Ferritin" [Caenorhabditis elegans (taxid:6239)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 73/166 (43%), Positives = 100/166 (60%)

Query:    87 ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXX 146
             ARQ Y  E EAA+N+QIN+E   SYVY ++  YFDRD++AL  +                
Sbjct:     4 ARQNYHSEVEAAVNKQINIELYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHAT 63

Query:   147 XXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR 206
               M  QNLRGG+V L  I +P ++    E G AL A E AL+LEK  NE LL LHS A  
Sbjct:    64 ELMRVQNLRGGRVVLQDIQKPEND----EWGTALKAFEAALALEKFNNESLLKLHSTAGN 119

Query:   207 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQ 252
             +ND  + +F+E ++L EQV++IN+ A+ V+ L+ VG G G + FD+
Sbjct:   120 HNDAHLTDFIEEKYLDEQVKSINEFARMVANLKRVGPGVGEYVFDK 165

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00001500 ftn-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/166 (39%), Positives = 99/166 (59%)

Query:    87 ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXX 146
             ARQ Y DE EAA+N+QINVE   SYVY ++ A+FDRD+IALR +                
Sbjct:     4 ARQNYHDEVEAAVNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHAT 63

Query:   147 XXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR 206
               M  Q +RGG+V + +I +P  +    E G  L A E AL+LE+  N  LL LH +A++
Sbjct:    64 ELMRIQAVRGGRVAMQNIQKPEKD----EWGTVLEAFEAALALERANNASLLKLHGIAEQ 119

Query:   207 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQ 252
              ND  +  +++ ++L EQV +IN+ A+Y++ ++  G G G + FD+
Sbjct:   120 RNDAHLTNYIQEKYLEEQVHSINEFARYIANIKRAGPGLGEYLFDK 165

GO:0006879 "cellular iron ion homeostasis" evidence=IEA;IMP

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|O16453 ftn-1 "Protein FTN-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 66/166 (39%), Positives = 99/166 (59%)

Query:    87 ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXX 146
             ARQ Y DE EAA+N+QINVE   SYVY ++ A+FDRD+IALR +                
Sbjct:     4 ARQNYHDEVEAAVNKQINVELYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHAT 63

Query:   147 XXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR 206
               M  Q +RGG+V + +I +P  +    E G  L A E AL+LE+  N  LL LH +A++
Sbjct:    64 ELMRIQAVRGGRVAMQNIQKPEKD----EWGTVLEAFEAALALERANNASLLKLHGIAEQ 119

Query:   207 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQ 252
              ND  +  +++ ++L EQV +IN+ A+Y++ ++  G G G + FD+
Sbjct:   120 RNDAHLTNYIQEKYLEEQVHSINEFARYIANIKRAGPGLGEYLFDK 165

GO:0042802 "identical protein binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NL14 FTH1 "Ferritin" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 72/176 (40%), Positives = 102/176 (57%)

Query:    88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
             RQ Y  +CEAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct:    38 RQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 97

Query:   148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
              M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct:    98 LMKLQNQRGGRIFLQDIKKP--DRDDWENG--LTAMECALHLEKNVNQSLLELHKLATEK 153

Query:   208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKG-HGL--WHFDQMLLHEGDA 260
             NDP + +F+E+ +L EQV+AI ++  +V+ LR +G   +G+  + FD+  L E D+
Sbjct:   154 NDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRKMGAPKYGMAEYLFDKHTLGESDS 209

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

UNIPROTKB|P08267 FTH "Ferritin heavy chain" [Gallus gallus (taxid:9031)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 72/176 (40%), Positives = 102/176 (57%)

Query:    88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
             RQ Y  +CEAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct:     9 RQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 68

Query:   148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
              M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct:    69 LMKLQNQRGGRIFLQDIKKP--DRDDWENG--LTAMECALHLEKNVNQSLLELHKLATEK 124

Query:   208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKG-HGL--WHFDQMLLHEGDA 260
             NDP + +F+E+ +L EQV+AI ++  +V+ LR +G   +G+  + FD+  L E D+
Sbjct:   125 NDPHLCDFIETHYLDEQVKAIKQLGDHVTNLRKMGAPKYGMAEYLFDKHTLGESDS 180

GO:0006826 "iron ion transport" evidence=IEA

GO:0008199 "ferric iron binding" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0004322 "ferroxidase activity" evidence=IEA

GO:0006955 "immune response" evidence=ISS

GO:0008285 "negative regulation of cell proliferation" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SRL5	FRI2_ARATH	1, ., 1, 6, ., 3, ., 1	0.7045	0.8390	0.8656	no	no
Q39101	FRI1_ARATH	1, ., 1, 6, ., 3, ., 1	0.7696	0.7816	0.8	yes	no
Q41709	FRI2_VIGUN	1, ., 1, 6, ., 3, ., 1	0.8029	0.7777	0.812	N/A	no
P19975	FRI1_PEA	1, ., 1, 6, ., 3, ., 1	0.7401	0.7816	0.8063	N/A	no
Q94FY2	FRI_MALXI	1, ., 1, 6, ., 3, ., 1	0.6525	0.9386	0.98	N/A	no
Q948P5	FRI4_SOYBN	1, ., 1, 6, ., 3, ., 1	0.7511	0.8467	0.8947	no	no
Q948P6	FRI3_SOYBN	1, ., 1, 6, ., 3, ., 1	0.7788	0.8314	0.8476	yes	no
Q94IC4	FRI2_SOYBN	1, ., 1, 6, ., 3, ., 1	0.7302	0.8199	0.8326	no	no
O65100	FRI3_VIGUN	1, ., 1, 6, ., 3, ., 1	0.7464	0.8160	0.8320	N/A	no
P29036	FRI1_MAIZE	1, ., 1, 6, ., 3, ., 1	0.6516	0.9157	0.9409	N/A	no
Q96540	FRI1_BRANA	1, ., 1, 6, ., 3, ., 1	0.7729	0.7931	0.8149	N/A	no
P29390	FRI2_MAIZE	1, ., 1, 6, ., 3, ., 1	0.7437	0.7586	0.7857	N/A	no
Q8RX97	FRI1_TOBAC	1, ., 1, 6, ., 3, ., 1	0.7323	0.8160	0.8486	N/A	no
P25699	FRI_PHAVU	1, ., 1, 6, ., 3, ., 1	0.6553	0.9616	0.9881	N/A	no
Q8H1T3	FRI2_TOBAC	1, ., 1, 6, ., 3, ., 1	0.7535	0.8084	0.8146	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.16.3.1	0.991
3rd Layer	1.16.3	0.976

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0023033201	RecName- Full=Ferritin; (262 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.VI.1271.1	ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (381 aa)						•	•		0.902
	eugene3.01350026	ferrochelatase (EC-4.99.1.1); Catalyzes the ferrous insertion into protoporphyrin IX (By simila [...] (506 aa)						•			0.899

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd01056	161	cd01056, Euk_Ferritin, eukaryotic ferritins	6e-74
cd00904	160	cd00904, Ferritin, Ferritin iron storage proteins	1e-43
pfam00210	142	pfam00210, Ferritin, Ferritin-like domain	3e-34
cd01055	156	cd01055, Nonheme_Ferritin, nonheme-containing ferr	5e-31
COG1528	167	COG1528, Ftn, Ferritin-like protein [Inorganic ion	3e-19
cd00657	130	cd00657, Ferritin_like, Ferritin-like superfamily	6e-05
PRK10304	165	PRK10304, PRK10304, ferritin; Provisional	7e-05

>gnl|CDD|153114 cd01056, Euk_Ferritin, eukaryotic ferritins

 Score =  222 bits (568), Expect = 6e-74
 Identities = 91/163 (55%), Positives = 121/163 (74%), Gaps = 7/163 (4%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           +ECEAA+N+QIN+E N SYVY ++ AYFDRD++AL G AKFF++ S+EEREHAEK ++YQ
Sbjct: 2   EECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQ 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           N RGG+V L  I +P    +  E G  L A+ELAL LEKL N+ LL LH +A  +NDP +
Sbjct: 62  NKRGGRVVLQDIKKP----EKDEWGSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHL 117

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK---GHGLWHFDQ 252
           A+F+ESEFL EQVE+I K+A Y++ L+ VGK   G G + FD+
Sbjct: 118 ADFLESEFLEEQVESIKKLAGYITNLKRVGKPQSGLGEYLFDK 160

Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues. Length = 161

>gnl|CDD|153098 cd00904, Ferritin, Ferritin iron storage proteins

 Score =  145 bits (366), Expect = 1e-43
 Identities = 76/158 (48%), Positives = 106/158 (67%), Gaps = 5/158 (3%)

Query: 94  ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153
           + EAA+N Q+N+E   SY Y ++  YFDRD++AL+G+A FFKE ++EEREHAEKF +YQN
Sbjct: 3   KVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQN 62

Query: 154 LRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMA 213
            RGG+V+L  I +PPS+    E G  L AME AL LEK  N+ LL LH +A    DP + 
Sbjct: 63  ERGGRVELQDIEKPPSD----EWGGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLC 118

Query: 214 EFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
           +F+ES FL EQV+ I ++   ++ L R+ G+  G   +
Sbjct: 119 DFLESHFLDEQVKEIKQVGDILTNLERLNGQQAGSGEY 156

Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged residues on the protein shell inner surface of the L subunits promote ferrihydrite nucleation. Most plant ferritins combine both oxidase and nucleation functions in one chain: they have four interior glutamate residues as well as seven ferroxidase center residues. Length = 160

>gnl|CDD|215791 pfam00210, Ferritin, Ferritin-like domain

 Score =  120 bits (302), Expect = 3e-34
 Identities = 54/146 (36%), Positives = 72/146 (49%), Gaps = 4/146 (2%)

Query: 96  EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155
             A+NEQ+  E   SY Y  +  YFD     L GLA+FF E +EEEREHA+K  E     
Sbjct: 1   IEALNEQLADELTASYQYLQMAWYFD--GPGLPGLAEFFDEQAEEEREHADKLAERILAL 58

Query: 156 GGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEF 215
           GGK  L  + +        E G  L A+E AL  EK   E L  L  +A+   D   A+F
Sbjct: 59  GGKPVLTPV-ELLEIEPPDEFGSVLEALEAALEHEKEVTESLRELIELAEEEGDYATADF 117

Query: 216 VESEFLGEQVEAINKIAKYVSQLRMV 241
           +E  FL EQ E    +   + +L+ +
Sbjct: 118 LE-WFLEEQEEHEWFLEALLEKLKRI 142

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 142

>gnl|CDD|153113 cd01055, Nonheme_Ferritin, nonheme-containing ferritins

 Score =  112 bits (282), Expect = 5e-31
 Identities = 63/160 (39%), Positives = 89/160 (55%), Gaps = 9/160 (5%)

Query: 96  EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR 155
           E A+NEQIN+E   SY+Y A+ A+FD  +  L G A FF+  ++EEREHA KF +Y N R
Sbjct: 5   EKALNEQINLELYSSYLYLAMAAWFD--SKGLDGFANFFRVQAQEEREHAMKFFDYLNDR 62

Query: 156 GGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEF 215
           GG+V+L +I  PPSEF        L   E AL  E+   E + +L  +A    D     F
Sbjct: 63  GGRVELPAIEAPPSEF-----ESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNF 117

Query: 216 VESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
           ++  F+ EQVE        + +L++ G  G GL+  D+ L
Sbjct: 118 LQ-WFVKEQVEEEALARDILDKLKLAGDDGGGLYMLDKEL 156

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite. Length = 156

>gnl|CDD|224445 COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]

 Score = 81.9 bits (203), Expect = 3e-19
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157
            +NEQ+N+E+  S +Y  + A+    + +L G AKF +  ++EE  HA K   Y N RG 
Sbjct: 9   LLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGA 66

Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           + +L +I  PP++F            E  L  E+     +  L  VA    D     F++
Sbjct: 67  RPELKAIEAPPNKFS-----SLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ 121

Query: 218 SEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQMLL 255
             F+ EQVE        + +L + G  G GL+  D+ L 
Sbjct: 122 -WFVAEQVEEEKLFKTILDKLELAGNDGEGLYLIDKELK 159

Length = 167

>gnl|CDD|153097 cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 28/122 (22%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
             +N+ +  EY     Y  L A     +     L     E ++EER HA+   E     G
Sbjct: 1   RLLNDALAGEYAAIIAYGQLAARAPDPD-----LKDELLEIADEERRHADALAERLRELG 55

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G   L       +        D   A+  AL +E         L   AD   DP++   +
Sbjct: 56  GTPPLPPAHLLAAYALPKTSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLL 112

Query: 217 ES 218
           E 
Sbjct: 113 ER 114

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF). Length = 130

>gnl|CDD|182367 PRK10304, PRK10304, ferritin; Provisional

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 99  INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK 158
           +NEQ+N+E   S +Y  + A+         G A F +  ++EE  H ++  +Y    G  
Sbjct: 10  LNEQMNLELYSSLLYQQMSAWCSYH--TFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNL 67

Query: 159 VKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVES 218
            +++++  P +E+      D L+  +     E+L  +K+  L   A  N D     F++ 
Sbjct: 68  PRINTVESPFAEY---SSLDELF--QETYKHEQLITQKINELAHAAMTNQDYPTFNFLQW 122

Query: 219 EFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
            ++ EQ E        + +L + GK G GL+  D+ L
Sbjct: 123 -YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKEL 158

Length = 165

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG2332	178	consensus Ferritin [Inorganic ion transport and me	100.0
PRK15022	167	ferritin-like protein; Provisional	100.0
PRK10304	165	ferritin; Provisional	100.0
cd00904	160	Ferritin Ferritin iron storage proteins. Ferritins	100.0
COG1528	167	Ftn Ferritin-like protein [Inorganic ion transport	100.0
cd01056	161	Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferr	100.0
cd01055	156	Nonheme_Ferritin nonheme-containing ferritins. Non	100.0
PRK10635	158	bacterioferritin; Provisional	99.96
TIGR00754	157	bfr bacterioferritin. Bacterioferritin is a homomu	99.96
PF00210	142	Ferritin: Ferritin-like domain; InterPro: IPR00833	99.94
cd00907	153	Bacterioferritin Bacterioferritin, ferritin-like d	99.94
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	99.9
cd01052	148	DPSL DPS-like protein, ferritin-like diiron-bindin	99.89
COG2193	157	Bfr Bacterioferritin (cytochrome b1) [Inorganic io	99.87
cd01046	123	Rubrerythrin_like rubrerythrin-like, diiron-bindin	99.81
PRK13456	186	DNA protection protein DPS; Provisional	99.68
cd01043	139	DPS DPS protein, ferritin-like diiron-binding doma	99.35
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	99.29
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	99.28
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	98.92
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	98.92
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	98.77
PRK09448	162	DNA starvation/stationary phase protection protein	98.64
COG2406	172	Protein distantly related to bacterial ferritins [	98.56
COG0783	156	Dps DNA-binding ferritin-like protein (oxidative d	98.27
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	98.25
COG1633	176	Uncharacterized conserved protein [Function unknow	98.18
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.88
PF13668	137	Ferritin_2: Ferritin-like domain	97.84
COG1592	166	Rubrerythrin [Energy production and conversion]	97.73
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	97.18
TIGR02284	139	conserved hypothetical protein. Members of this pr	96.53
cd01050	297	Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like	96.46
cd01048	135	Ferritin_like_AB2 Uncharacterized family of ferrit	96.05
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	96.05
PF03405	330	FA_desaturase_2: Fatty acid desaturase; InterPro:	96.05
PF09537	111	DUF2383: Domain of unknown function (DUF2383); Int	95.25
PF05974	159	DUF892: Domain of unknown function (DUF892); Inter	93.15
cd07910	180	MiaE MiaE tRNA-modifying nonheme diiron monooxygen	92.75
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	92.67
PF04305	253	DUF455: Protein of unknown function (DUF455); Inte	91.58
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	89.76
COG1633	176	Uncharacterized conserved protein [Function unknow	88.97
PF05067	283	Mn_catalase: Manganese containing catalase; InterP	88.12
cd01052	148	DPSL DPS-like protein, ferritin-like diiron-bindin	87.39
COG3546	277	Mn-containing catalase [Inorganic ion transport an	87.18
PF12902	227	Ferritin-like: Ferritin-like; PDB: 3HL1_A.	86.7
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	86.68
cd00907	153	Bacterioferritin Bacterioferritin, ferritin-like d	86.33
PF00210	142	Ferritin: Ferritin-like domain; InterPro: IPR00833	85.75
cd01046	123	Rubrerythrin_like rubrerythrin-like, diiron-bindin	84.81
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	84.4
PLN00179	390	acyl- [acyl-carrier protein] desaturase	80.31

>KOG2332 consensus Ferritin [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-48  Score=333.53  Aligned_cols=170  Identities=53%  Similarity=0.860  Sum_probs=164.8

Q ss_pred             ccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024844           83 LLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH  162 (261)
Q Consensus        83 ~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~  162 (261)
                      ..+.+|++++++|+.++|.|||.|+++||+|++|++||+||++++|||++||.++|+|||+||++||+|+|+|||+|+++
T Consensus         5 ~~~~~r~~~~~~~~~~in~~in~el~~sy~Ylsma~yf~rd~v~l~g~~~ff~~~s~eereha~klm~~~n~rgg~i~l~   84 (178)
T KOG2332|consen    5 MSSEARQNYHDEAEAAINSQINLELNASYVYLSMAAYFDRDDVALKGFAKFFLKQSQEEREHAEKLMKTQNMRGGRIELQ   84 (178)
T ss_pred             chHHHhhcchhhccchhhhhccchhccchhhhhhhhccCccccchhhhhhhhhhhhhhhhhhHHHHHHHHHHhCCccccc
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      +|.+|..    .+|++.+++||.||.+||.|+++|.+||.+|.+.+|++++||||++||.|||+.|++|++++++++++|
T Consensus        85 ~i~~P~~----~ew~~~l~ale~al~LEk~vn~sLl~Lh~lA~~knD~hL~dflE~~fL~eQVksIkeL~~~~~~l~k~~  160 (178)
T KOG2332|consen   85 DIKKPEL----DEWGKGLEALEAALHLEKNVNQSLLELHSLATKKNDPHLCDFLESHFLNEQVKSIKELSDYLANLKKMG  160 (178)
T ss_pred             ccccccc----chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhhhHHHHHHHHHHHHHHHhHHhcc
Confidence            9999954    678999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ---CCchhhHHhHHhhc
Q 024844          243 ---KGHGLWHFDQMLLH  256 (261)
Q Consensus       243 ---~g~g~ylfD~~L~~  256 (261)
                         .|+|+|+||+++.+
T Consensus       161 ~~~~g~~~~lfd~~~~~  177 (178)
T KOG2332|consen  161 APDGGLGEYLFDKYLLS  177 (178)
T ss_pred             CCCCchhhhhhhhhhcc
Confidence               78999999999875

>PRK15022 ferritin-like protein; Provisional

Probab=100.00  E-value=3.5e-47  Score=325.39  Aligned_cols=160  Identities=18%  Similarity=0.223  Sum_probs=153.8

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      .+++++.+||+|||.|++|||+|++||+||+  +.+|||||+||+.+|+|||+||+||++|+++|||+|.+++|++|+.+
T Consensus         2 ~~~~~~~~LN~QIn~E~~aSy~YLsMa~~~~--~~~L~GfA~ff~~qa~EEreHA~k~~~yl~~rGg~v~l~~I~~P~~~   79 (167)
T PRK15022          2 ATAGMLLKLNSQMNLEFYASNLYLHLSEWCS--EQSLNGTATFLRAQAQSNVTQMMRMFNFMKSAGATPIVKAIDVPGEK   79 (167)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceeeCCCCCCccc
Confidence            5789999999999999999999999999998  56999999999999999999999999999999999999999999876


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     ++++++|+.+|+||+.||+.|++|+++|.+++|++|++||+ ||+.||+++++.+.++++.++++| +|.|+|+
T Consensus        80 ~-----~s~~e~fe~al~hEk~vt~~I~~L~~~A~~~~D~~t~~FL~-wfv~EQ~eEe~~~~~ild~l~~~~~~g~g~~~  153 (167)
T PRK15022         80 L-----NSLEELFQKTLEEYEQRSSTLAQLADEAKALNDDSTLNFLR-DLEKEQQHDGLLLQTILDEVRSAKLAGLCPVQ  153 (167)
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhH
Confidence            5     57899999999999999999999999999999999999999 999999999999999999999998 7899999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      ||++++.+.
T Consensus       154 ~D~~~~~~~  162 (167)
T PRK15022        154 TDQHLLNVV  162 (167)
T ss_pred             hhHHHHHhh
Confidence            999998764

>PRK10304 ferritin; Provisional

Probab=100.00  E-value=1.6e-44  Score=308.52  Aligned_cols=160  Identities=23%  Similarity=0.390  Sum_probs=153.7

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++++.+||+|||.|++|||+|++||.||+  ++||||||+||+.+|.|||+||++|++|+++|||+|.+++|++|+.+
T Consensus         2 ~~~~i~~~Ln~qin~El~As~~Yl~ma~~~~--~~gl~g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~   79 (165)
T PRK10304          2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE   79 (165)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccc
Confidence            6899999999999999999999999999999  67999999999999999999999999999999999999999999876


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     .++.++|+.+|++|+.+++.|++++++|.+++|+.|++||+ |||+||||+++.+++++++++++| +|.|+|+
T Consensus        80 ~-----~s~~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~-~fl~EQveEe~~~~~l~~~l~~~~~~g~~~y~  153 (165)
T PRK10304         80 Y-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYF  153 (165)
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhCCCcchHHH
Confidence            5     56899999999999999999999999999999999999999 999999999999999999999999 6899999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      ||+++....
T Consensus       154 ~D~~l~~~~  162 (165)
T PRK10304        154 IDKELSTLD  162 (165)
T ss_pred             HhHHHHHhh
Confidence            999997654

>cd00904 Ferritin Ferritin iron storage proteins

Probab=100.00  E-value=1.1e-44  Score=306.92  Aligned_cols=155  Identities=49%  Similarity=0.874  Sum_probs=149.4

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC-C
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS-E  170 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~-~  170 (261)
                      +++|+++||+|||.|+++||+|++||+||++++|||||||+||+.+|+|||+||++|++||++|||+|+++.|++|.. +
T Consensus         1 ~~~~~~~Ln~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~eE~~HA~~l~~yi~~rgg~~~l~~i~~~~~~~   80 (160)
T cd00904           1 SEKVEAAVNRQLNLELYASYTYLSMATYFDRDDVALKGVAHFFKEQAQEEREHAEKFYKYQNERGGRVELQDIEKPPSDE   80 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccCcCCCCcccc
Confidence            578999999999999999999999999999999999999999999999999999999999999999999999999987 4


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHh-hHHHHHHHHHHHHHHHHHHHhcc-C--Cch
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQVEAINKIAKYVSQLRMVG-K--GHG  246 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~-FL~EQve~ik~l~~~l~~L~r~g-~--g~g  246 (261)
                      |     ++++++|+.+|++|+.+++.|++|+++|.+++|+.|++||+ | ||+||+++++++++++++++++| +  |.|
T Consensus        81 ~-----~~~~e~~e~al~~Ek~v~~~i~~l~~~A~~~~D~~t~~fl~-~~fi~eQ~ee~~~~~~~l~~l~~~~~~~~~~~  154 (160)
T cd00904          81 W-----GGTLDAMEAALKLEKFVNQALLDLHELASEEKDPHLCDFLE-SHFLDEQVKEIKQVGDILTNLERLNGQQAGSG  154 (160)
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhhcCCCCCce
Confidence            4     57899999999999999999999999999999999999999 8 99999999999999999999998 4  789


Q ss_pred             hhHHhH
Q 024844          247 LWHFDQ  252 (261)
Q Consensus       247 ~ylfD~  252 (261)
                      +|+||+
T Consensus       155 ~~~~D~  160 (160)
T cd00904         155 EYLFDR  160 (160)
T ss_pred             eeeeCC
Confidence            999996

Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol

>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-43  Score=299.61  Aligned_cols=160  Identities=29%  Similarity=0.484  Sum_probs=154.6

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      .++++.++||+|||.|+++||+|++||+||+  +.+|||+|+||+.||.||+.||+||++|++.||++|.+..|.+|+.+
T Consensus         2 ls~~~~~~LN~Q~N~E~yas~lYl~maa~~~--~~~l~G~A~f~~~qa~EE~~H~~k~~~yl~~~g~~~~l~~I~~P~~~   79 (167)
T COG1528           2 LSEKMIELLNEQMNLEFYASNLYLQMAAWCS--SESLPGFAKFLRAQAQEELTHAMKLFNYLNERGARPELKAIEAPPNK   79 (167)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCcCCCccc
Confidence            5789999999999999999999999999999  57999999999999999999999999999999999999999999988


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |+     ++.++|+.+|++|+.||+.|++|.++|.+++|+.|.+||+ ||+.||+|+++.++++++.++++| +|.|+|+
T Consensus        80 ~~-----s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLq-Wfv~EQ~eEe~l~~~I~d~~~~ag~~~~~l~~  153 (167)
T COG1528          80 FS-----SLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQ-WFVAEQVEEEKLFKTILDKLELAGNDGEGLYL  153 (167)
T ss_pred             cC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhh
Confidence            75     5799999999999999999999999999999999999999 999999999999999999999999 7899999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      +|++|+++.
T Consensus       154 ~D~~L~~~~  162 (167)
T COG1528         154 IDKELKNRA  162 (167)
T ss_pred             hHHHHHhhc
Confidence            999999863

>cd01056 Euk_Ferritin eukaryotic ferritins

Probab=100.00  E-value=1.4e-41  Score=287.67  Aligned_cols=156  Identities=57%  Similarity=0.963  Sum_probs=148.6

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC-CC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-SE  170 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~-~~  170 (261)
                      +++|+.+||+|||.|++|||+|++||.||++.++|+|||++||+.+|+|||+||++|++||+.|||+|++++|++|. ..
T Consensus         1 ~~~i~~~Ln~~i~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~   80 (161)
T cd01056           1 HEECEAALNKQINLELNASYVYLSMAAYFDRDDVALPGFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDE   80 (161)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcc
Confidence            47899999999999999999999999999977779999999999999999999999999999999999999999997 44


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHh-hHHHHHHHHHHHHHHHHHHHhccC---Cch
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE-FLGEQVEAINKIAKYVSQLRMVGK---GHG  246 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~-FL~EQve~ik~l~~~l~~L~r~g~---g~g  246 (261)
                      |     .++.++|+.+|++|+.+++.|++++++|.+++|+.|.+||+ | ||.||+++++++++++++++++++   |.|
T Consensus        81 ~-----~~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~-~~fl~eQ~e~~~~~~~~l~~l~~~~~~~~~~~  154 (161)
T cd01056          81 W-----GSGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLE-SEFLEEQVESIKKLAGYITNLKRVGKPQSGLG  154 (161)
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHhcCCCCCce
Confidence            4     57899999999999999999999999999999999999999 7 999999999999999999999984   789


Q ss_pred             hhHHhHH
Q 024844          247 LWHFDQM  253 (261)
Q Consensus       247 ~ylfD~~  253 (261)
                      +|+||++
T Consensus       155 ~yl~D~~  161 (161)
T cd01056         155 EYLFDKY  161 (161)
T ss_pred             eeeccCC
Confidence            9999973

Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r

>cd01055 Nonheme_Ferritin nonheme-containing ferritins

Probab=100.00  E-value=7.7e-38  Score=261.44  Aligned_cols=155  Identities=40%  Similarity=0.611  Sum_probs=148.3

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF  171 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f  171 (261)
                      +++|+++||+||+.|+.|+|+|++||.||++  .++|||++||+..|+|||+||+++++|+++|||+|.++++++|+.+ 
T Consensus         1 ~~~~~~~Ln~~~~~El~A~~~Yl~~a~~~~~--~~~~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~-   77 (156)
T cd01055           1 SEKLEKALNEQINLELYSSYLYLAMAAWFDS--KGLDGFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSE-   77 (156)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcc-
Confidence            5789999999999999999999999999995  5999999999999999999999999999999999999999998754 


Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhHH
Q 024844          172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWHF  250 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~ylf  250 (261)
                          |+++.++++.+|.+|+.+++.|++++++|.+++|+.+++|++ ||+++|+++++++++++++++++| +|+|+|+|
T Consensus        78 ----~~~~~~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~-~~l~~q~e~~~~~~~~l~~l~~~g~~~~~~~~~  152 (156)
T cd01055          78 ----FESLLEVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQ-WFVKEQVEEEALARDILDKLKLAGDDGGGLYML  152 (156)
T ss_pred             ----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHh
Confidence                467899999999999999999999999999999999999999 999999999999999999999999 78999999


Q ss_pred             hHHh
Q 024844          251 DQML  254 (261)
Q Consensus       251 D~~L  254 (261)
                      |+.|
T Consensus       153 d~~l  156 (156)
T cd01055         153 DKEL  156 (156)
T ss_pred             cccC
Confidence            9875

Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.

>PRK10635 bacterioferritin; Provisional

Probab=99.96  E-value=2.6e-28  Score=207.32  Aligned_cols=144  Identities=19%  Similarity=0.165  Sum_probs=138.5

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||++++.||.|+++|+.+|.+|+  ++|+++++.+|+.+|.||++||++|++||+.+||.|+++++++|..
T Consensus         2 ~~~~~vi~~LN~~L~~El~Ai~QY~~ha~~~~--~~G~~~la~~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~   79 (158)
T PRK10635          2 KGDVKIINYLNKLLGNELVAINQYFLHARMFK--NWGLMRLNDVEYHESIDEMKHADKYIERILFLEGIPNLQDLGKLNI   79 (158)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            35889999999999999999999999999999  8999999999999999999999999999999999999999988775


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      .|+.++|+.+|.+|+.++..|++++++|.+.+|+.+.++++ |||.++.+|++++.+.+..++++|
T Consensus        80 g------~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~-~iL~dEe~H~~~le~~l~~i~~~G  145 (158)
T PRK10635         80 G------EDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMI-EILADEEGHIDWLETELDLIGKLG  145 (158)
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4      47899999999999999999999999999999999999999 999999999999999999999997

>TIGR00754 bfr bacterioferritin

Probab=99.96  E-value=2.1e-27  Score=199.79  Aligned_cols=142  Identities=20%  Similarity=0.203  Sum_probs=136.6

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF  171 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f  171 (261)
                      +++++++||+||+.|+.++++|+.|+.||.  +++++|++.||+.++.||++||++|++|++.+||.|.+.+++.|+.. 
T Consensus         4 ~~~~~~~LN~~l~~E~~a~~~Y~~~~~~~~--~~~~~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~-   80 (157)
T TIGR00754         4 DPDVIQHLNKQLTNELTAINQYFLHARMQK--NWGLKELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIG-   80 (157)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCC-
Confidence            789999999999999999999999999996  78999999999999999999999999999999999999999888754 


Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                           .++.++++.++++|+.++..|++++++|.+.+|+.|.+||+ ||+.++.++..++..+++.+.++|
T Consensus        81 -----~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~-~~i~eee~h~~~l~~~l~~~~~~g  145 (157)
T TIGR00754        81 -----ETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLE-EILEDEEEHIDWLETQLELIDKLG  145 (157)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH
Confidence                 36889999999999999999999999999999999999999 999999999999999999999997

Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.

>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []

Probab=99.94  E-value=1e-25  Score=181.65  Aligned_cols=137  Identities=36%  Similarity=0.502  Sum_probs=127.0

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCC
Q 024844           96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSE  170 (261)
Q Consensus        96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-----I~~P~~~  170 (261)
                      +++||++|+.|+.+++.|+.++.+|+  +.+++|+++||+++++++++|++++++|+..|||.|....     ++.|+. 
T Consensus         1 i~~Ln~~l~~e~~~~~~y~~~~~~~~--~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~-   77 (142)
T PF00210_consen    1 IEALNEQLALELQASQQYLNMHWNFD--GPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPE-   77 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSS-
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhc--CCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhcccc-
Confidence            57899999999999999999999999  7899999999999999999999999999999999666544     555554 


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                           |.++.++|+.+++.|+.+...++++++.|.+.+|+.|.+|++ +|+.+|.+++.++++++++++|+
T Consensus        78 -----~~~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~-~~l~~~~~~~~~l~~~l~~l~~~  142 (142)
T PF00210_consen   78 -----WTDPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLD-EFLEEEEKHIWMLQAHLTNLKRM  142 (142)
T ss_dssp             -----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhcC
Confidence                 357999999999999999999999999999999999999997 99999999999999999999986

It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain

Probab=99.94  E-value=4.3e-25  Score=183.20  Aligned_cols=143  Identities=21%  Similarity=0.241  Sum_probs=135.5

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF  171 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f  171 (261)
                      ++++++.||++|+.|+.+++.|+.++.+|+  +.+++|+++||+.++.||++||+.+.+|++.+||.|.+.+++.|... 
T Consensus         3 ~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~-   79 (153)
T cd00907           3 DPKVIEALNKALTGELTAINQYFLHARMLE--DWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIG-   79 (153)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcC-
Confidence            678999999999999999999999999998  67999999999999999999999999999999999999888777643 


Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC
Q 024844          172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK  243 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~  243 (261)
                           .+..++++.+++.|+.++..|++++++|.+.+|+.|.+|++ +++.++.+++..++.++..++++|+
T Consensus        80 -----~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~~~~~e~~h~~~l~~~l~~~~~~g~  145 (153)
T cd00907          80 -----EDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLE-EILEDEEEHIDWLETQLDLIDKMGL  145 (153)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCH
Confidence                 25789999999999999999999999999999999999999 9999999999999999999999983

Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=99.90  E-value=1.6e-22  Score=166.12  Aligned_cols=131  Identities=20%  Similarity=0.238  Sum_probs=121.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA  174 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~  174 (261)
                      ..+.||+.+..|+.++++|+.|+.|++  +.|++|+++||+.+|.+|+.||.++++|++.+||.|.     .|+..    
T Consensus         2 t~~~L~~a~~~E~~a~~~Y~~~a~~a~--~~g~~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~-----~~~~~----   70 (134)
T cd01041           2 TEKNLLAAFAGESQARNRYTYFAEKAR--KEGYEQIARLFRATAENEKEHAKGHFKLLKGLGGGDT-----GPPIG----   70 (134)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----CCCCC----
Confidence            357899999999999999999999999  5699999999999999999999999999999999999     55544    


Q ss_pred             ccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          175 EKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       175 e~~d~lea~e~AL~lEk~-vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                       ++++.+.|+.++.+|+. ++..|.+++++|.+++|+.+.+|++ +++.++.+|.+++.+.+.+|
T Consensus        71 -~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~~l~~~l~~l  133 (134)
T cd01041          71 -IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAERYKKALENL  133 (134)
T ss_pred             -cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcc
Confidence             35789999999999995 8899999999999999999999999 99999999999999998765

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain

Probab=99.89  E-value=1.1e-21  Score=161.88  Aligned_cols=135  Identities=21%  Similarity=0.242  Sum_probs=121.9

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc-------
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI-------  164 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I-------  164 (261)
                      .+++++.||++++.|+.++++|+.++.+++  +.++++++++|.+++.||++||+++.+|++.+||.|.....       
T Consensus         4 ~~~~~~~Ln~~la~e~~~~~~y~~~~~~~~--g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~   81 (148)
T cd01052           4 VDELIELLNKAFADEWLAYYYYTILAKHVK--GPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISG   81 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhc
Confidence            367899999999999999999999999999  67899999999999999999999999999999999998653       


Q ss_pred             ---CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          165 ---MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       165 ---~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                         +.|..     ...++.++++.++..|+.+++.+++++++|.. +|+.|++|++ +++.+|.+|++++.++|
T Consensus        82 ~~~~~~~~-----~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~-~D~~t~~ll~-~~l~de~~h~~~~~~~~  148 (148)
T cd01052          82 CKCGYLPP-----DPPDVKGILKVNLKAERCAIKVYKELCDMTHG-KDPVTYDLAL-AILNEEIEHEEDLEELL  148 (148)
T ss_pred             ccccCCCC-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence               22221     22578999999999999999999999999975 9999999999 99999999999998764

DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical

>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.3e-20  Score=157.56  Aligned_cols=143  Identities=20%  Similarity=0.219  Sum_probs=136.7

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      -.+++++.||+++..||.|.++|+.++..++  |||+..++++|+++|.+|+.||++++++|+..+|.|+++++.+-...
T Consensus         3 G~~~Vi~~LN~~L~~EL~ainQYflHsrM~~--~WG~~~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG   80 (157)
T COG2193           3 GDPKVIRLLNEALGLELAAINQYFLHSRMYK--NWGLTKLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIG   80 (157)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccC
Confidence            4589999999999999999999999999999  89999999999999999999999999999999999999998875543


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                            .++.++++..|.+|..+...|.+.+..|.+.+||.+++.++ ..|.++.||++++.+.+..+.++|
T Consensus        81 ------~tv~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~-~iL~deEEHid~LetqL~li~~iG  145 (157)
T COG2193          81 ------ETVKEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLE-EILADEEEHIDWLETQLDLIAKIG  145 (157)
T ss_pred             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HHHcchHHHHHHHHHHHHHHHHHh
Confidence                  57899999999999999999999999999999999999999 999999999999999999999997

>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain

Probab=99.81  E-value=9.7e-19  Score=142.46  Aligned_cols=121  Identities=19%  Similarity=0.184  Sum_probs=111.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA  174 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~  174 (261)
                      +++.||.||+.|+.++++|+.|+.|++  ..|++|+|+||+.+|.+|+.||+++.+++   |+      |  |       
T Consensus         2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~--~eG~~~~A~~f~~~a~eE~~HA~~~~~~l---~~------i--~-------   61 (123)
T cd01046           2 LEEDLEANFKGETTEVGMYLAMARVAQ--REGYPEVAEELKRIAMEEAEHAARFAELL---GK------V--S-------   61 (123)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHH---hc------C--c-------
Confidence            678999999999999999999999999  56999999999999999999999999966   22      1  1       


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       175 e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                        +|+.++|+.++.+|+.++..|.+++++|.+++|+.+.+||. +.++..-.|.+.+...+...
T Consensus        62 --~~~~~~le~a~~~E~~~~~~~~~~~~~A~~egd~~~~~~~~-~~~~~E~~H~~~~~~~l~~~  122 (123)
T cd01046          62 --EDTKENLEMMLEGEAGANEGKKDAATEAKAEGLDEAHDFFH-EAAKDEARHGKMLKGLLERY  122 (123)
T ss_pred             --ccHHHHHHHHHHhHHHHHHhHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence              36799999999999999999999999999999999999999 99999999999999888753

Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.

>PRK13456 DNA protection protein DPS; Provisional

Probab=99.68  E-value=3.1e-15  Score=129.87  Aligned_cols=141  Identities=17%  Similarity=0.216  Sum_probs=123.7

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC--C-CC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--Q-PP  168 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~--~-P~  168 (261)
                      .+++++.||+.+..|+.+.|.|..+++...  ++.-++++.||.+.+.||+.||+.|.++|.+.||.|.+.+-+  . ..
T Consensus        18 ~~~li~lLn~AlA~E~~a~~~Y~~~a~~~~--G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~   95 (186)
T PRK13456         18 VDKLVELLVKNAAAEFTTYYYYTILRAHLI--GLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISA   95 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhc
Confidence            468899999999999999999999999999  778999999999999999999999999999999999987663  0 00


Q ss_pred             CCC-Cccc-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          169 SEF-DHAE-KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       169 ~~f-~~~e-~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      ..+ .-++ ..|+.++++..|.-|+.++..|+++++.+. .+||.|++.++ .+|.++++|..+|.++|.
T Consensus        96 ~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~-~kDp~T~~l~~-~IL~dE~eH~~dl~~lL~  163 (186)
T PRK13456         96 CPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTA-GKDPRTYDLAL-AILQEEIEHEAWFSELLG  163 (186)
T ss_pred             CccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCccHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            111 0012 247999999999999999999999999998 67999999999 799999999999999986

>cd01043 DPS DPS protein, ferritin-like diiron-binding domain

Probab=99.35  E-value=3.2e-11  Score=99.09  Aligned_cols=129  Identities=20%  Similarity=0.161  Sum_probs=113.6

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------cCCCCC
Q 024844           98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQPPS  169 (261)
Q Consensus        98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I~~P~~  169 (261)
                      .||..+..++..+..|..+.-+..  +.++..++.+|.+.++++++|+..+.+++...||.|..+.        ++.++.
T Consensus         2 ~Ln~~lA~~~~~~~~~~~~HW~v~--G~~f~~lh~~l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~   79 (139)
T cd01043           2 ALNQLLADLYVLYLKLKNYHWNVK--GPNFFALHELFEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPA   79 (139)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCcc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCC
Confidence            589999999999999998777777  7899999999999999999999999999999999998764        554442


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      .+     .++.++++..+..|..+...+++.++.|.+.+|+.|.++++ .++.+..+++-.+..+
T Consensus        80 ~~-----~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~~t~~ll~-~il~~~ek~~w~l~a~  138 (139)
T cd01043          80 GV-----LSAKEMVAELLEDYETLIEELREAIELADEAGDPATADLLT-EIIRELEKQAWMLRAH  138 (139)
T ss_pred             CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence            22     35789999999999999999999999999999999999999 8999988888777654

DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=99.29  E-value=1.6e-10  Score=88.43  Aligned_cols=123  Identities=25%  Similarity=0.300  Sum_probs=106.3

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----cCCCCCCCC
Q 024844           98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----IMQPPSEFD  172 (261)
Q Consensus        98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-----I~~P~~~f~  172 (261)
                      .||..+..|+.+...|..++..++     .+++..+|...+.+|+.|++.+.+++..+||.+....     ...+..   
T Consensus         2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~---   73 (130)
T cd00657           2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPK---   73 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCC---
Confidence            689999999999999999999876     5789999999999999999999999999999987543     111111   


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                        ...+..+++..++..|......+..+.+.+.   |+.+.+++. +++.++..|.+.+..+
T Consensus        74 --~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~---d~~~~~~~~-~~~~~E~~H~~~~~~~  129 (130)
T cd00657          74 --TSDDPAEALRAALEVEARAIAAYRELIEQAD---DPELRRLLE-RILADEQRHAAWFRKL  129 (130)
T ss_pred             --CccCHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHH-HHHHHHHHHHHHHHhh
Confidence              2257889999999999999999998888764   999999999 9999999999988765

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=99.28  E-value=4e-10  Score=94.27  Aligned_cols=138  Identities=13%  Similarity=0.088  Sum_probs=113.4

Q ss_pred             CcHHHHHHHHHHhH---HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC
Q 024844           91 YEDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP  167 (261)
Q Consensus        91 ~s~~~e~aLNeQIn---~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P  167 (261)
                      -+++.-..|++|+.   .|+.+..+|+..+.-..  . +.+.+++.|...|.+|++|++.|.+++.++||.+.+......
T Consensus        10 ~~~~~~~~~~~~~~g~~~E~~ai~~Y~y~~~~~~--~-~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~   86 (154)
T cd07908          10 PNPRYAELLLDDYAGTNSELTAISQYIYQHLISE--E-KYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD   86 (154)
T ss_pred             CChHHHHHHHHHhCCcchHHHHHHHHHHHHHHcc--C-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc
Confidence            45677788999988   99999999999988776  3 679999999999999999999999999999999875432110


Q ss_pred             CC-CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          168 PS-EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       168 ~~-~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .. .|..   ....+..++++.++..|+.....|.++.+.   ..|+.+.+.|+ .++.++.+|++.|.+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~---~~d~~~r~ll~-~I~~eE~~H~~~L~~~l  154 (154)
T cd07908          87 KFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAET---IKDPYIRALLN-RIILDEKLHIKILEELL  154 (154)
T ss_pred             cCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence            00 0000   012478899999999999999999998884   58999999999 89999999999998753

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=98.92  E-value=1.3e-07  Score=80.51  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=110.6

Q ss_pred             cHHHHHHHHHHhH---HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           92 EDECEAAINEQIN---VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        92 s~~~e~aLNeQIn---~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++....+|.+|+.   -|+.+..+|+..+..++    ..+.+...|...+.||+.|++.|.+.+.+.||.+.-.+-.   
T Consensus        18 ~p~~A~~l~~~~gG~~gEl~ai~qYl~q~~~~~----~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~---   90 (156)
T cd01051          18 DPRFAKLLQEQLGGAFGELSAAMQYLFQSFNFR----EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWT---   90 (156)
T ss_pred             CHHHHHHHHHHhCCccHHHHHHHHHHHHHhhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCC---
Confidence            3444556666654   69999999999999994    3589999999999999999999999999999843321111   


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ..|.. ..+++...++..+..|+.....+.++++.+   +|+.+.+.|. +++.+.+.|...+...+..|
T Consensus        91 ~~yv~-~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---~Dp~v~~~l~-~I~~rE~~H~~~f~~~l~~~  155 (156)
T cd01051          91 AAYIQ-SSGNLVADLRSNIAAESRARLTYERLYEMT---DDPGVKDTLS-FLLVREIVHQNAFGKALESL  155 (156)
T ss_pred             CcccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            11211 136899999999999999999999999886   5999999999 89999999999999998875

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=98.92  E-value=3.1e-08  Score=78.83  Aligned_cols=129  Identities=24%  Similarity=0.242  Sum_probs=101.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeeeecccCCCCCCC---
Q 024844           97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG--GKVKLHSIMQPPSEF---  171 (261)
Q Consensus        97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG--G~v~l~~I~~P~~~f---  171 (261)
                      ++||..|..|..+...|..++..++.     +++..+|...+.+|+.|++.|...+..+|  +.|.+..-.......   
T Consensus         1 ~~l~~a~~~E~~~~~~Y~~~a~~~~~-----~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (139)
T cd01045           1 EILALAIKMEEEAAEFYLELAEKAKD-----PELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEP   75 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhh
Confidence            36899999999999999999998873     38999999999999999999999999997  333322110000000   


Q ss_pred             ----CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          172 ----DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       172 ----~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                          ......+..++++.++..|+.....+..+.+   ...|+.+.+.+. .++++..+|...+.++
T Consensus        76 ~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~---~~~d~~~~~~~~-~l~~~E~~H~~~l~~~  138 (139)
T cd01045          76 EFKKALESLMDPLEALRLAIEIEKDAIEFYEELAE---KAEDPEVKKLFE-ELAEEERGHLRLLEEL  138 (139)
T ss_pred             hHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence                0012257899999999999999988877775   457999999999 9999999999998764

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=98.77  E-value=2.8e-07  Score=73.48  Aligned_cols=129  Identities=23%  Similarity=0.281  Sum_probs=103.5

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC-------CCCC
Q 024844           97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM-------QPPS  169 (261)
Q Consensus        97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~-------~P~~  169 (261)
                      +.|+..|..|..+...|..++.-+..+  + |-+.+.|...|.+|..|+..|.+.+.++++.+......       .|..
T Consensus         1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~--~-p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   77 (137)
T PF02915_consen    1 EILEMAIKMELEAAKFYRELAEKAKDE--G-PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKL   77 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhc--c-cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchh
Confidence            468899999999999999999999954  6 88999999999999999999999999998765433111       1111


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      ....  ..++..+++.++..|+.....+..+   |....|+....+++ ++..+.-+|.+.+..+
T Consensus        78 ~~~~--~~~~~~~l~~a~~~E~~~~~~Y~~~---a~~~~~~~~~~~~~-~l~~~E~~H~~~l~~l  136 (137)
T PF02915_consen   78 EEET--DENLEEALEMAIKEEKDAYEFYAEL---ARKAPDPEIRKLFE-ELAKEEKEHEDLLEKL  136 (137)
T ss_dssp             CSSH--HHHHHHHHHHHHHHHHTHHHHHHHH---HHHTTSHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             hhhh--hHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence            1111  1257899999999998887777766   45678999999999 9999999999988764

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional

Probab=98.64  E-value=3.2e-06  Score=72.24  Aligned_cols=132  Identities=9%  Similarity=0.057  Sum_probs=111.1

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cc
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HS  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~  163 (261)
                      .+++.+.||..+..++.....|..+.-+-.  +..+..+..+|.+++.++++|+..+.+++...||.|.-        ..
T Consensus        20 ~~~~~~~Ln~~LA~~~~l~~k~~~~hW~v~--G~~f~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~   97 (162)
T PRK09448         20 KKATIELLNQQLAQFIDLSLITKQAHWNMK--GANFIAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTP   97 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhcc--CCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence            356889999999999999999998887777  67899999999999999999999999999999999862        33


Q ss_pred             cCC-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQ-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~-P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+. |...      -+..++++..++.-..+...++..+   .+++|+.|.+++. .++.+..+.+-.|+.++
T Consensus        98 i~e~~~~~------~~~~~~l~~l~~d~~~~~~~~r~~i---~e~~D~~T~dll~-~~~~~~eK~~WmL~a~l  160 (162)
T PRK09448         98 LKSYPLDI------HNVQDHLKALADRYAIVANDVRKAI---DEAGDEDTADIFT-AASRDLDKFLWFIEAHI  160 (162)
T ss_pred             CCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHH---hhcCChhHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            333 2222      2457899999998889999999888   7889999999999 89988888887777664

>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]

Probab=98.56  E-value=8e-06  Score=68.93  Aligned_cols=138  Identities=19%  Similarity=0.257  Sum_probs=108.9

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-----ecccC-
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK-----LHSIM-  165 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~-----l~~I~-  165 (261)
                      .+++++.|-+....|+.+.|-|...+....  +..=.|.-.|....-.|-+.|++.+..++-..||.+-     +..|. 
T Consensus        15 ~~kli~~Llka~AaE~tt~YYYtilr~~l~--Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dISg   92 (172)
T COG2406          15 KDKLIELLLKAAAAEWTTYYYYTILRYALK--GLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDISG   92 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhcC
Confidence            356788888889999999999999988766  3333444455555566667899999999999999863     33333 


Q ss_pred             --CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          166 --QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       166 --~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                        .|...   .+|.|+.+.++.+++.|+.....+.++..+ ...+|+.|.+.-+ .+|.|+++|..++..++.
T Consensus        93 C~~a~LP---edp~D~~~~l~vlv~AE~CAir~ykeic~~-T~GkDprTyeLa~-~IL~eEi~hr~~~~~ll~  160 (172)
T COG2406          93 CKPAYLP---EDPYDIDEILAVLVKAERCAIRAYKEICNL-TAGKDPRTYELAE-AILREEIEHRTWFLELLG  160 (172)
T ss_pred             CCCCCCC---CCccCHHHHHHHHHHHHHHHHHHHHHHHcc-ccCCCcchHHHHH-HHHHHHHHHHHHHHHHhc
Confidence              33221   234689999999999999999999999887 4679999999999 999999999999987664

>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]

Probab=98.27  E-value=9.5e-05  Score=63.14  Aligned_cols=133  Identities=18%  Similarity=0.151  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------eccc
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSI  164 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~~I  164 (261)
                      .++.+.||+++..=+......+...-+-.  +..+--+..+|.++.++-.+|...+.+++...||.|.        ...|
T Consensus        14 ~~~~~~Ln~~lAd~~~Ly~k~~~~HWnV~--G~~F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~i   91 (156)
T COG0783          14 KKIAEALNQLLADLYVLYLKTHNYHWNVK--GPNFFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSI   91 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccee--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCC
Confidence            67888999887765554444443332222  5677778999999999999999999999999999986        2334


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      +..+.+      .++.++++....--+.+.+.+++.+.+|.+.+|+.|.+++. ..+.+..+.+=.|+-+
T Consensus        92 ke~~~~------~~~~~~l~~l~~~~~~l~~~~r~~~~~a~e~gD~~Tadl~~-~~~~~~EK~~Wml~a~  154 (156)
T COG0783          92 KEEPGD------YTAREMLKELVEDYEYLIKELRKGIELADEAGDEVTADLLT-DIIRELEKTLWMLRAT  154 (156)
T ss_pred             cccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCChhHHHHHH-HHHHHHHHHHHHHHHh
Confidence            333322      46899999999999999999999999999999999999999 8888877766555443

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=98.25  E-value=1.2e-05  Score=65.22  Aligned_cols=121  Identities=16%  Similarity=0.119  Sum_probs=93.9

Q ss_pred             HHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc-c-c
Q 024844           98 AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH-A-E  175 (261)
Q Consensus        98 aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~-~-e  175 (261)
                      .+|+.++.|..+..+|..++.....     +...+.|...|++|++|++-+-+++..+|+.+.   .+....-+.. . .
T Consensus         2 ~~~~~~~~E~~~~~~Y~~la~~~~~-----~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~   73 (125)
T cd01044           2 RLRKFQKDEITEAAIYRKLAKREKD-----PENREILLKLAEDERRHAEFWKKFLGKRGVPPP---RPKLKIFFYKLLAR   73 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---CccHHHHHHHHHHH
Confidence            4789999999999999999998763     458999999999999999999999999998875   1100000000 0 0


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       176 ~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      ..++..+++.+...|+.....|.++...         ...+. ..+.|+.+|++.|.++++
T Consensus        74 ~~g~~~~l~~~~~~E~~ai~~Y~~~~~~---------~~~~~-~Ii~dE~~H~~~L~~~~~  124 (125)
T cd01044          74 IFGPTFVLKLLERGEERAIEKYDRLLEE---------RPELK-EIIADELEHEEVLIALLD  124 (125)
T ss_pred             HHhHHHHHHHHHHhHHhhHhhHHhhhhh---------hHHHH-HHHHHHHHHHHHHHHhhh
Confidence            1234578888889999999999988776         44666 789999999999988764

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>COG1633 Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00021  Score=61.98  Aligned_cols=139  Identities=18%  Similarity=0.179  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec---------c
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH---------S  163 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~---------~  163 (261)
                      ..++.+|+..|..|..|...|..++..++..     -+.+.|...+.+|+.|..+|-+.+-+++++..-.         .
T Consensus        23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~~~~-----~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~   97 (176)
T COG1633          23 LSIEELLAIAIRGELEAIKFYEELAERIEDE-----EIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESE   97 (176)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhh
Confidence            4678999999999999999999999999964     5899999999999999999999999999887211         0


Q ss_pred             cCCCCCC---CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          164 IMQPPSE---FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       164 I~~P~~~---f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      +-.+...   +...  .+..++++.|...|+...+-|..+...   ..|.....++. +++++.-.|...+...++.+.+
T Consensus        98 ~~~~~~~~~~~~~~--~~~~~~I~~a~~~E~~t~~~Y~~~~~~---~~~~~~~~~~~-~~a~~E~~H~~~l~~~~~~~~~  171 (176)
T COG1633          98 ILEYLQPGKEMEKS--VSYLEAIEAAMEAEKDTIEFYEELLDE---LVNEEAKKLFK-TIADDEKGHASGLLSLYNRLTS  171 (176)
T ss_pred             hccccCcccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHH---ccCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence            1111111   1111  478999999999999999999888764   46777888888 8999999999999888888776


Q ss_pred             cc
Q 024844          241 VG  242 (261)
Q Consensus       241 ~g  242 (261)
                      .+
T Consensus       172 ~~  173 (176)
T COG1633         172 TG  173 (176)
T ss_pred             cc
Confidence            54

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.88  E-value=0.00049  Score=73.68  Aligned_cols=138  Identities=12%  Similarity=0.090  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC-
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF-  171 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f-  171 (261)
                      +...+.|--.|.+|-..--.|..++.-..     =+.+.++|...|++|++|.+.|.+...+--.. .-.....+...+ 
T Consensus       859 ~~~~eil~~Ai~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~-~~~~~~~~~~~~~  932 (1006)
T PRK12775        859 AAALEAIRTAFEIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPS-PTEGFKIERAAIM  932 (1006)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-cccccccchhhhh
Confidence            55678999999999999999999999655     46899999999999999999998776431000 000000000000 


Q ss_pred             Cc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChh-HHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          172 DH--AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ-MAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       172 ~~--~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~-t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      ..  ..+.++.++++.|+..|+...+-|.++.+.   ..|.. ...+++ .+.+|+-+|++.|.++++.++.
T Consensus       933 ~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~---~~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~~~~ 1000 (1006)
T PRK12775        933 AGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAE---TPDGSVERQLYK-ELAAEEREHVALLTTEFERWKQ 1000 (1006)
T ss_pred             hhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhh---CCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence            00  112468999999999999999998887664   56775 689999 9999999999999999999986

>PF13668 Ferritin_2: Ferritin-like domain

Probab=97.84  E-value=0.002  Score=52.57  Aligned_cols=131  Identities=18%  Similarity=0.241  Sum_probs=104.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcccC---CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           96 EAAINEQINVEYNVSYVYHALYAYFDRD---NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd---~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      .+.||-.++.|+...-.|..-..-+..+   ..-=+....+|+.....|+.|...|-+.+.  |+++.    +.|..+|.
T Consensus         3 ~~iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~--g~~~~----~~~~~~~~   76 (137)
T PF13668_consen    3 LDILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALE--GGRPV----PPPAYDFP   76 (137)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC----CCCccccc
Confidence            3679999999999999999988854211   123345778999999999999999998887  76663    45555553


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .+.+.+....+..|+..|......|..+...   ..|+.+...+. .++..+.+|..+++.++.
T Consensus        77 ~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~---~~~~~~~~~~~-~i~~~Ea~H~~~ir~ll~  136 (137)
T PF13668_consen   77 FDPFTDDASFLRLAYTLEDVGVSAYKGAAPQ---IEDPELKALAA-SIAGVEARHAAWIRNLLG  136 (137)
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            3455789999999999999999999888775   46899999998 899999999999988764

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=97.73  E-value=0.0014  Score=56.49  Aligned_cols=125  Identities=14%  Similarity=0.129  Sum_probs=104.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA  174 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~  174 (261)
                      .++-|-+...-|-.+-..|+.||...++.  |++.+|+.|+..|.+|..||..+.+-+.+.+         .+       
T Consensus         5 t~~~L~~aF~GEs~a~~rY~~~A~~A~~e--G~~~va~lfr~iA~~E~~HA~~~~~~l~~~~---------~~-------   66 (166)
T COG1592           5 TEENLRKAFAGESMAVMRYLIFAKVAEEE--GYPEIARLFRAIAEAEAVHAKNHLKLLGKLL---------LV-------   66 (166)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------cc-------
Confidence            45566667777889999999999999965  9999999999999999999999998887765         01       


Q ss_pred             ccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          175 EKGDALYAMELALSLEKLTNEK-LLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       175 e~~d~lea~e~AL~lEk~vt~~-l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                       ++|..+-++.++.-|..-... +......|...++-....++. +.....-.|.+.+...++.++
T Consensus        67 -~~~~~eNl~~aieGE~~e~~emyp~~ae~A~~~g~~~~a~~f~-~~~~~Ek~H~~~~~~~Le~~~  130 (166)
T COG1592          67 -LGDTRENLEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFR-AAAKAEKRHAEMFRGLLERLE  130 (166)
T ss_pred             -cccHHHHHHHHHccchHHHHHhChHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Confidence             256788888888888765555 448888999999888898999 888888899999999888884

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=97.18  E-value=0.014  Score=50.33  Aligned_cols=122  Identities=17%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc---cccCCHHH
Q 024844          105 VEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH---AEKGDALY  181 (261)
Q Consensus       105 ~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~---~e~~d~le  181 (261)
                      -|+.|-.+|..-...+..     +.+..++.+.+.+|..|-..|-+.+..+|++|.+-.-.-....|--   .......-
T Consensus        11 GE~gA~~IY~gQ~~~~~~-----~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~   85 (165)
T cd01042          11 GEVGAVRIYRGQLAVARD-----PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKA   85 (165)
T ss_pred             chHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHH
Confidence            489999999999998872     8999999999999999999999999999999975321100011100   00011245


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHH
Q 024844          182 AMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIA  232 (261)
Q Consensus       182 a~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~  232 (261)
                      +|-..-+.|..|...|++-.+.=....|..+.+.|+ .|.+|+++|-+.-.
T Consensus        86 a~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~-~~r~DE~~H~d~A~  135 (165)
T cd01042          86 AMACTAAVETVVEEHYNDQLRELPAQPDKELRAIIE-QFRDDELEHADIAE  135 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence            677888999999999988777544445999999999 99999999887654

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>TIGR02284 conserved hypothetical protein

Probab=96.53  E-value=0.064  Score=44.65  Aligned_cols=124  Identities=13%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC---------
Q 024844           96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ---------  166 (261)
Q Consensus        96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~---------  166 (261)
                      +..||+.|...+.+-.-|-..+...+     -|.+..+|...+.+-..|+..|-.++...||.|.-..-.+         
T Consensus         2 i~~Ln~Lie~~~D~~~gY~~aae~v~-----~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~   76 (139)
T TIGR02284         2 IHSLNDLIEISIDGKDGFEESAEEVK-----DPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGK   76 (139)
T ss_pred             hHHHHHHHHHcccHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence            57899999999999999999998665     4689999999999999999999999999999886321111         


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      ...-|..   ++-..+++.+..-|..+.+.|.+..+-.  .-++.+...|+     .|...++.--+.
T Consensus        77 lks~~~~---~~d~aiL~~~e~gEd~~~~~y~~aL~~~--~l~~~~r~~l~-----~q~~~i~~~~d~  134 (139)
T TIGR02284        77 IRATLTP---NDDYVVLEEAERGEDRAKKAYDETLADQ--DTPAAARDVAL-----RQYPGVRACHDV  134 (139)
T ss_pred             HHHHHcC---CChHHHHHHHHHhHHHHHHHHHHHHhcC--CCChHHHHHHH-----HHHHHHHHHHHH
Confidence            0011111   2345678888888988888888776531  35777776666     455444443333

Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.

>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain

Probab=96.46  E-value=0.3  Score=45.83  Aligned_cols=149  Identities=17%  Similarity=0.247  Sum_probs=109.5

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHH-HhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC-
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHAL-YAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP-  167 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~Ylsm-Aa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P-  167 (261)
                      .+++....+|---.-.| ...=.|+.+ ..+|..++..-+++++|......||-.|+.-|-+|+..- |++....+..- 
T Consensus        55 ~L~~~~~~~l~~~~itE-d~LP~Y~~~L~~~f~~~~~~~~~w~~w~~~WtaEE~rHg~aL~~YL~~s-g~vdp~~le~~~  132 (297)
T cd01050          55 ELPDDARVALVGNLLTE-EALPTYHSMLNRLFGLDDESPTAWARWVRRWTAEENRHGDLLNKYLYLT-GRVDPRALERTR  132 (297)
T ss_pred             cCCHHHHHHHHHHHHHh-hccHHHHHHHHHHcCcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence            47777776666555556 333444443 444543322447899999999999999999999999885 55554443311 


Q ss_pred             ----CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          168 ----PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       168 ----~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                          ...|+.....++...|-...-.|+.....++++.+.|. .+||.+...+. ..-.++..|.+-..+++..+-...
T Consensus       133 ~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~-~gdPvL~~i~~-~IA~DE~rH~~fy~~~v~~~le~d  209 (297)
T cd01050         133 QYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG-AGDPVLAKLLG-RIAADEARHEAFYRDIVEALFELD  209 (297)
T ss_pred             HHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence                12233222235668888888899999999999999988 89999999999 999999999999999999876553

Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1

>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=96.05  E-value=0.48  Score=39.07  Aligned_cols=121  Identities=19%  Similarity=0.188  Sum_probs=87.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC----
Q 024844           97 AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD----  172 (261)
Q Consensus        97 ~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~----  172 (261)
                      +.|.-.+..|..+--+|..++.-|.        .-.-|...+..|.+|...+...+.+.|.....  .+.+...|.    
T Consensus         3 ~~L~~Ale~Ek~a~~~Y~~~~~k~~--------~~~~F~~la~~E~~H~~~l~~L~~~~~~~~p~--~~~~~~~f~~~~~   72 (135)
T cd01048           3 AALLYALEEEKLARDVYLALYEKFG--------GLRPFSNIAESEQRHMDALKTLLERYGLPDPV--DPFSGGVFTNPQY   72 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--------CcchHHHHHHHHHHHHHHHHHHHHHcCCCCCC--CccccccccchhH
Confidence            5677788999999999999998773        45678888999999999998888877744211  111111111    


Q ss_pred             ----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHH
Q 024844          173 ----HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKI  231 (261)
Q Consensus       173 ----~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l  231 (261)
                          .....+..++++.+...|+....-|.++.+   ...|+.+...++ ....+.-+|..-+
T Consensus        73 ~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~---~~~d~d~k~v~~-~L~~~e~~H~~~f  131 (135)
T cd01048          73 NQLVEQGPKSLQDALEVGVLIEELDIADYDRLLE---RTQNPDIRDVFE-NLQAASRNHHLPF  131 (135)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHH---hcccHHHHHHHH-HHHHHHHHHHHHH
Confidence                011246789999999999888777777665   456788888888 7777766665543

Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=96.05  E-value=0.17  Score=43.87  Aligned_cols=123  Identities=20%  Similarity=0.224  Sum_probs=94.1

Q ss_pred             hHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC---CCCc---ccc
Q 024844          103 INVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS---EFDH---AEK  176 (261)
Q Consensus       103 In~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~---~f~~---~e~  176 (261)
                      -.-|+.|-.+|..-...+..    .|.+..++++..++|.+|-..|-+.+.++|.+|.+-   .|.-   .|--   .-.
T Consensus        11 HAGE~~A~~iY~gQ~~~~~~----~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l---~Plw~~~g~~LG~~tal   83 (172)
T PF03232_consen   11 HAGEVGAVRIYRGQLAVARR----DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLL---NPLWYVAGFALGALTAL   83 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHH---HHHHHHHHHHHHHHHHh
Confidence            35699999999999998873    688999999999999999999999999999998743   1210   0000   000


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCChhHHHHhHHhhHHHHHHHHHHHHH
Q 024844          177 GDALYAMELALSLEKLTNEKLLSLHSVAD---RNNDPQMAEFVESEFLGEQVEAINKIAK  233 (261)
Q Consensus       177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~---~~~D~~t~~FLe~~FL~EQve~ik~l~~  233 (261)
                      ....-+|-..-+.|..+.+.|++-++.-.   ...|..+.+.|+ .|-+|+.+|-+.-.+
T Consensus        84 ~G~~~~~a~t~avE~~V~~Hy~~Ql~~L~~~~~~~d~~l~~~i~-~~r~DE~~H~d~A~~  142 (172)
T PF03232_consen   84 LGDKAAMACTAAVETVVEEHYNDQLRELPAMGEEEDPELRAIIE-QFRDDELEHRDTAIE  142 (172)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            11245666777889999999988777555   378999999999 999999999876543

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids

Probab=96.05  E-value=0.62  Score=44.42  Aligned_cols=149  Identities=17%  Similarity=0.248  Sum_probs=101.6

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHH-HHhhccc---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHA-LYAYFDR---DNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM  165 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~Yls-mAa~Fdr---d~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~  165 (261)
                      .+++....+|---+-.|=+.-- |+. ++.+|..   ++....+.++|.....-||-.|+.-|-+|+.-.| .|....+.
T Consensus        57 ~Lpd~~~~alv~~llTEd~LPs-Y~~~l~~~~~~~~~~ga~~~~W~~wv~~WTAEEnRHg~~L~~YL~vsg-~vDp~~lE  134 (330)
T PF03405_consen   57 TLPDDARVALVGNLLTEDNLPS-YHRELATLFGVRDEDGASDSPWGRWVGRWTAEENRHGDALRDYLYVSG-RVDPVALE  134 (330)
T ss_dssp             TS-HHHHHHHHHHHHHHHTHHH-HHHHHTTSTTT--SSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHCT-SS-CCCCC
T ss_pred             cCCHHHHHHHHHHHHhhhhhhH-HHHHHHhhcCccccCCCCCCcHHHHcccccccccccHHHHHHHHHHhC-CCCHHHHH
Confidence            4777776655444444444332 333 3444442   2112456899999999999999999999997755 55544444


Q ss_pred             CCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          166 QPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       166 ~P~-----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      .-.     ..|+.....++...|-...-.|+.+.-+..++.++|.+.+|+.+...+. ..-.++..|..-..+++..+=.
T Consensus       135 ~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~~~~DpvL~~il~-~IA~DE~rH~~fy~~iv~~~l~  213 (330)
T PF03405_consen  135 RTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAKQAGDPVLAQILG-RIAADEARHEAFYRNIVEAYLE  213 (330)
T ss_dssp             HCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH-HHHhhHHHHHHHHHHHHHHHHh
Confidence            321     1243222246788999999999999999999999999999999998888 8888888888888877776544


Q ss_pred             c
Q 024844          241 V  241 (261)
Q Consensus       241 ~  241 (261)
                      +
T Consensus       214 ~  214 (330)
T PF03405_consen  214 L  214 (330)
T ss_dssp             H
T ss_pred             h
Confidence            3

There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.

>PF09537 DUF2383: Domain of unknown function (DUF2383); InterPro: IPR019052 This entry represents a functionally uncharacterised ferritin like domain

Probab=95.25  E-value=0.17  Score=39.81  Aligned_cols=63  Identities=21%  Similarity=0.208  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL  161 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l  161 (261)
                      +.+..||+.|.....+...|-..+.-++.     +.+..+|.+.+.+...|+..|-.++...||.|.-
T Consensus         1 ~~i~~Ln~Ll~~~~d~~~~Y~~a~~~~~~-----~~lk~~f~~~~~~~~~~~~~L~~~i~~~Gg~p~~   63 (111)
T PF09537_consen    1 ETIEALNDLLKGLHDGIEGYEKAAEKAED-----PELKSLFQEFAQERQQHAEELQAEIQELGGEPEE   63 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--S-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--H--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence            46789999999999999999999998882     6899999999999999999999999999999864

; PDB: 3FSE_B.

>PF05974 DUF892: Domain of unknown function (DUF892); InterPro: IPR010287 This domain is found in several hypothetical bacterial proteins of unknown function

Probab=93.15  E-value=4.7  Score=34.09  Aligned_cols=138  Identities=17%  Similarity=0.139  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC------
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ------  166 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~------  166 (261)
                      +-....|.+....|-.+.-.+-.|+.-..     -|.+..-|..+..+-+.|..+|-+-+...|+.|.-...+.      
T Consensus         4 ~~~~~~L~d~y~aE~q~~~~l~~~~~~a~-----~~~L~~~l~~h~~eT~~q~~rLe~~~~~lg~~p~~~~c~~~~gl~~   78 (159)
T PF05974_consen    4 DLFIDELRDLYSAEKQLLKALPKLAEAAS-----SPELKAALEEHLEETEQQIERLEQIFEALGADPSAEKCDAMEGLVA   78 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-CHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCcchHHHHHHH
Confidence            44577888999999999999999998666     2889999999999999999999999999999886322110      


Q ss_pred             ----CCCCCCccccCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          167 ----PPSEFDHAEKGDALYA--MELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       167 ----P~~~f~~~e~~d~lea--~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                          -...+..+  +.+.++  +-.+...|..=+..|..|..+|..-++....+.|+ .-|+|..+.-.+|..+...+
T Consensus        79 e~~~~~~~~~~d--~~~~D~~li~a~q~~ehyeIA~Y~tL~~~A~~lG~~e~a~lL~-~~L~EE~~~~~~L~~~a~~~  153 (159)
T PF05974_consen   79 EAQELIEEFAED--PAVKDAALIAAAQKVEHYEIAAYGTLIALAKQLGDEEAAQLLE-QNLDEEEAADEKLTQLAESI  153 (159)
T ss_dssp             HHHHHHHT-S-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHH-HHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhcccCC--chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence                00000000  123333  35678889999999999999999999999999999 88888888888887776543

; PDB: 4ERU_B 3OGH_A 2GS4_B 2GYQ_B 3HIU_A.

>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain

Probab=92.75  E-value=6.4  Score=34.54  Aligned_cols=139  Identities=14%  Similarity=0.182  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC---
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE---  170 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~---  170 (261)
                      +....|-++.+.|..|+.+=++|=..|-    ..+++..-+-..+.||+.|=+++++-+.+||  +.+.++.+++-.   
T Consensus        18 nl~~iL~DHA~CE~KAA~~A~~L~~rY~----~~~~Lv~~m~~LarEEL~HFeqV~~im~~Rg--i~l~~~~~~~Ya~~L   91 (180)
T cd07910          18 NLDEILIDHAHCEKKAASSAMSLIFRYP----EKPELVEAMSDLAREELQHFEQVLKIMKKRG--IPLGPDSKDPYASGL   91 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC----CcHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCHHHHHH
Confidence            5667888999999999998888755554    3578999999999999999999999999999  455555555310   


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      ....-++.+...+..-|--=--=..+-.....+|....|..+..|-. .++..+..|-   .+++.--+..+
T Consensus        92 ~k~vR~~~p~~llD~Llv~alIEARScERF~lLa~~l~D~eL~~FY~-~Ll~SEarHy---~~yl~LA~~y~  159 (180)
T cd07910          92 RKLVRKGEPERLLDRLLVAALIEARSCERFALLAPALPDPELKKFYR-GLLESEARHY---ELFLDLARKYF  159 (180)
T ss_pred             HHHcccCChHHHHHHHHHHHHHHHHhHHHHHHHhccCCCHHHHHHHH-HHHHHHhhHH---HHHHHHHHHHc
Confidence            00001112222221111100000111123444555568999999988 6776655554   45555555544

MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=92.67  E-value=5.8  Score=35.18  Aligned_cols=145  Identities=17%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             CCCCccchhcccCcHHHHHHHHHHh----HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           79 PVSPLLSLARQKYEDECEAAINEQI----NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        79 ~~~~~~s~aRq~~s~~~e~aLNeQI----n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      |+.|..+..|..+|+.--.-+-.-|    .-|+.|-++|.--+++....   -+..  -.++.+++|-.|--.+-+++.+
T Consensus        22 ~~~~~~a~~rpdlS~~d~~~~~~iiRVnhaGE~~A~~iY~GQ~~~~r~~---~~R~--~l~em~d~E~~HL~~f~~~l~e   96 (204)
T COG2941          22 PTRPRPAMPRPDLSDADKRILAGIIRVNHAGELGAQAIYQGQAAVARSP---EPRI--QLKEMADEEIDHLAWFEQRLLE   96 (204)
T ss_pred             CCCCCCCCCCCCcCcHHHHHHHHhhhccchhHHHHHHHHhhHHHHHcCc---chHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555556656655443333332    35999999999999888854   2223  8899999999999999999999


Q ss_pred             cCCeeeecccCCCCCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHH
Q 024844          155 RGGKVKLHSIMQPPSEFDH----AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK  230 (261)
Q Consensus       155 RGG~v~l~~I~~P~~~f~~----~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~  230 (261)
                      ||-+|.+-.----...|--    .--| ..-+|-..-+.|..+-..|..=... ..+.|..+...|. .|=+++++|.+.
T Consensus        97 ~~vRPsll~P~W~~~~FalGA~a~Llg-dk~am~~teavE~vIe~Hy~~ql~~-L~~~d~~lr~~l~-qfR~DE~eH~d~  173 (204)
T COG2941          97 LGVRPSLLNPLWYAAAFALGAGAGLLG-DKAAMGFTEAVETVIEKHYDGQLRE-LPNLDAELRAILA-QFRDDELEHLDN  173 (204)
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHH-HHhhHHHHHHHH
Confidence            9999875321100000000    0001 1233444445555555555443332 2348889999999 999999988776


Q ss_pred             H
Q 024844          231 I  231 (261)
Q Consensus       231 l  231 (261)
                      .
T Consensus       174 A  174 (204)
T COG2941         174 A  174 (204)
T ss_pred             H
Confidence            4

>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins

Probab=91.58  E-value=5.7  Score=36.50  Aligned_cols=143  Identities=15%  Similarity=0.128  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      +.-...|..-.+.|++|...++-...-|.+ +.-. .|-.=|.+.+.||-.|-..+.+++...|.  .+.+++...-=|+
T Consensus        65 ~~r~~llHaiAhIE~~AIdLa~Da~~RF~~-~lP~-~f~~D~~~va~dEarHf~ll~~rL~~lG~--~yGd~P~h~gLw~  140 (253)
T PF04305_consen   65 EGRAALLHAIAHIELNAIDLALDAIYRFHP-NLPR-EFYDDWLRVADDEARHFRLLRERLEELGS--DYGDLPAHDGLWE  140 (253)
T ss_pred             hhHHHHHHHhcchHHHHHHHHHHHHHHHhc-cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCcchhhHHHH
Confidence            344678888889999999999999999922 3333 34444556799999999999999999994  4555554432222


Q ss_pred             ccccC--CHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          173 HAEKG--DALYAMEL-ALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       173 ~~e~~--d~lea~e~-AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      .....  |++.=|-. -+.+|-.--+.--.+.+.-...+|..+...|+ -.+.|+|.|++.=...+..+..
T Consensus       141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~  210 (253)
T PF04305_consen  141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCE  210 (253)
T ss_pred             HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHH
Confidence            11110  12211111 12334333333334444456789999999999 9999999999766666666554

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=89.76  E-value=1.9  Score=33.79  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ++++.|+..|......|..+...+...+ |.+..++. .+-.+..+|.+.+..++..+
T Consensus         1 e~L~~A~~~E~~~~~~Y~~~a~~~~~~~-p~~~~~f~-~lA~~E~~H~~~~~~l~~~~   56 (137)
T PF02915_consen    1 EILEMAIKMELEAAKFYRELAEKAKDEG-PELKELFR-RLAEEEQEHAKFLEKLLRKL   56 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH-HHHHHHHHHHHHHHHHHCHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhcc-cHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Confidence            4788999999999999999999999888 99999999 99999999999999888776

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>COG1633 Uncharacterized conserved protein [Function unknown]

Probab=88.97  E-value=2.8  Score=36.41  Aligned_cols=60  Identities=15%  Similarity=0.159  Sum_probs=54.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      ..+.+++..|+..|+....-|.++++.+   .|..+...++ ++..+..+|.+++..++.++..
T Consensus        23 ~~~~e~L~~Ai~~E~eA~~fY~~lae~~---~~~~~rk~~~-~la~eE~~H~~~f~~l~~~~~~   82 (176)
T COG1633          23 LSIEELLAIAIRGELEAIKFYEELAERI---EDEEIRKLFE-DLADEEMRHLRKFEKLLEKLTP   82 (176)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHhHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence            3678999999999999999999998865   6778999999 9999999999999999998854

>PF05067 Mn_catalase: Manganese containing catalase; InterPro: IPR007760 Catalases (1

Probab=88.12  E-value=7  Score=36.61  Aligned_cols=144  Identities=13%  Similarity=0.144  Sum_probs=98.6

Q ss_pred             CcHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-----
Q 024844           91 YEDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-----  162 (261)
Q Consensus        91 ~s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-----  162 (261)
                      -++....+|-+|+   .-|+.++.+|+.-+.-|...  .  .+...+..-+-||..|.|.+-.-|++.-......     
T Consensus        17 PDP~~A~~LqeqlGG~~GElsaamqYl~Q~~~~~~~--~--~~kdlL~dIatEEl~H~Emvat~I~~Ll~g~~~~~~~~~   92 (283)
T PF05067_consen   17 PDPRFAKLLQEQLGGPFGELSAAMQYLFQSFNMRGP--E--KYKDLLMDIATEELGHVEMVATMIAQLLKGAPPEEQEEA   92 (283)
T ss_dssp             --HHHHHHHCHHHHSTTSHHHHHHHHHHHHHH-SST--T--TTHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSSHHHH
T ss_pred             CCHHHHHHHHHHhcCCcchHHHHHHHHHHhhcCCCc--h--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhh
Confidence            3455666777777   46999999999999999843  2  2358899999999999999877766654322111     


Q ss_pred             --------c----------cC-----CCC----CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhH
Q 024844          163 --------S----------IM-----QPP----SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM  212 (261)
Q Consensus       163 --------~----------I~-----~P~----~~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t  212 (261)
                              .          |.     .|.    .-|..   ...||+.--|...+..|......+..|++..   .|+..
T Consensus        93 ~~~~p~~~~~~~~~n~~h~i~~g~g~~p~ds~G~PWt~~yv~~sGdl~aDL~~NiaAE~~AR~~yerL~~mT---dDpgv  169 (283)
T PF05067_consen   93 APGDPLLAAIMGGGNPQHYIVHGGGAYPVDSNGVPWTAAYVQASGDLIADLRSNIAAEQRARLQYERLYEMT---DDPGV  169 (283)
T ss_dssp             HGGGTTTGGGGCSS-SHHHHTSSSS--SB-TTS-B-BGGG----S-HHHHHHHHHHHHHHHHHHHHHHHTT------HHH
T ss_pred             cccchHHHHhhcCCCchhhhcCCCCCCccCCCCCcccchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence                    0          11     010    01221   1347899999999999999999999888764   89999


Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          213 AEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       213 ~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .+.|. ..+.-.+-|...+..-|..|....
T Consensus       170 kd~L~-FLl~Re~vH~~~f~~ALe~l~~~~  198 (283)
T PF05067_consen  170 KDMLS-FLLAREIVHQQQFGKALEELQENF  198 (283)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999 777778888888888887776543

11.1.6 from EC) are antioxidant enzymes that catalyse the conversion of hydrogen peroxide to water and molecular oxygen. Hydrogen peroxide is produced as a consequence of oxidative cellular metabolism and can be converted to the highly reactive hydroxyl radical via transition metals, this radical being able to damage a wide variety of molecules within a cell, leading to oxidative stress and cell death. Catalases act to neutralise hydrogen peroxide toxicity, and are produced by all aerobic organisms ranging from bacteria to man. There are three structurally independent classes of catalases: ubiquitous mono-functional haem-containing catalases (IPR002226 from INTERPRO), bifunctional haem-containing catalase-peroxidases that are closely related to plant peroxidases (IPR000763 from INTERPRO), and non-haem manganese-containing catalases []. This entry represents the non-haem Mn-catalases, which are found in several bacterial species []. The structure of the Mn catalase from Lactobacillus plantarum reveals a homo-hexamer, where each subunit contains a dimanganese active site that is accessed by a single substrate channel []. The dimanganese active site performs a two-electron catalytic cycle that alternately oxidises and reduces the dimanganese atoms in a manner that is similar to its haem-counterpart found in other catalases.; PDB: 1JKV_D 1JKU_D 1O9I_E 2CWL_A 2V8T_B 2V8U_A.

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain

Probab=87.39  E-value=5.1  Score=32.49  Aligned_cols=61  Identities=16%  Similarity=0.115  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ...+.+...+..|......+...|..+...+.+.+..+++ ..-.+..++++.+.+.+..|.
T Consensus         6 ~~~~~Ln~~la~e~~~~~~y~~~~~~~~g~~f~~l~~~~~-~~~~ee~~Had~laEri~~lG   66 (148)
T cd01052           6 ELIELLNKAFADEWLAYYYYTILAKHVKGPEGEGIKEELE-EAAEEELNHAELLAERIYELG   66 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence            4678899999999999999999999999999999999999 888899999999999888874

DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical

>COG3546 Mn-containing catalase [Inorganic ion transport and metabolism]

Probab=87.18  E-value=15  Score=34.25  Aligned_cols=143  Identities=14%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             CcHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee-----c
Q 024844           91 YEDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL-----H  162 (261)
Q Consensus        91 ~s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l-----~  162 (261)
                      -++...++|.+|+   .-|+.++.+|+.-+.-|.    + +++-..+..-+.||..|-+.+-.-++..-.....     .
T Consensus        17 pdp~~A~~lqEqlGG~~GElsaamqYl~Q~fn~r----~-~~~~dll~DI~TEEl~HlEmvat~I~~L~~ga~~e~~~~~   91 (277)
T COG3546          17 PNPQLAKLLQEQLGGAFGELSAAMQYLFQGFNVR----D-AKYKDLLMDIGTEELSHLEMVATMINLLNKGATGEGAEEA   91 (277)
T ss_pred             CChHHHHHHHHHhCCcchHHHHHHHHHHhhcccC----c-hHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcch
Confidence            3556677888887   479999999999888777    2 6788899999999999999998887776544433     1


Q ss_pred             ccC------------------CCCCC-----CCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHh
Q 024844          163 SIM------------------QPPSE-----FDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV  216 (261)
Q Consensus       163 ~I~------------------~P~~~-----f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FL  216 (261)
                      ++.                  .|+.+     |.-   ...|+++-=|...+..|......+..|+++   ..|+...+.|
T Consensus        92 ~l~~s~~~~~n~~h~~~~~~g~~p~dS~G~pWta~YI~~sGnliaDlr~NiaaE~~aR~~y~rLy~m---tdDpgvrd~L  168 (277)
T COG3546          92 ELYGSGLGGMNPHHISVLLYGAGPADSAGVPWTAAYIVASGNLIADLRSNIAAEARARLQYERLYEM---TDDPGVRDTL  168 (277)
T ss_pred             hhHHhhccCCCchhhhhhccCCCCcccCCCccchhhhhccCccHHHHHHHHHHHhccceeeeeeeec---CCCccHHHHH
Confidence            000                  01110     110   134677777788888888777777777776   4899999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          217 ESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       217 e~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      . ..|.-.+-|...+..-|..|+..+
T Consensus       169 ~-fLl~Re~~H~~~f~kAL~~l~~~~  193 (277)
T COG3546         169 S-FLLTREIAHQNAFRKALESLENEE  193 (277)
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9 777778888888888888887766

>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A

Probab=86.70  E-value=3.7  Score=37.06  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=45.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec
Q 024844           99 INEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH  162 (261)
Q Consensus        99 LNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~  162 (261)
                      |...|.+|+...-.||..++--+.  -.-.....-.+.-+.|||-|.....+-+|-.||.|.+.
T Consensus         1 Lq~Ai~lE~atip~YL~a~ySi~~--~~~~~~~~~i~~V~~eEMlHl~l~~Nll~alGg~P~l~   62 (227)
T PF12902_consen    1 LQQAIELELATIPPYLTALYSIKP--GTNEEARNLIRSVAIEEMLHLSLAANLLNALGGSPRLT   62 (227)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             CcHHHHHHHHHHHHHHHHHcccCC--CcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccc
Confidence            567889999999999977666642  22333888999999999999999999999999999886

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=86.68  E-value=3.8  Score=31.93  Aligned_cols=55  Identities=24%  Similarity=0.376  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      +++..|+.+|+.....|..+...   .+|+....+++ .+-.++.+|.+.+...+..+.
T Consensus         1 ~~l~~a~~~E~~~~~~Y~~~a~~---~~~~~~~~~~~-~la~eE~~H~~~l~~~~~~~~   55 (139)
T cd01045           1 EILALAIKMEEEAAEFYLELAEK---AKDPELKKLFE-ELAEEEKEHAERLEELYEKLF   55 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhH---CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            36788999999999999988665   47779999999 999999999999999999885

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain

Probab=86.33  E-value=5.8  Score=32.33  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=54.6

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ...+.+..++.+|-.....|...+..+...+-+.+.++++ ..-.|..+|.+.+.+.+..+-
T Consensus         5 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~~a~ee~~Ha~~lae~i~~lG   65 (153)
T cd00907           5 KVIEALNKALTGELTAINQYFLHARMLEDWGLEKLAERFR-KESIEEMKHADKLIERILFLE   65 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence            4678999999999999999999999998889999999999 788888899999998888764

Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best

>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []

Probab=85.75  E-value=5.6  Score=31.23  Aligned_cols=58  Identities=26%  Similarity=0.336  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      +.+...+..|......+..++-.+...+-+.+..|++ ...++..++..++.+++..+-
T Consensus         2 ~~Ln~~l~~e~~~~~~y~~~~~~~~~~~~~~l~~~~~-~~a~e~~~h~~~l~e~i~~lg   59 (142)
T PF00210_consen    2 EALNEQLALELQASQQYLNMHWNFDGPNFPGLAKFFQ-DQAEEEREHADELAERILMLG   59 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHhH-HHHHHHHHHHHHHHHHHhcCC
Confidence            5788899999999999999999999888899999999 788888888888888777653

It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....

>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain

Probab=84.81  E-value=6.8  Score=31.57  Aligned_cols=59  Identities=20%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       179 ~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ..+.+..++..|......|.....+|..++.+.+.+++. ....+...|-+.+.+++..+
T Consensus         2 ~~~~L~~a~~~E~~a~~~Y~~~a~~a~~eG~~~~A~~f~-~~a~eE~~HA~~~~~~l~~i   60 (123)
T cd01046           2 LEEDLEANFKGETTEVGMYLAMARVAQREGYPEVAEELK-RIAMEEAEHAARFAELLGKV   60 (123)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999999999999999 88888888888888766543

Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=84.40  E-value=11  Score=30.56  Aligned_cols=60  Identities=17%  Similarity=0.228  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHhHHHHH-HHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           93 DECEAAINEQINVEYN-VSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~-ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ..+...|...+..|.. +.-.|..++..+..  .+-...+.||.....+|..|+..|-+.+..
T Consensus        72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~--e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~  132 (134)
T cd01041          72 GDTLENLKAAIAGETYEYTEMYPEFAEVAEE--EGFKEAARSFEAIAEAEKVHAERYKKALEN  132 (134)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3667888889999985 77999999999995  599999999999999999999998766543

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>PLN00179 acyl- [acyl-carrier protein] desaturase

Probab=80.31  E-value=18  Score=35.32  Aligned_cols=149  Identities=16%  Similarity=0.193  Sum_probs=106.0

Q ss_pred             CcHHHHH-HHHHHhHHHHHHHHHHHHHHhhcc-cCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC
Q 024844           91 YEDECEA-AINEQINVEYNVSYVYHALYAYFD-RDNIA--LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ  166 (261)
Q Consensus        91 ~s~~~e~-aLNeQIn~El~ASy~YlsmAa~Fd-rd~v~--L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~  166 (261)
                      +++.+.- ++-.-|..|---+|+-... .+|. +|.-|  -..-+.|-+...-||-.|+.-|-+|+.--| +|....|+.
T Consensus       115 Lpd~~~v~LvgdmiTEeaLPtY~~~Ln-~~~gv~d~tg~~~~~W~~Wvr~WTAEENRHgdlL~~YLylTg-rVDm~~iE~  192 (390)
T PLN00179        115 LPDDYFVVLVGDMITEEALPTYQTMLN-TLDGVRDETGASATPWARWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIEK  192 (390)
T ss_pred             CChhhhhhhhhcchhhhcchHHHHHHH-HhcccccccCCCCCchhhhccccccccchHHHHHHHHHhhcc-CcCHHHHHH
Confidence            4444433 3344556565555544332 2231 12222  245889999999999999999999998754 566555553


Q ss_pred             CC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          167 PP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       167 P~-----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                      -.     ..|+.....++...|-..-=.|+...-+-.+..++|.+.+|+.+...+. ..-.++-.|+.-..+++..+=.+
T Consensus       193 t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la~icg-~IAaDE~rHe~fY~~iV~~~le~  271 (390)
T PLN00179        193 TIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLAKICG-TIAADEKRHETAYTRIVEKLFEI  271 (390)
T ss_pred             HHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHHHHHH-HHhccHHHHHHHHHHHHHHHHhh
Confidence            11     2444332357899999998899999999999999999999999999998 88888889988888888876554


Q ss_pred             c
Q 024844          242 G  242 (261)
Q Consensus       242 g  242 (261)
                      .
T Consensus       272 d  272 (390)
T PLN00179        272 D  272 (390)
T ss_pred             C
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
3a68_A	212	Crystal Structure Of Plant Ferritin Reveals A Novel		7e-78
3a9q_A	212	Crystal Structure Analysis Of E173a Variant Of The		3e-77
3vnx_A	204	Crystal Structure Of Ferritin From Multicellular Gr		8e-47
1mfr_A	176	Crystal Structure Of M Ferritin Length = 176		9e-30
3ka8_A	176	Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 1		1e-29
3ka6_A	176	Frog M-Ferritin, Eed Mutant, With Cobalt Length = 1		3e-29
3ka9_A	176	Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 1		3e-29
3shx_A	176	Frog M-Ferritin With Magnesium, L134p Mutant Length		6e-29
3se1_A	176	Frog M-Ferritin With Magnesium, R72d Mutant Length		7e-29
3sh6_A	176	Frog M-Ferritin, D122r Mutant, With Magnesium Lengt		8e-29
2cei_A	183	Recombinant Human H Ferritin, K86q Mutant, Soaked W		5e-28
3ajo_A	182	Crystal Structure Of Wild-Type Human Ferritin H Cha		6e-28
4dyx_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		8e-28
2chi_A	183	Recombinant Human H Ferritin, K86q And E27d Mutant		1e-27
2clu_A	183	Recombinant Human H Ferritin, K86q And E107d Mutant		1e-27
3ajq_A	182	Crystal Structure Of Human H Ferritin E140q Mutant		1e-27
2cn7_A	183	Recombinant Human H Ferritin, K86q, E27d And E107d		2e-27
3ajp_A	182	Crystal Structure Of Human H Ferritin E140a Mutant		3e-27
3es3_A	183	Directing Noble Metal Ion Chemistry Within A Design		1e-26
3erz_A	183	Directing Noble Metal Ion Chemistry Within A Design		2e-26
1rcc_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		2e-26
4dyy_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		4e-26
1bg7_A	176	Localized Unfolding At The Junction Of Three Ferrit		4e-26
1rcd_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		5e-26
2z6m_A	176	Crystal Structure Of Human Ferritin H8 As Biotempla		6e-26
4dz0_A	172	Crystal Structure Of The Cu-adduct Of Human H-ferri		7e-26
1rci_A	173	Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Lengt		1e-25
1r03_A	182	Crystal Structure Of A Human Mitochondrial Ferritin		4e-24
3af8_X	174	Crystal Structure Of Pd(Ally)APO-C126afr Length = 1		8e-23
3af9_X	174	Crystal Structure Of Pd(Allyl)APO-C48afr Length = 1		2e-22
2gyd_A	170	Complex Of Equine Apoferritin With The H-Diaziflura		2e-22
2zur_X	174	Crystal Structure Of Rh(Nbd)APO-Fr Length = 174		2e-22
1ies_A	174	Tetragonal Crystal Structure Of Native Horse Spleen		3e-22
1h96_A	182	Recombinant Mouse L-Chain Ferritin Length = 182		3e-22
3np0_X	174	Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlf		4e-22
3np2_X	174	Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Le		4e-22
3noz_X	174	Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Le		5e-22
2v2l_A	174	Mutant (E53,56,57,60q) Recombinant Horse Spleen Apo		1e-21
2v2p_A	174	Mutant (E53,56,57,60q And R59m) Recombinant Horse S		1e-21
2zg8_X	174	Crystal Structure Of Pd(Allyl)APO-H49afr Length = 1		1e-21
2v2n_A	174	Mutant R59m Recombinant Horse Spleen Apoferritin Co		2e-21
2za6_A	175	Recombinant Horse L-Chain Apoferritin Length = 175		2e-21
2g4h_A	174	Anomalous Substructure Of Apoferritin Length = 174		2e-21
2ffx_J	173	Structure Of Human Ferritin L. Chain Length = 173		2e-21
2za7_A	171	Recombinant Horse L-Chain Apoferritin N-Terminal De		2e-21
2fg4_A	174	Structure Of Human Ferritin L Chain Length = 174		2e-21
3hx2_A	192	Crystal Structure Of Human Ferritin Phe167serfsx26		3e-21
3kxu_A	191	Crystal Structure Of Human Ferritin Ftl498instc Pat		3e-21
2zg9_X	174	Crystal Structure Of Pd(Allyl)APO-H114afr Length =		2e-20
2za8_A	167	Recombinant Horse L-Chain Apoferritin N-Terminal De		3e-20
3kx9_A	173	Engineering A Closed Form Of The Archaeoglobus Fulg		6e-09
1s3q_A	173	Crystal Structures Of A Novel Open Pore Ferritin Fr		1e-08
2x17_0	173	The X-Ray Structure Of Ferritin From Pyrococcus Fur		8e-08
2jd6_0	174	Crystal Structure Of The As Isolated Ferritin From		9e-08
1z4a_A	164	Ferritin From T. Maritima Length = 164		3e-07
1vlg_A	176	Crystal Structure Of Ferritin (Tm1128) From Thermot		7e-07
1z6o_A	212	Crystal Structure Of Trichoplusia Ni Secreted Ferri		5e-05
1z6o_M	191	Crystal Structure Of Trichoplusia Ni Secreted Ferri		3e-04

>pdb|3A68|A Chain A, Crystal Structure Of Plant Ferritin Reveals A Novel Metal Binding Site That Functions As A Transit Site For Metal Transfer In Ferritin Length = 212

Iteration: 1
 Score =  286 bits (732), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 140/208 (67%), Positives = 162/208 (77%), Gaps = 1/208 (0%)
Query: 55  ANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYH 114
            N   LTGV+F+PFEEVKKE            ARQKY DE E+A+NEQINVEYNVSYVYH
Sbjct: 5   TNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYH 64
Query: 115 ALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHA 174
           A++AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P S+FDHA
Sbjct: 65  AMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHA 124
Query: 175 EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY 234
           +KGDAL+AMELALSLEKLTNEKLL+LHSVA +N D Q+A+FVE+E+LGEQVEAI +I++Y
Sbjct: 125 DKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKRISEY 184
Query: 235 VSQLRMVGKGHGLWHFDQMLLHE-GDAA 261
           V+QLR VGKGHG+WHFDQMLLHE GDAA
Sbjct: 185 VAQLRRVGKGHGVWHFDQMLLHEGGDAA 212

>pdb|3A9Q|A Chain A, Crystal Structure Analysis Of E173a Variant Of The Soybean Ferritin Sfer4 Length = 212

Iteration: 1
 Score =  284 bits (727), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 161/207 (77%), Gaps = 1/207 (0%)
Query: 56  NSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHA 115
           N   LTGV+F+PFEEVKKE            ARQKY DE E+A+NEQINVEYNVSYVYHA
Sbjct: 6   NHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYHA 65
Query: 116 LYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAE 175
           ++AYFDRDN+ALRGL                  MEYQN RGGKVKL SI+ P S+FDHA+
Sbjct: 66  MFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHAD 125
Query: 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235
           KGDAL+AMELALSLEKLTNEKLL+LHSVA +N D Q+A+FVE+E+LG QVEAI +I++YV
Sbjct: 126 KGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGAQVEAIKRISEYV 185
Query: 236 SQLRMVGKGHGLWHFDQMLLHE-GDAA 261
           +QLR VGKGHG+WHFDQMLLHE GDAA
Sbjct: 186 AQLRRVGKGHGVWHFDQMLLHEGGDAA 212

>pdb|3VNX|A Chain A, Crystal Structure Of Ferritin From Multicellular Green Algae, Ulva Pertusa Length = 204

Iteration: 1
 Score =  183 bits (465), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 97/199 (48%), Positives = 126/199 (63%), Gaps = 1/199 (0%)
Query: 60  LTGVVFQPFEEVKKEXXXXXXX-XXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYA 118
           +TG+VFQPF EV+ E             AR +Y  ECEAAINEQIN+EY +SYVYHAL++
Sbjct: 4   VTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHALHS 63
Query: 119 YFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGD 178
           YF RDN+ L G                   M+YQ  RGG+V+L  +  P  EF + +KG+
Sbjct: 64  YFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGE 123
Query: 179 ALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL 238
           ALYAMELALSLEKL  +KL +L ++AD++ D  + +FVE   L EQV+A+ + A YVSQL
Sbjct: 124 ALYAMELALSLEKLNFQKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYVSQL 183
Query: 239 RMVGKGHGLWHFDQMLLHE 257
           R VGKG G++  DQ L  E
Sbjct: 184 RRVGKGVGVYLLDQELGEE 202

>pdb|1MFR|A Chain A, Crystal Structure Of M Ferritin Length = 176

Iteration: 1
 Score =  127 bits (318), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+L EQV+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3KA8|A Chain A, Frog M-Ferritin, Eqh Mutant, With Cobalt Length = 176

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/168 (39%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+L EQV+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3KA6|A Chain A, Frog M-Ferritin, Eed Mutant, With Cobalt Length = 176

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+L E+V+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYLEEEVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3KA9|A Chain A, Frog M-Ferritin, Eeh Mutant, With Cobalt Length = 176

Iteration: 1
 Score =  125 bits (313), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 97/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+L E+V+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYLEEEVKHIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3SHX|A Chain A, Frog M-Ferritin With Magnesium, L134p Mutant Length = 176

Iteration: 1
 Score =  124 bits (310), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+  EQV+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYPEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3SE1|A Chain A, Frog M-Ferritin With Magnesium, R72d Mutant Length = 176

Iteration: 1
 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN  GG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKDGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
            DP + +F+ESE+L EQV+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VDPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|3SH6|A Chain A, Frog M-Ferritin, D122r Mutant, With Magnesium Length = 176

Iteration: 1
 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 96/168 (57%), Gaps = 7/168 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +                 
Sbjct: 6   RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+YQN RGG+V L  I +P  +    E G+ L AM+ AL LEK  N+ LL LH +A   
Sbjct: 66  FMKYQNKRGGRVVLQDIKKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKLATDK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQ 252
             P + +F+ESE+L EQV+ I +I  +++ L+ +G    G G + FD+
Sbjct: 122 VRPHLCDFLESEYLEEQVKDIKRIGDFITNLKRLGLPENGMGEYLFDK 169

>pdb|2CEI|A Chain A, Recombinant Human H Ferritin, K86q Mutant, Soaked With Zn Length = 183

Iteration: 1
 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIQKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|3AJO|A Chain A, Crystal Structure Of Wild-Type Human Ferritin H Chain Length = 182

Iteration: 1
 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 70/175 (40%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 9   RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 68
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 69  LMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDK 124
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 125 NDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 179

>pdb|4DYX|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant 4his- Delta C-star Length = 172

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 66/155 (42%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 5   RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFHHQSHEEHEHAHK 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P    D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 65  LMKLQNQRGGRIFLQDIQKPDE--DDWESG--LNAMEAALHLEKNVNQSLLELHKLATDK 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
           NDP +A+F+E+ +L EQV+AI ++  +V+ LR +G
Sbjct: 121 NDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMG 155

>pdb|2CHI|A Chain A, Recombinant Human H Ferritin, K86q And E27d Mutant Length = 183

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN++   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIQKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|2CLU|A Chain A, Recombinant Human H Ferritin, K86q And E107d Mutant Length = 183

Iteration: 1
 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL L+K  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIQKP--DCDDWESG--LNAMECALHLDKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|3AJQ|A Chain A, Crystal Structure Of Human H Ferritin E140q Mutant Length = 182

Iteration: 1
 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 9   RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 68
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 69  LMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDK 124
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L +QV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 125 NDPHLCDFIETHYLNQQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 179

>pdb|2CN7|A Chain A, Recombinant Human H Ferritin, K86q, E27d And E107d Mutant Length = 183

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/175 (38%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN++   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL L+K  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIQKP--DCDDWESG--LNAMECALHLDKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|3AJP|A Chain A, Crystal Structure Of Human H Ferritin E140a Mutant Length = 182

Iteration: 1
 Score =  118 bits (296), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 9   RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEK 68
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 69  LMKLQNQRGGRIFLQDIKKP--DCDDWESG--LNAMECALHLEKNVNQSLLELHKLATDK 124
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L  QV+AI ++  +V+ LR +G    G   + FD+  L + D
Sbjct: 125 NDPHLCDFIETHYLNAQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 179

>pdb|3ES3|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. The Complex With Gold Ions. Ferritin H8-H9x Mutant Length = 183

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y+ + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEERCHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIQKP--DRDDWESG--LNAMEAALQLEKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP +++F+E+ +L  QV AI  +  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLSDFIETHYLNCQVCAIKCLGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|3ERZ|A Chain A, Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions On The Three-Fold Channel Length = 183

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/175 (39%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y+ + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 10  RQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEERCHAEK 69
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 70  LMKLQNQRGGRIFLQDIKKP--DRDDWESG--LNAMEAALQLEKNVNQSLLELHKLATDK 125
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
           NDP + +F+E+ +L  QV AI  +  +V+ LR +G    G   + FD+  L + D
Sbjct: 126 NDPHLCDFIETHYLNCQVCAIKCLGDHVTNLRKMGAPESGLAEYLFDKHTLGDSD 180

>pdb|1RCC|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ +  +CEA +N  +N++++ SYVY ++ +YF+RD++AL                    
Sbjct: 6   RQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSAAAKAHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            +EYQN RGG+V L S+ +P  +    +  + L A++ AL L+K  N+ LL LH+VA   
Sbjct: 66  LIEYQNQRGGRVFLQSVEKPERD----DWANGLEALQTALKLQKSVNQALLDLHAVAADK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH 245
           +DP M +F+ES +L E VE I K+  +++ L+ +   H
Sbjct: 122 SDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSH 159

>pdb|4DYY|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Length = 172

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 5   RQNYHQDSEAAINRQINLELYASYVYLSMSEYFDRDDVALKNFAKYFHHQSHEEHEHAHK 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ Q  RGG++ L  I +     D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 65  LMKLQEQRGGRIFLQDIQKADE--DDWESG--LNAMEAALHLEKNVNQSLLELHKLATDK 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
           NDP +A+F+E+ +L EQV+AI ++  +V+ LR +G
Sbjct: 121 NDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMG 155

>pdb|1BG7|A Chain A, Localized Unfolding At The Junction Of Three Ferritin Subunits. A Mechanism For Iron Release? Length = 176

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 95/174 (54%), Gaps = 7/174 (4%)
Query: 87  ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXX 146
            RQ +  +CEAAIN  +N+E   SY Y ++  YFDRD+IAL  +                
Sbjct: 5   VRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAE 64
Query: 147 XXMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADR 206
             M+ QN RGG++ L  + +P  +    E G+ L AM+ AL LEK  N+ LL LH V   
Sbjct: 65  KLMKDQNKRGGRIVLQDVQKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKVGSD 120
Query: 207 NNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHE 257
             DP + +F+E+E+  EQV++I ++  Y++ L+ +G    G G + FD+  + E
Sbjct: 121 KVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTMGE 174

>pdb|1RCD|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 91/158 (57%), Gaps = 4/158 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ +  +CEA +N  +N++++ SYVY ++ +YF+RD++AL                    
Sbjct: 6   RQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            +EYQN RGG+V L S+ +P  +    +  + L A++ AL L+K  N+ LL LH+VA   
Sbjct: 66  LIEYQNQRGGRVFLQSVEKPERD----DWANGLEALQTALKLQKSVNQALLDLHAVAADK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH 245
           +DP M +F+ES +L E VE I K+  +++ L+ +   H
Sbjct: 122 SDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSH 159

>pdb|2Z6M|A Chain A, Crystal Structure Of Human Ferritin H8 As Biotemplate For Noble Metal Nanoparticle Synthesis Length = 176

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y+ + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 9   RQNYDQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEERCHAEK 68
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ QN RGG++ L  I +P  + D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 69  LMKLQNQRGGRIFLQDIKKP--DRDDWESG--LNAMEAALQLEKNVNQSLLELHKLATDK 124
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
           NDP + +F+E+ +L  QV AI  +  +V+ LR +G
Sbjct: 125 NDPHLCDFIETHYLNCQVCAIKCLGDHVTNLRKMG 159

>pdb|4DZ0|A Chain A, Crystal Structure Of The Cu-adduct Of Human H-ferritin Variant Mic1 Labeled With A Dansyl Fluorophore Length = 172

Iteration: 1
 Score =  114 bits (284), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAAIN QIN+E   SYVY ++  YFDRD++AL+                   
Sbjct: 5   RQNYHQDSEAAINRQINLELYASYVYLSMSEYFDRDDVALKNFACYFHHQSHEEHEHAHK 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M+ Q  RGG++ L  I +     D  E G  L AME AL LEK  N+ LL LH +A   
Sbjct: 65  LMKLQEQRGGRIFLQDIQKADE--DDWESG--LNAMEAALHLEKNVNQSLLELHKLATDK 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
           NDP +A+F+E+ +L EQV+AI ++  +V+ LR +G
Sbjct: 121 NDPHLADFIETHYLNEQVKAIKELGDHVTNLRKMG 155

>pdb|1RCI|A Chain A, Bullfrog Red Cell L Ferritin TartrateMGPH 5.5 Length = 173

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ +  +CEA +N  +N+++  SYVY ++ +YF+RD++AL                    
Sbjct: 6   RQNFHQDCEAGLNRTVNLKFYSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEK 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            +EYQN RGG+V L S+ +P  +    +  + L A++ AL L+K  N+ LL LH+VA   
Sbjct: 66  LIEYQNQRGGRVFLQSVEKPERD----DWANGLEALQTALKLQKSVNQALLDLHAVAADK 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH 245
           +DP M +F+ES +L E VE I K+  +++ L+ +   H
Sbjct: 122 SDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSH 159

>pdb|1R03|A Chain A, Crystal Structure Of A Human Mitochondrial Ferritin Length = 182

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ +  + EAAIN QIN+E   SYVY ++  YF RD++AL                    
Sbjct: 9   RQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEK 68
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            M  QN RGG+++L  I +P  E D  E G  L+AME AL LEK  N+ LL LH++A   
Sbjct: 69  LMRLQNQRGGRIRLQDIKKP--EQDDWESG--LHAMECALLLEKNVNQSLLELHALASDK 124
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
            DP + +F+E+ +L EQV++I ++  +V  L  +G
Sbjct: 125 GDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMG 159

>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr Length = 174

Iteration: 1
 Score =  103 bits (258), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP +A+F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLADFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr Length = 174

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVAHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane Photolabeling Reagent Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 4   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 63
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 64  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 119
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 120 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 163

>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr Length = 174

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVXHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGL 247
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGL 161

>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen Ferritin Length = 174

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|1H96|A Chain A, Recombinant Mouse L-Chain Ferritin Length = 182

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 4/154 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  +FDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            +E+QN RGG+     + +P  +    E G    AME AL++EK  N+ LL LH++    
Sbjct: 65  LLEFQNDRGGRALFQDVQKPSQD----EWGKTQEAMEAALAMEKNLNQALLDLHALGSAR 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV 241
            DP + +F+ES +L ++V+ I K+  +++ LR V
Sbjct: 121 ADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRV 154

>pdb|3NP0|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlfr Length = 174

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCAFFHELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr Length = 174

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVAHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr Length = 174

Iteration: 1
 Score =  101 bits (251), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALCGVCHFFHELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G  L AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGL 247
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGL 161

>pdb|2V2L|A Chain A, Mutant (E53,56,57,60q) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKRQGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2V2P|A Chain A, Mutant (E53,56,57,60q And R59m) Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 5/161 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGL 247
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGL 161

>pdb|2ZG8|X Chain X, Crystal Structure Of Pd(Allyl)APO-H49afr Length = 174

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCAFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2V2N|A Chain A, Mutant R59m Recombinant Horse Spleen Apoferritin Cocrystallized With Haemin In Acidic Conditions Length = 174

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKMEGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2ZA6|A Chain A, Recombinant Horse L-Chain Apoferritin Length = 175

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 6   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 66  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 122 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 165

>pdb|2G4H|A Chain A, Anomalous Substructure Of Apoferritin Length = 174

Iteration: 1
 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2FFX|J Chain J, Structure Of Human Ferritin L. Chain Length = 173

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAR 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 255
            DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct: 121 TDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 171

>pdb|2ZA7|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-4) Length = 171

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/164 (34%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 2   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 61
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++    
Sbjct: 62  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQ 117
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 118 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 161

>pdb|2FG4|A Chain A, Structure Of Human Ferritin L Chain Length = 174

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 90/171 (52%), Gaps = 7/171 (4%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++    
Sbjct: 65  LLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAR 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 255
            DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G + F+++ L
Sbjct: 121 TDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLFERLTL 171

>pdb|3HX2|A Chain A, Crystal Structure Of Human Ferritin Phe167serfsx26 Mutant. This File Is A Part 13 OF THE SPLIT ENTRY AND CONTAINS THE Copies 1 And 2 Of The Total Six Copies Of The Biological Unit That Are Present In The Crystallographic Asymmetric Unit. The Entire Structure Contains Six Copies Of The Biological Unit In The Crystallographic Asymmetric Unit And Is Described In Remark 400 Length = 192

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 7   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 66
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++    
Sbjct: 67  LLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAR 122
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
            DP + +F+E+ FL E+V+ I K+  +++ L  +G
Sbjct: 123 TDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLG 157

>pdb|3KXU|A Chain A, Crystal Structure Of Human Ferritin Ftl498instc Pathogenic M Length = 191

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 4/155 (2%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  + EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 6   RQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYER 65
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     I +P  +    E G    AM+ A++LEK  N+ LL LH++    
Sbjct: 66  LLKMQNQRGGRALFQDIKKPAED----EWGKTPDAMKAAMALEKKLNQALLDLHALGSAR 121
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
            DP + +F+E+ FL E+V+ I K+  +++ L  +G
Sbjct: 122 TDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLG 156

>pdb|2ZG9|X Chain X, Crystal Structure Of Pd(Allyl)APO-H114afr Length = 174

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXX 147
           RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                 
Sbjct: 5   RQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAER 64
Query: 148 XMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            ++ QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL L ++    
Sbjct: 65  LLKMQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLAALGSAQ 120
Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGLWHF 250
            DP + +F+ES FL E+V+ I K+  +++ + R+VG   GL  +
Sbjct: 121 ADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEY 164

>pdb|2ZA8|A Chain A, Recombinant Horse L-Chain Apoferritin N-Terminal Deletion Mutant (Residues 1-8) Length = 167

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 91  YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXME 150
           Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+                  ++
Sbjct: 1   YSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRELAEEKREGAERLLK 60
Query: 151 YQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDP 210
            QN RGG+     + +P  +    E G    AM+ A+ LEK  N+ LL LH++     DP
Sbjct: 61  MQNQRGGRALFQDLQKPSQD----EWGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADP 116
Query: 211 QMAEFVESEFLGEQVEAINKIAKYVSQL-RMVGKGHGL 247
            + +F+ES FL E+V+ I K+  +++ + R+VG   GL
Sbjct: 117 HLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGL 154

>pdb|3KX9|A Chain A, Engineering A Closed Form Of The Archaeoglobus Fulgidus Ferritin By Site Directed Mutagenesis Length = 173

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 8/146 (5%)
Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGG 157
           A+N QIN E   +Y+Y ++ +YFD  +I L+G                    ++ + RGG
Sbjct: 11  ALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGG 68
Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           +VKL+++ +PPSE+D       L A E     E    +++  L  +A +  D     F++
Sbjct: 69  RVKLYAVEEPPSEWD-----SPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFLQ 123
Query: 218 SEFLGEQVEAINKIAKYVSQLRMVGK 243
             ++ EQVE        V +LR++G+
Sbjct: 124 W-YVAEQVEEEASALDIVEKLRLIGE 148

>pdb|1S3Q|A Chain A, Crystal Structures Of A Novel Open Pore Ferritin From The Hyperthermophilic Archaeon Archaeoglobus Fulgidus Length = 173

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGG 157
           A+N QIN E   +Y+Y +  +YFD  +I L+G                    ++ + RGG
Sbjct: 11  ALNRQINAEIYSAYLYLSXASYFD--SIGLKGFSNWXRVQWQEELXHAXKXFDFVSERGG 68
Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           +VKL+++ +PPSE+D       L A E     E    +++  L   A +  D     F++
Sbjct: 69  RVKLYAVEEPPSEWD-----SPLAAFEHVYEHEVNVTKRIHELVEXAXQEKDFATYNFLQ 123
Query: 218 SEFLGEQVEAINKIAKYVSQLRMVGK 243
             ++ EQVE        V +LR++G+
Sbjct: 124 W-YVAEQVEEEASALDIVEKLRLIGE 148

>pdb|2X17|0 Chain 0, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus Loaded With Ag(I) Length = 173

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGG 157
           A+N+Q+N E   +Y+Y A+ AYF  +++ L G                     Y   R G
Sbjct: 9   ALNDQLNRELYSAYLYFAMAAYF--EDLGLEGFANWMKAQAEEEIGHALRFYNYIYDRNG 66
Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           +V+L  I +PP E++       L A E A   EK  ++ +  L ++A+   D     F+E
Sbjct: 67  RVELDEIPKPPKEWE-----SPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLE 121
Query: 218 SEFLGEQVEAINKIAKYVSQLRMV 241
             F+ EQVE    + K + +L+  
Sbjct: 122 W-FINEQVEEEASVKKILDKLKFA 144

>pdb|2JD6|0 Chain 0, Crystal Structure Of The As Isolated Ferritin From The Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus Length = 174

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 8/144 (5%)
Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNLRGG 157
           A+N+Q+N E   +Y+Y A+ AYF  +++ L G                     Y   R G
Sbjct: 9   ALNDQLNRELYSAYLYFAMAAYF--EDLGLEGFANWMKAQAEEEIGHALRFYNYIYDRNG 66
Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
           +V+L  I +PP E++       L A E A   EK  ++ +  L ++A+   D     F+E
Sbjct: 67  RVELDEIPKPPKEWE-----SPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLE 121
Query: 218 SEFLGEQVEAINKIAKYVSQLRMV 241
             F+ EQVE    + K + +L+  
Sbjct: 122 W-FINEQVEEEASVKKILDKLKFA 144

>pdb|1Z4A|A Chain A, Ferritin From T. Maritima Length = 164

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQ 152
           ++   A+NEQ+N E   SY+Y ++  YFD +    +G                    EY 
Sbjct: 6   EKVRKALNEQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQAQEELTHAMKFYEYI 63
Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
             RGG+V+L +I +PPS ++  +      A E AL  E+   + + ++  +A    D   
Sbjct: 64  YERGGRVELEAIEKPPSNWNGIKD-----AFEAALKHEEFVTQSIYNILELASEEKDHAT 118
Query: 213 AEFVESEFLGEQVEAINKI 231
             F++  F+ EQVE  +++
Sbjct: 119 VSFLKW-FVDEQVEEEDQV 136

>pdb|1VLG|A Chain A, Crystal Structure Of Ferritin (Tm1128) From Thermotoga Maritima At 2.00 A Resolution Length = 176

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQ 152
           ++   A+N+Q+N E   SY+Y ++  YFD +    +G                    EY 
Sbjct: 18  EKVRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQAQEELTHAMKFYEYI 75
Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
             RGG+V+L +I +PPS ++  +      A E AL  E+   + + ++  +A    D   
Sbjct: 76  YERGGRVELEAIEKPPSNWNGIKD-----AFEAALKHEEFVTQSIYNILELASEEKDHAT 130
Query: 213 AEFVESEFLGEQVEAINKI 231
             F++  F+ EQVE  +++
Sbjct: 131 VSFLKW-FVDEQVEEEDQV 148

>pdb|1Z6O|A Chain A, Crystal Structure Of Trichoplusia Ni Secreted Ferritin Length = 212

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 155 RGGKVKL--HSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN----N 208
           RG K+    HS M+   +   AE  + L A+  AL  +K   E+   +H  A RN    +
Sbjct: 97  RGDKMNFDQHSTMKTERKNYTAENHE-LEALAKALDTQKELAERAFYIHREATRNSQHLH 155
Query: 209 DPQMAEFVESEFLGEQVEAINKIAKYVSQLR---MVGKGH----GLWHFDQML 254
           DP++A+++E EF+ +  E I  +A + S L+       GH     L+ FD+ L
Sbjct: 156 DPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYL 208

>pdb|1Z6O|M Chain M, Crystal Structure Of Trichoplusia Ni Secreted Ferritin Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 12/170 (7%)
Query: 95  CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLXXXXXXXXXXXXXXXXXXMEYQNL 154
           C  ++ +QI +E   S  Y A+ A+F +D +   G                   +EY  +
Sbjct: 21  CRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLM 80
Query: 155 RGGKVK-LHSIMQ--PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN---N 208
           RG     + S++Q  PP+    + KG  + A+E ALS+E    + + ++    + +   N
Sbjct: 81  RGELTNDVSSLLQVRPPTR--SSWKG-GVEALEHALSMESDVTKSIRNVIKACEDDSEFN 137
Query: 209 DPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH---GLWHFDQMLL 255
           D  + +++  +FL EQ +    +A   S L+ +   H   G + FD+ LL
Sbjct: 138 DYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3a68_A	212	Sferh-4, ferritin-4, chloroplastic; 4-helix bundle	3e-98
3vnx_A	204	Ferritin; 4-helix bundle, iron storage, oxidoreduc	5e-94
2cih_A	183	Ferritin heavy chain; apoferritin, ferroxidase, DI	2e-75
3ka8_A	176	Ferritin, middle subunit; iron storage, DIIRON, ir	5e-73
1rcd_A	173	L ferritin; iron storage; 2.00A {Rana catesbeiana}	2e-72
2v2p_A	174	Ferritin light chain; metal transport, iron, haemi	1e-70
3kxu_A	191	Ferritin; iron storage protein, disorder, iron, me	2e-70
1z6o_M	191	Ferritin heavy chain; metal binding protein, iron	3e-69
1vlg_A	176	Ferritin; TM1128, structural genomics, JCSG, prote	6e-67
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	1e-66
3e6s_A	168	Ferritin; iron storage, ferroxidase, oxidoreductas	5e-66
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	1e-65
1s3q_A	173	Ferritin; ferroxidase, four helix bundle, iron sto	2e-65
1krq_A	167	Ferritin; H-chain like four-helix bundle, binding	8e-65
3qz3_A	184	Ferritin; structural genomics, the center for stru	2e-64
1eum_A	165	Ferritin 1; ECFTNA, metal binding protein; 2.05A {	6e-64
3bvf_A	181	Ferritin; iron storage, metal-binding, oxidoreduct	1e-62
1z6o_A	212	Ferritin light chain; metal binding protein, iron	2e-58
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	9e-12
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	2e-11
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	2e-11
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	2e-10
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	5e-10
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	3e-09
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	5e-07
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A Length = 212

 Score =  285 bits (731), Expect = 3e-98
 Identities = 161/211 (76%), Positives = 184/211 (87%)

Query: 51  AAVDANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVS 110
           A    N   LTGV+F+PFEEVKKE+  VP  P  SLARQKY DE E+A+NEQINVEYNVS
Sbjct: 1   AKGSTNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVS 60

Query: 111 YVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170
           YVYHA++AYFDRDN+ALRGLAKFFKESSEEEREHAEK MEYQN RGGKVKL SI+ P S+
Sbjct: 61  YVYHAMFAYFDRDNVALRGLAKFFKESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSD 120

Query: 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK 230
           FDHA+KGDAL+AMELALSLEKLTNEKLL+LHSVA +N D Q+A+FVE+E+LGEQVEAI +
Sbjct: 121 FDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLADFVETEYLGEQVEAIKR 180

Query: 231 IAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 261
           I++YV+QLR VGKGHG+WHFDQMLLHEG  A
Sbjct: 181 ISEYVAQLRRVGKGHGVWHFDQMLLHEGGDA 211

>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa} Length = 204

 Score =  274 bits (702), Expect = 5e-94
 Identities = 113/202 (55%), Positives = 148/202 (73%), Gaps = 1/202 (0%)

Query: 57  SMPLTGVVFQPFEEVKKEVLDVPVSPLL-SLARQKYEDECEAAINEQINVEYNVSYVYHA 115
           +  +TG+VFQPF EV+ E+  V  +P+  S AR +Y  ECEAAINEQIN+EY +SYVYHA
Sbjct: 1   AQEVTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHA 60

Query: 116 LYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAE 175
           L++YF RDN+ L G AKFFKE+S+EEREHA   M+YQ  RGG+V+L  +  P  EF + +
Sbjct: 61  LHSYFARDNVGLPGFAKFFKEASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDD 120

Query: 176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV 235
           KG+ALYAMELALSLEKL  +KL +L ++AD++ D  + +FVE   L EQV+A+ + A YV
Sbjct: 121 KGEALYAMELALSLEKLNFQKLQALQAIADKHKDAALCDFVEGGLLSEQVDAVKEHAVYV 180

Query: 236 SQLRMVGKGHGLWHFDQMLLHE 257
           SQLR VGKG G++  DQ L  E
Sbjct: 181 SQLRRVGKGVGVYLLDQELGEE 202

>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A Length = 183

 Score =  226 bits (577), Expect = 2e-75
 Identities = 79/183 (43%), Positives = 111/183 (60%), Gaps = 7/183 (3%)

Query: 81  SPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEE 140
           +   S  RQ Y  + EAAIN QIN++   SYVY ++  YFDRD++AL+  AK+F   S E
Sbjct: 3   TASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHE 62

Query: 141 EREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSL 200
           EREHAEK M+ QN RGG++ L  I +P  +    +    L AME AL LEK  N+ LL L
Sbjct: 63  EREHAEKLMKLQNQRGGRIFLQDIQKPDCD----DWESGLNAMECALHLEKNVNQSLLEL 118

Query: 201 HSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHE 257
           H +A   NDP + +F+E+ +L EQV+AI ++  +V+ LR +G    G   + FD+  L +
Sbjct: 119 HKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLGD 178

Query: 258 GDA 260
            D 
Sbjct: 179 SDN 181

>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A Length = 176

 Score =  219 bits (561), Expect = 5e-73
 Identities = 81/177 (45%), Positives = 115/177 (64%), Gaps = 7/177 (3%)

Query: 84  LSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEERE 143
           +S  RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +A+FFKE S EERE
Sbjct: 2   VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEERE 61

Query: 144 HAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSV 203
           HAEKFM+YQN RGG+V L  I +P  +       + L AM+ AL LEK  N+ LL LH +
Sbjct: 62  HAEKFMKYQNKRGGRVVLQDIKKPERDEWG----NTLEAMQAALQLEKTVNQALLDLHKL 117

Query: 204 ADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHE 257
           A    DP + +F+ESE+L EQV+ I +I  +++ L+ +G    G G + FD+  + E
Sbjct: 118 ATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGLPENGMGEYLFDKHSVKE 174

>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A Length = 173

 Score =  218 bits (557), Expect = 2e-72
 Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 7/174 (4%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ +  +CEA +N  +N++++ SYVY ++ +YF+RD++AL   AKFF+E SEEE+EH
Sbjct: 3   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 62

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AEK +EYQN RGG+V L S+ +P       +  + L A++ AL L+K  N+ LL LH+VA
Sbjct: 63  AEKLIEYQNQRGGRVFLQSVEKPE----RDDWANGLEALQTALKLQKSVNQALLDLHAVA 118

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH---GLWHFDQMLL 255
              +DP M +F+ES +L E VE I K+  +++ L+ +   H     + F++  L
Sbjct: 119 ADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 172

>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ... Length = 174

 Score =  213 bits (545), Expect = 1e-70
 Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 7/176 (3%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ Y  E EAA+N  +N+    SY Y +L  YFDRD++AL G+  FF++ ++++ + 
Sbjct: 2   SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQG 61

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AE+ ++ QN RGG+     + +P  +           AM+ A+ LEK  N+ LL LH++ 
Sbjct: 62  AERLLKMQNQRGGRALFQDLQKPSQDEWG----TTPDAMKAAIVLEKSLNQALLDLHALG 117

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHE 257
               DP + +F+ES FL E+V+ I K+  +++ ++ +     G G + F+++ L  
Sbjct: 118 SAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVGSQAGLGEYLFERLTLKH 173

>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A Length = 191

 Score =  214 bits (546), Expect = 2e-70
 Identities = 62/178 (34%), Positives = 99/178 (55%), Gaps = 7/178 (3%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ Y  + EAA+N  +N+    SY Y +L  YFDRD++AL G++ FF+E +EE+RE 
Sbjct: 3   SQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREG 62

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
            E+ ++ QN RGG+     I +P  +           AM+ A++LEK  N+ LL LH++ 
Sbjct: 63  YERLLKMQNQRGGRALFQDIKKPAEDEWG----KTPDAMKAAMALEKKLNQALLDLHALG 118

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHEGD 259
               DP + +F+E+ FL E+V+ I K+  +++ L  +G    G G +   +  L    
Sbjct: 119 SARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGGPEAGLGEYLSSKGSLSSTT 176

>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 191

 Score =  210 bits (537), Expect = 3e-69
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 9/182 (4%)

Query: 85  SLARQKYE---DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEE 141
               + +      C  ++ +QI +E   S  Y A+ A+F +D +   G A+ F +++ EE
Sbjct: 8   VQIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEE 67

Query: 142 REHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLH 201
           REHA K +EY  +RG      S +        +     + A+E ALS+E    + + ++ 
Sbjct: 68  REHAMKLIEYLLMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVI 127

Query: 202 SVADRN---NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH---GLWHFDQMLL 255
              + +   ND  + +++  +FL EQ +    +A   S L+ +   H   G + FD+ LL
Sbjct: 128 KACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLL 187

Query: 256 HE 257
             
Sbjct: 188 GI 189

>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A* Length = 176

 Score =  204 bits (521), Expect = 6e-67
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 15/180 (8%)

Query: 85  SLARQKYE------DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESS 138
                 +       ++   A+N+Q+N E   SY+Y ++  YFD +    +G A + K+ +
Sbjct: 4   DKIHHHHHHMMVISEKVRKALNDQLNREIYSSYLYLSMATYFDAE--GFKGFAHWMKKQA 61

Query: 139 EEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLL 198
           +EE  HA KF EY   RGG+V+L +I +PPS +          A E AL  E+   + + 
Sbjct: 62  QEELTHAMKFYEYIYERGGRVELEAIEKPPSNW-----NGIKDAFEAALKHEEFVTQSIY 116

Query: 199 SLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWHFDQMLLHE 257
           ++  +A    D     F++  F+ EQVE  +++ + +  L     +   ++  D+ L   
Sbjct: 117 NILELASEEKDHATVSFLKW-FVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYLGQR 175

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A Length = 189

 Score =  204 bits (521), Expect = 1e-66
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 10/174 (5%)

Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEK 147
            +  + +  A + EQI+ E+  +  Y A+  YFD ++  L  LAK F   + EER HA  
Sbjct: 4   YEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDSED--LPQLAKHFYSQAVEERNHAMM 61

Query: 148 FMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
            +++   R  +V++  +    ++FD         A+ LAL  E+   +++  L +VA   
Sbjct: 62  LVQHLLDRDLRVEIPGVDTVRNQFD-----RPREALALALDQERTVTDQVGRLTAVARDE 116

Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDAA 261
            D    +F++  FL EQ+E +  +A  V        G  L+  +  +  E D A
Sbjct: 117 GDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRA--GANLFELENFVAREVDVA 167

>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} PDB: 3e6r_A Length = 168

 Score =  202 bits (515), Expect = 5e-66
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           +E     N Q+  E+  S VY +   +FD+++    G+A +    S EEREH   F+++ 
Sbjct: 3   EELLDLFNRQVTQEFTASQVYLSASIWFDQND--WEGMAAYMLAESAEEREHGLGFVDFA 60

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           N R   ++L ++  P S  +           +  L LE+     LL+L   A   +D  +
Sbjct: 61  NKRNIPIELQAVPAPVSCAEW---SSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAV 117

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH-GLWHFDQMLLH 256
             F+   F  +QV   +KI   ++++    +    L   D +   
Sbjct: 118 MAFLN-PFHLQQVNEEDKIGSILAKVTDENRTPGLLRSLDVVSFL 161

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0 Length = 174

 Score =  201 bits (513), Expect = 1e-65
 Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           +    A+N+Q+N E   +Y+Y A+ AYF+  ++ L G A + K  +EEE  HA +F  Y 
Sbjct: 4   ERMLKALNDQLNRELYSAYLYFAMAAYFE--DLGLEGFANWMKAQAEEEIGHALRFYNYI 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
             R G+V+L  I +PP E+        L A E A   EK  ++ +  L ++A+   D   
Sbjct: 62  YDRNGRVELDEIPKPPKEW-----ESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYST 116

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQMLLHEGDAA 261
             F+E  F+ EQVE    + K + +L+        L+  D+ L       
Sbjct: 117 RAFLEW-FINEQVEEEASVKKILDKLKFAKDSPQILFMLDKELSARAPKL 165

>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A Length = 173

 Score =  200 bits (511), Expect = 2e-65
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 9/163 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           ++   A+N QIN E   +Y+Y ++ +YFD  +I L+G + + +   +EE  HA K  ++ 
Sbjct: 6   EKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFV 63

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           + RGG+VKL+++ +PPSE+        L A E     E    +++  L  +A +  D   
Sbjct: 64  SERGGRVKLYAVEEPPSEW-----DSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFAT 118

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
             F++  ++ EQVE        V +LR++G+    L   D+ L
Sbjct: 119 YNFLQW-YVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKEL 160

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1 Length = 167

 Score =  198 bits (506), Expect = 8e-65
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
            E    +NEQIN E   + +Y ++ ++   ++  L G   F    + EE +HA+K + Y 
Sbjct: 4   KEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLITYL 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           N     V+L  + QP   F        L   E     E+   + + +L      + D   
Sbjct: 62  NETDSHVELQEVKQPEQNFK-----SLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYST 116

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQMLL 255
             F++  ++ EQ E        V +++++G+ G+GL+  DQ + 
Sbjct: 117 FNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIK 159

>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} Length = 184

 Score =  198 bits (505), Expect = 2e-64
 Identities = 38/181 (20%), Positives = 73/181 (40%), Gaps = 12/181 (6%)

Query: 85  SLARQKY---EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEE 141
           +   Q++          +NEQIN+E+  S +Y  + A+ +  +    G A+F +  + EE
Sbjct: 2   NAMNQEFFMLSQAMVEHLNEQINLEFFSSNLYLQMSAWCE--DKGFDGAAEFLRAHAVEE 59

Query: 142 REHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLH 201
            +H ++   Y +  G    L +I  P  +F                  E+   +++  L 
Sbjct: 60  MQHMQRLFTYVSETGALPILGAIAAPRHDFA-----SLGEVFRETYQHEQKITQQINKLA 114

Query: 202 SVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQMLLHEGDA 260
            VA  + D     F++  ++ EQ E        + +L +VG+ G  L+  D+ L      
Sbjct: 115 HVAFTSQDYSTFNFLQW-YVAEQHEEEKLFKGILDKLELVGEDGKALFFIDKDLAALAKK 173

Query: 261 A 261
            
Sbjct: 174 G 174

>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1 Length = 165

 Score =  196 bits (501), Expect = 6e-64
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
            E    +NEQ+N+E   S +Y  + A+         G A F +  ++EE  H ++  +Y 
Sbjct: 4   PEMIEKLNEQMNLELYSSLLYQQMSAWCSYHT--FEGAAAFLRRHAQEEMTHMQRLFDYL 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
              G   +++++  P +E+   ++       +     E+L  +K+  L   A  N D   
Sbjct: 62  TDTGNLPRINTVESPFAEYSSLDE-----LFQETYKHEQLITQKINELAHAAMTNQDYPT 116

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
             F++  ++ EQ E        + +L + GK G GL+  D+ L
Sbjct: 117 FNFLQW-YVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKEL 158

>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1 Length = 212

 Score =  184 bits (468), Expect = 2e-58
 Identities = 41/183 (22%), Positives = 73/183 (39%), Gaps = 12/183 (6%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
                         +     +    SY Y    AYF+       G +K FK+ S+E    
Sbjct: 27  VYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSK 86

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEF-DHAEKGDALYAMELALSLEKLTNEKLLSLHSV 203
               +++   RG K+         +E  ++  +   L A+  AL  +K   E+   +H  
Sbjct: 87  TIDIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHRE 146

Query: 204 ADRN----NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH-------GLWHFDQ 252
           A RN    +DP++A+++E EF+ +  E I  +A + S L+     +        L+ FD+
Sbjct: 147 ATRNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDE 206

Query: 253 MLL 255
            L 
Sbjct: 207 YLQ 209

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1 Length = 161

 Score = 60.8 bits (147), Expect = 9e-12
 Identities = 23/143 (16%), Positives = 43/143 (30%), Gaps = 9/143 (6%)

Query: 100 NEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159
           N  +  E      Y   +   +  +  L  +AK  +E S EE  HA+K +       G  
Sbjct: 12  NAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHP 69

Query: 160 KLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE 219
            L  +          E       +E  L+ E    +             D       E  
Sbjct: 70  NLQKLDPLRIGEGPRE------TLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFE-S 122

Query: 220 FLGEQVEAINKIAKYVSQLRMVG 242
            + ++   ++ +   +S    +G
Sbjct: 123 LITDEEGHVDFLETQISLYDRLG 145

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A* Length = 174

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
             +NEQ+  E      Y       D  N     LA   +  S +E  HAE+  +   L  
Sbjct: 11  RLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLD 68

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G        Q        +        E  L++E     +L     +     D   A  +
Sbjct: 69  G----LPNYQRIGSLRIGQ--TLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLL 122

Query: 217 ESEFLGEQVEAINKIAKYVSQLRMVG 242
           E + + ++ E I+ +   +  +  +G
Sbjct: 123 E-KIVADEEEHIDYLETQLELMDKLG 147

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A* Length = 155

 Score = 59.6 bits (144), Expect = 2e-11
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 9/146 (6%)

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
             +N+ +  E      Y      ++  +  L  L K     S +E +HA+K ++      
Sbjct: 9   QHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLE 66

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G       +Q   +    E       +E  L LE+     L +  +  +   D    E +
Sbjct: 67  GLPN----LQELGKLLIGE--HTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELL 120

Query: 217 ESEFLGEQVEAINKIAKYVSQLRMVG 242
           E + L  + + I+ +   +  +  +G
Sbjct: 121 E-DILESEEDHIDWLETQLDLIDKIG 145

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A* Length = 158

 Score = 56.9 bits (137), Expect = 2e-10
 Identities = 27/146 (18%), Positives = 53/146 (36%), Gaps = 9/146 (6%)

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
             +N+ +  E      Y      F   N  L+ L       S +E +HA++++E      
Sbjct: 9   NYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLE 66

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G   L  + +     D  E       +   L+LE    + L      AD  +D    + +
Sbjct: 67  GLPNLQDLGKLNIGEDVEE------MLRSDLALELDGAKNLREAIGYADSVHDYVSRDMM 120

Query: 217 ESEFLGEQVEAINKIAKYVSQLRMVG 242
             E L ++   I+ +   +  ++ +G
Sbjct: 121 I-EILRDEEGHIDWLETELDLIQKMG 145

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A Length = 154

 Score = 55.7 bits (134), Expect = 5e-10
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 11/147 (7%)

Query: 97  AAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG 156
             +N  +  E      Y      ++  +     L +      EEE +HA+  +    L  
Sbjct: 9   DYLNTLLTGELAARDQYFIHSRMYE--DWGFSKLYERLNHEMEEETQHADALLRRILLLE 66

Query: 157 GKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV 216
           G  ++      P              +E  L LE+     L    ++ +++ D    + +
Sbjct: 67  GTPRMRPDDIHPGT-------TVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDIL 119

Query: 217 ESEFLGEQVEA-INKIAKYVSQLRMVG 242
           +   L +  E     + + +  +  +G
Sbjct: 120 K-AQLADTEEDHAYWLEQQLGLIARMG 145

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308} Length = 182

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 9/143 (6%)

Query: 100 NEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV 159
           NE + +E      Y   Y   +  +     LAK  +E S EE  HA+K ++      G  
Sbjct: 33  NEALFLELGAVNQYWLHYRLLN--DWGYTRLAKKEREESIEEMHHADKLIDRIIFLEG-- 88

Query: 160 KLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESE 219
                +Q  S     +  +    +E  L  E            + D+  D    +  + E
Sbjct: 89  --FPNLQTVSPLRIGQ--NVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFD-E 143

Query: 220 FLGEQVEAINKIAKYVSQLRMVG 242
            L ++   I+ +   +  L  +G
Sbjct: 144 LLADEEGHIDFLETQLDLLAKIG 166

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A* Length = 179

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 25/133 (18%), Positives = 39/133 (29%), Gaps = 11/133 (8%)

Query: 111 YVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE 170
           Y+          D++    LA   K  + +E  HAE F E     GG+       Q   +
Sbjct: 30  YMNQHYSL----DDMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPT----TQKEGK 81

Query: 171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINK 230
               +        E     E  T E       V     D   A   E   + E+   +  
Sbjct: 82  VVTGQ--AVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFE-RIIEEEQAHLTY 138

Query: 231 IAKYVSQLRMVGK 243
                S ++ +G 
Sbjct: 139 YENIGSHIKNLGD 151

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} Length = 161

 Score = 47.2 bits (112), Expect = 6e-07
 Identities = 22/145 (15%), Positives = 46/145 (31%), Gaps = 13/145 (8%)

Query: 100 NEQINVEYNVS--YVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157
           N  +  E      Y  H        ++     +A   ++ S EE  HA+K ++     GG
Sbjct: 12  NAALRSELTAVSQYWLHYRLQ----EDWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGG 67

Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
              L  +          E       ++  L+ E       +      ++  D       E
Sbjct: 68  HPNLQRLNPLRIGQTLRE------TLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFE 121

Query: 218 SEFLGEQVEAINKIAKYVSQLRMVG 242
            E + ++   I+ +   +  +  +G
Sbjct: 122 -ELIADEEGHIDYLETQIDLMGSIG 145

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 5e-04
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 84/238 (35%)

Query: 26  YTKSTASLVKLGCISPR---TKRSLKVSAAVDAN-----SMPLTGVVFQPFEEVKKEVL- 76
                 +   L C   +   T R  +V+  + A      S+    +   P E   K +L 
Sbjct: 254 QNAKAWNAFNLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE--VKSLLL 308

Query: 77  --------DVP-----VSPL-LSL---------AR-QKYEDECEAAINEQINVEYNV--S 110
                   D+P      +P  LS+         A    ++      +   I    NV   
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 111 YVYHALY---AYFDRD-NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ 166
             Y  ++   + F    +I    L+  + +  + +       +          KLH    
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD---VMVVVN---------KLHK--- 413

Query: 167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSV-----ADRNNDPQM-AEFVES 218
                         Y++     +EK   E  +S+ S+         N+  +    V+ 
Sbjct: 414 --------------YSL-----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
3vnx_A	204	Ferritin; 4-helix bundle, iron storage, oxidoreduc	100.0
3a68_A	212	Sferh-4, ferritin-4, chloroplastic; 4-helix bundle	100.0
3ka8_A	176	Ferritin, middle subunit; iron storage, DIIRON, ir	100.0
3kxu_A	191	Ferritin; iron storage protein, disorder, iron, me	100.0
2cih_A	183	Ferritin heavy chain; apoferritin, ferroxidase, DI	100.0
1rcd_A	173	L ferritin; iron storage; 2.00A {Rana catesbeiana}	100.0
2v2p_A	174	Ferritin light chain; metal transport, iron, haemi	100.0
1z6o_A	212	Ferritin light chain; metal binding protein, iron	100.0
1z6o_M	191	Ferritin heavy chain; metal binding protein, iron	100.0
3e6s_A	168	Ferritin; iron storage, ferroxidase, oxidoreductas	100.0
1s3q_A	173	Ferritin; ferroxidase, four helix bundle, iron sto	100.0
3qz3_A	184	Ferritin; structural genomics, the center for stru	100.0
1eum_A	165	Ferritin 1; ECFTNA, metal binding protein; 2.05A {	100.0
1krq_A	167	Ferritin; H-chain like four-helix bundle, binding	100.0
3uno_A	189	Probable bacterioferritin BFRB; ferroxidase activi	100.0
3bvf_A	181	Ferritin; iron storage, metal-binding, oxidoreduct	100.0
1vlg_A	176	Ferritin; TM1128, structural genomics, JCSG, prote	100.0
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	100.0
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	100.0
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	100.0
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	99.96
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	99.96
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	99.96
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	99.96
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	99.95
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	99.95
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	99.95
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	99.95
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	99.94
2vzb_A	170	Putative bacterioferritin-related protein; DPS, DP	99.94
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	99.94
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	99.92
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	99.92
1ji5_A	142	DLP-1; dodecamer, four-helix bundle, metal transpo	99.91
2c41_A	158	DPS family DNA-binding stress response protein; ir	99.9
1n1q_A	149	DPS protein; four-helix bundle, unknown function;	99.89
2vxx_A	192	Starvation induced DNA binding protein; stress res	99.89
1jig_A	146	DLP-2; dodecamer, four-helix bundle, metal transpo	99.89
2clb_A	188	DPS-like protein; DI-iron carboxylate, hypothetica	99.88
2d5k_A	156	DPS, DPS family protein; four helix bundle, metal	99.88
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	99.83
1tjo_A	182	Iron-rich DPSA-homolog protein; ferritin, low-iron	99.78
2fjc_A	156	Antigen TPF1; mini ferritin, iron binding protein,	99.6
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	99.59
2chp_A	153	MRGA, metalloregulation DNA-binding stress protein	99.59
1o9r_A	162	Agrobacterium tumefaciens DPS; iron-binding protei	99.59
2yjk_A	161	AFP, DPS; metal-binding protein, iron uptake, ferr	99.58
2bk6_A	156	Non-heme iron-containing ferritin; DPS (DNA bindin	99.58
2c2u_A	207	DPS, DNA-binding stress response protein; DNA-bind	99.56
2yw6_A	183	DNA protection during starvation protein; DNA-bind	99.53
2z90_A	161	Starvation-inducible DNA-binding protein or FINE t	99.53
2cf7_A	165	DPR; peroxide resistance, DPS-family, ferritin-lik	99.53
2wlu_A	175	DPS-like peroxide resistance protein; DNA-binding,	99.53
2xgw_A	199	Peroxide resistance protein; metal binding protein	99.52
2c2j_A	211	DNA-binding stress response protein; DNA-binding p	99.51
3ak8_A	167	DNA protection during starvation protein; DPS-like	99.48
3kwo_A	152	Putative bacterioferritin; alpha-helix, bacterial	99.48
3iq1_A	159	DPS family protein; csgid, SAD, niaid, metal trans	99.47
4di0_A	144	Rubrerythrin; ssgcid, seattle structural genomics	99.47
4eve_A	164	Neutrophil-activating protein; dodecamer, four-hel	99.46
2pyb_A	151	NAPA, neutrophil activating protein; ferritin, DPS	99.42
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	99.15
2fzf_A	175	Hypothetical protein; structural genomics, southea	99.07
3qhb_A	179	Symerythrin, ORF180; four-helix bundle, carboxylat	98.77
4a25_A	169	DPS, ferritin DPS family protein; metal binding pr	98.75
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	98.39
4etr_A	153	Putative uncharacterized protein; DUF2383, domain	98.37
1zuj_A	179	Hypothetical protein llacc01001955; oxidative stre	98.25
1zs3_A	182	Lactococcus lactis Mg1363 DPSA; oxidative stress,	98.23
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	98.23
1o9i_A	266	Pseudocatalase; oxidoreductase, hexamer, dimangane	97.78
2v8t_A	302	Manganese-containing pseudocatalase; manganese cat	97.72
1jm0_A	50	Protein (four-helix bundle model); alpha-helical b	96.12
2uw1_A	338	Desaturase, plastid delta4 multifunctional acyl-AC	96.08
2ib0_A	170	Conserved hypothetical alanine rich protein; 4-hel	95.76
1za0_A	275	Possible acyl-[acyl-carrier protein] desaturase D	95.52
2gs4_A	166	Protein YCIF; stress proteins, rubrerythrin, metal	95.3
2gyq_A	173	YCFI, putative structural protein; structural geno	94.99
3ogh_B	171	Protein YCIE; iron-binding, MCSG, four-helix-bundl	94.76
3k6c_A	95	Uncharacterized protein NE0167; structural genomic	94.62
1zpy_A	95	Hypothetical protein NE0167; structural genomics,	94.45
2itb_A	206	TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative	92.83
3hl1_A	317	Ferritin like protein; structural genomics, joint	91.88
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	91.46
3hiu_A	166	Uncharacterized protein; APC40011, XCC3681, xantho	90.7
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	90.65
4di0_A	144	Rubrerythrin; ssgcid, seattle structural genomics	90.58
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	89.25
2fzf_A	175	Hypothetical protein; structural genomics, southea	89.12
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	88.6
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	86.55
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	86.51
2e0z_A	345	Virus-like particle; bacteriophage, HK97; 3.60A {P	86.02
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	85.65
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	84.94
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	84.89
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	84.23
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	83.36
3qhb_A	179	Symerythrin, ORF180; four-helix bundle, carboxylat	83.31
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	81.24
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	80.72
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	80.24

>3vnx_A Ferritin; 4-helix bundle, iron storage, oxidoreductase; 2.40A {Ulva pertusa}

Probab=100.00  E-value=1.2e-64  Score=444.10  Aligned_cols=202  Identities=56%  Similarity=0.881  Sum_probs=191.4

Q ss_pred             CccccccccchHHHHHhhccCCCCC-ccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHH
Q 024844           58 MPLTGVVFQPFEEVKKEVLDVPVSP-LLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKE  136 (261)
Q Consensus        58 ~~~~~~~~~p~~e~~~~~~~~~~~~-~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~  136 (261)
                      +++|||||+||+|||+++.+||++| +.|++||+|+++|+++||+|||.||+|||+|++||+||+++++||+||++||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rq~~~~~v~~~LN~qin~EL~As~~Ylsma~~f~~~d~~l~g~a~~f~~   81 (204)
T 3vnx_A            2 QEVTGMVFQPFSEVQGELSTVTQAPVTDSYARVEYHIECEAAINEQINIEYTISYVYHALHSYFARDNVGLPGFAKFFKE   81 (204)
T ss_dssp             ------CCCHHHHTHHHHHHHHHCCTTSCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHH
T ss_pred             CCCCcceeccHHHHHHHHhcCCCCCCccccceecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHH
Confidence            5799999999999999999999999 679999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHh
Q 024844          137 SSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFV  216 (261)
Q Consensus       137 ~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FL  216 (261)
                      +|+|||+||++||+||++|||+|.+++|.+|..+|++++|++++++|+.+|++|+.+++.|++||++|.+.+|++|++||
T Consensus        82 ~s~EE~~HA~kLi~yi~~rGG~~~l~~i~~p~~~~~~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~lA~~~~D~~t~~fL  161 (204)
T 3vnx_A           82 ASDEEREHAHMLMDYQTKRGGRVELKPLAAPEMEFANDDKGEALYAMELALSLEKLNFQKLQALQAIADKHKDAALCDFV  161 (204)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHhccCCchhhHHhHHhhcCCC
Q 024844          217 ESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGD  259 (261)
Q Consensus       217 e~~FL~EQve~ik~l~~~l~~L~r~g~g~g~ylfD~~L~~~~~  259 (261)
                      ++|||+||+++|++++++|++|+++|+|+|+|+||++|+++++
T Consensus       162 e~~fL~EQve~i~~l~~~l~~l~~~g~~~g~ylfD~~l~~r~~  204 (204)
T 3vnx_A          162 EGGLLSEQVDAVKEHAVYVSQLRRVGKGVGVYLLDQELGEEEA  204 (204)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHhcHHhhcCCC
Confidence            9999999999999999999999999999999999999998864

>3a68_A Sferh-4, ferritin-4, chloroplastic; 4-helix bundle, iron storage, CAGE-like protein, plant, iron, metal-binding, oxidoreductase, plastid; 1.80A {Glycine max} PDB: 3a9q_A

Probab=100.00  E-value=1.5e-61  Score=426.60  Aligned_cols=206  Identities=77%  Similarity=1.157  Sum_probs=191.7

Q ss_pred             CCCCccccccccchHHHHHhhccCCCCCccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHH
Q 024844           55 ANSMPLTGVVFQPFEEVKKEVLDVPVSPLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFF  134 (261)
Q Consensus        55 ~~~~~~~~~~~~p~~e~~~~~~~~~~~~~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF  134 (261)
                      ++++++|||||+||+||++++..+|..+..|++|||++++|+++||+|||.||+|||+|++||+||++++++|+||++||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~rq~~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~~v~l~g~a~~f   84 (212)
T 3a68_A            5 TNHRALTGVIFEPFEEVKKELDLVPTVPQASLARQKYVDESESAVNEQINVEYNVSYVYHAMFAYFDRDNVALRGLAKFF   84 (212)
T ss_dssp             ---------CCCHHHHHTTTTTTSCCSTTSCSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHH
T ss_pred             CCCCCcCceeeecHHHHHHHHhcCcCCCccCcccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcccchHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHH
Q 024844          135 KESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAE  214 (261)
Q Consensus       135 ~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~  214 (261)
                      +++|+|||+||++|++||++|||+|.+++|++|..+|++++|++++++|+.+|++|+.+++.|++|+++|.+.+|++|++
T Consensus        85 ~~~s~EE~~HA~kl~~yi~~rGG~~~l~~i~~p~~~~~~~e~~~~~e~le~aL~~Ek~v~~~l~~l~~~A~~~~D~~t~~  164 (212)
T 3a68_A           85 KESSEEEREHAEKLMEYQNKRGGKVKLQSIVMPLSDFDHADKGDALHAMELALSLEKLTNEKLLNLHSVATKNGDVQLAD  164 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCCCBCCCCCCCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCccCCcCCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHHHHhccCCchhhHHhHHhhcCCCC
Q 024844          215 FVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWHFDQMLLHEGDA  260 (261)
Q Consensus       215 FLe~~FL~EQve~ik~l~~~l~~L~r~g~g~g~ylfD~~L~~~~~~  260 (261)
                      ||++|||+||+++++++++++++|+++|+|+|+|+||++|.+++.+
T Consensus       165 fLe~~fL~EQve~~~~l~~~l~~l~~~g~~~gl~l~D~~l~~~~~~  210 (212)
T 3a68_A          165 FVETEYLGEQVEAIKRISEYVAQLRRVGKGHGVWHFDQMLLHEGGD  210 (212)
T ss_dssp             HHHHHTHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCeehHHhHHHhccCcc
Confidence            9999999999999999999999999999989999999999998764

>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A

Probab=100.00  E-value=2.1e-51  Score=351.81  Aligned_cols=171  Identities=49%  Similarity=0.839  Sum_probs=161.6

Q ss_pred             cchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 024844           84 LSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS  163 (261)
Q Consensus        84 ~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~  163 (261)
                      +|++||||+++|+++||+|||.||+|||+|++||+||++++|||+||++||+++|+|||+||++|++||++|||+|.+++
T Consensus         2 ~~~~rqn~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~   81 (176)
T 3ka8_A            2 VSQVRQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMKYQNKRGGRVVLQD   81 (176)
T ss_dssp             CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCc
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK  243 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~  243 (261)
                      |++|..    .+|++++++|+.+|++|+.+++.|++|+++|.+.+|++|++||+.|||+||+++|++++++|++|+++|+
T Consensus        82 i~~p~~----~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~fl~eQve~~~~l~~~l~~l~~~g~  157 (176)
T 3ka8_A           82 IKKPER----DEWGNTLEAMQAALQLEKTVNQALLDLHKLATDKVDPHLCDFLESEYLEEQVKHIKRIGDFITNLKRLGL  157 (176)
T ss_dssp             CCCCSC----SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999943    2457899999999999999999999999999999999999999955999999999999999999999993


Q ss_pred             ---CchhhHHhHHhhcCC
Q 024844          244 ---GHGLWHFDQMLLHEG  258 (261)
Q Consensus       244 ---g~g~ylfD~~L~~~~  258 (261)
                         |+|+|+||+++++..
T Consensus       158 ~~~~~g~ylfD~~~l~~~  175 (176)
T 3ka8_A          158 PENGMGEYLFDKHSVKES  175 (176)
T ss_dssp             TTCHHHHHHHHHHTCC--
T ss_pred             CCCCccHHHhCHHhhcCC
Confidence               789999999998753

>3kxu_A Ferritin; iron storage protein, disorder, iron, metal binding protein; 1.85A {Homo sapiens} PDB: 3hx2_A 3hx5_A 3hx7_A

Probab=100.00  E-value=3.3e-51  Score=355.62  Aligned_cols=170  Identities=38%  Similarity=0.638  Sum_probs=150.1

Q ss_pred             cchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 024844           84 LSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS  163 (261)
Q Consensus        84 ~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~  163 (261)
                      +|++||||+++|+++||+|||.||+|||+|++||+||++++|||+||++||+++|+|||+||++|++||++|||+|.+++
T Consensus         2 ~s~~rqn~~~~v~~~LN~qin~EL~As~~Ylsma~~f~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~yi~~rgG~~~l~~   81 (191)
T 3kxu_A            2 SSQIRQNYSTDVEAAVNSLVNLYLQASYTYLSLGFYFDRDDVALEGVSHFFRELAEEKREGYERLLKMQNQRGGRALFQD   81 (191)
T ss_dssp             CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-  242 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-  242 (261)
                      |.+|..    .+|++++++|+.+|++|+.+++.|++||++|.+.+|++|++||+.|||+|||++|++++++|++|+++| 
T Consensus        82 i~~p~~----~~~~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe~~fL~EQve~i~~l~~~l~~l~~~g~  157 (191)
T 3kxu_A           82 IKKPAE----DEWGKTPDAMKAAMALEKKLNQALLDLHALGSARTDPHLCDFLETHFLDEEVKLIKKMGDHLTNLHRLGG  157 (191)
T ss_dssp             CCCCSC----SCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999985    245789999999999999999999999999999999999999997799999999999999999999999 


Q ss_pred             --CCchhhHHhH-HhhcC
Q 024844          243 --KGHGLWHFDQ-MLLHE  257 (261)
Q Consensus       243 --~g~g~ylfD~-~L~~~  257 (261)
                        .|+|+|+||+ .|.++
T Consensus       158 ~~~glg~ylfD~~~l~~~  175 (191)
T 3kxu_A          158 PEAGLGEYLSSKGSLSST  175 (191)
T ss_dssp             ------------------
T ss_pred             CCcCcchHhcCHHHHhCc
Confidence              4789999999 66555

>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A

Probab=100.00  E-value=9.4e-50  Score=343.55  Aligned_cols=173  Identities=45%  Similarity=0.731  Sum_probs=162.2

Q ss_pred             CccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee
Q 024844           82 PLLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL  161 (261)
Q Consensus        82 ~~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l  161 (261)
                      +..|++|||++++|+++||+|||.||+|||+|++||+||++++|||+||++||+++|+|||+||++|++||++|||+|.+
T Consensus         4 ~~~s~~rq~~~~~~~~~LN~qi~~El~As~~Yl~~a~~~~~~d~~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l   83 (183)
T 2cih_A            4 ASTSQVRQNYHQDSEAAINRQINLDLYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFL   83 (183)
T ss_dssp             --CCTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             CccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccc
Confidence            34589999999999999999999999999999999999999889999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          162 HSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       162 ~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                      ++|++|..+    +|++++++|+.+|++|+.+++.|++|+++|.+.+|++|++||++|||+||+++++++++++++|+++
T Consensus        84 ~~i~~p~~~----~~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~t~~fLe~~fl~eq~e~~~~l~~~l~~l~~~  159 (183)
T 2cih_A           84 QDIQKPDCD----DWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKM  159 (183)
T ss_dssp             CCCCCCSCS----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999753    3578999999999999999999999999999999999999999779999999999999999999999


Q ss_pred             cC---CchhhHHhHHhhcCC
Q 024844          242 GK---GHGLWHFDQMLLHEG  258 (261)
Q Consensus       242 g~---g~g~ylfD~~L~~~~  258 (261)
                      |.   |+|+|+||++++++.
T Consensus       160 g~~~~~lg~~l~D~~ll~~~  179 (183)
T 2cih_A          160 GAPESGLAEYLFDKHTLGDS  179 (183)
T ss_dssp             TTTTCHHHHHHHHHHTCC--
T ss_pred             CCCCCcchhheeCHHHhcCC
Confidence            93   688999999998864

>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A

Probab=100.00  E-value=3.5e-49  Score=336.64  Aligned_cols=168  Identities=43%  Similarity=0.755  Sum_probs=160.8

Q ss_pred             cchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 024844           84 LSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS  163 (261)
Q Consensus        84 ~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~  163 (261)
                      .|++||||+++|+++||+|||.||+|||+|++||+||+++++||+||++||+++|+|||+||++|++||++|||+|.+++
T Consensus         2 ~~~~rqn~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~   81 (173)
T 1rcd_A            2 ESQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQS   81 (173)
T ss_dssp             -CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCC
Confidence            47899999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             cCCC-CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          164 IMQP-PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       164 I~~P-~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      |++| ..+     |++++++|+.+|++|+.+++.|++++++|.+++|++|++||++|||+||+++++++++++++|+++|
T Consensus        82 i~~p~~~~-----~~~~~e~le~aL~~E~~v~~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~~~l~~~l~~l~~~g  156 (173)
T 1rcd_A           82 VEKPERDD-----WANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLW  156 (173)
T ss_dssp             CCCCSCSC-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999 544     4689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C---CchhhHHhHHhhc
Q 024844          243 K---GHGLWHFDQMLLH  256 (261)
Q Consensus       243 ~---g~g~ylfD~~L~~  256 (261)
                      .   |+|+|+||+++++
T Consensus       157 ~~~~~~g~~~~D~~~l~  173 (173)
T 1rcd_A          157 SSHPGMAEYLFNKHTLG  173 (173)
T ss_dssp             TTCHHHHHHHHHHHTCC
T ss_pred             CCCCCcchhhccHHhcC
Confidence            4   7899999999863

>2v2p_A Ferritin light chain; metal transport, iron, haemin, apoferritin, iron storage, metal-binding; 1.15A {Equus caballus} PDB: 2v2r_A 2v2m_A 2v2l_A 2v2s_A 2v2o_A 2v2n_A 2za6_A 2v2j_A 2v2i_A 2z5p_A 1dat_A 2g4h_A 1aew_A 3h7g_A 2zg9_X 2zg8_X 3fi6_A 3o7r_A 2w0o_A 1hrs_A* ...

Probab=100.00  E-value=1.2e-48  Score=333.50  Aligned_cols=166  Identities=36%  Similarity=0.640  Sum_probs=157.8

Q ss_pred             chhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           85 SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        85 s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      |++||||+++|+++||+|||.||+|||+|++||+||+++++||+||++||+++|+|||+||++|++||++|||+|.+++|
T Consensus         2 ~~~~qn~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~~i~~rgg~~~l~~i   81 (174)
T 2v2p_A            2 SQIRQNYSTEVEAAVNRLVNLYLRASYTYLSLGFYFDRDDVALEGVCHFFRQLAQQKMQGAERLLKMQNQRGGRALFQDL   81 (174)
T ss_dssp             CCSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCC
Confidence            78999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-
Q 024844          165 MQP-PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-  242 (261)
Q Consensus       165 ~~P-~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-  242 (261)
                      ++| ..+     |++++++|+.+|++|+.+++.|++++++|.+.+|++|++||+.|||+||+++++++++++++|+++| 
T Consensus        82 ~~p~~~~-----~~~~~e~le~aL~~Ek~v~~~l~~l~~~a~~~~D~~t~~fLe~~~l~eq~e~~~~l~~~l~~l~~~g~  156 (174)
T 2v2p_A           82 QKPSQDE-----WGTTPDAMKAAIVLEKSLNQALLDLHALGSAQADPHLCDFLESHFLDEEVKLIKKMGDHLTNIQRLVG  156 (174)
T ss_dssp             CCCSCSC-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccc-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999 554     4679999999999999999999999999999999999999993399999999999999999999999 


Q ss_pred             C--CchhhHHhH-Hhh
Q 024844          243 K--GHGLWHFDQ-MLL  255 (261)
Q Consensus       243 ~--g~g~ylfD~-~L~  255 (261)
                      +  |+|+|+||+ .|.
T Consensus       157 ~~~~~g~~l~D~~~l~  172 (174)
T 2v2p_A          157 SQAGLGEYLFERLTLK  172 (174)
T ss_dssp             HCHHHHHHHHHHHTC-
T ss_pred             CCCcceeeeecHHHhC
Confidence            3  789999999 553

>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1

Probab=100.00  E-value=4.5e-48  Score=340.69  Aligned_cols=189  Identities=22%  Similarity=0.307  Sum_probs=170.5

Q ss_pred             HHHHHhhccCCCCC-----ccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHH
Q 024844           69 EEVKKEVLDVPVSP-----LLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEERE  143 (261)
Q Consensus        69 ~e~~~~~~~~~~~~-----~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEre  143 (261)
                      ..|...|..+|.+.     .....+.+.+++|+++||+|||.||+|||+|++||+||+++++|||||++||+++|+|||+
T Consensus         6 ~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~v~~~LN~qin~El~As~~Yl~ma~~f~~dd~~l~gfa~~f~~~s~EE~~   85 (212)
T 1z6o_A            6 NDVALDCGITSNSLALPRCNAVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWS   85 (212)
T ss_dssp             HHHHHHTSTTCSCCCCTTCSSCCTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence            46666666554211     2234566899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCeeeecccCCCC-CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----ChhHHHHhHH
Q 024844          144 HAEKFMEYQNLRGGKVKLHSIMQPP-SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNN----DPQMAEFVES  218 (261)
Q Consensus       144 HAekLi~Y~n~RGG~v~l~~I~~P~-~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~----D~~t~~FLe~  218 (261)
                      ||++||+||++|||+|.+++|++|. .+|.+.+|.+++++|+.+|++|+.+++.|++||++|.+++    |+++++||++
T Consensus        86 HA~kli~yi~~rGg~~~l~~i~~p~~~~~~~~~~~~~~e~le~aL~~Ek~vt~~l~~l~~~a~~~~~~~~D~~t~~fLe~  165 (212)
T 1z6o_A           86 KTIDIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRNSQHLHDPEIAQYLEE  165 (212)
T ss_dssp             HHHHHHHHHHHTTCCCCTTCCCCSCCCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCccccccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence            9999999999999999999999996 6676655557999999999999999999999999999999    9999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHhcc-C------CchhhHHhHHhhcC
Q 024844          219 EFLGEQVEAINKIAKYVSQLRMVG-K------GHGLWHFDQMLLHE  257 (261)
Q Consensus       219 ~FL~EQve~ik~l~~~l~~L~r~g-~------g~g~ylfD~~L~~~  257 (261)
                      |||+||++.|+++++++++|+++| .      |+|+|+||++|.+.
T Consensus       166 ~fleeQve~i~~l~~~l~~L~~~~~~~~~~~~~~g~ylfD~~L~~~  211 (212)
T 1z6o_A          166 EFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYLQKT  211 (212)
T ss_dssp             HTHHHHHHHHHHHHHHHHHHHHHHHGGGGTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCcchHHHHHHHHHhc
Confidence            999999999999999999999998 3      68999999999764

>1z6o_M Ferritin heavy chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1

Probab=100.00  E-value=2.9e-47  Score=330.19  Aligned_cols=172  Identities=27%  Similarity=0.420  Sum_probs=161.3

Q ss_pred             ccchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee---
Q 024844           83 LLSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV---  159 (261)
Q Consensus        83 ~~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v---  159 (261)
                      ..|++||+++++|+++||+|||.||+|||+|++||+||+++++|||||++||+++|+|||+||++|++||++|||+|   
T Consensus         9 ~~~~~~~~~~~~~~~~LN~qin~El~As~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~HA~kli~yi~~rGg~~~~~   88 (191)
T 1z6o_M            9 QIPKDWITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDV   88 (191)
T ss_dssp             CCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred             cCcHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchh
Confidence            34889999999999999999999999999999999999998899999999999999999999999999999999999   


Q ss_pred             -eecccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          160 -KLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN---NDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       160 -~l~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~---~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                       .+++|++|..    .+|++++++|+.+|++|+.+++.|++|+++|.+.   +|+++++||+++||+||+++++++++++
T Consensus        89 ~~l~~i~~p~~----~~~~~~~e~le~aL~~Ek~v~~~i~~l~~~a~~~~D~~d~~~~d~Le~~fl~EQve~~~~l~~~i  164 (191)
T 1z6o_M           89 SSLLQVRPPTR----SSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKA  164 (191)
T ss_dssp             GGGCCCCCCSC----CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             hhhhcCCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             9999999964    2457899999999999999999999999999998   9999999999559999999999999999


Q ss_pred             HHHHhccC---CchhhHHhHHhhcCC
Q 024844          236 SQLRMVGK---GHGLWHFDQMLLHEG  258 (261)
Q Consensus       236 ~~L~r~g~---g~g~ylfD~~L~~~~  258 (261)
                      ++++++++   |+|+|+||++|++.+
T Consensus       165 ~~l~k~~~~~~~~g~~lfD~~l~~~~  190 (191)
T 1z6o_M          165 STLKKLMDRHEALGEFIFDKKLLGID  190 (191)
T ss_dssp             HHHHTTTTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCcccchhhhhHHhhcCC
Confidence            99988863   569999999998753

>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A

Probab=100.00  E-value=2.6e-46  Score=318.23  Aligned_cols=160  Identities=26%  Similarity=0.354  Sum_probs=148.4

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF  171 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f  171 (261)
                      +++|+++||+|||.||+|||+|++||+||+++  +|+||++||+++|+|||+||++|++||++|||+|.+++|++|..  
T Consensus         2 ~~~v~~~LN~qin~El~As~~Yl~ma~~f~~~--~l~g~a~~f~~~s~EE~~HA~kl~~~i~~rgg~~~l~~i~~p~~--   77 (168)
T 3e6s_A            2 SEELLDLFNRQVTQEFTASQVYLSASIWFDQN--DWEGMAAYMLAESAEEREHGLGFVDFANKRNIPIELQAVPAPVS--   77 (168)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCG--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcCCCCc--
Confidence            68999999999999999999999999999965  79999999999999999999999999999999999999999981  


Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhHH
Q 024844          172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWHF  250 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~ylf  250 (261)
                       ..+|++++++|+.+|++|+.+++.|++|+++|.+.+||+|++||+ |||+||+++++++++++++|+++| ++.|+|+|
T Consensus        78 -~~~~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe-~fl~eQve~~~~l~~~l~~l~~~g~~~~~l~~~  155 (168)
T 3e6s_A           78 -CAEWSSPEDVWQSILELEQANTRSLLNLAEAASTCHDFAVMAFLN-PFHLQQVNEEDKIGSILAKVTDENRTPGLLRSL  155 (168)
T ss_dssp             -GGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHH
T ss_pred             -cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcCeeeee
Confidence             123568999999999999999999999999999999999999999 999999999999999999999999 57899999


Q ss_pred             h--HHhhcC
Q 024844          251 D--QMLLHE  257 (261)
Q Consensus       251 D--~~L~~~  257 (261)
                      |  ++|+.+
T Consensus       156 D~~~el~~~  164 (168)
T 3e6s_A          156 DVVSFLGPC  164 (168)
T ss_dssp             HHSCC----
T ss_pred             ccHHHHHHH
Confidence            9  999875

>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A

Probab=100.00  E-value=4.4e-45  Score=311.50  Aligned_cols=160  Identities=30%  Similarity=0.500  Sum_probs=154.2

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      .++++|+++||+|||.|++|+|+|++||+||+  ++||+||++||+++|+|||+||++|++||++|||+|.+++|++|..
T Consensus         3 m~~~~v~~~LN~qi~~El~as~~Yl~~a~~~~--~~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~gg~~~l~~i~~p~~   80 (173)
T 1s3q_A            3 SISEKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPS   80 (173)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCC
Confidence            37899999999999999999999999999999  5899999999999999999999999999999999999999999976


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhh
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLW  248 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~y  248 (261)
                      +|     ++++++|+.+|++|+.+++.|++++++|.+.+|++|++||+ |||+||+++++++++++++|+++| +|+|+|
T Consensus        81 ~~-----~~~~e~le~aL~~E~~v~~~~~~l~~~a~~~~D~~t~~fle-~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~  154 (173)
T 1s3q_A           81 EW-----DSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFLQ-WYVAEQVEEEASALDIVEKLRLIGEDKRALL  154 (173)
T ss_dssp             CC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHh
Confidence            54     57899999999999999999999999999999999999999 999999999999999999999999 689999


Q ss_pred             HHhHHhhcC
Q 024844          249 HFDQMLLHE  257 (261)
Q Consensus       249 lfD~~L~~~  257 (261)
                      +||++|.++
T Consensus       155 ~~D~~l~~~  163 (173)
T 1s3q_A          155 FLDKELSLR  163 (173)
T ss_dssp             HHHHHHTTC
T ss_pred             HHhHHHhhc
Confidence            999999887

>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1

Probab=100.00  E-value=8.3e-45  Score=313.10  Aligned_cols=161  Identities=22%  Similarity=0.334  Sum_probs=155.1

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      .++++|+++||+|||.||.++|+|++||+||+  +++|+||++||+++|+|||+||++|++||++|||+|.+++|++|..
T Consensus        10 m~~~~v~~~LN~qin~EL~as~~Yl~~a~~f~--~~~l~g~a~~f~~~a~EE~~HA~~l~~~i~~~Gg~~~l~~i~~p~~   87 (184)
T 3qz3_A           10 MLSQAMVEHLNEQINLEFFSSNLYLQMSAWCE--DKGFDGAAEFLRAHAVEEMQHMQRLFTYVSETGALPILGAIAAPRH   87 (184)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             ecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccCCCCCccc
Confidence            58999999999999999999999999999999  7999999999999999999999999999999999999999999975


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhh
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLW  248 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~y  248 (261)
                      +     |++++++|+.+|++|+.+++.|++|+++|.+.+|++|++||+ |||+||+++++++++++++|+++| +|+|+|
T Consensus        88 ~-----~~~~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe-~fl~EQve~~~~l~~~l~~l~~~g~~~~~~~  161 (184)
T 3qz3_A           88 D-----FASLGEVFRETYQHEQKITQQINKLAHVAFTSQDYSTFNFLQ-WYVAEQHEEEKLFKGILDKLELVGEDGKALF  161 (184)
T ss_dssp             C-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCSSHHHHH
T ss_pred             C-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCcchh
Confidence            4     467899999999999999999999999999999999999999 999999999999999999999999 689999


Q ss_pred             HHhHHhhcCC
Q 024844          249 HFDQMLLHEG  258 (261)
Q Consensus       249 lfD~~L~~~~  258 (261)
                      +||++|+++.
T Consensus       162 ~~D~~l~~~~  171 (184)
T 3qz3_A          162 FIDKDLAALA  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHhHHHhhhh
Confidence            9999998863

>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1

Probab=100.00  E-value=7.4e-44  Score=300.62  Aligned_cols=160  Identities=23%  Similarity=0.390  Sum_probs=154.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+|||.|++|+|+|++||+||+  ++|+|||++||+++|+|||+||++|++||++|||+|.+++|++|..+
T Consensus         2 ~~~~~~~~LN~~i~~El~A~~~Yl~~a~~~~--~~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~l~~i~~p~~~   79 (165)
T 1eum_A            2 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCS--YHTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE   79 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCC
Confidence            7899999999999999999999999999999  58999999999999999999999999999999999999999999875


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     ++++++|+.+|++|+.+++.|++++++|.+++|+++++||+ |||+||+++++++++++++|+++| +|+|+|+
T Consensus        80 ~-----~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~~~~fl~-~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~  153 (165)
T 1eum_A           80 Y-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYF  153 (165)
T ss_dssp             C-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhH
Confidence            4     57899999999999999999999999999999999999999 999999999999999999999999 6899999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      ||++|.++.
T Consensus       154 ~D~~l~~~~  162 (165)
T 1eum_A          154 IDKELSTLD  162 (165)
T ss_dssp             HHHHHHHCC
T ss_pred             HhHHHHhhh
Confidence            999998873

>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1

Probab=100.00  E-value=9.9e-43  Score=294.51  Aligned_cols=159  Identities=25%  Similarity=0.388  Sum_probs=152.9

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+|||.|++|+|+|++||+||+  ++|++||++||+.+|+|||+||++|++||++|||.|.+++|++|..+
T Consensus         2 ~~~~~~~~Ln~~i~~El~A~~~Yl~~a~~~~--~~gl~~~a~~f~~~a~eE~~HA~~l~~~i~~~gG~~~l~~i~~p~~~   79 (167)
T 1krq_A            2 LSKEVVKLLNEQINKEMYAANLYLSMSSWCY--ENSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQN   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCCC
Confidence            6899999999999999999999999999999  47999999999999999999999999999999999999999999755


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     ++++++|+.+|++|+.+++.|++++++|.+++|+++++||+ |||.||+++++++++++++|+++| +|+|+|+
T Consensus        80 ~-----~~~~e~l~~al~~E~~~~~~~~~l~~~a~~~~D~~~~~~l~-~~l~Eq~e~~~~l~~~l~~l~~~g~~~~g~~~  153 (167)
T 1krq_A           80 F-----KSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYL  153 (167)
T ss_dssp             C-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHCSTTTHHHH
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHhH
Confidence            4     67899999999999999999999999999999999999999 899999999999999999999999 6899999


Q ss_pred             HhHHhhcC
Q 024844          250 FDQMLLHE  257 (261)
Q Consensus       250 fD~~L~~~  257 (261)
                      ||++|.++
T Consensus       154 ~D~~l~~~  161 (167)
T 1krq_A          154 ADQYIKNI  161 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HhHHHHhc
Confidence            99999876

>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A

Probab=100.00  E-value=4.4e-42  Score=297.62  Aligned_cols=157  Identities=26%  Similarity=0.311  Sum_probs=147.7

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      .++++|+++||+|||.|++|||+|++||+||++  ++|+||++||+++|+|||+||++|++||++|||+|.+++|.+|..
T Consensus         6 ~~~~~v~~~LN~qi~~El~As~~Yl~~a~~f~~--~~l~g~a~~f~~~A~EE~~HA~~l~~~i~~rGG~~~l~~i~~p~~   83 (189)
T 3uno_A            6 GPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRN   83 (189)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCCCc
Confidence            588999999999999999999999999999995  589999999999999999999999999999999999999999976


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC---Cch
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK---GHG  246 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~---g~g  246 (261)
                      +|     ++++++|+.+|++|+.+++.|++|+++|.+++|++|++||+ |||+||++++++++++|++|+++|.   +.+
T Consensus        84 ~~-----~s~~e~le~aL~~Ek~v~~~l~~l~~la~~~~D~~t~~fLe-~fL~EQve~~~~l~~~l~~l~~~g~~~~~l~  157 (189)
T 3uno_A           84 QF-----DRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGANLFELE  157 (189)
T ss_dssp             CC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            54     67899999999999999999999999999999999999999 9999999999999999999999984   477


Q ss_pred             hhHHhHHh
Q 024844          247 LWHFDQML  254 (261)
Q Consensus       247 ~ylfD~~L  254 (261)
                      .|+||+..
T Consensus       158 ~yL~~~~~  165 (189)
T 3uno_A          158 NFVAREVD  165 (189)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHhc
Confidence            89999876

>1vlg_A Ferritin; TM1128, structural genomics, JCSG, protein structu initiative, PSI, joint center for structural genomics, META protein; 2.00A {Thermotoga maritima} SCOP: a.25.1.1 PDB: 1z4a_A*

Probab=100.00  E-value=2.6e-39  Score=275.22  Aligned_cols=162  Identities=29%  Similarity=0.505  Sum_probs=155.1

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++++++|+++||+||+.|+.++|+|++||.||+  +++++||++||+++|+||++||++|++||+.|||.|.+++|+.|+
T Consensus        14 ~~~~~~~~~~Ln~~l~~El~a~~~Yl~~a~~~~--~~~~~~la~~f~~~a~EE~~HAd~l~eri~~lGg~~~l~~i~~p~   91 (176)
T 1vlg_A           14 MVISEKVRKALNDQLNREIYSSYLYLSMATYFD--AEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPP   91 (176)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCC
Confidence            579999999999999999999999999999999  579999999999999999999999999999999999999999997


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchh
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGL  247 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~  247 (261)
                      .+|     +++.++|+.+|++|+.+++.|++++++|.+++|+.|++||+ |||.||+++++++++++++|+++| +|.|+
T Consensus        92 ~~~-----~~~~e~le~~l~~E~~v~~~~~~l~~~A~~~~D~~t~~~l~-~~l~eq~ee~~~l~~~l~~l~~~g~~~~g~  165 (176)
T 1vlg_A           92 SNW-----NGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLK-WFVDEQVEEEDQVREILDLLEKANGQMSVI  165 (176)
T ss_dssp             CCC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccch
Confidence            654     57899999999999999999999999999999999999999 999999999999999999999999 67899


Q ss_pred             hHHhHHhhcCC
Q 024844          248 WHFDQMLLHEG  258 (261)
Q Consensus       248 ylfD~~L~~~~  258 (261)
                      |+||++|.+++
T Consensus       166 ~~~D~~l~~~~  176 (176)
T 1vlg_A          166 FQLDRYLGQRE  176 (176)
T ss_dssp             HHHHHHHTTCC
T ss_pred             hhhhHHhhcCC
Confidence            99999998763

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0

Probab=100.00  E-value=1.1e-36  Score=257.17  Aligned_cols=159  Identities=32%  Similarity=0.537  Sum_probs=152.3

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+||+.|+.++|+|++|++||+  +++++|+++||+++|+||++||++|++||+.|||+|.+++|+.|..+
T Consensus         2 ~~~~~~~~Ln~~l~~El~a~~~Yl~~a~~~~--~~~~~~l~~~f~~~a~ee~~had~laeri~~lGg~p~~~~i~~~~~~   79 (174)
T 2jd6_0            2 LSERMLKALNDQLNRELYSAYLYFAMAAYFE--DLGLEGFANWMKAQAEEEIGHALRFYNYIYDRNGRVELDEIPKPPKE   79 (174)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCcC
Confidence            5789999999999999999999999999998  57999999999999999999999999999999999999999999765


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     .++.++|+.++++|+.+++.|++++++|.+++|+.|++||+ ||+.+|+++++++++++++|+++| +|.|+|+
T Consensus        80 ~-----~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~-~~l~eq~e~~~~l~~~l~~l~~~g~~~~g~~~  153 (174)
T 2jd6_0           80 W-----ESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLE-WFINEQVEEEASVKKILDKLKFAKDSPQILFM  153 (174)
T ss_dssp             C-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             c-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCccchhh
Confidence            4     57899999999999999999999999999999999999999 999999999999999999999999 6789999


Q ss_pred             HhHHhhcC
Q 024844          250 FDQMLLHE  257 (261)
Q Consensus       250 fD~~L~~~  257 (261)
                      ||++|.++
T Consensus       154 ~d~~l~~~  161 (174)
T 2jd6_0          154 LDKELSAR  161 (174)
T ss_dssp             HHHHHTTC
T ss_pred             hhHHHhhc
Confidence            99999887

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=100.00  E-value=5.1e-34  Score=238.38  Aligned_cols=144  Identities=19%  Similarity=0.235  Sum_probs=137.9

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.+++++++||+||+.|++|+++|++||.||+  ++|++|+++||+++|.||++||++|++|++.|||.|.++++++|..
T Consensus         2 k~~~kvi~~LN~~l~~El~A~~~Y~~~a~~~~--~~g~~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~~~   79 (159)
T 4am5_A            2 KGDQKVIEYLNRGLRSELTAVSQYWLHYRMLE--DWGYKDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPLRI   79 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccccc
Confidence            46899999999999999999999999999998  7899999999999999999999999999999999999999976653


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                            +.++.++++.+|.+|+.+++.|++++++|.+.+|+.|++||+ ||+.+|++|++++.++++.++++|
T Consensus        80 ------~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~il~eEeeH~~~l~~~L~~i~~~G  145 (159)
T 4am5_A           80 ------GQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFE-ELMGDEEHHIDFLETQLDLVSKLG  145 (159)
T ss_dssp             ------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  257899999999999999999999999999999999999999 999999999999999999999998

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A

Probab=100.00  E-value=3.2e-33  Score=240.07  Aligned_cols=159  Identities=27%  Similarity=0.362  Sum_probs=149.5

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      .+++++++.||+||+.|+.++|+|+.|++||+  .+|++||++||+++|+||++||++|++||+.|||.|.++.|+.|..
T Consensus         6 m~~~~v~~~LN~~la~El~a~~~Yl~~a~~~~--~~gf~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~~~   83 (189)
T 3oj5_A            6 GPKTKFHALMQEQIHNEFTAAQQYVAIAVYFD--SEDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVRN   83 (189)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCCCC
Confidence            47889999999999999999999999999998  4589999999999999999999999999999999999999999976


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWH  249 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~g~g~yl  249 (261)
                      +|     .++.++|+.++++|+.+++.|++++++|.+++|+.|++||+ ||+++|+++++++++++++|+++|++  +|+
T Consensus        84 ~~-----~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~-~~l~eqe~~~~~l~~~l~~l~~~g~~--l~~  155 (189)
T 3oj5_A           84 QF-----DRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGAN--LFE  155 (189)
T ss_dssp             CC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTC--HHH
T ss_pred             CC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCch--HhH
Confidence            54     57899999999999999999999999999999999999999 99999999999999999999999964  999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      +|++|.++.
T Consensus       156 ~d~~l~~~~  164 (189)
T 3oj5_A          156 LENFVAREV  164 (189)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998764

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=99.96  E-value=4.8e-28  Score=200.49  Aligned_cols=144  Identities=19%  Similarity=0.182  Sum_probs=137.3

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +-++++++.||+||+.|+.+++.|++|+.||+  +++++++++||+++++||++||++|++|++.+||.|.++.+.+|+.
T Consensus         4 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~~   81 (161)
T 3uoi_A            4 QGDPDVLRLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLRI   81 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCCC
Confidence            45889999999999999999999999999998  7899999999999999999999999999999999999988877765


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      .++.++|+.++++|+.+++.|++++++|.+.+|+.|++||+ ||+.++.+++.++..++..++++|
T Consensus        82 ~------~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~-~~~~eee~h~~~l~~~l~~i~~~g  147 (161)
T 3uoi_A           82 G------QTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLE-KIVADEEEHIDYLETQLELMDKLG  147 (161)
T ss_dssp             C------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3      47899999999999999999999999999999999999999 999999999999999999999997

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=99.96  E-value=6.2e-28  Score=198.72  Aligned_cols=143  Identities=14%  Similarity=0.155  Sum_probs=134.1

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||+||+.|+.+++.|++|+.||+  +++++|+++||+++++||++||++|++|++.+||.|.+ ++.++. 
T Consensus         2 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~had~l~eri~~lGg~p~~-~~~~~~-   77 (154)
T 3r2k_A            2 QGHPEVIDYLNTLLTGELAARDQYFIHSRMYE--DWGFSKLYERLNHEMEEETQHADALLRRILLLEGTPRM-RPDDIH-   77 (154)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCCCCC-
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCC-
Confidence            45789999999999999999999999999998  78999999999999999999999999999999999998 666332 


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHH-HHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGE-QVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~E-Qve~ik~l~~~l~~L~r~g  242 (261)
                       +    ..++.++|+.++.+|+.+++.|++++++|.+.+|+.|++||+ ||+.+ +.+++.++..++..++++|
T Consensus        78 -~----~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~~~e~ee~h~~~l~~~l~~i~~~g  145 (154)
T 3r2k_A           78 -P----GTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILK-AQLADTEEDHAYWLEQQLGLIARMG  145 (154)
T ss_dssp             -C----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHC
T ss_pred             -C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
Confidence             1    147899999999999999999999999999999999999999 99999 9999999999999999998

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=99.96  E-value=1.8e-27  Score=195.48  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=141.2

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||++|+.|+.+++.|+.|+.+|+  +++++++++||+++|+||++||++|++|++.+||.|.+..+.+|+.
T Consensus         2 ~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~   79 (158)
T 2y3q_A            2 KGDTKVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLNI   79 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCC
Confidence            46889999999999999999999999999999  6799999999999999999999999999999999999988887765


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWH  249 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~g~g~yl  249 (261)
                      +      .++.++++.++++|+.++..|++++++|.+.+|+.+++||+ +|+.+|++++.++..++..++++|  ...|+
T Consensus        80 ~------~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~-~~~~ee~~h~~~l~~~l~~l~~~g--~~~y~  150 (158)
T 2y3q_A           80 G------EDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMI-EILRDEEGHIDWLETELDLIQKMG--LQNYL  150 (158)
T ss_dssp             C------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC--HHHHH
Confidence            3      47899999999999999999999999999999999999999 999999999999999999999997  34555


Q ss_pred             HhH
Q 024844          250 FDQ  252 (261)
Q Consensus       250 fD~  252 (261)
                      +-+
T Consensus       151 ~~~  153 (158)
T 2y3q_A          151 QAQ  153 (158)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            543

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=99.96  E-value=2.6e-27  Score=195.11  Aligned_cols=153  Identities=15%  Similarity=0.125  Sum_probs=143.1

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||.+|+.|+.+++.|+.|+.+|+  +++++++++||+.+++||++||++|++|++.+||.|.+..+.+|+.
T Consensus         2 ~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~~   79 (161)
T 1jgc_A            2 KGDAKVIEFLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLRI   79 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCCC
Confidence            35788999999999999999999999999999  6799999999999999999999999999999999999988887764


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccCCchhhH
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLWH  249 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~g~g~yl  249 (261)
                      .      .++.++++.++.+|+.++..|++++++|.+.+|+.+++||+ ||+.+|++++.++.+++.+++++|  .+.|+
T Consensus        80 ~------~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~~~ee~~h~~~l~~~l~~l~~~g--~~~yl  150 (161)
T 1jgc_A           80 G------EGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFE-SLITDEEGHVDFLETQISLYDRLG--PQGFA  150 (161)
T ss_dssp             C------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC--HHHHH
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC--HHHHH
Confidence            3      36899999999999999999999999999999999999999 999999999999999999999997  56788


Q ss_pred             HhHH
Q 024844          250 FDQM  253 (261)
Q Consensus       250 fD~~  253 (261)
                      +++.
T Consensus       151 ~~~~  154 (161)
T 1jgc_A          151 LLNA  154 (161)
T ss_dssp             HHTC
T ss_pred             HHHc
Confidence            7765

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=99.95  E-value=3.3e-27  Score=198.25  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=145.0

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++.++++++.||.+|+.|+.+++.|+.++.+|+  +++++++++||+.+|+||++||++|++|++.+||.|.+..|+.|+
T Consensus         3 m~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~~   80 (174)
T 3qb9_A            3 MQGDPDVLRLLNEQLTSELTAINQYFLHSKMQD--NWGFTELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLR   80 (174)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCCC
Confidence            467889999999999999999999999999999  679999999999999999999999999999999999999888776


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGHGLW  248 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~g~g~y  248 (261)
                      .      |.++.++++.+++.|+.+++.|++++++|.+.+|+.+++||+ ||+.++.+++.++.+++..+++.|  .+.|
T Consensus        81 ~------~~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~-~~l~eEe~h~~~l~~~l~~i~~~g--~~~y  151 (174)
T 3qb9_A           81 I------GQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLE-KIVADEEEHIDYLETQLELMDKLG--EELY  151 (174)
T ss_dssp             C------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC--HHHH
T ss_pred             C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcC--HHHH
Confidence            4      257899999999999999999999999999999999999999 999999999999999999999976  7889


Q ss_pred             HHhHH
Q 024844          249 HFDQM  253 (261)
Q Consensus       249 lfD~~  253 (261)
                      ++++.
T Consensus       152 l~~~~  156 (174)
T 3qb9_A          152 SAQCV  156 (174)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            88887

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}

Probab=99.95  E-value=7.9e-27  Score=199.10  Aligned_cols=145  Identities=20%  Similarity=0.222  Sum_probs=137.8

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++.++++++.||+||+.|+.+++.|++|+.||+  +++++++++||+++++||++||++|++|++.+||.|.++++.+|.
T Consensus        22 M~~~~~~~~~LN~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~~~   99 (182)
T 3fvb_A           22 MKGEPKVIERLNEALFLELGAVNQYWLHYRLLN--DWGYTRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSPLR   99 (182)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCCCC
Confidence            457999999999999999999999999999998  789999999999999999999999999999999999998787775


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .+      .++.++|+.++++|+.+++.|++++++|.+.+|+.|++||+ ||+.++.+++.++..++..++++|
T Consensus       100 ~~------~~~~e~l~~~l~~E~~~~~~y~~~i~~A~~~~D~~t~~~L~-~il~eEe~h~~~l~~~l~~i~~~g  166 (182)
T 3fvb_A          100 IG------QNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFD-ELLADEEGHIDFLETQLDLLAKIG  166 (182)
T ss_dssp             CC------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            43      47899999999999999999999999999999999999999 999999999999999999999997

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1

Probab=99.95  E-value=1.1e-26  Score=192.47  Aligned_cols=144  Identities=15%  Similarity=0.208  Sum_probs=136.0

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||++|+.|+.++++|+.|+.+|+  +++++++++||+++++||++||++|++|++.+||.|.++.+.+|..
T Consensus         2 ~~~~~~~~~Ln~~la~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~~~~~~   79 (161)
T 3gvy_A            2 QGDAKVIEYLNAALRSELTAVSQYWLHYRLQE--DWGFGSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRLNPLRI   79 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCCCCCCC
Confidence            45789999999999999999999999999998  6799999999999999999999999999999999999987776653


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      .++.++|+.++.+|+.+++.|++++++|.+.+|+.|++||+ ||+.++.+++.++...+..++++|
T Consensus        80 ~------~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~-~~~~eEe~h~~~l~~~l~~i~~~g  145 (161)
T 3gvy_A           80 G------QTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFE-ELIADEEGHIDYLETQIDLMGSIG  145 (161)
T ss_dssp             C------SSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcC
Confidence            1      57899999999999999999999999999999999999999 999999999999999999999987

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=99.95  E-value=4.2e-26  Score=186.23  Aligned_cols=144  Identities=17%  Similarity=0.182  Sum_probs=136.0

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.++++++.||.+++.|+.+++.|+.++.+++  ++++++++.||++++.||++||++|++|++.+||.|.+..+.+|+.
T Consensus         2 ~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~~~   79 (155)
T 2fkz_A            2 KGDKIVIQHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLI   79 (155)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence            45789999999999999999999999999998  6799999999999999999999999999999999999887776654


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      .++.++++.++.+|+.++..|++++++|.+.+|+.|++||+ |++.++.+++.++..++..++++|
T Consensus        80 ~------~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~~~eee~h~~~l~~~l~~i~~~g  145 (155)
T 2fkz_A           80 G------EHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLE-DILESEEDHIDWLETQLDLIDKIG  145 (155)
T ss_dssp             C------SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence            2      36899999999999999999999999999999999999999 999999999999999999999998

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=99.94  E-value=3.1e-26  Score=193.38  Aligned_cols=148  Identities=18%  Similarity=0.172  Sum_probs=140.5

Q ss_pred             hcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC
Q 024844           87 ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ  166 (261)
Q Consensus        87 aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~  166 (261)
                      +|++.++++++.||.+|+.|+.+++.|+.|+.+|+  +++++++++||+.++.||++||++|++|++.+||.|.+..+..
T Consensus         4 ~~~~~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~   81 (179)
T 1nfv_A            4 NREDRKAKVIEVLNKARAMELHAIHQYMNQHYSLD--DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGK   81 (179)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTBHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSC
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCc
Confidence            58899999999999999999999999999999999  5799999999999999999999999999999999999988877


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK  243 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~  243 (261)
                      |..+      .++.++++.++.+|+.++..|++++++|.+.+|+.+.+||+ ||+.++.+++.++..++..|+++|.
T Consensus        82 ~~~~------~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~-~~~~eEe~h~~~l~~~l~~l~~~g~  151 (179)
T 1nfv_A           82 VVTG------QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFE-RIIEEEQAHLTYYENIGSHIKNLGD  151 (179)
T ss_dssp             CCCS------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCH
Confidence            6542      36899999999999999999999999999999999999999 9999999999999999999999973

>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}

Probab=99.94  E-value=3.5e-26  Score=190.25  Aligned_cols=148  Identities=16%  Similarity=0.196  Sum_probs=133.5

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc---cCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS---IMQ  166 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~---I~~  166 (261)
                      ..++++++.||+||+.|+.+++.|+.|+.+|+  +++++++++||.++|+||++||++|++|++.+||.|.+..   +..
T Consensus        13 m~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Had~lae~i~~lGg~p~~~~~~~~~~   90 (170)
T 2vzb_A           13 LDVKSLIDQLNAALSEEWLAYYQYWVGALVVE--GAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWFEL   90 (170)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHh
Confidence            36789999999999999999999999999998  6899999999999999999999999999999999999877   554


Q ss_pred             CCCCCC-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          167 PPSEFD-HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       167 P~~~f~-~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      +...+. ..+| ++.++++.++++|+.+++.|++++++|.+. |+.|++||+ ||+.+|++++.++.+++++++++|
T Consensus        91 ~~~~~~~~~~~-~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~-D~~t~~~l~-~~~~ee~~h~~~l~~~l~~l~~~g  164 (170)
T 2vzb_A           91 ARCKYDSPTAF-DSVSLLNQNVSSERCAILRYQEIANFTNGK-DYTTCDIAK-HILAEEEEHEQDLQDYLTDIARMK  164 (170)
T ss_dssp             CSSCCCCCCSC-BHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322211 1123 489999999999999999999999999777 999999999 999999999999999999999998

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=99.94  E-value=4.2e-26  Score=197.51  Aligned_cols=137  Identities=15%  Similarity=0.234  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      +++++.||+|++.|++|++.|++||.|+++  .|++|+|+||+.+|.+|+.||+++++|++  ||.|.++.+. |...| 
T Consensus         7 ~~t~~~Ln~a~~~E~~A~~~Yl~~A~~a~~--~G~~~iA~~f~~~A~eE~~HA~~~~~~l~--gg~~~i~~~~-p~~~~-   80 (191)
T 1lko_A            7 SRTEKNILTAFAGESQARNRYNYFGGQAKK--DGFVQISDIFAETADQEREHAKRLFKFLE--GGDLEIVAAF-PAGII-   80 (191)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHCC--SSCCCCCCCC-CCCCC-
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCccccCcC-Ccccc-
Confidence            378999999999999999999999999995  59999999999999999999999999999  9999998844 65444 


Q ss_pred             ccccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          173 HAEKGDALYAMELALSLE-KLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lE-k~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                          ++..+.|+.++++| +.+++.|.+++++|.+++|+.+.+||+ ||+++|++|++.+.+++++|+.
T Consensus        81 ----~s~~e~l~~al~~E~~e~t~~y~~~~~~A~eegd~~~~~~f~-~~~~~E~ehe~~~~~~l~~l~~  144 (191)
T 1lko_A           81 ----ADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFA-SIAVAEEFHEKRFLDFARNIKE  144 (191)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhc
Confidence                57899999999999 999999999999999999999999999 9999999999999999999986

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=99.92  E-value=5.8e-24  Score=175.19  Aligned_cols=133  Identities=17%  Similarity=0.180  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH--cCCeeeecccCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL--RGGKVKLHSIMQPPSE  170 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~--RGG~v~l~~I~~P~~~  170 (261)
                      +++++.||+|++.|+.|+++|+.||.||+  ++|++++++||+.+|.+|+.||.++++|++.  +|+ |   ++..|   
T Consensus         7 ~~~~~~Ln~a~~~E~~A~~~Y~~~A~~a~--~~g~~~~a~~f~~~A~eE~~HA~~~~~~l~~~~lg~-p---~~~~p---   77 (144)
T 1j30_A            7 TKTAENLKQGFIGESMANRRYLYFAKRAD--EEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTD-P---ATDKP---   77 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBC-T---TTSCB---
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC-C---CcCCC---
Confidence            35999999999999999999999999999  6799999999999999999999999999999  855 3   23333   


Q ss_pred             CCccccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          171 FDHAEKGDALYAMELALSLEKLT-NEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~v-t~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                           ++++.++|+.++++|+.+ +..|.+++++|.+++|+.+.++++ ++++++.+|++++.+++..++.
T Consensus        78 -----~~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~-~i~~~E~~H~~~~~~~l~~i~~  142 (144)
T 1j30_A           78 -----IGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFE-TLARAEKSHAEKFQNVLKQLKG  142 (144)
T ss_dssp             -----CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC
Confidence                 257899999999999999 899999999999999999999999 9999999999999999998863

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=99.92  E-value=1.2e-23  Score=170.45  Aligned_cols=137  Identities=18%  Similarity=0.205  Sum_probs=126.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      .++++++.||++++.|+.+++.|+.++.+++  +.+++++++||..++.||++|+++|++|++.+||.|.+ .+.+|+. 
T Consensus         7 ~~~~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~-~~~~~~~-   82 (149)
T 2qqy_A            7 DVKELIEGLNEDLAGEYSAIIMYNHNAATVS--GIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTT-IPLRVKQ-   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC-CCCCCCC-
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC-CCCCCCC-
Confidence            3578999999999999999999999999999  77999999999999999999999999999999999988 5554432 


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                           +.++.++++.+++.|+.++..|++++++|.+.+|+.+++||+ +++.++.+++.++..++..
T Consensus        83 -----~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~~~eee~h~~~l~~~l~~  143 (149)
T 2qqy_A           83 -----AEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLE-DMIADETNHMEELDRLLND  143 (149)
T ss_dssp             -----CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHC-
T ss_pred             -----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence                 357899999999999999999999999999999999999999 9999999999999988764

>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1

Probab=99.91  E-value=2.9e-23  Score=168.83  Aligned_cols=131  Identities=15%  Similarity=0.099  Sum_probs=122.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhh-cccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------cC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAY-FDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IM  165 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~-Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I~  165 (261)
                      +++.||+|++.|+ +.|+|+.|+.| ++  +.+++++++||.++++||++||+++++|++.+||.|....        |+
T Consensus         2 ~~~~Ln~~la~e~-~~~~~~~~~hw~v~--g~~f~~l~~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~i~   78 (142)
T 1ji5_A            2 VIEVLNKQVADWS-VLFTKLHNFHWYVK--GPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQ   78 (142)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHH-HHHHHHHhhhhccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhhCCCC
Confidence            6789999999999 89999999999 45  6799999999999999999999999999999999999876        88


Q ss_pred             CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          166 QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       166 ~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .|+.++      ++.++++.++++|+.++..+++++++|.+.+|+.|.+||+ |||.++.+++.+|..++
T Consensus        79 ~~~~~~------~~~e~l~~~l~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~l~e~ek~~w~l~~~l  141 (142)
T 1ji5_A           79 EAAYGE------TAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLL-GIYTELEKHAWMLRAFL  141 (142)
T ss_dssp             CCCTTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            877643      5789999999999999999999999999999999999999 99999999999998775

>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}

Probab=99.90  E-value=8.7e-23  Score=170.04  Aligned_cols=136  Identities=10%  Similarity=0.092  Sum_probs=127.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-------  163 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-------  163 (261)
                      -++++.+.||+|++.|+.+++.|+.|+.|++  +.++.+++.||.++++||++||+++++|++.+||.|..+.       
T Consensus         7 ~~~~v~~~LN~~La~e~~~~~~y~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~iaErI~~lGg~p~~~~~~~~~~s   84 (158)
T 2c41_A            7 LKEQVLTTLKREQANAVVMYLNYKKYHWLTY--GPLFRDLHLLFEEQGSEVFAMIDELAERSLMLDGQPVADPADYLKVA   84 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSGGGHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhheE--CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHC
Confidence            4678999999999999999999999999999  7899999999999999999999999999999999999884       


Q ss_pred             -cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 -IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 -I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                       |+.|+. +     .++.++++.++++|+.++..+++++++|.+.+|+.|.+||+ ||+.+..+++-+|..++
T Consensus        85 ~i~~~~~-~-----~~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~-~~l~~~Ek~~w~l~~~l  150 (158)
T 2c41_A           85 TVTPSSG-Q-----LTVKQMIEEAIANHELIITEMHQDAEIATEAGDIGTADLYT-RLVQTHQKHRWFLKEFL  150 (158)
T ss_dssp             CSCCCCS-C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCC-C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence             677665 3     36899999999999999999999999999999999999999 99999999999998766

>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1

Probab=99.89  E-value=5.9e-22  Score=162.92  Aligned_cols=138  Identities=14%  Similarity=0.085  Sum_probs=126.5

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec------
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH------  162 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~------  162 (261)
                      .+.++++.+.||+|++.|+.+.+.|..++.++.  +.++.|++.||.++++||++||+++++|++.+||.|...      
T Consensus         3 ~~~~~~v~~~LN~~la~e~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~   80 (149)
T 1n1q_A            3 TSIQQLVAVLLNRQVANWVVLYVKLHNFHWNVN--GPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLE   80 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhccchhee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHh
Confidence            356789999999999999888888888888878  789999999999999999999999999999999999987      


Q ss_pred             --ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          163 --SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       163 --~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                        .|+.|+.++      ++.++++.++++|+.++..+++++++|.+.+|+.|.+||+ ||+.+..+++..|..++
T Consensus        81 ~s~i~~~~~~~------~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~-~~l~e~ek~~w~l~~~l  148 (149)
T 1n1q_A           81 EASIKEATGGE------SAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLD-AIEAGLEKHVWMLEAFL  148 (149)
T ss_dssp             HCCSCCCCSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence              477777653      5789999999999999999999999999999999999999 99999999999998765

>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}

Probab=99.89  E-value=8.7e-22  Score=169.32  Aligned_cols=145  Identities=14%  Similarity=0.111  Sum_probs=132.8

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-------  162 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-------  162 (261)
                      +-++++++.||++++.|+.++++|+.|+.+++  +.++++++.||.++++||++||++|++|++.+||.|...       
T Consensus        24 ~~~~~vi~~LN~~La~e~~a~~~y~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~~~~~~~~~  101 (192)
T 2vxx_A           24 ATTTPICEGMNRLLASFQALYLQYQKHHFVVE--GAEFYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLAAL  101 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            35678999999999999999999999999999  779999999999999999999999999999999999987       


Q ss_pred             -ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          163 -SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       163 -~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                       .|+.|+.++     .++.++++.+++.|+.++..|++++++|.+.+|+.|.+||+ |||.++.+++.+|..++.....+
T Consensus       102 s~i~e~~~~~-----~~~~e~l~~~l~~e~~~i~~~~~~i~~a~~~~D~~T~~lL~-~~l~eeEkh~w~L~~~L~~~~l~  175 (192)
T 2vxx_A          102 CCFTPEPEGA-----FNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRATAYLYD-QILLKTEERAYHIGHFLANDSLK  175 (192)
T ss_dssp             CSSCCCCSSB-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHSSCCSC
T ss_pred             CcCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhccCCcc
Confidence             777766543     46899999999999999999999999999999999999999 99999999999999988754444


Q ss_pred             c
Q 024844          242 G  242 (261)
Q Consensus       242 g  242 (261)
                      .
T Consensus       176 ~  176 (192)
T 2vxx_A          176 V  176 (192)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1

Probab=99.89  E-value=1.4e-21  Score=159.92  Aligned_cols=135  Identities=14%  Similarity=0.062  Sum_probs=124.6

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      .+++.+.||+|++.|+.+.+.|..++.++.  +.++.|++.||.++++||++||+++++|++.+||.|...        .
T Consensus         3 ~~~v~~~LN~~la~~~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~~~~~s~   80 (146)
T 1jig_A            3 KTNVVEVLNKQVANWNVLYVKLHNYHWYVT--GPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSS   80 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCc
Confidence            367899999999999998888888888888  789999999999999999999999999999999999987        4


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+.|+.++      ++.++++.++++|+.++..+++++++|.+.+|+.|.+||+ ||+.+..+++..|..++
T Consensus        81 i~~~~~~~------~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~-~~l~e~ek~~w~l~~~l  145 (146)
T 1jig_A           81 VNEGTSKE------SAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLL-AIHTTLEQHVWMLSAFL  145 (146)
T ss_dssp             SCCCCSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            77777653      5789999999999999999999999999999999999999 99999999999988764

>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}

Probab=99.88  E-value=1e-21  Score=169.07  Aligned_cols=138  Identities=15%  Similarity=0.204  Sum_probs=127.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------  162 (261)
                      -+++++++||+|++.|+.+.+.|+.++.++.  ++++.+++.||.++++||++||++|++||+.+||.|...        
T Consensus        22 ~~~~v~~~LN~~La~e~~~~~~y~~~hw~v~--G~~f~~lh~~f~~~~~ee~~haD~iaERI~~LGg~p~~~~~~~~~~s   99 (188)
T 2clb_A           22 DIKKLVDKLVKATAAEFTTYYYYTILRMHLT--GMEGEGLKEIAEDARLEDRLHFELMTQRIYELGGGLPRDIRQLADIS   99 (188)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--HHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhc
Confidence            3678999999999999999999999999888  789999999999999999999999999999999999954        


Q ss_pred             ccC-C-CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          163 SIM-Q-PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       163 ~I~-~-P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      .|+ . |+.+|     .++.++|+.++++|+.++..+++++++|.+. |+.|.+||+ |||.+|++++.++..+|..
T Consensus       100 ~I~~e~~~~~~-----~~~~e~l~~~l~~e~~v~~~~~~~i~~A~e~-D~~T~dlL~-~~l~e~ee~~~~l~~~L~~  169 (188)
T 2clb_A          100 ACSDAYLPENW-----KDPKEILKVLLEAEQCAIRTWKEVCDMTYGK-DPRTYDLAQ-RILQEEIEHEAWFLELLYG  169 (188)
T ss_dssp             SSCCCCCCTTT-----TSHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHH-HHHHHHHHHHHHHHHHHSC
T ss_pred             cCCccCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            677 6 65544     4688999999999999999999999999999 999999999 9999999999999988763

>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}

Probab=99.88  E-value=3e-21  Score=160.72  Aligned_cols=135  Identities=13%  Similarity=0.058  Sum_probs=125.4

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      ++++++.||+|++.|+.+.+.|..+..++.  +.++.|++.||.++++||++||+++++|++.+||.|...        .
T Consensus         5 ~~~v~~~LN~~La~e~~~~~~~~~~hw~v~--g~~f~~lh~~~~~~~~ee~~had~iaERI~~lGg~p~~~~~~~~~~s~   82 (156)
T 2d5k_A            5 QQDVVKELNQQVANWTVAYTKLHNFHWYVK--GPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSI   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhheeeeE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCC
Confidence            578899999999999999999998888888  789999999999999999999999999999999999987        4


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+.|+.++      ++.++|+..+++|+.++..+++++++|.+.+|+.|.+||+ ||+.+..+++-.|+.++
T Consensus        83 i~~~~~~~------~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~-~~l~e~Ek~~w~L~a~l  147 (156)
T 2d5k_A           83 VKEAAKGY------SAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFI-GMQTSVDKHNWMFKSYL  147 (156)
T ss_dssp             SCCCCSCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            77777653      5789999999999999999999999999999999999999 99999999999998766

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=99.83  E-value=1.5e-19  Score=157.87  Aligned_cols=136  Identities=8%  Similarity=-0.009  Sum_probs=126.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCcc
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHA  174 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~  174 (261)
                      .++.||++++-|.++++.|+.||.+++.  .|++++|++|+..|.+|+.||+++++++..+||.|.+ .+. |...    
T Consensus        29 T~~nL~~a~~gE~~a~~~Y~~~A~~A~~--eG~~~iA~~F~~~A~~E~~HA~~~~~~l~~l~~~~~i-~~~-p~~~----  100 (202)
T 1yuz_A           29 TLENLKAAIAGETGAHAKYTAFAKAARE--QGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEK-PTV-AAPS----  100 (202)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC-CCC---CC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcee-ccC-CccC----
Confidence            8899999999999999999999999995  4999999999999999999999999999999999999 777 5433    


Q ss_pred             ccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          175 EKGDALYAMELALSLE-KLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       175 e~~d~lea~e~AL~lE-k~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                       +++..+.|+.++++| ..+++.|.+++++|.+++|..+.+||+ |++.+|.+|++.+.+++++|+.
T Consensus       101 -~gst~enL~~a~~gE~~E~t~my~~~a~~A~eEgd~~~a~~f~-~i~~~E~~H~~~~~~ll~~l~~  165 (202)
T 1yuz_A          101 -AYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFT-RAKLAESVHAERYLAAYNDIDA  165 (202)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTC
T ss_pred             -CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence             257899999999999 999999999999999999999999999 9999999999999999998875

>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A

Probab=99.78  E-value=1.3e-17  Score=142.41  Aligned_cols=137  Identities=18%  Similarity=0.205  Sum_probs=119.2

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhc-ccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYF-DRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------  161 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~F-drd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------  161 (261)
                      -.+++++.||+++..++.+...|. +++|+ .  +.++.+++.+|.++++|+++||.++++||+.+||.|..        
T Consensus        26 ~~~~vi~~LN~~La~~~~~~~~~~-~~hw~v~--G~~f~~lh~~~ee~~~e~~~haD~laERI~~LGg~P~~~~~~~~~~  102 (182)
T 1tjo_A           26 RAEQCVDALNADLANVYVLYHQLK-KHHWNVE--GAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAE  102 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHh
Confidence            346789999999966665555555 55555 6  78999999999999999999999999999999999998        


Q ss_pred             cccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          162 HSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       162 ~~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      ..|+.|+.++     .++.++++..++.|+.++..+++++++|.+.+|+.|.++|+ +++.+..+++.+|..++.
T Consensus       103 s~i~e~~~~~-----~~~~e~l~~~l~~e~~~i~~~r~~i~~a~e~~D~~T~dll~-~~l~~~Ek~~w~L~a~l~  171 (182)
T 1tjo_A          103 ASVDVEDEDV-----YDIRTSLANDMAIYGDIIEATREHTELAENLGDHATAHMLR-EGLIELEDDAHHIEHYLE  171 (182)
T ss_dssp             CCSCCCCSSB-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHTS
T ss_pred             CCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            6677666532     36899999999999999999999999999999999999999 999999999999987764

>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1

Probab=99.60  E-value=7.6e-14  Score=116.33  Aligned_cols=137  Identities=9%  Similarity=0.032  Sum_probs=122.9

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------  162 (261)
                      -.+++++.||+.+..|+.+.++|+.++-++.  ++++..+..+|.++++++++|+..++++|...||.|...        
T Consensus        10 ~~~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~~~~~~~~~s   87 (156)
T 2fjc_A           10 AIAAICEQLRQHVADLGVLYIKLHNYHWHIY--GIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALS   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhhC
Confidence            3578999999999999999999999999888  789999999999999999999999999999999999874        


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .|+.++.+     +.++.++++..++.|+.+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++
T Consensus        88 ~i~e~~~~-----~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l  154 (156)
T 2fjc_A           88 GIAEETEK-----EITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIIT-DILRTLGKAIWMLGATL  154 (156)
T ss_dssp             CSCCCCCC-----SEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            23332322     136889999999999999999999999999999999999999 99999999999988765

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=99.59  E-value=4.2e-14  Score=120.39  Aligned_cols=125  Identities=13%  Similarity=0.113  Sum_probs=114.6

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEF  171 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f  171 (261)
                      ..+.++.||+++.-|.+|.+.|+.||.++++  .|++.+|++|+..|.+|++||.++++++   ||      |       
T Consensus         4 ~~~T~~nL~~afagEs~A~~~Y~~~A~~A~~--eG~~~iA~~F~~~A~~E~~HA~~~~~~L---~~------i-------   65 (170)
T 3pwf_A            4 RTMTKKFLEEAFAGESMAHMRYLIFAEKAEQ--EGFPNIAKLFRAIAYAEFVHAKNHFIAL---GK------L-------   65 (170)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHT---TC------C-------
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHH---cC------C-------
Confidence            3567899999999999999999999999995  5999999999999999999999999985   44      1       


Q ss_pred             CccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          172 DHAEKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~-vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                           ++..+.|+.++..|.. .++.|.+++++|.+++|..+.++++ ++++.+..|.+.+..++.+|+.
T Consensus        66 -----~~t~enL~~a~~gE~~e~~~mY~~~a~~A~eeg~~~~a~~f~-~i~~~E~~H~~~~~~~l~~l~~  129 (170)
T 3pwf_A           66 -----GKTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTH-YALEAEKIHAELYRKAKEKAEK  129 (170)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -----CChHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence                 3457999999999997 5899999999999999999999999 9999999999999999999964

>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}

Probab=99.59  E-value=1.3e-13  Score=114.53  Aligned_cols=134  Identities=17%  Similarity=0.166  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------cc
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------SI  164 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~I  164 (261)
                      +++.+.||+.+..|+.+...|..++-++.  ++++..+..+|.++++++++|+..+++++...||.|...        .|
T Consensus        11 ~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~~~~~~~~s~i   88 (153)
T 2chp_A           11 TLVENSLNTQLSNWFLLYSKLHRFHWYVK--GPHFFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASI   88 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCC
Confidence            46899999999999999999998877777  789999999999999999999999999999999999874        23


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      +.++.+      .++.++++..++.|+.+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++
T Consensus        89 ~e~~~~------~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l  152 (153)
T 2chp_A           89 TDGGNE------TSASEMVQALVNDYKQISSESKFVIGLAEENQDNATADLFV-GLIEEVEKQVWMLSSYL  152 (153)
T ss_dssp             CSCCCC------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             CCCCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            433332      26889999999999999999999999999999999999999 99999999998887654

>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*

Probab=99.59  E-value=1.3e-13  Score=115.41  Aligned_cols=138  Identities=9%  Similarity=0.066  Sum_probs=123.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------  162 (261)
                      -.+++.+.||+.+..|+.+..+|+.++-+..  ++++..+..+|.++++++++|+..+++++...||.|..+        
T Consensus        14 ~~~~vi~~Ln~~La~~~~l~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~~~~~~~~~s   91 (162)
T 1o9r_A           14 AKSTVIGILNESLASVIDLALVTKQAHWNLK--GPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTT   91 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHC
Confidence            3467899999999999999999999888888  789999999999999999999999999999999999876        


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .|+..+.+     +.++.++++..++.|+.+...+++++++|.+.+|+.|.++++ .++.+..+++-+|..++.
T Consensus        92 ~i~e~~~~-----~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l~  159 (162)
T 1o9r_A           92 KLKAYPTD-----IYKIHDHLDALIERYGEVANMIRKAIDDSDEAGDPTTADIFT-AASRDLDKSLWFLEAHVQ  159 (162)
T ss_dssp             CSCCCCSS-----CCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            34433322     136889999999999999999999999999999999999999 899999999998887653

>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A

Probab=99.58  E-value=1.5e-13  Score=115.27  Aligned_cols=137  Identities=6%  Similarity=-0.098  Sum_probs=122.3

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-------  163 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-------  163 (261)
                      -.+++.+.||+.+..|+.+.++|..++-++.  ++++..+..+|.++++++++|+..+++++...||.|....       
T Consensus        17 ~~~~vi~~Ln~~La~~~~l~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~t~~~~~~~s   94 (161)
T 2yjk_A           17 VAAAAAQFLTPVVHKMQALVVNGKQAHWNVR--GSNFIAIHELLDSVVAHAQDYADTAAERIVALGLPIDSRVSTMAEKT   94 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhheeeE--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhc
Confidence            4467899999999999999999998888777  7899999999999999999999999999999999998744       


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      |+.++.+     +.++.++++..++.|+.+...+++++ +|.+.+|+.|.++++ .++.+..+++-+|..++.
T Consensus        95 i~e~~~~-----~~~~~eml~~~l~~~~~~i~~~r~~i-~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l~  160 (161)
T 2yjk_A           95 STAVPAG-----FAQWQDEIKAIVSDIDAALVDLQAAI-DGLDEVDLTSQDVAI-EIKRGVDKDRWFLLAHLA  160 (161)
T ss_dssp             CCCSCSS-----CEEHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            4443322     12688999999999999999999999 999999999999999 999999999999988764

>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A

Probab=99.58  E-value=9.5e-14  Score=115.63  Aligned_cols=137  Identities=13%  Similarity=0.080  Sum_probs=122.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------c
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------I  164 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I  164 (261)
                      +++.+.||+.+..|+.+.++|+.++-++.  ++++..+..+|.++++++++|+..+++++...||.|....        |
T Consensus         7 ~~vi~~Ln~~La~~~~~~~q~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~~D~lAERI~~Lgg~P~~~~~~~~~~s~l   84 (156)
T 2bk6_A            7 VDTKEFLNHQVANLNVFTVKIHQIGWYMR--GHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASV   84 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchheE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCC
Confidence            46889999999999999999999998888  7899999999999999999999999999999999998742        4


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      +..+.+..    .++.++++..++.|+.+...+++++++|.+.+|+.|.+++. .++.+..+++-+|..++.
T Consensus        85 ~e~~~~~~----~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l~  151 (156)
T 2bk6_A           85 EEAPYTKP----KTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLI-AFKASIDKHIWMFKAFLG  151 (156)
T ss_dssp             CCCCCCSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            44333210    16889999999999999999999999999999999999999 999999999999887764

>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A

Probab=99.56  E-value=3e-13  Score=118.39  Aligned_cols=137  Identities=11%  Similarity=0.052  Sum_probs=122.0

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      .+++++.||+.+..|+.+.++|..++-++.  ++++..+..+|.++++++++|+..++++|...||.|...        .
T Consensus        58 ~~~vi~~LN~~LAde~~l~~qy~~~HWnv~--G~~F~~LHe~~ee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s~  135 (207)
T 2c2u_A           58 FQTVAETLQRNLATTISLYLKFKKYHWDIR--GRFFRDLHLAYDEFIAEIFPSIDEQAERLVALGGSPLAAPADLARYST  135 (207)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTBCCCCSHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhCC
Confidence            457899999999999999999998887777  789999999999999999999999999999999999874        2


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      |+.++.+     +.++.++++..++.|..+...+++++.+|.+.+|+.|.++|+ .+|.+..+++-+|..++.
T Consensus       136 I~e~~~g-----~~~~~emL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dLl~-~il~~~EkhiW~L~a~L~  202 (207)
T 2c2u_A          136 VQVPQET-----VRDARTQVADLVQDLSRVGKGYRDDSQACDEANDPVTADMYN-GYAATIDKIRWMLQAIMD  202 (207)
T ss_dssp             SCCCSSC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             CCCcCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            4433221     136889999999999999999999999999999999999999 999999999999987763

>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A

Probab=99.53  E-value=6.3e-13  Score=113.91  Aligned_cols=138  Identities=10%  Similarity=-0.012  Sum_probs=123.5

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-------  162 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-------  162 (261)
                      +-.+++.+.||+.+..|+.+...|..++-++.  ++++..+..+|.++++++++|+..++++|...||.|...       
T Consensus        12 ~~~~~vi~~LN~~LA~~~~l~~q~~~~hW~v~--G~~F~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t~~~~~~~   89 (183)
T 2yw6_A           12 KKASDVADLLQKQLSTYNDLHLTLKHVHWNVV--GPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKD   89 (183)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            35578999999999999999999998888888  789999999999999999999999999999999999873       


Q ss_pred             -ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 -SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 -~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                       .|+.++.+     +.++.++++..++.|+.+...+++++++|.+. |+.|.++|+ .++.+..+++-+|..++.
T Consensus        90 s~i~e~~~~-----~~~~~eml~~~l~~~~~~i~~~r~~i~~ae~~-D~~T~dll~-~il~~~Ek~~w~L~a~L~  157 (183)
T 2yw6_A           90 RTWDDYSVE-----RDTVQAHLAALDLVYNGVIEDTRKSIEKLEDL-DLVSQDLLI-AHAGELEKFQWFVRAHLE  157 (183)
T ss_dssp             CCSCCCCCC-----SEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHH-HHHHHHHHHHHHHHHHHC
T ss_pred             CCCCccCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence             34433322     13688999999999999999999999999999 999999999 999999999999998875

>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}

Probab=99.53  E-value=4.1e-13  Score=112.58  Aligned_cols=137  Identities=12%  Similarity=0.061  Sum_probs=121.1

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-------  162 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-------  162 (261)
                      +-.+++.+.||+.+..|+.++..|....-+..  +.++..+..+|.++++++++|+..++++|...||.|...       
T Consensus        14 ~~~~~vi~~Ln~~La~~~~l~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERIl~LGg~P~~t~~~~~~~   91 (161)
T 2z90_A           14 HATPEFGGNLQKVLVDLIELSLQGKQAHWNVV--GSNFRDLHLQLDELVDFAREGSDTIAERMRALDAVPDGRSDTVAAT   91 (161)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhH
Confidence            45788999999999999999999987777777  779999999999999999999999999999999999874       


Q ss_pred             -ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          163 -SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       163 -~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                       .|+.++.++     .++.++++..++.|+.+...+++++++|.+. |+.|.++++ .++.+..+++-+|..++
T Consensus        92 s~i~e~~~~~-----~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~-D~~T~dll~-~il~~~Ek~~w~L~a~l  158 (161)
T 2z90_A           92 TTLPEFPAFE-----RSTADVVDLITTRINATVDTIRRVHDAVDAE-DPSTADLLH-GLIDGLEKQAWLIRSEN  158 (161)
T ss_dssp             CCSCCCCSSC-----EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHH-HHHHHHHHHHHHHHTTT
T ss_pred             CCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence             344433221     3688999999999999999999999999999 999999999 99999999998887654

>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*

Probab=99.53  E-value=5.6e-13  Score=112.30  Aligned_cols=139  Identities=10%  Similarity=0.029  Sum_probs=119.4

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------  162 (261)
                      -.+++++.||+.+..|+.++..|....-+..  +.++..+..+|.++++++++|+..++++|...||.|...        
T Consensus        14 ~~~~vi~~LN~~La~~~~l~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~haD~lAERIl~LGg~P~~t~~~~~~~s   91 (165)
T 2cf7_A           14 SLADSKAVLNQAVADLSVAHSILHQVHWYMR--GRGFMIWHPKMDEYMEEIDGYLAEMSERLITLGGAPFSTLKEFSENS   91 (165)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhhheE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHC
Confidence            4467889999999999999999977777777  779999999999999999999999999999999999874        


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .|+..+.++    ..++.++++..++.|+.+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++.
T Consensus        92 ~i~e~~~~~----~~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~L~  160 (165)
T 2cf7_A           92 QLKEVLGDY----NVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFN-VAKASIEKHIWMLQAELG  160 (165)
T ss_dssp             SCCCCCCCT----TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            233222211    026789999999999999999999999999999999999999 899999999999987764

>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A

Probab=99.53  E-value=7.9e-13  Score=112.45  Aligned_cols=140  Identities=10%  Similarity=0.060  Sum_probs=122.8

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-------  162 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-------  162 (261)
                      .-.+++.+.||+.+..|+.++..|....-+..  +.++..+..+|.++++++++|+..+++++...||.|...       
T Consensus        23 ~~~~~vi~~LN~~LA~~~~l~~k~~~~HWnv~--G~~f~~lh~~~ee~~~e~~~~aD~lAERIl~LGg~P~~t~~~~~~~  100 (175)
T 2wlu_A           23 SKNEKTKAVLNQAVADLSVAASIVHQVHWYMR--GPGFLYLHPKMDELLDSLNANLDEVSERLITIGGAPYSTLAEFSKH  100 (175)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHh
Confidence            56788999999999999999999977777676  779999999999999999999999999999999999874       


Q ss_pred             -ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 -SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 -~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                       .|+..+.++.    .++.++++..++.|+.+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++.
T Consensus       101 s~i~e~~~~~~----~~~~eml~~~l~~~~~~i~~~r~~i~~ae~~~D~~T~dll~-~il~~~Ek~~w~L~a~L~  170 (175)
T 2wlu_A          101 SKLDEAKGTYD----KTVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFT-AAKTEAEKTIWMLQAERG  170 (175)
T ss_dssp             CSCCCCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhh
Confidence             3343332210    16889999999999999999999999999999999999999 999999999999987764

>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}

Probab=99.52  E-value=4e-13  Score=116.92  Aligned_cols=145  Identities=10%  Similarity=0.055  Sum_probs=126.2

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-------  162 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-------  162 (261)
                      .-.+++.+.||+.+..|+.++..|....-+..  +.++..+..+|.++++++++||..+++++...||.|...       
T Consensus        39 ~~~~~vi~~LN~~LAde~~l~~k~~~~HWnV~--G~~F~~LH~~~ee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~  116 (199)
T 2xgw_A           39 SKNEKTKAVLNQAVADLSVAASIVHQVHWYMR--GPGFLYLHPKMDELLDSLNANLDEVSERLITIGGAPYSTLAEFSKH  116 (199)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Confidence            46778999999999999999999977776666  779999999999999999999999999999999999874       


Q ss_pred             -ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          163 -SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       163 -~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                       .|+.++.++.    .++.++++..++.|..+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++..+.++
T Consensus       117 s~i~e~~~g~~----~~~~emL~~ll~~e~~~i~~~re~i~~aee~~D~~T~dll~-~il~~~Ekh~w~L~a~L~~~~~~  191 (199)
T 2xgw_A          117 SKLDEAKGTYD----KTVAQHLARLVEVYLYLSSLYQVGLDITDEEGDAGTNDLFT-AAKTEAEKTIWMLQAERGQGPAL  191 (199)
T ss_dssp             CSCCCCCCCTT----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHTTCCCCC
T ss_pred             CCCCcCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHH
Confidence             3443332210    16789999999999999999999999999999999999999 99999999999999888765543

>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A

Probab=99.51  E-value=8e-13  Score=116.04  Aligned_cols=138  Identities=9%  Similarity=0.045  Sum_probs=122.3

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------  162 (261)
                      -.+++++.||+.+..|+.+...|..++-++.  ++++..+..+|.++++++++|+..++++|...||.|...        
T Consensus        44 ~~~~vi~~LN~~LAde~~l~~q~~~~HWnv~--G~~F~~LHe~fee~~~e~~~haD~lAERIl~LGG~P~~t~~~~~~~s  121 (211)
T 2c2j_A           44 DLKKSVQALQNTLTELQALQLQTKQAHWNVS--GTLWYTLHELLQDHYEGISKFADDVAERQLSVGASSDGRAITIVAAS  121 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHhC
Confidence            3467999999999999999999998888888  789999999999999999999999999999999999873        


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      .|+..+.+     +.++.++++..++.|+.+...+++++++|.+. |+.|.++|+ .+|.+..+++-+|..++..
T Consensus       122 ~i~e~~~g-----~~~~~emL~~ll~~e~~~i~~~re~i~~aee~-D~~T~dLl~-~il~~~EkhiW~L~a~L~~  189 (211)
T 2c2j_A          122 RLPEIPGG-----FLDDAQVIQFFTYQYETVGQRIHQRVGDVEKV-DPTTANLLQ-EVEHIIEKYQWQMRAFLQN  189 (211)
T ss_dssp             CSCCCCCS-----CEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHH-HHHHHHHHHHHHHHGGGCC
T ss_pred             CCcccCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            33332221     13688999999999999999999999999999 999999999 9999999999999877653

>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*

Probab=99.48  E-value=2.1e-12  Score=108.87  Aligned_cols=133  Identities=9%  Similarity=0.041  Sum_probs=116.9

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      .+++.+.||+.+..|+.+...|..+.-+..  ++++..+..+|.++++++++|+..+++++...||.|...        .
T Consensus        26 ~~~vi~~Ln~~LA~~~~l~~k~~~~hw~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~t~~~~~~~s~  103 (167)
T 3ak8_A           26 KKATVELLNRQVIQFIDLSLITKQAHWNMR--GANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKTP  103 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhheeE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCC
Confidence            467899999999999999999987777776  889999999999999999999999999999999999874        4


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+.++.++     .++.++++..++.|+.+...+++++++|.   |+.|.++++ .++.+..+++-+|+.++
T Consensus       104 i~e~~~~~-----~~~~eml~~~l~~~~~~i~~~r~~i~~a~---D~~T~dll~-~il~~~Ek~~w~L~a~L  166 (167)
T 3ak8_A          104 LKSYPLDI-----HNVQDHLKELADRYAVVANDVRKAIGEAK---DEDTADIFT-AASRDLDKFLWFIESNI  166 (167)
T ss_dssp             SCCCCSSC-----CBHHHHHHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHH-HHHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            44433321     36889999999999999999999999996   999999999 99999999998887543

>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0

Probab=99.48  E-value=3.4e-12  Score=105.86  Aligned_cols=135  Identities=13%  Similarity=0.093  Sum_probs=120.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cccC
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HSIM  165 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~I~  165 (261)
                      ++.+.||..+..++.....|....-+..  +.++..+..+|.++++++++|+..+++++...||.|..        ..|+
T Consensus         5 ~~~~~Ln~~LAd~~~l~~k~~~~HWnv~--G~~F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~t~~~~~~~s~i~   82 (152)
T 3kwo_A            5 SVTKQLLQMQADAHHLWVKFHNYHWNVK--GLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSP   82 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHBC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeeE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCC
Confidence            5789999999999999999998887777  77999999999999999999999999999999999886        3444


Q ss_pred             CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          166 QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       166 ~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .++.+.     .++.++++..++.|..+...+++.+++|.+.+|+.|.++|+ .++.+..+++-+|..++.
T Consensus        83 e~~~~~-----~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~~l~~~Ek~~w~L~a~l~  147 (152)
T 3kwo_A           83 KVAKDC-----FTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQ-ENIAKYEKSLWMIGATLQ  147 (152)
T ss_dssp             CCCCSC-----BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            443321     26899999999999999999999999999999999999999 999999999999887764

>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}

Probab=99.47  E-value=5.7e-12  Score=105.24  Aligned_cols=135  Identities=10%  Similarity=0.055  Sum_probs=118.2

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      .+++.+.||+.+..++.+...|..+.-+..  +.++..+..+|.++++++++|+..+++++...||.|...        .
T Consensus        16 ~~~v~~~Ln~~LAd~~~l~~k~~~~HWnv~--G~~F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~   93 (159)
T 3iq1_A           16 SQKLANALNNLLANYQVFYMNTRGYHWNIQ--GKEFFELHAKFEEIYTDLQLKIDELAERILTLSARPMHSFSGYLKAAQ   93 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhheeeE--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHCC
Confidence            457899999999999999999987754455  779999999999999999999999999999999998853        2


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+.+. .     ..++.++++..++.|..+...+++.+++|.+.+|+.|.++|+ .++.+..+++-.|..++
T Consensus        94 i~e~~-~-----~~~~~eml~~ll~~~~~~i~~~r~~i~~ae~~~D~~T~dll~-~~l~~~Ek~~WmL~a~l  158 (159)
T 3iq1_A           94 IKEHT-D-----SIDGRSSMQGLVDGFSILLHQQRDILELAGETGDEGTSALMS-DYIREQEKLVWMLNAWL  158 (159)
T ss_dssp             SCCCC-C-----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCccC-C-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            44332 1     136899999999999999999999999999999999999999 99999999988887665

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}

Probab=99.47  E-value=1.5e-12  Score=107.93  Aligned_cols=131  Identities=17%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      .+.++.||+++.-|.++...|+.+|..+++  .|++.+|++|+..|.+|++||.++++++...|+ |.        ..+.
T Consensus        11 ~~t~~nL~~afagEs~A~~~Y~~~A~~A~~--eG~~~iA~~F~~~A~~E~~HA~~~~~~L~~~~~-p~--------~~~~   79 (144)
T 4di0_A           11 SKTEENLKYAFAGESQANRRYLYFASKADV--EGQNDIAALFRSTAEGETGHAHGHLEYLEAVGD-PA--------TGLP   79 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC-TT--------TSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cc--------cCCC
Confidence            467899999999999999999999999995  599999999999999999999999999876553 21        1110


Q ss_pred             ccccCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          173 HAEKGDALYAMELALSLEKLT-NEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lEk~v-t~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                         .++..+.|+.++..|... +..|....++|.+++|....++++ +....+-.|.+.+...+.+|
T Consensus        80 ---~~~T~enL~~A~~GE~~e~~~~Y~~~a~~A~~eG~~~ia~~f~-~~a~~E~~Ha~~~~~~l~~l  142 (144)
T 4di0_A           80 ---FGTSRQNLQSAIAGETHEYTDMYPGMAKTARDEGFEEIANWFE-TLAKAERSHANRYTKALDGL  142 (144)
T ss_dssp             ---CSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHTC
T ss_pred             ---CCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHCCcHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence               145689999999999999 579999999999999999999999 99999999999999888765

>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A

Probab=99.46  E-value=4.9e-12  Score=106.58  Aligned_cols=136  Identities=10%  Similarity=0.023  Sum_probs=117.8

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cc
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HS  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~  163 (261)
                      .+++.+.||+.+..++.+...|....-+..  +.++..+..+|.++++++++|+..++++|...||.|..        ..
T Consensus        20 ~~~v~~~Ln~~LAd~~~l~~k~~~~HWnv~--G~~F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~   97 (164)
T 4eve_A           20 HMKTFEILKHLQADAIVLFMKVHNFHWNVK--GTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTR   97 (164)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHcC
Confidence            456889999999999999999987744445  77999999999999999999999999999999999875        23


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      |+.++...     -++.++++..++.|..+...+++.+++|.+.+|+.|.++|+ .++.+..+++-+|+.++
T Consensus        98 i~e~~~~~-----~~~~eml~~ll~~~~~~i~~~r~~i~~aee~~D~~T~dll~-~il~~~Ek~~WmL~a~l  163 (164)
T 4eve_A           98 VKEETKTS-----FHSKDIFKEILEDYKHLEKEFKELSNTAEKEGDKVTVTYAD-DQLAKLQKSIWMLQAHL  163 (164)
T ss_dssp             SCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence            44433321     26899999999999999999999999999999999999999 99999999988887665

>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}

Probab=99.42  E-value=2.3e-13  Score=112.75  Aligned_cols=136  Identities=10%  Similarity=0.052  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------c
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------I  164 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I  164 (261)
                      +++.+.||+.+..|+.++..|....-+..  +.++..+..+|.++++++++|+..+++++...||.|....        |
T Consensus         4 ~~vi~~Ln~~La~~~~~~~~~~~~hW~v~--G~~f~~lh~~~ee~~~e~~~~aD~lAERI~~Lgg~P~~~~~~~~~~s~l   81 (151)
T 2pyb_A            4 DAIQLKLQELLASLHIFYSNLRGIHWNIK--DTNFFVIHKKTQKLYEYIEKIIDIVAERSRMLGYDSEFRYSEFMKKSFI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CSSTHHHHHHHHHHHTTTHHHHHHHHHHHHHHTCCCCCCSTTTTTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccccC--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCC
Confidence            56899999999999999999987777777  7799999999999999999999999999999999998743        3


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      +.++.+..    .++.++++..++.|+.+...+++++++|.+.+|+.|.++|+ .++.+..+++-+|..++
T Consensus        82 ~e~~~~~~----~~~~eml~~~l~~~~~~i~~~r~~i~~a~~~~D~~T~dll~-~il~~~Ek~~w~L~a~l  147 (151)
T 2pyb_A           82 KELDIEST----SNFLPSMESIVCSLTEILKNIFGMRKLIDTAGDYGTANIMD-DIMSDLEKHLWMHKALL  147 (151)
T ss_dssp             CCCCSCSS----SCCCSSCCTTSTTHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHTTTS
T ss_pred             CCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            33332210    04568999999999999999999999999999999999999 99999999988887654

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=99.15  E-value=1.5e-09  Score=90.58  Aligned_cols=141  Identities=14%  Similarity=0.108  Sum_probs=113.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCeeeecccCCC---C
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR--GGKVKLHSIMQP---P  168 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~R--GG~v~l~~I~~P---~  168 (261)
                      .+.+.|+..|..|..+..+|..+|..++  .++.+.+++.|...|.+|+.|+..|.++...+  .|.+... +..|   .
T Consensus         5 ~~~e~L~~Ai~~E~~~~~~Y~~lA~~~~--~~~~~~~k~~f~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~-~~~~~~~~   81 (167)
T 2oh3_A            5 TLAEFLAHAIALETEAAERYVELADMME--AHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQ-YRWKTPPE   81 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGG-TSCCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc-ccCCCcHh
Confidence            3789999999999999999999999888  56899999999999999999999999998774  3322222 1111   1


Q ss_pred             C--CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          169 S--EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       169 ~--~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                      .  .+.-....++.++++.|+..|+....-|..+   |....|+.+..+++ .+..+..+|++.|..+++.+..-
T Consensus        82 ~~~~~~~~~~~~~~~~l~~A~~~E~~a~~fY~~~---a~~~~d~~~k~~~~-~la~eE~~H~~~l~~~~~~~~~~  152 (167)
T 2oh3_A           82 VGDENDIHYLMTPYHALRYARDNEIRGMEYYKEA---AANSADPEVKRLGA-DFAAEEAEHVVALDKWIEKTPRP  152 (167)
T ss_dssp             SSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             hhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHccCc
Confidence            0  0110112468999999999999999998888   66679999999999 99999999999999998877544

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=99.07  E-value=7.4e-09  Score=86.70  Aligned_cols=139  Identities=14%  Similarity=0.139  Sum_probs=112.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeeccc--CCCCC-
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR-GGKVKLHSI--MQPPS-  169 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~R-GG~v~l~~I--~~P~~-  169 (261)
                      ...+.|+..+..|..+...|..+|.....     +.+++.|...|.+|++|+..|.+++..+ |+.+.+..-  ..|.. 
T Consensus        20 ~~~e~L~~A~~~E~~a~~~Y~~~A~~~~~-----~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~~~~~~~~~   94 (175)
T 2fzf_A           20 SLEELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQ   94 (175)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHSCCC-----TTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhhhh
Confidence            47899999999999999999999998872     7899999999999999999999999987 444332210  00100 


Q ss_pred             -CCCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          170 -EFDH-AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       170 -~f~~-~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                       .+.. ....+..++++.|+..|+.....|..+.+.+   .|+.+..++. .++.++.+|.+.+..++..+...
T Consensus        95 ~~~~~~~~~~~~~~~L~~ai~~E~~a~~~Y~~~a~~~---~d~~~r~l~~-~ia~eE~~H~~~l~~~l~~l~~~  164 (175)
T 2fzf_A           95 PVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMV---KEEEKKRLMR-YLADMERGHYYTLRAEYELLLNW  164 (175)
T ss_dssp             CCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---CSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhC---CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhH
Confidence             0000 1113688999999999999999998887764   6899999999 99999999999999999999874

>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A

Probab=98.77  E-value=6.8e-08  Score=82.76  Aligned_cols=144  Identities=17%  Similarity=0.210  Sum_probs=117.4

Q ss_pred             HHHHHHHHHhHHHHHH-HHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee---------ecc
Q 024844           94 ECEAAINEQINVEYNV-SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK---------LHS  163 (261)
Q Consensus        94 ~~e~aLNeQIn~El~A-Sy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~---------l~~  163 (261)
                      ...+.|+..+.-|... ...|..++...+.+  |++.+|+.|+..|..|..||.++.+++...+|.+.         +..
T Consensus        24 ~T~eNL~~A~~GE~~E~~~~Y~~fA~~A~~E--G~~~IA~~F~~~A~~E~~HA~r~~kll~~l~~~~~~~~~~~~~~v~~  101 (179)
T 3qhb_A           24 NTDANAASSIEVEMYECDCMYPTFAEIARRS--GQPEIGAMFDAIAKEEGMHAQLLTKLYSELEVKDSAETLEAKRLVST  101 (179)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccc
Confidence            3568889999999999 78999999999965  99999999999999999999999999976655431         001


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKL-TNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~-vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                      ...|..... ....++.++|+.|...|.. .++.|-...++|.++++....+.+. .....+-.|.+.+...+.+|+++
T Consensus       102 ~~~p~~~~~-~T~eN~~~~L~~A~~GE~~E~~~mYp~fA~~A~eEG~~eiA~~F~-~ia~~Ek~H~~ry~~ll~~l~~~  178 (179)
T 3qhb_A          102 IESQIDAVA-SDSRGLRRALETALEVETIESQKTYPAFAKLAAEQGNMEVATAFE-AIVKSETKHANWVKRALENLLEV  178 (179)
T ss_dssp             HHHTHHHHH-HSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             ccccccccC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence            112210000 0112367789999999996 6888999999999999999999999 99999999999999999999875

>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}

Probab=98.75  E-value=4.4e-07  Score=76.57  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=108.8

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--ccCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--SIMQP  167 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--~I~~P  167 (261)
                      +-++++.+.||..+.-.+.....+....-+..  +..+..+..+|.++.++.++|+..+.+++...||.|.-.  .+..-
T Consensus        20 ~a~~~i~~~Ln~~LAd~~~Ly~k~k~~HWnV~--G~~F~~lH~~fee~y~e~~~~~D~iAERI~~LGg~P~~~~~~~~~~   97 (169)
T 4a25_A           20 DASSRLNAGLQEVLVDLTALHLQGKQAHWNIV--GENWRDLHLQLDTLVEAARGFSDDVAERMRAVGGVPDARPQTVAAS   97 (169)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhceeeE--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHh
Confidence            35688999999999999988888877666666  678999999999999999999999999999999988432  11110


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHH
Q 024844          168 PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKI  231 (261)
Q Consensus       168 ~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l  231 (261)
                      .......+..++.++++..+...+.+...+++++..|. .+|+.|.++|. .++.+..+++=.|
T Consensus        98 ~~~~~~~~~~~~~~mv~~l~~~~~~~~~~~r~~~~~ae-~~D~~T~dll~-~~~~~~EK~~WmL  159 (169)
T 4a25_A           98 RIGDVGPDEIDTRACVEAIVALVRHTVDTIRRVHDPID-AEDPASADLLH-AITLELEKQAWMI  159 (169)
T ss_dssp             CSCCCCSSCEEHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             cCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHH-HHHHHHHHHHHHH
Confidence            00000112246889999999999999999999999886 58999999999 8888776665333

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=98.39  E-value=1.7e-05  Score=65.28  Aligned_cols=135  Identities=16%  Similarity=0.149  Sum_probs=104.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCe-eee----cccC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGK-VKL----HSIM  165 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~-v~l----~~I~  165 (261)
                      -+....+.|...|..|..+...|..+|. ..     -|.+.+.|...|.+|+.|...|.++..  ++. +..    ..+.
T Consensus        11 ~~~~~~e~L~~Ai~~E~~~~~~Y~~lA~-~~-----~~~~k~lF~~LA~eE~~H~~~l~~l~~--~~~~~~~~~~l~~~~   82 (157)
T 1vjx_A           11 HHMKVSDILTVAIRLEEEGERFYRELSE-HF-----NGEIKKTFLELADQERIHAEIFRKMSD--QENWDEVDSYLAGYA   82 (157)
T ss_dssp             BSCBHHHHHHHHHHHHHHHHHHHHHHTT-SC-----CSHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHTCBCCSBC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHHHHHHHHHHHhhc--cCcchhHHHHHHhhh
Confidence            4456778999999999999999999999 54     478999999999999999999999843  222 211    1111


Q ss_pred             CCC--CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          166 QPP--SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       166 ~P~--~~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      ...  ..|..   ....+...+++.|+..|+.....|..+...   ..|+.+..++. .+..+.-+|...|..+++.
T Consensus        83 ~~~~f~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~~a~~---~~d~~~k~l~~-~la~eE~~H~~~l~~~~~~  155 (157)
T 1vjx_A           83 FYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDG---LVNSDAQKTVK-KIIDQEKEHLRKLLEMKRE  155 (157)
T ss_dssp             CCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCSHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            111  00110   022468999999999999999998887654   68999999999 9999999999999888764

>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}

Probab=98.37  E-value=2.6e-05  Score=64.39  Aligned_cols=135  Identities=12%  Similarity=0.086  Sum_probs=95.3

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      +.++++++..||+.|..+..+...|-.++.-.+     =|.+..+|...+.+...|+..|-.++...||.|...+-....
T Consensus         6 ~~~~~~~i~~Ln~Li~~~~D~~~gY~~aae~~~-----d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~~g~   80 (153)
T 4etr_A            6 QTNLDDTLDVLNDLLQTSKDGEAGFHACAEDLR-----DPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSFAGD   80 (153)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC---------
T ss_pred             HhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHH
Confidence            457789999999999999999999999888554     468999999999999999999999999999998754322111


Q ss_pred             --CCCCcc----ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHH
Q 024844          169 --SEFDHA----EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIA  232 (261)
Q Consensus       169 --~~f~~~----e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~  232 (261)
                        ..|...    ...+...+++.+..-|+.+...|.+..+   +.-++.+...|+ .-+.....+.+++.
T Consensus        81 ~hr~~~~lks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~---~~lp~~~r~ll~-~q~~~~~~~~d~~~  146 (153)
T 4etr_A           81 LHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALE---KSLPAEIHQVIE-RQYQGVLRHHDRVR  146 (153)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHHHHHHHHH---SCCCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh---ccCCHHHHHHHH-HHHHHHHHHHHHHH
Confidence              112110    0013467899999999999999999887   347888887777 43333344444443

>1zuj_A Hypothetical protein llacc01001955; oxidative stress, DPS, DNA binding, lactic acid bacteria, DN protein; 2.90A {Lactococcus lactis} SCOP: a.25.1.1

Probab=98.25  E-value=7.5e-05  Score=63.68  Aligned_cols=135  Identities=12%  Similarity=-0.016  Sum_probs=107.7

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------e-c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------L-H  162 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l-~  162 (261)
                      .+.+.+.||..+..-+.....+....-+-.     =|+|..+|.++.++.+++...+.+++...||.|.        + .
T Consensus        23 ~~~~~~~Ln~~LAd~~~Ly~k~~~~HWnV~-----G~~FH~~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s   97 (179)
T 1zuj_A           23 KPTAGAMLSHVLSNIFYEKISLMQAGLYAK-----SANYRIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHK   97 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccceeeE-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcC
Confidence            346788899888776666555554443332     3556889999999999999999999999999985        3 4


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .|+..+.++    ..++.++++..+..-..+...+++++.+|.+.+|+.|.++|. .++.+..+.+=.|+.++.
T Consensus        98 ~i~e~~~~~----~~~~~e~l~~l~~d~~~~~~~~r~~i~~a~e~~D~~Tadll~-~~~~~~EK~~WmL~a~L~  166 (179)
T 1zuj_A           98 FIENDPKAK----YWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLELAIR-KLYGYNLSIIPYFAGELG  166 (179)
T ss_dssp             SCCCCTTGG----GSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHT
T ss_pred             cCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            455444321    125789999999999999999999999999999999999999 899998888888877664

>1zs3_A Lactococcus lactis Mg1363 DPSA; oxidative stress, DNA binding, lactic acid bacteria, DNA binding protein; 2.70A {Lactococcus lactis} SCOP: a.25.1.1

Probab=98.23  E-value=7e-05  Score=64.01  Aligned_cols=134  Identities=13%  Similarity=0.051  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------e-cc
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------L-HS  163 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l-~~  163 (261)
                      +.+.+.||..+..-+.....+....-+-.     =|+|..+|.++..+.+++...+.+++...||.|.        + ..
T Consensus        25 ~~~~~~Ln~~LAd~~~Ly~k~k~~HWnV~-----G~~FH~~fee~y~~~~~~~D~iAERi~~LG~~p~~t~~e~~~~~s~   99 (182)
T 1zs3_A           25 PTAGAMLGHVLSNLFIENIRLTQAGIYAK-----SPVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKF   99 (182)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHCS-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccceeeE-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhcCc
Confidence            45778899887776666555554444333     3456889999999999999999999999999985        3 34


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      |+..+.++    ..++.++++..+..-..+...++.++.+|.+.+|+.|.++|. .++.+..+.+=.|+.++.
T Consensus       100 i~e~~~~~----~~~~~e~l~~L~~d~~~~~~~~r~~i~~A~e~~D~~Tadll~-~~~~~~EK~~WmL~a~L~  167 (182)
T 1zs3_A          100 ITEDPKAK----YWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVV-ELYGYNLQVIRNLAGDLG  167 (182)
T ss_dssp             CCCCGGGG----GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHhHHHHHH-HHHHHHHHHHHHHHHHhc
Confidence            44433321    135789999999999999999999999999999999999999 899998888888876664

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.23  E-value=5.1e-05  Score=71.29  Aligned_cols=137  Identities=14%  Similarity=0.147  Sum_probs=109.4

Q ss_pred             cccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC
Q 024844           88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP  167 (261)
Q Consensus        88 Rq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P  167 (261)
                      |-.-..++..+||..+.-|..+...|..++.     ++.-|++-+.|.+..++++.|+++|-+|+...||+|..+..-+-
T Consensus       204 ~~~~~~~~v~~ln~a~~ge~~~~~a~e~~a~-----~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~~  278 (365)
T 3fse_A          204 GGSTKGDIVRGLNTALGGERYSLEALEKYTE-----KESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIAN  278 (365)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC---
T ss_pred             cCCchhhhhHHHHHHhhcChhHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchhH
Confidence            6567788999999999999999999988887     45578999999999999999999999999999999996554321


Q ss_pred             -----CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          168 -----PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       168 -----~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                           ..-+.+   .|..++++.||..|+   ..+...++++...-||.+..+|+ +++.    +++++...+..|-|
T Consensus       279 ~~a~~~~~~~~---~~~~~~l~~al~~~~---~gi~~~~~l~~~~~dp~~~~i~~-~i~~----~l~~~e~~~~~l~~  345 (365)
T 3fse_A          279 QYAKVKTALTG---SDDIYQIRSALGDIQ---TGIGDIGNLCAMYTDPIATAIFK-EIYK----DLVKYEQRLVSLYR  345 (365)
T ss_dssp             ---------------CHHHHHHHHHHHHH---HHHHHHHHHTTTCSCHHHHHHHH-HHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcC---CChHHHHHHHhcchh---hhHHHHHHHHHhcCCHHHHHHHH-HHHH----HHHHHHHHHHHHHH
Confidence                 122222   578899999999997   56666777888999999999999 6555    77777777777754

>1o9i_A Pseudocatalase; oxidoreductase, hexamer, dimanganese catalase, metalloenzyme, preoxidase; HET: MES; 1.33A {Lactobacillus plantarum} SCOP: a.25.1.3 PDB: 1jkv_A 1jku_A

Probab=97.78  E-value=0.00075  Score=60.93  Aligned_cols=140  Identities=11%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             cHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec-----
Q 024844           92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGL-AKFFKESSEEEREHAEKFMEYQNLRGGKVKLH-----  162 (261)
Q Consensus        92 s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~Gf-AkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~-----  162 (261)
                      ++...++|-+|+   +-|+.++.+|+.-+.-+..     ++. ...|..-+.||+.|++.+-.-+++.++.....     
T Consensus        18 dp~~A~~L~e~~GG~~GElsAamqYl~Q~~~~~~-----~~~y~dLL~dIatEEl~HlEmva~~I~~L~~ga~~~~~~a~   92 (266)
T 1o9i_A           18 DPIMARRLQESLGGQWGETTGMMSFLSQGWASTG-----AEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLK   92 (266)
T ss_dssp             CHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHCCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHH
T ss_pred             CHHHHHHHHHHhCCCccHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCcchhhcc
Confidence            455556666664   6799999999999999982     466 88999999999999999999999997743211     


Q ss_pred             ----------------ccC-----CCCC----CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHH
Q 024844          163 ----------------SIM-----QPPS----EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAE  214 (261)
Q Consensus       163 ----------------~I~-----~P~~----~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~  214 (261)
                                      -+.     .|..    -|+.   ...+|+...|...+..|+.....+.+|++..   .|+.+.+
T Consensus        93 ~~p~~~~~~~g~n~~~~~~~g~g~~p~ds~G~pWt~~yv~~~Gdl~aDL~~niaaE~~Ar~~Y~rl~~~t---dDp~vkd  169 (266)
T 1o9i_A           93 RDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMT---EDEGVRD  169 (266)
T ss_dssp             HCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC---CCHHHHH
T ss_pred             cchhhHhhhcCCChHHHHhcCCCCCccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhHHH
Confidence                            010     1110    1111   1237899999999999999999999998875   5999999


Q ss_pred             HhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          215 FVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       215 FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      .|. ..+...+.|...+...+..+..
T Consensus       170 ~L~-fLi~RE~~H~~~f~~aLe~l~~  194 (266)
T 1o9i_A          170 MLK-FLLARETQHQLQFMKAQEELEE  194 (266)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence            999 8899999999999999998854

>2v8t_A Manganese-containing pseudocatalase; manganese catalase, oxidoreductase; 0.98A {Thermus thermophilus} PDB: 2v8u_A 2cwl_A

Probab=97.72  E-value=0.0012  Score=60.59  Aligned_cols=143  Identities=15%  Similarity=0.105  Sum_probs=110.8

Q ss_pred             cHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCeeeecc---
Q 024844           92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLR--GGKVKLHS---  163 (261)
Q Consensus        92 s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~R--GG~v~l~~---  163 (261)
                      ++...++|-+|+   +-|+.++.+|+.-+.-+... -.++-+...+..-+.||+.|++.+-.-+++.  |..+....   
T Consensus        19 dP~~A~~L~eq~GG~~GElsAamqYl~Qs~~~~~~-~~~~~~~dLL~dIatEEL~HlEmvat~I~~L~~Ga~~~~~~~~~   97 (302)
T 2v8t_A           19 DPNAAAAVQALLGGRFGEMSTLMNYMYQSFNFRGK-KALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGV   97 (302)
T ss_dssp             CHHHHHHHTHHHHSTTSHHHHHHHHHHHHHHCSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCCCCCCC
T ss_pred             CHHHHHHHHHHhCCCccHHHHHHHHHHHHccCCCC-cchHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCChhhhhccc
Confidence            445555666664   67999999999999999842 2355789999999999999999999999999  44433310   


Q ss_pred             --cCC----------------------CCC----CCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhH
Q 024844          164 --IMQ----------------------PPS----EFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM  212 (261)
Q Consensus       164 --I~~----------------------P~~----~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t  212 (261)
                        -..                      |..    -|+.   ...+|+...|...+..|......+.+|++..   .|+.+
T Consensus        98 ~~~~~p~~~a~~~~~~~~~i~~g~g~~p~ds~G~pWta~Yv~~~Gdl~aDL~~NiaAE~~Ar~~Y~rL~~~t---dDp~v  174 (302)
T 2v8t_A           98 DPASTPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEMT---DNPVA  174 (302)
T ss_dssp             CGGGCTTGGGGGSSCSHHHHTSSSCCCSBCTTSCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC---CCHHH
T ss_pred             ccccchHHHhhhcCCcHHHhhcCCCCCccCCCCCCCCcchhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CChhH
Confidence              001                      110    0111   1237899999999999999999999998875   59999


Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          213 AEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       213 ~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      .+.|. ..+...+.|...+...+..|.
T Consensus       175 kd~L~-fLi~RE~~H~~~f~~ALe~l~  200 (302)
T 2v8t_A          175 REMIG-YLLVRGGVHAAAYGKALESLT  200 (302)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence            99999 889999999999999999985

>1jm0_A Protein (four-helix bundle model); alpha-helical bundle, protein design, de novo protein; 1.70A {Synthetic} SCOP: k.8.1.1 PDB: 1jmb_A 1ovu_A 1ovv_A 1lt1_A 1ec5_A 1nvo_A 1ovr_A 2kik_A 1u7j_A 1y47_A 1mft_A 1u7m_A

Probab=96.12  E-value=0.0068  Score=41.23  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          181 YAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       181 ea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      ++++..|..|..+...|++.+.+       .|+++|+ .+|.+..+|++++.+.+.
T Consensus         2 EmL~~DL~~E~~~i~~l~eai~~-------vsr~lle-~iL~dEEeH~dwLetql~   49 (50)
T 1jm0_A            2 DYLRELLKLELQAIKQYREALEY-------VKLPVLA-KILEDEEKHIEWLETILG   49 (50)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-------HCCHHHH-HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence            58999999999999999999998       8999999 999999999999988753

>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A

Probab=96.08  E-value=0.27  Score=45.63  Aligned_cols=150  Identities=15%  Similarity=0.193  Sum_probs=108.7

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHH-hhcc-cCCcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALY-AYFD-RDNIA--LRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmA-a~Fd-rd~v~--L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      ..+++.+..+|---.-.| .+.=.|+.+- .+|. +++.|  -.+++.|-.....||-.|+.-|.+|+.--|. |....+
T Consensus        63 ~~l~d~~~v~lv~~~iTE-d~LPtY~~~L~~~fgvrd~~g~~~~~w~~w~~~WtaEEnrHg~aL~~YL~lsgr-vDp~~l  140 (338)
T 2uw1_A           63 KEIPDDYFVVLVGDMITE-EALPTYMSMLNRCDGIKDETGAEPSAWAMWTRAWTAEENRHGDLLNKYLYLSGR-VDMRKI  140 (338)
T ss_dssp             TTSCHHHHHHHHHHHHHH-HTHHHHHHHHTTSTTTSCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-SCHHHH
T ss_pred             ccCCHHHHHHHHHHHHhh-hcchHHHHHHHHHcCcccccCCCcchHHHHhhhHhHHHHHHHHHHHHHHHHhcC-CCHHHH
Confidence            457777776665555555 4455565544 4442 22222  5789999999999999999999999997553 332222


Q ss_pred             CCCC-----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          165 MQPP-----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       165 ~~P~-----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ..-.     .+|+.....+++..|-...-.|+.+.-.+.++.++|.+.+||.+...+. ..-.++..|.+-..+++..+-
T Consensus       141 E~~~~~~i~~Gfd~~~~~~p~~~~vy~sfQE~AT~vsh~n~~r~A~~~gdPvLa~i~~-~IA~DE~RH~~~Y~~~v~~~l  219 (338)
T 2uw1_A          141 EKTIQYLIGSGMDIKSENSPYLGFIYTSFQERATFISHANTAKLAQHYGDKKLAHICG-SIASDEKRHATAYTKIVEKLA  219 (338)
T ss_dssp             HHHHHHHHHHCCCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            1100     1232211135889999999999999999999999999999999999999 899999999999999998764


Q ss_pred             hc
Q 024844          240 MV  241 (261)
Q Consensus       240 r~  241 (261)
                      .+
T Consensus       220 e~  221 (338)
T 2uw1_A          220 EI  221 (338)
T ss_dssp             HH
T ss_pred             hh
Confidence            44

>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9

Probab=95.76  E-value=0.63  Score=39.15  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      +.-.++||..+..|+.+.|.|=..+.+.+.+   ....+.   ....+.|.|.+.|+.-+.++||.+..     |...|.
T Consensus        20 ~~d~~aL~~ALaaEhaAIyaYGv~~a~l~~~---~~~~a~---~~~~~HrarRD~L~~~l~~~G~~pp~-----a~aaY~   88 (170)
T 2ib0_A           20 SADNAALCDALAVEHATIYGYGIVSALSPPG---VNFLVA---DALKQHRHRRDDVIVMLSARGVTAPI-----AAAGYQ   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGG---GHHHHH---HHHHHHHHHHHHHHHHHHHTTCCCCC-----CCSSCC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhccChH---HHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCC-----CcCcCC
Confidence            3446799999999999999999999988843   333333   33367888999999999999998642     222222


Q ss_pred             cc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHH
Q 024844          173 HA-EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQ  224 (261)
Q Consensus       173 ~~-e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQ  224 (261)
                      -+ +-.|.-.+..++..+|......++.+...+   .|..++.|-- ..|.+-
T Consensus        89 lP~~v~d~asa~~lAa~lE~~~A~ay~~~v~~a---~~~~~R~~A~-~aL~~a  137 (170)
T 2ib0_A           89 LPMQVSSAADAARLAVRMENDGATAWRAVVEHA---ETADDRVFAS-TALTES  137 (170)
T ss_dssp             CSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHC---CSHHHHHHHH-HHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc---CCHHHHHHHH-HHHHHH
Confidence            11 236789999999999999999999887653   6688888877 455443

>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2

Probab=95.52  E-value=0.64  Score=41.92  Aligned_cols=143  Identities=12%  Similarity=0.033  Sum_probs=98.4

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ..+++....+|---.-.| .+.=.|+.+=.-+...  . ++++.|......||-.|+.-|.+|+.- -|++....+..-.
T Consensus        59 ~~L~d~~~~~l~~~~itE-d~LP~Y~~~L~~~~~~--d-~~w~~w~~~WtaEE~rHg~aL~~YL~~-sg~vdp~~lE~~~  133 (275)
T 1za0_A           59 STLPRTITDACEILLILK-DNLAGHHRELVEHFIL--E-DWWGRWLGRWTAEEHLHAIALREYLVV-TREVDPVANEDVR  133 (275)
T ss_dssp             CCSCHHHHHHHHHHHHHH-HC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCSCTTTTTCTT
T ss_pred             ccCCHHHHHHHHHHHHHh-hcchHHHHHHHHhcCC--C-chHHHHhhhHhHHHHHHHHHHHHHHHH-hCCCCHHHHHHHH
Confidence            457888877776666666 4444555544333321  1 679999999999999999999999995 4557766665432


Q ss_pred             -----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          169 -----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       169 -----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                           ..|+.. ..++...|-...-.|+.+...+.++.   ...+||.+...+. ..-.++..|.+-..+++..+-..
T Consensus       134 ~~~i~~g~~~~-~~~p~~~~vy~~fqE~aT~v~y~n~a---~~~~dPvL~~i~~-~IA~DE~RH~~~y~~~v~~~le~  206 (275)
T 1za0_A          134 VQHVMKGYRAE-KYTQVETLVYMAFYERCGAVFCRNLA---AQIEEPILAGLID-RIARDEVRHEEFFANLVTHCLDY  206 (275)
T ss_dssp             C-----------CCCHHHHHHHHHHHHHHHHHHHHHHH---HHCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHH---HhcCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence                 245443 34688888888889999988888887   4579999999999 89999999999999998876444

>2gs4_A Protein YCIF; stress proteins, rubrerythrin, metal binding protein; 2.00A {Escherichia coli} SCOP: a.25.1.4

Probab=95.30  E-value=1.1  Score=37.39  Aligned_cols=138  Identities=15%  Similarity=0.111  Sum_probs=108.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecccC----
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL-RGGKVKLHSIM----  165 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~-RGG~v~l~~I~----  165 (261)
                      +.+-....|.+.+..|-++.-.|-.|+.-..     -|.+..-|..+..|-+.|.++|=+-+.. +|+.|.-...+    
T Consensus         6 l~dlf~~~L~D~y~aE~q~~~al~~~~~~a~-----~p~Lk~~l~~h~~eT~~qi~rLe~i~~~~lg~~~~~~~c~am~g   80 (166)
T 2gs4_A            6 IEDVFIHLLSDTYSAEKQLTRALAKLARATS-----NEKLSQAFHAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEG   80 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHH
Confidence            4566788999999999999999999998665     3899999999999999999999998888 89877532200    


Q ss_pred             ------CCCCCCCccccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          166 ------QPPSEFDHAEKGDALYAME--LALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       166 ------~P~~~f~~~e~~d~lea~e--~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                            ....++..   +.++++.-  .+...|..-+..|..|..+|..-++......|+ .-|+|....-++|.++...
T Consensus        81 li~e~~~~~~~~~~---~~vlda~li~aaq~~EhyEIA~YgtL~a~A~~lG~~~~~~lL~-~~L~EE~~~d~~L~~la~~  156 (166)
T 2gs4_A           81 LIEEANEVIESTEK---NEVRDAALIAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLK-ETLEEEKATDIKLTDLAIN  156 (166)
T ss_dssp             HHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                  00111211   23455544  555999999999999999999999999999999 7888887777777776643

>2gyq_A YCFI, putative structural protein; structural genomics, APC6105, iron-binding, PSI, protein STR initiative; 1.40A {Rhodopseudomonas palustris} SCOP: a.25.1.4

Probab=94.99  E-value=1.4  Score=36.98  Aligned_cols=137  Identities=16%  Similarity=0.122  Sum_probs=106.4

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC----
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM----  165 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~----  165 (261)
                      .+.+-....|.+.+..|-++.-.|-.|+.-..     -|.+..-|..+-+|-+.|.++|=+-+..+|+.|.-...+    
T Consensus        12 ~l~dlf~~~L~Diy~aE~q~~~aL~~~~~~a~-----~p~Lk~~l~~H~~eT~~qi~rLe~i~~~lg~~~~~~~c~am~g   86 (173)
T 2gyq_A           12 TMEDLLLHGLRDIYYAEQQITKALPKMIEQAT-----NRDLSQGLTSHLEETQKQIERLDQVFKKLGQKPSGVNCPAIDG   86 (173)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCSCCCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchHHHH
Confidence            46677889999999999999999999999766     289999999999999999999999999999877532100    


Q ss_pred             ------CCCCCCCccccCCHHHHHH--HHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          166 ------QPPSEFDHAEKGDALYAME--LALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       166 ------~P~~~f~~~e~~d~lea~e--~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                            ....++..   +.++++.-  .+...|..-+..|..|..+|..-++......|+ .-|+|....-++|.++.
T Consensus        87 li~e~~~~~~~~~~---~~v~da~li~aaq~~EhyEIA~YgtL~a~A~~lG~~e~~~lL~-~~L~EE~~~d~~L~~la  160 (173)
T 2gyq_A           87 LIKEADETAGEIAD---KTVLDAAIVANAQAVEHYEIARYGTLIAWAEELGHDDIVRFLT-TNLNEEKAANTKLNTVA  160 (173)
T ss_dssp             HHHHHHHHHHTBCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence                  00011211   23455544  555999999999999999999999999998988 77777766666665543

>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}

Probab=94.76  E-value=1.6  Score=36.63  Aligned_cols=142  Identities=10%  Similarity=0.066  Sum_probs=109.6

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc------
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS------  163 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~------  163 (261)
                      |..+-....|.+....|-++--.--.|+.-..    ..|.+..-|..+..|=++|.++|=+-+...|+.|.-..      
T Consensus         5 ~~~dlfi~~L~Diy~aE~Q~~~aL~~ma~~~a----~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k~~m~gl   80 (171)
T 3ogh_B            5 NRIEHYHDWLRDAHAMEKQAESMLESMASRID----NYPELRARIEQHLSETKNQIVQLETILDRNDISRSVIKDSMSKM   80 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccchHHHHHH
Confidence            45556677888888888888777777776443    47899999999999999999999999999999876322      


Q ss_pred             ---cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          164 ---IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       164 ---I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                         .......+..   +.++++.-.+...|..=+..|..|+.+|..-++......|+ .-|+|...--++|..++..+-
T Consensus        81 i~e~~~~~~~~~~---d~v~d~~laaq~vEHyEIA~YgtL~a~A~~lG~~e~a~lL~-~~L~EE~~~a~~L~~~l~~lt  155 (171)
T 3ogh_B           81 AALGQSIGGIFPS---DEIVKGSISGYVFEQFEIACYTSLLAAAKNAGDTASIPTIE-AILNEEKHMADWLIQHIPQTT  155 (171)
T ss_dssp             C---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHhCHHHH
Confidence               1111112221   23455544688899999999999999999999999999999 899999999999998888774

>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea}

Probab=94.62  E-value=0.22  Score=38.23  Aligned_cols=57  Identities=19%  Similarity=0.273  Sum_probs=49.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG  156 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG  156 (261)
                      ++..++. -|..|+.|.+.|..++.-++     -|.+-+.|..-++||.+|+-.|++.+..+.
T Consensus        19 d~~Rai~-sl~~EleAI~~Y~q~a~~~~-----d~~~k~vl~~i~~EEkeH~g~~lelLrr~D   75 (95)
T 3k6c_A           19 DMHRAII-SLREELEAVDLYNQRVNACK-----DKELKAILAHNRDEEKEHAAMLLEWIRRCD   75 (95)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3666776 56789999999999999988     357889999999999999999999998876

>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A

Probab=94.45  E-value=0.25  Score=37.91  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG  156 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG  156 (261)
                      ++.-+|. -|-.|+.|.+.|..++.-++.     |.+-+.+...++||++|+-.|.+++....
T Consensus        19 d~~rai~-aL~~EleAI~~Y~q~A~~t~D-----~evk~vl~~iadEEkeH~g~~l~~Lrr~d   75 (95)
T 1zpy_A           19 DMHRAII-SLREELEAVDLYNQRVNACKD-----KELKAILAHNRDEEKEHAAMLLEWIRRCD   75 (95)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4555676 555899999999999999983     57888999999999999999999998763

>2itb_A TRNA-(MS(2)IO(6)A)-hydroxylase, putative; putative ATTH, structural genomics, joint center for structu genomics, JCSG; 2.05A {Pseudomonas putida} SCOP: a.25.1.7

Probab=92.83  E-value=4.3  Score=35.06  Aligned_cols=139  Identities=13%  Similarity=0.188  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC--
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE--  170 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~--  170 (261)
                      .+....|-++.+.|..|+.+=++|=..|-    ..+.+..-+-..+.||+.|=+++++.+.+||  +.+.++.+++-.  
T Consensus        26 ~nl~~iL~DHA~CE~KAA~tAm~Li~rYp----~~~~Lv~~m~~LarEEL~HFeqVl~im~~Rg--i~l~~~~~~~Ya~~   99 (206)
T 2itb_A           26 ADQETLLIDHKNCEFKAASTALSLIAKYN----THLDLINMMSRLAREELVHHEQVLRLMKRRG--VPLRPVSAGRYASG   99 (206)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCCCCCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCCCCCHHHHH
Confidence            45677899999999999998888755553    4789999999999999999999999999999  666666665420  


Q ss_pred             -CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          171 -FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       171 -f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                       ....-++.+...+..-|--=--=..+=.....+|....|. +..|-. .++..+..|-   .+++.--+..+
T Consensus       100 L~k~vr~~ep~~l~D~Llv~AlIEARSCERF~lLa~~l~d~-L~~FY~-~Ll~SEArHy---~~yl~LA~~y~  167 (206)
T 2itb_A          100 LRRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHLDEE-LGRFYH-GLLKSEARHY---QGYLKLAHNYG  167 (206)
T ss_dssp             HHTTSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHH-HHHHHH-HHHHHHHHHH---HHHHHHHHHHS
T ss_pred             HHHHccCCChHHHHHHHHHHHHHHHHhHHHHHHHHhcCcHH-HHHHHH-HHHHHHhhHH---HHHHHHHHHHc
Confidence             0001112222222222211111122223455566777777 888888 7777666554   34444444443

>3hl1_A Ferritin like protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Caulobacter vibrioides}

Probab=91.88  E-value=0.9  Score=41.78  Aligned_cols=68  Identities=13%  Similarity=0.068  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS  163 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~  163 (261)
                      +++..+|+..|.+|+...-.||...+--+..  + ...+.-.+.-+.|||-|.....+-++..||.|.+..
T Consensus         9 ~~L~~~Lq~Ai~lE~stIp~YL~a~ySi~~~--n-~~~~~~i~~V~~eEMlHl~l~aNll~AiGg~p~~~~   76 (317)
T 3hl1_A            9 PRLYQHFQGAIDLELWTIPYYLTVLYSIKDP--T-TVPYRLIQAAVYQEMLHAQLVSNIANAYGYSPTLSA   76 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHBSCT--T-SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence            4788999999999999999999877766643  2 367889999999999999999999999999988753

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=91.46  E-value=1  Score=36.35  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=52.1

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ....+..+|...|..|..+...|..++..+..     +..-+.|...+.+|++|...|.+++..
T Consensus        97 ~~~~~~~~l~~ai~~E~~a~~~Y~~~a~~~~d-----~~~k~l~~~la~eE~~H~~~l~~~~~~  155 (157)
T 1vjx_A           97 KDLTLKEVLDIAISVEKDSIILYYELKDGLVN-----SDAQKTVKKIIDQEKEHLRKLLEMKRE  155 (157)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33457889999999999999999999998872     689999999999999999999988764

>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris PV. campestris STR. ATCC 33913, structural genomics, PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}

Probab=90.70  E-value=6.5  Score=32.68  Aligned_cols=140  Identities=11%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC--CC---CC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM--QP---PS  169 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~--~P---~~  169 (261)
                      ....|.+....|-++--.--.|+.-..    ..|.+..-|..+..|=+.|.++|=+-+...|..|.-..-.  .-   -.
T Consensus         7 f~~~L~Diy~aE~Q~~~aL~~ma~~~a----~~peLk~a~e~Hl~eT~~qi~rLe~vf~~lg~~~~~~k~~m~gli~e~~   82 (166)
T 3hiu_A            7 LVKWLQDAYAMEKEAETMMAAMASRIE----HYPELKRRIEQHVEETQQQSAGVQRCLELLNGSIPTAKGMLSSVLASMH   82 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCS----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCchHHHHHHHHHH
Confidence            456677777777777766667765333    4789999999999999999999999999999887643211  00   00


Q ss_pred             CCCcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          170 EFDHA-EKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       170 ~f~~~-e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      .+... ..+.++++.-.+...|..=+..|..|+.+|..-++......|+ .-|+|...--++|.+++..+-
T Consensus        83 ~~~~~~~~d~v~d~~laaq~vEHyEIA~YgtL~a~A~~lG~~e~a~lL~-~~L~EE~~~a~~L~~~l~~lt  152 (166)
T 3hiu_A           83 AAGNSMMTDEVTKGVGISYAFEHLEIASYRALVVAARSAGEQEVAQICE-DILQQEIEMAEWLIEHQEAIV  152 (166)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHhhCHHHH
Confidence            11110 1123555544888899999999999999999999999999999 899999999999998888774

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=90.65  E-value=1.5  Score=35.52  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      +++.+++..|+..|+.....|..+.+.....+|+.+...+. ++-.++.+|.+.+.++...
T Consensus         4 ~~~~e~L~~Ai~~E~~~~~~Y~~lA~~~~~~~~~~~k~~f~-~LA~eE~~H~~~l~~~~~~   63 (167)
T 2oh3_A            4 YTLAEFLAHAIALETEAAERYVELADMMEAHNNLDTATVFR-DMARFSTLHGDEIKQRSRA   63 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999777899999999999 9999999999999888655

>4di0_A Rubrerythrin; ssgcid, seattle structural genomics center for infectious DI peroxidase, oxidoreductase; 1.90A {Burkholderia pseudomallei}

Probab=90.58  E-value=0.72  Score=37.38  Aligned_cols=58  Identities=16%  Similarity=0.298  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhHHHHHHH-HHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           94 ECEAAINEQINVEYNVS-YVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN  153 (261)
Q Consensus        94 ~~e~aLNeQIn~El~AS-y~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n  153 (261)
                      ...+.|...+.-|..+. ..|..++.....+  |.+..+.+|+..+..|..|+.++.+.+.
T Consensus        82 ~T~enL~~A~~GE~~e~~~~Y~~~a~~A~~e--G~~~ia~~f~~~a~~E~~Ha~~~~~~l~  140 (144)
T 4di0_A           82 TSRQNLQSAIAGETHEYTDMYPGMAKTARDE--GFEEIANWFETLAKAERSHANRYTKALD  140 (144)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHHHHHC--CcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34677888899999995 6999999999954  9999999999999999999999988775

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=89.25  E-value=1.3  Score=35.24  Aligned_cols=60  Identities=22%  Similarity=0.276  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHhHHHHHH-HHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           93 DECEAAINEQINVEYNV-SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~A-Sy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ..+.+.|...+..|..+ .-.|..++..+..  .+.+..+.+|+..+.+|.+|+..+-+.+..
T Consensus        79 ~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~--egd~~~~~~f~~i~~~E~~H~~~~~~~l~~  139 (144)
T 1j30_A           79 GTLEQMIESAIAGETYEWTQMYPGFAKVARE--EGFPEVAEWFETLARAEKSHAEKFQNVLKQ  139 (144)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999 7999999999994  589999999999999999999999877753

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=89.12  E-value=2.2  Score=34.60  Aligned_cols=58  Identities=14%  Similarity=0.100  Sum_probs=51.9

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ...+..+|...|..|..+...|..++....  +   +...+.|...+.+|..|...|-+++..
T Consensus       103 ~~~~~~~L~~ai~~E~~a~~~Y~~~a~~~~--d---~~~r~l~~~ia~eE~~H~~~l~~~l~~  160 (175)
T 2fzf_A          103 VQDIIDLIRWAMKAEEIAAEFYLKLEEMVK--E---EEKKRLMRYLADMERGHYYTLRAEYEL  160 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC--S---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHhhCC--C---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999876  2   789999999999999999999887765

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=88.60  E-value=1.9  Score=33.38  Aligned_cols=65  Identities=12%  Similarity=0.154  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCee
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKV  159 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v  159 (261)
                      ....+.|...+..|-.+.-.|..+...++.  .+=++...+|.....+|.+|+..|-.++.+-+|.+
T Consensus        84 ~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~--~~D~~t~~~l~~~~~eee~h~~~l~~~l~~~~~~~  148 (149)
T 2qqy_A           84 EDVREMLEYARQSEYETIKRYEKRKEQAAN--LNMTELVVKLEDMIADETNHMEELDRLLNDKAMVL  148 (149)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            356788899999999999999999999873  46789999999999999999999999887666543

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=86.55  E-value=3.4  Score=33.41  Aligned_cols=60  Identities=12%  Similarity=0.153  Sum_probs=54.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ...+.+..++..|......|...+..+...+-+.+..|++ ..-.+..+|.+.+.+++..+
T Consensus        11 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~eE~~Ha~~l~e~i~~l   70 (179)
T 1nfv_A           11 KVIEVLNKARAMELHAIHQYMNQHYSLDDMDYGELAANMK-LIAIDEMRHAENFAERIKEL   70 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999888899999999 88888899999999888765

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=86.51  E-value=4.2  Score=31.78  Aligned_cols=60  Identities=5%  Similarity=-0.012  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ...+.+..++..|......|...+..+...+-+.+..|++ ..-.|..+|.+.+.+++..+
T Consensus         6 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~ee~~Ha~~l~e~i~~l   65 (158)
T 2y3q_A            6 KVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEY-HESIDEMKHADRYIERILFL   65 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999999888889999999 78888889999998888775

>2e0z_A Virus-like particle; bacteriophage, HK97; 3.60A {Pyrococcus furiosus}

Probab=86.02  E-value=0.15  Score=47.54  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG  156 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG  156 (261)
                      .+++..+|...|..|+.+...|..++...+..     ..-+.|...++||++|+..|.+.+...+
T Consensus        17 ~~el~~air~ai~~E~eAi~~Y~q~A~~~~d~-----~~K~vl~~ia~EEk~H~~~f~~ll~~l~   76 (345)
T 2e0z_A           17 KEELMEILRLAIIAELDAINLYEQMARYSEDE-----NVRKILLDVAREEKAHVGEFMALLLNLD   76 (345)
T ss_dssp             -----------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44677899999999999999999999998843     5778999999999999999998887765

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=85.65  E-value=4.9  Score=31.50  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ...+.+..++..|......|...+..+...+-+.+..|++ ..-.+..+|.+.+.+++..+-
T Consensus         6 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~ee~~Ha~~l~e~i~~lg   66 (161)
T 1jgc_A            6 KVIEFLNAALRSELTAISQYWVHFRLQEDWGLAKMAKKSR-EESIEEMGHADKIIARILFLE   66 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHcC
Confidence            4678999999999999999999999999888889999999 778888899998888877653

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=84.94  E-value=2.7  Score=39.03  Aligned_cols=64  Identities=20%  Similarity=0.397  Sum_probs=54.0

Q ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          172 DHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       172 ~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ....+++.+.++..++..|..-   +..+-..|.+..|+.+...|+ +++.+..+|+..|..++.++-
T Consensus       204 ~~~~~~~~v~~ln~a~~ge~~~---~~a~e~~a~~~~d~~~~~~~~-~i~~~~~~h~~~l~~~~~~~g  267 (365)
T 3fse_A          204 GGSTKGDIVRGLNTALGGERYS---LEALEKYTEKESDVEAKALFQ-EMITNKQRHIEYLETYLTRLG  267 (365)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCchhhhhHHHHHHhhcChhH---HHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence            3334567889999999999887   555556678899999999999 999999999999999998863

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=84.89  E-value=4.2  Score=32.49  Aligned_cols=61  Identities=13%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN  153 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n  153 (261)
                      ..+.+.+.+...+..|..+.-.|..+...+.  ..+-+..+.||..-..+|.+|+..|-+++.
T Consensus        79 ~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~--~~~D~~t~~~l~~il~eEeeH~~~l~~~L~  139 (159)
T 4am5_A           79 IGQTVKEVLESDLAAEREARALYQEGAAYAA--SVGDFPSKNLFEELMGDEEHHIDFLETQLD  139 (159)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999999999999  458899999999999999999988765554

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=84.23  E-value=10  Score=32.16  Aligned_cols=62  Identities=18%  Similarity=0.186  Sum_probs=56.5

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       176 ~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      .++..+.|..++..|-.....|....++|++++-.....++. ..-.++..|.+.+.+++..+
T Consensus        26 ~g~T~~nL~~a~~gE~~a~~~Y~~~A~~A~~eG~~~iA~~F~-~~A~~E~~HA~~~~~~l~~l   87 (202)
T 1yuz_A           26 VGSTLENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFE-ATAAAELIHIGLEYALVAEM   87 (202)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            356789999999999999999999999999999999999999 88888899999888888865

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=83.36  E-value=7.3  Score=30.11  Aligned_cols=60  Identities=8%  Similarity=0.016  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      ...+++..++..|......|...+..+...+-+.+..|+. .-..+..+|.+.+.+++..+
T Consensus         6 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~eE~~Ha~~l~e~i~~l   65 (155)
T 2fkz_A            6 IVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEY-HESIDEMKHADKLIKRILFL   65 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            4678999999999999999999999998888888888887 45556688888888887765

>3qhb_A Symerythrin, ORF180; four-helix bundle, carboxylate bridged-DIIRON, ferritin-like superfamily, metal transport; 1.20A {Cyanophora paradoxa} PDB: 3qhc_A 3sid_A

Probab=83.31  E-value=3.9  Score=34.47  Aligned_cols=60  Identities=17%  Similarity=0.112  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHhHHHHHH-HHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           93 DECEAAINEQINVEYNV-SYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~A-Sy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      +.+...|...|.-|..- .-+|-.++.....+  |.+..+.+|+..+..|..|+.++-+.+..
T Consensus       114 eN~~~~L~~A~~GE~~E~~~mYp~fA~~A~eE--G~~eiA~~F~~ia~~Ek~H~~ry~~ll~~  174 (179)
T 3qhb_A          114 RGLRRALETALEVETIESQKTYPAFAKLAAEQ--GNMEVATAFEAIVKSETKHANWVKRALEN  174 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34666788999999985 67899999999965  99999999999999999999998876653

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=81.24  E-value=8.9  Score=30.67  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ...+.+..++..|......|...+..+...+=+.+..|++ ..-.|..++.+.+.+++..+.
T Consensus         8 ~~~~~Ln~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~eE~~Ha~~l~e~i~~lg   68 (174)
T 3qb9_A            8 DVLRLLNEQLTSELTAINQYFLHSKMQDNWGFTELAAHTR-AESFDEMRHAEEITDRILLLD   68 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHCC
Confidence            4688999999999999999999999998888889999999 778888899999888887763

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=80.72  E-value=11  Score=29.68  Aligned_cols=60  Identities=13%  Similarity=0.150  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ....+.|...+..|..+...|..+...++.  .+-++.+.||.....+|-+|+..|-+++..
T Consensus        83 ~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~--~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  142 (161)
T 3uoi_A           83 QTLREQFEADLAIEYDVLNRLKPGIVMCRE--KQDTTSAVLLEKIVADEEEHIDYLETQLEL  142 (161)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467788889999999999999999998884  478899999999999999999998887654

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=80.24  E-value=7.5  Score=30.38  Aligned_cols=61  Identities=11%  Similarity=0.045  Sum_probs=52.5

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHH-HHHHHHHHHHHHH
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEE-EREHAEKFMEYQN  153 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~E-EreHAekLi~Y~n  153 (261)
                      ..+.+.+.|...+..|..+...|..+...++.  .+=++.+.||.....+ |.+|+..|-+++.
T Consensus        78 ~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~--~~D~~t~~~l~~~~~e~ee~h~~~l~~~l~  139 (154)
T 3r2k_A           78 PGTTVPEMLEADLKLERHVRAALAKGIALCEQ--HKDFVSRDILKAQLADTEEDHAYWLEQQLG  139 (154)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33457788888999999999999999999984  4788999999999999 9999998877664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d1z6oa1	200	a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(	3e-57
d1z6om1	191	a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(T	5e-57
d1bg7a_	173	a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb	7e-54
d1rcda_	171	a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesb	2e-53
d1lb3a_	179	a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus)	6e-52
d1r03a_	171	a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens),	9e-52
d1s3qa1	162	a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Arch	1e-43
d1euma_	161	a.25.1.1 (A:) Non-hem ferritin {Escherichia coli,	7e-43
d1vlga_	164	a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritim	1e-42
d1krqa_	165	a.25.1.1 (A:) Non-hem ferritin {Campylobacter jeju	5e-41
d2htna1	158	a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1	3e-19
d1jgca_	160	a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rh	8e-18
d1nf4a_	169	a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {De	1e-16
d2fkza1	154	a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1	1e-15
d1yuza1	135	a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain	3e-08

>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]} Length = 200

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]

 Score =  179 bits (455), Expect = 3e-57
 Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 12/181 (6%)

Query: 87  ARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAE 146
                       +     +    SY Y    AYF+       G +K FK+ S+E      
Sbjct: 17  GEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTI 76

Query: 147 KFMEYQNLRGGKVKLHSIMQPPSEF-DHAEKGDALYAMELALSLEKLTNEKLLSLHSVAD 205
             +++   RG K+         +E  ++  +   L A+  AL  +K   E+   +H  A 
Sbjct: 77  DIIKHVTKRGDKMNFDQHSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREAT 136

Query: 206 RN----NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH-------GLWHFDQML 254
           RN    +DP++A+++E EF+ +  E I  +A + S L+     +        L+ FD+ L
Sbjct: 137 RNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDLKKFITANNGHDLSLALYVFDEYL 196

Query: 255 L 255
            
Sbjct: 197 Q 197

>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]} Length = 191

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

 Score =  178 bits (453), Expect = 5e-57
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 6/171 (3%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
             C  ++ +QI +E   S  Y A+ A+F +D +   G A+ F +++ EEREHA K +EY 
Sbjct: 19  RSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYL 78

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN---ND 209
            +RG      S +        +     + A+E ALS+E    + + ++    + +   ND
Sbjct: 79  LMRGELTNDVSSLLQVRPPTRSSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFND 138

Query: 210 PQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGKGH---GLWHFDQMLLHE 257
             + +++  +FL EQ +    +A   S L+ +   H   G + FD+ LL  
Sbjct: 139 YHLVDYLTGDFLEEQYKGQRDLAGKASTLKKLMDRHEALGEFIFDKKLLGI 189

>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 173

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

 Score =  170 bits (431), Expect = 7e-54
 Identities = 78/176 (44%), Positives = 110/176 (62%), Gaps = 7/176 (3%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ +  +CEAAIN  +N+E   SY Y ++  YFDRD+IAL  +AKFFKE S EEREH
Sbjct: 2   SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREH 61

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AEK M+ QN RGG++ L  + +P       E G+ L AM+ AL LEK  N+ LL LH V 
Sbjct: 62  AEKLMKDQNKRGGRIVLQDVQKPE----RDEWGNTLEAMQAALQLEKTVNQALLDLHKVG 117

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLLHE 257
               DP + +F+E+E+  EQV++I ++  Y++ L+ +G    G G + FD+  + E
Sbjct: 118 SDKVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLPQNGMGEYLFDKHTMGE 173

>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]} Length = 171

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

 Score =  168 bits (427), Expect = 2e-53
 Identities = 72/174 (41%), Positives = 112/174 (64%), Gaps = 7/174 (4%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ +  +CEA +N  +N++++ SYVY ++ +YF+RD++AL   AKFF+E SEEE+EH
Sbjct: 1   SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEH 60

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AEK +EYQN RGG+V L S+ +P       +  + L A++ AL L+K  N+ LL LH+VA
Sbjct: 61  AEKLIEYQNQRGGRVFLQSVEKPE----RDDWANGLEALQTALKLQKSVNQALLDLHAVA 116

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK---GHGLWHFDQMLL 255
              +DP M +F+ES +L E VE I K+  +++ L+ +     G   + F++  L
Sbjct: 117 ADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTL 170

>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  165 bits (418), Expect = 6e-52
 Identities = 66/182 (36%), Positives = 103/182 (56%), Gaps = 15/182 (8%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ Y  E EAA+N  +N+    SY Y +L  +FDRD++AL G+  FF+E +EE+RE 
Sbjct: 1   SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREG 60

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AE+ +E+QN RGG+     + +P       E G    AME AL++EK  N+ LL LH++ 
Sbjct: 61  AERLLEFQNDRGGRALFQDVQKPS----QDEWGKTQEAMEAALAMEKNLNQALLDLHALG 116

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK-----------GHGLWHFDQM 253
               DP + +F+ES +L ++V+ I K+  +++ LR V               G + F+++
Sbjct: 117 SARADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRVAGPQPAQTGAPQGSLGEYLFERL 176

Query: 254 LL 255
            L
Sbjct: 177 TL 178

>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]} Length = 171

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Human (Homo sapiens), mitocondial isoform [TaxId: 9606]

 Score =  164 bits (416), Expect = 9e-52
 Identities = 71/174 (40%), Positives = 102/174 (58%), Gaps = 7/174 (4%)

Query: 85  SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREH 144
           S  RQ +  + EAAIN QIN+E   SYVY ++  YF RD++AL   +++F   S EE EH
Sbjct: 1   SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEH 60

Query: 145 AEKFMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVA 204
           AEK M  QN RGG+++L  I +P       +    L+AME AL LEK  N+ LL LH++A
Sbjct: 61  AEKLMRLQNQRGGRIRLQDIKKPE----QDDWESGLHAMECALLLEKNVNQSLLELHALA 116

Query: 205 DRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG---KGHGLWHFDQMLL 255
               DP + +F+E+ +L EQV++I ++  +V  L  +G    G   + FD   L
Sbjct: 117 SDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAPDAGLAEYLFDTHTL 170

>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 162

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  143 bits (361), Expect = 1e-43
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 9/163 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           ++   A+N QIN E   +Y+Y ++ +YFD  +I L+G + + +   +EE  HA K  ++ 
Sbjct: 4   EKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFV 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           + RGG+VKL+++ +PPSE+D         A E     E    +++  L  +A +  D   
Sbjct: 62  SERGGRVKLYAVEEPPSEWDSPLA-----AFEHVYEHEVNVTKRIHELVEMAMQEKDFAT 116

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
             F++  ++ EQVE        V +LR++G+    L   D+ L
Sbjct: 117 YNFLQ-WYVAEQVEEEASALDIVEKLRLIGEDKRALLFLDKEL 158

>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]} Length = 161

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Escherichia coli, FtnA [TaxId: 562]

 Score =  141 bits (356), Expect = 7e-43
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 9/164 (5%)

Query: 92  EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEY 151
           + E    +NEQ+N+E   S +Y  + A+         G A F +  ++EE  H ++  +Y
Sbjct: 2   KPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHT--FEGAAAFLRRHAQEEMTHMQRLFDY 59

Query: 152 QNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQ 211
               G   +++++  P +E+   ++       +     E+L  +K+  L   A  N D  
Sbjct: 60  LTDTGNLPRINTVESPFAEYSSLDE-----LFQETYKHEQLITQKINELAHAAMTNQDYP 114

Query: 212 MAEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQML 254
              F++  ++ EQ E        + +L + GK G GL+  D+ L
Sbjct: 115 TFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKEL 157

>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]} Length = 164

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Thermotoga maritima [TaxId: 2336]

 Score =  140 bits (355), Expect = 1e-42
 Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 9/163 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
           ++   A+N+Q+N E   SY+Y ++  YFD +    +G A + K+ ++EE  HA KF EY 
Sbjct: 6   EKVRKALNDQLNREIYSSYLYLSMATYFDAEG--FKGFAHWMKKQAQEELTHAMKFYEYI 63

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
             RGG+V+L +I +PPS ++  +      A E AL  E+   + + ++  +A    D   
Sbjct: 64  YERGGRVELEAIEKPPSNWNGIKD-----AFEAALKHEEFVTQSIYNILELASEEKDHAT 118

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWHFDQML 254
             F++  F+ EQVE  +++ + +  L     +   ++  D+ L
Sbjct: 119 VSFLK-WFVDEQVEEEDQVREILDLLEKANGQMSVIFQLDRYL 160

>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]} Length = 165

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Campylobacter jejuni [TaxId: 197]

 Score =  136 bits (344), Expect = 5e-41
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 9/164 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
            E    +NEQIN E   + +Y ++ ++   ++  L G   F    + EE +HA+K + Y 
Sbjct: 4   KEVVKLLNEQINKEMYAANLYLSMSSWCYENS--LDGAGAFLFAHASEESDHAKKLITYL 61

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
           N     V+L  + QP   F        L   E     E+   + + +L      + D   
Sbjct: 62  NETDSHVELQEVKQPEQNFK-----SLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYST 116

Query: 213 AEFVESEFLGEQVEAINKIAKYVSQLRMVGK-GHGLWHFDQMLL 255
             F++  ++ EQ E        V +++++G+ G+GL+  DQ + 
Sbjct: 117 FNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIK 159

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]} Length = 158

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

 Score = 80.1 bits (197), Expect = 3e-19
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 9/149 (6%)

Query: 94  ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153
           +    +N+ +  E      Y      F   N  L+ L       S +E +HA++++E   
Sbjct: 6   KVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERIL 63

Query: 154 LRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMA 213
              G   L  + +     D  E       +   L+LE    + L      AD  +D    
Sbjct: 64  FLEGLPNLQDLGKLNIGEDVEEM------LRSDLALELDGAKNLREAIGYADSVHDYVSR 117

Query: 214 EFVESEFLGEQVEAINKIAKYVSQLRMVG 242
           + +  E L ++   I+ +   +  ++ +G
Sbjct: 118 DMMI-EILRDEEGHIDWLETELDLIQKMG 145

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]} Length = 160

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 76.3 bits (187), Expect = 8e-18
 Identities = 23/149 (15%), Positives = 45/149 (30%), Gaps = 9/149 (6%)

Query: 94  ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN 153
           +    +N  +  E      Y   +   +  +  L  +AK  +E S EE  HA+K +    
Sbjct: 6   KVIEFLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARIL 63

Query: 154 LRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMA 213
              G   L  +          E       +E  L+ E    +             D    
Sbjct: 64  FLEGHPNLQKLDPLRIGEGPRE------TLECDLAGEHDALKLYREARDYCAEVGDIVSK 117

Query: 214 EFVESEFLGEQVEAINKIAKYVSQLRMVG 242
              E   + ++   ++ +   +S    +G
Sbjct: 118 NIFE-SLITDEEGHVDFLETQISLYDRLG 145

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]} Length = 169

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

 Score = 72.8 bits (178), Expect = 1e-16
 Identities = 27/155 (17%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 88  RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEK 147
           R+  + +    +N+   +E +  + Y  +  ++  D++    LA   K  + +E  HAE 
Sbjct: 2   REDRKAKVIEVLNKARAMELHAIHQY--MNQHYSLDDMDYGELAANMKLIAIDEMRHAEN 59

Query: 148 FMEYQNLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRN 207
           F E     GG+       +  +              E     E  T E       V    
Sbjct: 60  FAERIKELGGEPTTQKEGKVVTGQAVPV------IYESDADQEDATIEAYSQFLKVCKEQ 113

Query: 208 NDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG 242
            D   A   E   + E+   +       S ++ +G
Sbjct: 114 GDIVTARLFE-RIIEEEQAHLTYYENIGSHIKNLG 147

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]} Length = 154

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 9/145 (6%)

Query: 98  AINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGG 157
            +N+ +  E      Y      +  ++  L  L K     S +E +HA+K ++      G
Sbjct: 10  HLNKILGNELIAINQYFLHARMY--EDWGLEKLGKHEYHESIDEMKHADKLIKRILFLEG 67

Query: 158 KVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVE 217
              L  +                  +E  L LE+     L +  +  +   D    E +E
Sbjct: 68  LPNLQELG------KLLIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLE 121

Query: 218 SEFLGEQVEAINKIAKYVSQLRMVG 242
            + L  + + I+ +   +  +  +G
Sbjct: 122 -DILESEEDHIDWLETQLDLIDKIG 145

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Length = 135

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

 Score = 49.0 bits (116), Expect = 3e-08
 Identities = 15/135 (11%), Positives = 30/135 (22%), Gaps = 8/135 (5%)

Query: 93  DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQ 152
                 +   I  E      Y A              +A+ F+ ++  E  H        
Sbjct: 5   GSTLENLKAAIAGETGAHAKYTAFAKAAREQG--YEQIARLFEATAAAELIHIGLEYALV 62

Query: 153 NLRGGKVKLHSIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM 212
                  +  ++  P +                       T++   +    A    + + 
Sbjct: 63  AEMEPGYEKPTVAAPSAYSCDLNLISGANGEIYE------TSDMYPAFIRKAQEEGNSKA 116

Query: 213 AEFVESEFLGEQVEA 227
                   L E V A
Sbjct: 117 VHVFTRAKLAESVHA 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1rcda_	171	(Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId:	100.0
d1lb3a_	179	(Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1bg7a_	173	(Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId:	100.0
d1r03a_	171	(Apo)ferritin {Human (Homo sapiens), mitocondial i	100.0
d1z6oa1	200	(Apo)ferritin {Cabbage looper(Trichoplusia ni), L	100.0
d1z6om1	191	(Apo)ferritin {Cabbage looper(Trichoplusia ni), H	100.0
d1vlga_	164	Non-hem ferritin {Thermotoga maritima [TaxId: 2336	100.0
d1krqa_	165	Non-hem ferritin {Campylobacter jejuni [TaxId: 197	100.0
d1s3qa1	162	Non-hem ferritin {Archaeon Archaeoglobus fulgidus	100.0
d1euma_	161	Non-hem ferritin {Escherichia coli, FtnA [TaxId: 5	100.0
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	99.97
d1jgca_	160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	99.97
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	99.96
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	99.96
d1j30a_	141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	99.89
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	99.88
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	99.87
d1nnqa1	133	Rubrerythrin, N-terminal domain {Archaeon Pyrococc	99.57
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	99.4
d1o9ra_	162	Dodecameric ferritin homolog {Agrobacterium tumefa	99.34
d1jiga_	146	Dodecameric ferritin homolog {Bacillus anthracis,	99.26
d1ji5a_	142	Dodecameric ferritin homolog {Bacillus anthracis,	99.24
d1tjoa_	180	Dodecameric ferritin homolog {Archaeon Halobacteri	99.24
d1umna_	151	Dodecameric ferritin homolog {Streptococcus suis [	99.21
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	99.19
d2fjca1	151	Dodecameric ferritin homolog {Treponema pallidum,	99.15
d1n1qa_	149	Dodecameric ferritin homolog {Bacillus brevis, Dps	99.11
d1ji4a_	144	Dodecameric ferritin homolog {Helicobacter pylori,	99.05
d1dpsa_	159	Dodecameric ferritin homolog {Escherichia coli, Dp	98.89
d2bk6a1	150	Dodecameric ferritin homolog {Listeria innocua [Ta	98.89
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	98.87
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	98.72
d2yw6a1	141	Dodecameric ferritin homolog {Mycobacterium smegma	98.7
d1zs3a1	171	Dodecameric ferritin homolog {Lactococcus lactis,	98.41
d1zuja1	168	Dodecameric ferritin homolog {Lactococcus lactis,	98.37
d1jkva_	266	Manganese catalase (T-catalase) {Lactobacillus pla	96.92
d2cwla1	299	Manganese catalase (T-catalase) {Thermus thermophi	96.21
d1zpya1	91	Hypothetical protein NE0167 {Nitrosomonas europaea	95.25
d1za0a1	267	Possible acyl-[acyl-carrier protein] desaturase {M	94.88
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	94.67
d1afra_	345	delta 9-stearoyl-acyl carrier protein desaturase {	93.58
d2itba1	199	Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Ps	91.28
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	90.59
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	89.75
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	89.27
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	87.1
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	85.18
d1jgca_	160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	84.61
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	83.31
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	81.01

>d1rcda_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

Probab=100.00  E-value=8e-50  Score=337.95  Aligned_cols=167  Identities=43%  Similarity=0.773  Sum_probs=159.2

Q ss_pred             chhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           85 SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        85 s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      |++||||+++|+++||+|||.|++|||+|++||+||++++++||||++||+.+|+|||+||++|++|+++|||.|.+++|
T Consensus         1 ~~~r~n~~~e~~~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~Ha~~l~~yi~~rgg~~~~~~i   80 (171)
T d1rcda_           1 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSV   80 (171)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC-
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK-  243 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~-  243 (261)
                      ++|+..    +|.+++++|+.+|++||.+++.|++|+++|.+.+|+++++||+.+||+||+++++++++++++|+++|+ 
T Consensus        81 ~~~~~~----~~~s~~e~~~~al~~Ek~v~~~l~~l~~~a~~~~D~~~~~fle~~fl~eQ~e~~~~l~~~l~~l~~~~~~  156 (171)
T d1rcda_          81 EKPERD----DWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSS  156 (171)
T ss_dssp             CCCSCS----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            888752    346799999999999999999999999999999999999999967999999999999999999999983 


Q ss_pred             --CchhhHHhHHhh
Q 024844          244 --GHGLWHFDQMLL  255 (261)
Q Consensus       244 --g~g~ylfD~~L~  255 (261)
                        |+|+|+||++|+
T Consensus       157 ~~gl~~yl~D~~ll  170 (171)
T d1rcda_         157 HPGMAEYLFNKHTL  170 (171)
T ss_dssp             CHHHHHHHHHHHTC
T ss_pred             CchhHHHHHhHHhc
Confidence              578999999986

>d1lb3a_ a.25.1.1 (A:) (Apo)ferritin {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.8e-49  Score=338.23  Aligned_cols=168  Identities=39%  Similarity=0.693  Sum_probs=159.5

Q ss_pred             chhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           85 SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        85 s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      |++||||+++|+++||+|||.||+|||+|++||+||+++++++||||+||+.+|+|||+||++|++||++|||.|++++|
T Consensus         1 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~~~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i   80 (179)
T d1lb3a_           1 SQIRQNYSTEVEAAVNRLVNLHLRASYTYLSLGFFFDRDDVALEGVGHFFRELAEEKREGAERLLEFQNDRGGRALFQDV   80 (179)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeecCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhccC-
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVGK-  243 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g~-  243 (261)
                      ++|+..    +|.+++++|+.||++|+.+++.|++|+++|.+.+|++|++||++|||+||++++++++++|++|+|+|+ 
T Consensus        81 ~~~~~~----~~~~~~~~~~~aL~~Ek~v~~~l~~l~~~A~~~~D~~t~~fL~~~fl~eQ~e~~~~l~~~l~~l~ri~~~  156 (179)
T d1lb3a_          81 QKPSQD----EWGKTQEAMEAALAMEKNLNQALLDLHALGSARADPHLCDFLESHYLDKEVKLIKKMGNHLTNLRRVAGP  156 (179)
T ss_dssp             CCCSCS----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCc----ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            988753    346899999999999999999999999999999999999999889999999999999999999999972 


Q ss_pred             ----------CchhhHHhHHhhc
Q 024844          244 ----------GHGLWHFDQMLLH  256 (261)
Q Consensus       244 ----------g~g~ylfD~~L~~  256 (261)
                                |+|+|+|||+|++
T Consensus       157 ~~~~~~~~~~~lg~~lfD~~~~~  179 (179)
T d1lb3a_         157 QPAQTGAPQGSLGEYLFERLTLK  179 (179)
T ss_dssp             ----------CHHHHHHHHHTC-
T ss_pred             ccchhccCCccchhhhhhHHhcC
Confidence                      4799999999875

>d1bg7a_ a.25.1.1 (A:) (Apo)ferritin {Bullfrog (Rana catesbeiana) [TaxId: 8400]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Bullfrog (Rana catesbeiana) [TaxId: 8400]

Probab=100.00  E-value=7.9e-50  Score=338.58  Aligned_cols=169  Identities=46%  Similarity=0.789  Sum_probs=141.9

Q ss_pred             chhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           85 SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        85 s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      |++||||+++|+++||+|||.|++|||+|++||+||++++++|||||+||+.+|+|||+||++|++||++|||+|.+++|
T Consensus         2 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~s~EE~~HA~~l~~yl~~rgg~~~~~~i   81 (173)
T d1bg7a_           2 SQVRQNFHRDCEAAINRMVNMELYASYTYLSMAFYFDRDDIALHNVAKFFKEQSHEEREHAEKLMKDQNKRGGRIVLQDV   81 (173)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc--
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG--  242 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g--  242 (261)
                      .+|+..    +|.+++++|+.+|++|+.+++.|++|+++|.+.+|+.+++||+.+||+||++++++++++|++|+++|  
T Consensus        82 ~~~~~~----~~~s~~~~~~~al~~Ek~v~~~l~~l~~~a~~~~D~~~~~fLe~~fl~eQ~e~~~~l~~~l~~l~~~g~~  157 (173)
T d1bg7a_          82 QKPERD----EWGNTLEAMQAALQLEKTVNQALLDLHKVGSDKVDPHLCDFLETEYPEEQVKSIKQLGDYITNLKRLGLP  157 (173)
T ss_dssp             CCCSCS----CCCSHHHHHHHHHHHHHHHHHHHHHC--------------------CTTHHHHHHHHHHHHHHHHHTTTT
T ss_pred             CCCCCC----CCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            988752    34689999999999999999999999999999999999999995599999999999999999999998  


Q ss_pred             -CCchhhHHhHHhhcC
Q 024844          243 -KGHGLWHFDQMLLHE  257 (261)
Q Consensus       243 -~g~g~ylfD~~L~~~  257 (261)
                       +|+|+|+|||+|+++
T Consensus       158 ~~gl~~~l~D~~ll~~  173 (173)
T d1bg7a_         158 QNGMGEYLFDKHTMGE  173 (173)
T ss_dssp             TCHHHHHHHHHHTTTC
T ss_pred             cchhHHHHhhHHhcCC
Confidence             468899999998763

>d1r03a_ a.25.1.1 (A:) (Apo)ferritin {Human (Homo sapiens), mitocondial isoform [TaxId: 9606]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Human (Homo sapiens), mitocondial isoform [TaxId: 9606]

Probab=100.00  E-value=8.8e-49  Score=331.32  Aligned_cols=167  Identities=43%  Similarity=0.695  Sum_probs=159.6

Q ss_pred             chhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeccc
Q 024844           85 SLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSI  164 (261)
Q Consensus        85 s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I  164 (261)
                      |.+||||+++|+++||+|||.|++|||+|++||.||+++++++|||++||+.+|+|||+||++|++||++|||+|++++|
T Consensus         1 ~~~r~n~~~e~e~aLN~qi~~El~as~~Yl~ma~~f~~~~~~l~g~a~~f~~~a~EE~~Ha~~l~~yi~~rgg~~~~~~i   80 (171)
T d1r03a_           1 SRVRQNFHPDSEAAINRQINLELYASYVYLSMAYYFSRDDVALNNFSRYFLHQSREETEHAEKLMRLQNQRGGRIRLQDI   80 (171)
T ss_dssp             CTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCC
T ss_pred             CCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCc
Confidence            56899999999999999999999999999999999999899999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc--
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG--  242 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g--  242 (261)
                      ++|+.+    +|.+++++|+.+|++|+.+++.|++|+++|.+.+|+.|.+||++|||+||+++++++++++++|+++|  
T Consensus        81 ~~~~~~----~~~s~~~~~~~~l~~E~~vt~~i~~l~~~a~~~~D~~t~~fle~~fl~eQ~e~~~~l~~~l~~l~~ig~~  156 (171)
T d1r03a_          81 KKPEQD----DWESGLHAMECALLLEKNVNQSLLELHALASDKGDPHLCDFLETYYLNEQVKSIKELGDHVHNLVKMGAP  156 (171)
T ss_dssp             CCCSCS----CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cCCCCc----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            999763    34679999999999999999999999999999999999999998999999999999999999999998  


Q ss_pred             -CCchhhHHhHHhh
Q 024844          243 -KGHGLWHFDQMLL  255 (261)
Q Consensus       243 -~g~g~ylfD~~L~  255 (261)
                       .|+|+|+||++|+
T Consensus       157 ~~gl~~~l~D~~ll  170 (171)
T d1r03a_         157 DAGLAEYLFDTHTL  170 (171)
T ss_dssp             TSTTHHHHHHHHTC
T ss_pred             cchHHHHHHhHHhc
Confidence             3678899999986

>d1z6oa1 a.25.1.1 (A:13-212) (Apo)ferritin {Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), L chain [TaxId: 7111]

Probab=100.00  E-value=2e-48  Score=337.85  Aligned_cols=174  Identities=24%  Similarity=0.352  Sum_probs=162.6

Q ss_pred             cchhcccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc
Q 024844           84 LSLARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS  163 (261)
Q Consensus        84 ~s~aRq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~  163 (261)
                      ++..|++++++|+.+||+|||.||.+||+|++||+||++++++||||++||+.+|+|||+||++|++||++|||+|.++.
T Consensus        14 ~~~~~~~~~~~~e~~ln~~in~el~aSy~Ylama~~f~~~~~~l~GfakfF~~~S~EE~eHA~kl~~Yl~~RGg~v~~~~   93 (200)
T d1z6oa1          14 AVYGEYGSHGNVATELQAYAKLHLERSYDYLLSAAYFNNYQTNRAGFSKLFKKLSDEAWSKTIDIIKHVTKRGDKMNFDQ   93 (200)
T ss_dssp             SCCTTTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTC
T ss_pred             hhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecCc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHA-EKGDALYAMELALSLEKLTNEKLLSLHSVADRN----NDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       164 I~~P~~~f~~~-e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~----~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      |..|+.++++. .|.+++++|+.||++||.||+.|++||++|.++    +|+++++||+.|||+||+++++++++++++|
T Consensus        94 i~~p~~~~~~~~~~~~~l~~~~~AL~~Ek~Vt~~i~~L~~~A~~~~~~~~D~~~~~fLe~~fi~EQvee~~~l~~~i~~L  173 (200)
T d1z6oa1          94 HSTMKTERKNYTAENHELEALAKALDTQKELAERAFYIHREATRNSQHLHDPEIAQYLEEEFIEDHAEKIRTLAGHTSDL  173 (200)
T ss_dssp             CCCSCCCCCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998876543 478999999999999999999999999999876    6999999999779999999999999999999


Q ss_pred             Hhcc-C------CchhhHHhHHhhcC
Q 024844          239 RMVG-K------GHGLWHFDQMLLHE  257 (261)
Q Consensus       239 ~r~g-~------g~g~ylfD~~L~~~  257 (261)
                      +++| .      ++|+|+||++|.+.
T Consensus       174 ~rig~~~~~~~~~lg~ylfDk~L~k~  199 (200)
T d1z6oa1         174 KKFITANNGHDLSLALYVFDEYLQKT  199 (200)
T ss_dssp             HHHHHGGGGTTHHHHHHHHHHHHHHH
T ss_pred             HHhccccCCCcccchhhhhhHhhhhc
Confidence            9997 2      25999999999874

>d1z6om1 a.25.1.1 (M:1-191) (Apo)ferritin {Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: (Apo)ferritin
species: Cabbage looper(Trichoplusia ni), H chain [TaxId: 7111]

Probab=100.00  E-value=3.5e-46  Score=321.77  Aligned_cols=167  Identities=27%  Similarity=0.430  Sum_probs=150.0

Q ss_pred             cccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee----ecc
Q 024844           88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK----LHS  163 (261)
Q Consensus        88 Rq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~----l~~  163 (261)
                      -.+++++|+++||+|||.|+.|||+|++||+||++++++||||++||+.+|+|||+||++|++||++|||++.    +.+
T Consensus        14 ~~~~~~~~e~aLn~qIn~El~aSy~Yl~ma~~f~~~~~~l~Gfa~ff~~~s~EE~eHa~kl~~Yl~~RGg~v~~~~~~~~   93 (191)
T d1z6om1          14 WITMHRSCRNSMRQQIQMEVGASLQYLAMGAHFSKDVVNRPGFAQLFFDAASEEREHAMKLIEYLLMRGELTNDVSSLLQ   93 (191)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGCC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccC
Confidence            3468899999999999999999999999999999999999999999999999999999999999999999874    333


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---ChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNN---DPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~---D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      +.+|+.    .+|++++++|+.||++||.|++.|++||++|.+++   |+++.+||+++||+||+++++++++++++|++
T Consensus        94 ~~~~~~----~~~~s~l~a~~~AL~~Ek~vt~~i~~L~~~A~~~~d~~d~~~~~~le~~fl~eQve~~~~l~~~~~~L~~  169 (191)
T d1z6om1          94 VRPPTR----SSWKGGVEALEHALSMESDVTKSIRNVIKACEDDSEFNDYHLVDYLTGDFLEEQYKGQRDLAGKASTLKK  169 (191)
T ss_dssp             CCCCSC----CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCc----cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444432    34578999999999999999999999999998775   78888888878999999999999999999999


Q ss_pred             ccC---CchhhHHhHHhhcCC
Q 024844          241 VGK---GHGLWHFDQMLLHEG  258 (261)
Q Consensus       241 ~g~---g~g~ylfD~~L~~~~  258 (261)
                      +|+   |+|+|+||++|++..
T Consensus       170 ~~~~~~~Lg~ylfDk~Ll~~~  190 (191)
T d1z6om1         170 LMDRHEALGEFIFDKKLLGID  190 (191)
T ss_dssp             TTTTCHHHHHHHHHHHHTTCC
T ss_pred             hcCCcchhHHHHhhHHHcCCC
Confidence            993   568899999999753

>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.5e-46  Score=312.81  Aligned_cols=162  Identities=29%  Similarity=0.505  Sum_probs=155.4

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      +.++++|+++||+|||.|++|||+|++||+||+  ++|+||||+||+.+|+|||+||++|++|+++|||.|.+++|++|.
T Consensus         2 ~~~s~~v~~~LN~qi~~El~as~~Yl~ma~~~~--~~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~   79 (164)
T d1vlga_           2 MVISEKVRKALNDQLNREIYSSYLYLSMATYFD--AEGFKGFAHWMKKQAQEELTHAMKFYEYIYERGGRVELEAIEKPP   79 (164)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCC
Confidence            358999999999999999999999999999998  689999999999999999999999999999999999999999998


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchh
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGL  247 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~  247 (261)
                      .+|     .+++++|+.+|.+|+.+++.|++++++|.+++|++|++||+ |||+||+++++++++++++|+++| +|.|+
T Consensus        80 ~~~-----~~~~~~~~~al~~E~~v~~~~~~l~~~a~~~~D~~t~~fl~-~fl~eQ~e~~~~l~~~l~~l~~~g~~~~~~  153 (164)
T d1vlga_          80 SNW-----NGIKDAFEAALKHEEFVTQSIYNILELASEEKDHATVSFLK-WFVDEQVEEEDQVREILDLLEKANGQMSVI  153 (164)
T ss_dssp             CCC-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchH
Confidence            765     46899999999999999999999999999999999999999 999999999999999999999999 68999


Q ss_pred             hHHhHHhhcCC
Q 024844          248 WHFDQMLLHEG  258 (261)
Q Consensus       248 ylfD~~L~~~~  258 (261)
                      |+||++|+++.
T Consensus       154 ~~~D~~L~~~~  164 (164)
T d1vlga_         154 FQLDRYLGQRE  164 (164)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHhcCC
Confidence            99999999874

>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni [TaxId: 197]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Campylobacter jejuni [TaxId: 197]

Probab=100.00  E-value=1.5e-45  Score=309.70  Aligned_cols=159  Identities=25%  Similarity=0.387  Sum_probs=153.0

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+|||.|++|||+|++||+||++  .++|||++||+.+|+|||+||++|++||++|||.|.+++|++|..+
T Consensus         2 ~s~~v~~~LN~qi~~El~as~~Yl~~a~~~~~--~~l~g~a~~f~~~s~EE~~HA~~l~~yi~~rgg~~~~~~i~~p~~~   79 (165)
T d1krqa_           2 LSKEVVKLLNEQINKEMYAANLYLSMSSWCYE--NSLDGAGAFLFAHASEESDHAKKLITYLNETDSHVELQEVKQPEQN   79 (165)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCCCCCCCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCccCcccccccc
Confidence            68999999999999999999999999999994  5999999999999999999999999999999999999999999876


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     .+++++|+.+|++|+.+++.|++|+++|.+.+|++|++||+ |||+||+++++++++++++|+++| .|.|+|+
T Consensus        80 ~-----~~~~~~l~~al~~E~~v~~~~~~l~~~A~~~~D~~t~~fl~-~fl~eQ~e~~~~~~~~l~~l~~~g~~g~~l~~  153 (165)
T d1krqa_          80 F-----KSLLDVFEKTYEHEQFITKSINTLVEHMLTHKDYSTFNFLQ-WYVSEQHEEEALFRGIVDKIKLIGEHGNGLYL  153 (165)
T ss_dssp             C-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTH-HHHHHHHHHHHHHHHHHHHHHHHCSTTTHHHH
T ss_pred             C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCcchHHHH
Confidence            5     57899999999999999999999999999999999999999 999999999999999999999999 6899999


Q ss_pred             HhHHhhcC
Q 024844          250 FDQMLLHE  257 (261)
Q Consensus       250 fD~~L~~~  257 (261)
                      ||++|.+.
T Consensus       154 ~D~~l~~~  161 (165)
T d1krqa_         154 ADQYIKNI  161 (165)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>d1s3qa1 a.25.1.1 (A:3-164) Non-hem ferritin {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.5e-45  Score=306.83  Aligned_cols=160  Identities=30%  Similarity=0.498  Sum_probs=154.2

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+|||.|++|||+|++||.||+  +++||||++||+.+|+|||+||++|++|+++|||.|++++|++|..+
T Consensus         2 ~s~~~~~~Ln~qi~~El~as~~Yl~~a~~~~--~~~l~g~a~~f~~~s~eE~~Ha~~l~~yl~~rgg~~~~~~i~~p~~~   79 (162)
T d1s3qa1           2 ISEKMVEALNRQINAEIYSAYLYLSMASYFD--SIGLKGFSNWMRVQWQEELMHAMKMFDFVSERGGRVKLYAVEEPPSE   79 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCCCCcc
Confidence            6899999999999999999999999999997  78999999999999999999999999999999999999999999876


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     .+++++|+.+|.+|+.+++.|++++++|.+.+|++|.+||+ |||.||+++++++++++++|+++| +|.|+|+
T Consensus        80 ~-----~~~~~~l~~~l~~E~~v~~~l~~l~~~a~~~~D~~t~~fl~-~~l~eQ~e~~~~l~~~l~~l~~~g~~~~gl~~  153 (162)
T d1s3qa1          80 W-----DSPLAAFEHVYEHEVNVTKRIHELVEMAMQEKDFATYNFLQ-WYVAEQVEEEASALDIVEKLRLIGEDKRALLF  153 (162)
T ss_dssp             C-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCcchHHH
Confidence            5     57899999999999999999999999999999999999999 999999999999999999999999 6899999


Q ss_pred             HhHHhhcCC
Q 024844          250 FDQMLLHEG  258 (261)
Q Consensus       250 fD~~L~~~~  258 (261)
                      ||++|+++.
T Consensus       154 ~D~~l~~~~  162 (162)
T d1s3qa1         154 LDKELSLRQ  162 (162)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHhcCC
Confidence            999999874

>d1euma_ a.25.1.1 (A:) Non-hem ferritin {Escherichia coli, FtnA [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Non-hem ferritin
species: Escherichia coli, FtnA [TaxId: 562]

Probab=100.00  E-value=3.4e-45  Score=305.97  Aligned_cols=159  Identities=23%  Similarity=0.391  Sum_probs=152.8

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE  170 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~  170 (261)
                      ++++|+++||+|||.|++|||+|++||+||++  .++||||+||+.+|+|||+||++|++||++|||.|++++|++|..+
T Consensus         1 l~~~~~~~LN~qi~~El~as~~Yl~~a~~~~~--~~l~g~a~~f~~~a~EE~~HA~~l~~yl~~rgg~~~~~~i~~p~~~   78 (161)
T d1euma_           1 LKPEMIEKLNEQMNLELYSSLLYQQMSAWCSY--HTFEGAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAE   78 (161)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCcc
Confidence            58999999999999999999999999999995  5899999999999999999999999999999999999999999876


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc-CCchhhH
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG-KGHGLWH  249 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g-~g~g~yl  249 (261)
                      |     .+++++|+.+|++|+.+++.|++|+++|.+++|++|.+||+ |||+||+++++++++++++|+++| +|+|+|+
T Consensus        79 ~-----~~~~~~~~~al~~E~~v~~~~~~l~~~A~~~~D~~t~~fl~-~fl~eQ~e~~~~~~~~l~~l~~~g~~~~~~y~  152 (161)
T d1euma_          79 Y-----SSLDELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQ-WYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYF  152 (161)
T ss_dssp             C-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHH
Confidence            5     57899999999999999999999999999999999999999 999999999999999999999999 6899999


Q ss_pred             HhHHhhcC
Q 024844          250 FDQMLLHE  257 (261)
Q Consensus       250 fD~~L~~~  257 (261)
                      ||++|+++
T Consensus       153 ~D~~L~~~  160 (161)
T d1euma_         153 IDKELSTL  160 (161)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999875

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.97  E-value=9.2e-30  Score=208.55  Aligned_cols=144  Identities=17%  Similarity=0.181  Sum_probs=137.4

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCC
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPS  169 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~  169 (261)
                      +.+++++++||++|+.|+.|+++|+.+|.||+  +++++++++||+.+|.+|++||.+|++|++.|||.|.+.++++|..
T Consensus         2 ~~~~~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~--~~~~~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~~~~~~~~~   79 (154)
T d2fkza1           2 KGDKIVIQHLNKILGNELIAINQYFLHARMYE--DWGLEKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKLLI   79 (154)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccc
Confidence            56799999999999999999999999999999  7899999999999999999999999999999999999998876542


Q ss_pred             CCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          170 EFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       170 ~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                            +.++.++++.++.+|+.+++.+++++++|.+.+|+.|.+||+ ||+.+|++|++++.++|++++++|
T Consensus        80 ------~~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~-~il~eE~~h~~~l~~~L~~~~~~g  145 (154)
T d2fkza1          80 ------GEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLE-DILESEEDHIDWLETQLDLIDKIG  145 (154)
T ss_dssp             ------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhC
Confidence                  257899999999999999999999999999999999999999 999999999999999999999998

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.97  E-value=1.2e-29  Score=210.02  Aligned_cols=145  Identities=16%  Similarity=0.142  Sum_probs=137.8

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++.+++++++||+||+.|+.++++|+.++.||+  +++++|++.||+.+|.||++||.+|++|++.|||.|.+..+.+|.
T Consensus         1 m~~~~kvi~~LN~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~   78 (160)
T d1jgca_           1 MKGDAKVIEFLNAALRSELTAISQYWVHFRLQE--DWGLAKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPLR   78 (160)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccccccc
Confidence            356799999999999999999999999999998  789999999999999999999999999999999999998887664


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      +.++.++++.++++|+.+++.|++++++|.+.+|+.|.+||+ |||.||.+|+.++.++|+.++++|
T Consensus        79 ~------~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~-~~l~eee~h~~~l~~~l~~i~~~G  145 (160)
T d1jgca_          79 I------GEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFE-SLITDEEGHVDFLETQISLYDRLG  145 (160)
T ss_dssp             C------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3      257899999999999999999999999999999999999999 999999999999999999999998

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.2e-29  Score=204.82  Aligned_cols=145  Identities=19%  Similarity=0.181  Sum_probs=138.1

Q ss_pred             ccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC
Q 024844           89 QKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP  168 (261)
Q Consensus        89 q~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~  168 (261)
                      ++.+++++++||++|+.|++|+++|+.|+.||+  +++++++++||+.+|.||++||.+|++|++.+||.|.+.+++.|.
T Consensus         1 m~~~~~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~--~~~~~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~   78 (158)
T d2htna1           1 MKGDTKVINYLNKLLGNELVAINQYFLHARMFK--NWGLKRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLN   78 (158)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccc
Confidence            356899999999999999999999999999999  789999999999999999999999999999999999999988775


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .      +.++.++++.++..|+.++..+++++..|.+.+|+.|.+||+ +++.+|.+|+.+|.++|+++.++|
T Consensus        79 ~------~~~~~~~l~~~~~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~-~il~eee~h~~~l~~~L~~~~~~g  145 (158)
T d2htna1          79 I------GEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMI-EILRDEEGHIDWLETELDLIQKMG  145 (158)
T ss_dssp             C------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             C------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHC
Confidence            4      257899999999999999999999999999999999999999 999999999999999999999997

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=99.96  E-value=3.7e-28  Score=202.46  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=138.8

Q ss_pred             cccCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCC
Q 024844           88 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQP  167 (261)
Q Consensus        88 Rq~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P  167 (261)
                      |.+-.+++++.||++++.|+.++++|+.++.+|+  +++++|+++||+++|.||+.||++|++|++.+||.|.+..+..|
T Consensus         2 ~~~~~~~ii~~Ln~~l~~E~~a~~~Y~~~a~~~~--~~~~~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~   79 (169)
T d1nf4a_           2 REDRKAKVIEVLNKARAMELHAIHQYMNQHYSLD--DMDYGELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKV   79 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcccccccc
Confidence            4556789999999999999999999999999998  78999999999999999999999999999999999999998887


Q ss_pred             CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          168 PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       168 ~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      ...      .++.++++.++..|+.+++.|++++.+|.+.+|+.|.+||+ +||.+|.+|+.++.++++.++++|
T Consensus        80 ~~~------~~~~e~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~-~il~eE~~H~~~~e~~l~~i~~~G  147 (169)
T d1nf4a_          80 VTG------QAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFE-RIIEEEQAHLTYYENIGSHIKNLG  147 (169)
T ss_dssp             CCS------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            642      46889999999999999999999999999999999999999 999999999999999999999998

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical rubrerythrin
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=99.89  E-value=1.9e-22  Score=162.34  Aligned_cols=135  Identities=16%  Similarity=0.114  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      ++.++.||++++.|+.|+++|+.||.|++  +.|++++|++|+.+|.+|+.||+++++|++.+||.|.+.+.+.|     
T Consensus         5 t~t~~~L~~a~~~E~~A~~~Y~~~a~~a~--~~g~~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~~~~~~~-----   77 (141)
T d1j30a_           5 TKTAENLKQGFIGESMANRRYLYFAKRAD--EEGYPEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIG-----   77 (141)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTTSCBCS-----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcC-----
Confidence            56789999999999999999999999999  56999999999999999999999999999999999876543333     


Q ss_pred             ccccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          173 HAEKGDALYAMELALSLE-KLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lE-k~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                           +..+.++.++..| +.++..|.+++++|.+++|+.+.+||+ |++.+|.+|.+++.+++++|+.
T Consensus        78 -----~~~~~l~~~~~~e~~e~~~~y~~~~~~A~~e~d~~~~~~~~-~i~~~E~~H~~~f~~~l~~l~~  140 (141)
T d1j30a_          78 -----TLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFE-TLARAEKSHAEKFQNVLKQLKG  140 (141)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence                 2344555555554 679999999999999999999999999 9999999999999999999964

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.88  E-value=4.5e-22  Score=161.35  Aligned_cols=138  Identities=12%  Similarity=0.119  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      ++.++.||..+..|+.|+++|+.+|.+|+  ++|+++++++|+..|.+|+.||+++++|++.+||.|...  ..|...  
T Consensus         6 t~t~~~L~~a~~~E~~A~~~Y~~~A~~a~--~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~~--~~~~~~--   79 (146)
T d1lkoa1           6 SRTEKNILTAFAGESQARNRYNYFGGQAK--KDGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAA--FPAGII--   79 (146)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCC--CCCCCC--
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCC--CCcccc--
Confidence            56789999999999999999999999999  679999999999999999999999999999999998643  223222  


Q ss_pred             ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          173 HAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                         +.++..+++.++..|..+++.|.+++++|.+++|+.+.+||+ |++.+|.+|.+.+.+++.+|+.
T Consensus        80 ---~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~~~~D~~~~~~f~-~i~~~E~~H~~~f~~~l~~l~~  143 (146)
T d1lkoa1          80 ---ADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFA-SIAVAEEFHEKRFLDFARNIKE  143 (146)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence               357899999999999999999999999999999999999999 9999999999999999999964

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=99.87  E-value=1.1e-21  Score=157.05  Aligned_cols=129  Identities=10%  Similarity=0.015  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCc
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDH  173 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~  173 (261)
                      +.++.||++++.|+.|+++|++||.+++  ++|++++|++|+.+|.||+.||++|++|++++||.|.+..++.|...   
T Consensus         6 ~t~e~L~~a~~~E~~A~~~Yl~~A~~~~--~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~~~~~---   80 (135)
T d1yuza1           6 STLENLKAAIAGETGAHAKYTAFAKAAR--EQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAY---   80 (135)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh--HCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCcCC---
Confidence            3578899999999999999999999999  67999999999999999999999999999999999999988877642   


Q ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHH
Q 024844          174 AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKI  231 (261)
Q Consensus       174 ~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l  231 (261)
                         .+....++..+..|..+++.|.++++.|.+.+|+.+.++|+ +++.++..|.+.+
T Consensus        81 ---~~~~~L~~~~~~ee~e~~~~Y~~~~~~A~~~~d~~~~~~f~-~i~~~E~~H~e~F  134 (135)
T d1yuza1          81 ---SCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFT-RAKLAESVHAERY  134 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             ---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHh
Confidence               34567777777788899999999999999999999999999 7777666665543

>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.57  E-value=3.3e-14  Score=114.02  Aligned_cols=124  Identities=12%  Similarity=0.056  Sum_probs=112.4

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCC
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFD  172 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~  172 (261)
                      +..++.||+.+.-|+.|..+|+.+|..++  ++|+|.+|+.|+..|.+|+.||+.+++++...|                
T Consensus         5 ~~t~~~L~~A~~gE~~A~~~Y~~~A~~a~--~~G~~~lA~~f~~~A~eE~~HA~~~~~~i~~l~----------------   66 (133)
T d1nnqa1           5 TMTKKFLEEAFAGESMAHMRYLIFAEKAE--QEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLG----------------   66 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCC----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------
Confidence            45678999999999999999999999999  789999999999999999999999999985433                


Q ss_pred             ccccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          173 HAEKGDALYAMELALSLE-KLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       173 ~~e~~d~lea~e~AL~lE-k~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                           +..+.++.++..| ...++.|.+..++|.+++|+.+.++++ ..+.+...|.+++.+.+..|+.
T Consensus        67 -----~~~~~L~~~~~~e~~e~~~~Y~e~~~~a~~egd~~~a~~f~-~i~~~E~~Ha~~f~~~l~~le~  129 (133)
T d1nnqa1          67 -----KTPENLQMGIEGETFEVEEMYPVYNKAAEFQGEKEAVRTTH-YALEAEKIHAELYRKAKEKAEK  129 (133)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----hHHhhhHHHHHHhHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence                 2346677788888 578899999999999999999999999 9999999999999999999987

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=99.40  E-value=7.4e-12  Score=99.18  Aligned_cols=140  Identities=14%  Similarity=0.097  Sum_probs=116.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC-CC-----C
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM-QP-----P  168 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~-~P-----~  168 (261)
                      +.++||..|..|..+...|..++..+.  +.+.+.++++|...+.+|++|+..|.+.+..++|.+...... .+     .
T Consensus         3 ~~e~L~~Ai~~E~~a~~~Y~~~a~~~~--~~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
T d2oh3a1           3 LAEFLAHAIALETEAAERYVELADMME--AHNNLDTATVFRDMARFSTLHGDEIKQRSRALELPKLMSWQYRWKTPPEVG   80 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCGGGTSCCCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhhccccchhHH
Confidence            578999999999999999999999999  568999999999999999999999999999999876543211 10     0


Q ss_pred             CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          169 SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       169 ~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      .........+..++++.|+.+|+.....+..+   |....|+.+..+++ +++.++.+|+..+...+.++.+
T Consensus        81 ~~~~~~~~~~~~~~l~~Al~~E~~a~~~Y~~~---a~~~~d~~~r~~~~-~l~~~E~~H~~~l~~~l~~~~~  148 (152)
T d2oh3a1          81 DENDIHYLMTPYHALRYARDNEIRGMEYYKEA---AANSADPEVKRLGA-DFAAEEAEHVVALDKWIEKTPR  148 (152)
T ss_dssp             CC---CGGGSHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHhhcccCCHHHHHHHHHHHHHHHHHHHHHH---HHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC
Confidence            00001123578999999999999988888876   45668999999999 9999999999999999988754

>d1o9ra_ a.25.1.1 (A:) Dodecameric ferritin homolog {Agrobacterium tumefaciens, Dps [TaxId: 358]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Agrobacterium tumefaciens, Dps [TaxId: 358]

Probab=99.34  E-value=4.6e-11  Score=97.70  Aligned_cols=136  Identities=9%  Similarity=0.073  Sum_probs=116.4

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------ec
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LH  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~  162 (261)
                      -..++.+.||+.+..++.....|....-+..  +.++..+..+|.++++++++|+..+.+++...||.|.        +.
T Consensus        14 ~~~~~~~~Ln~~La~~~~l~~k~~~~HWnv~--G~~F~~lH~~~~~~~~~~~~~~D~iAERi~~LG~~p~~~~~~~~~~s   91 (162)
T d1o9ra_          14 AKSTVIGILNESLASVIDLALVTKQAHWNLK--GPQFIAVHELLDTFRTQLDNHGDTIAERVVQLGGTALGSLQAVSSTT   91 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcee--CCChHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHhc
Confidence            4467889999999999999888887777777  6789999999999999999999999999999999994        44


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      .|+.++.++     .++.++++..+..|..+...++++++.|.+.+|+.|.+++. .++++..+++=.|+.+
T Consensus        92 ~i~~~~~~~-----~~~~e~l~~~l~~~~~~~~~~~~~i~~a~~~~D~~T~dll~-~i~~~~Ek~~W~l~a~  157 (162)
T d1o9ra_          92 KLKAYPTDI-----YKIHDHLDALIERYGEVANMIRKAIDDSDEAGDPTTADIFT-AASRDLDKSLWFLEAH  157 (162)
T ss_dssp             CSCCCCSSC-----CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHT
T ss_pred             cCcCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            555555432     46789999999999999999999999999999999999999 8888776666555443

>d1jiga_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-2 [TaxId: 1392]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus anthracis, Dlp-2 [TaxId: 1392]

Probab=99.26  E-value=3.6e-10  Score=90.42  Aligned_cols=135  Identities=14%  Similarity=0.070  Sum_probs=116.4

Q ss_pred             cHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------c
Q 024844           92 EDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------S  163 (261)
Q Consensus        92 s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~  163 (261)
                      .+++.+.||..+...+.....|....-+..  +.++..+..+|.++.++.++|+..+.+++...||.|...        .
T Consensus         3 ~~~~~~~Ln~~lA~~~~l~~k~~~~HWnv~--G~~F~~lH~~~~e~~~~~~~~~D~iAERi~~lgg~p~~~~~~~~~~s~   80 (146)
T d1jiga_           3 KTNVVEVLNKQVANWNVLYVKLHNYHWYVT--GPHFFTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKEYLATSS   80 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCccCHHHHhhcCc
Confidence            357899999999999999999998877777  678999999999999999999999999999999998532        3


Q ss_pred             cCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          164 IMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       164 I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      ++.+...      .++.++++..+..+..+...+++++++|.+.+|+.|.++|. .++.+..+++=.|+.+|
T Consensus        81 i~e~~~~------~~~~~~l~~ll~~~~~~~~~~r~~i~~a~~~~D~~t~dll~-~~~~~~Ek~~W~L~s~L  145 (146)
T d1jiga_          81 VNEGTSK------ESAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLL-AIHTTLEQHVWMLSAFL  145 (146)
T ss_dssp             SCCCCSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             CccccCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHhHHHHHH-HHHHHHHHHHHHHHhhc
Confidence            4333221      36889999999999999999999999999999999999999 88888888777666543

>d1ji5a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus anthracis, Dlp-1 [TaxId: 1392]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus anthracis, Dlp-1 [TaxId: 1392]

Probab=99.24  E-value=2.8e-10  Score=90.77  Aligned_cols=133  Identities=16%  Similarity=0.118  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------ecccC
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSIM  165 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~~I~  165 (261)
                      ++.+.||+++.........|....-+..  +.++..+..+|.++.++.++|+..+.+++...||.|.        ...++
T Consensus         1 ~~~e~Ln~~lA~~~~l~~k~~~~HWnv~--G~~F~~~H~~~~e~y~~~~~~~D~lAERi~~Lgg~p~~~~~~~~~~s~i~   78 (142)
T d1ji5a_           1 QVIEVLNKQVADWSVLFTKLHNFHWYVK--GPQFFTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKEYLEISSIQ   78 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhcccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCHHHHHhhCcCc
Confidence            3678999999999999999988766666  7789999999999999999999999999999999994        44455


Q ss_pred             CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          166 QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       166 ~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .++..      .+..++++..++.+..+...++++++.|.+.+|+.|.+++. .++.+..+++=.|+.+|
T Consensus        79 e~~~~------~~~~~ml~~~~~~~~~~~~~~~~~~~~a~~~~D~~t~~ll~-~~~~~~ek~~W~l~s~L  141 (142)
T d1ji5a_          79 EAAYG------ETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLL-GIYTELEKHAWMLRAFL  141 (142)
T ss_dssp             CCCTT------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ccCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHccc
Confidence            44332      25789999999999999999999999999999999999999 89988888776666554

>d1tjoa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Archaeon Halobacterium salinarum [TaxId: 2242]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Archaeon Halobacterium salinarum [TaxId: 2242]

Probab=99.24  E-value=3.6e-10  Score=93.95  Aligned_cols=138  Identities=18%  Similarity=0.187  Sum_probs=119.3

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------c
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------H  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~  162 (261)
                      -.+++++.||..+..++.....|..+.-...  +.++..+..+|.++.++.++|+..+.+++...||.|..        .
T Consensus        25 ~~~~~i~~Ln~~LA~~~~l~~k~~~~HWnv~--G~~F~~lH~~fee~y~~~~~~~D~iAERI~~LGg~p~~~~~~~~~~s  102 (180)
T d1tjoa_          25 RAEQCVDALNADLANVYVLYHQLKKHHWNVE--GAEFRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEA  102 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhheeee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCcCHHHHHHHc
Confidence            4567899999999999999999998888777  67899999999999999999999999999999999853        3


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .++.++.+     ..++.++++..+..|..+...+++++++|.+.+|+.|.++|+ .++.+..+++=.|+.+|.
T Consensus       103 ~i~e~~~~-----~~~~~eml~~ll~~~~~~i~~~~~~i~~a~e~~D~~Tadll~-~il~~~Ek~~WmL~s~L~  170 (180)
T d1tjoa_         103 SVDVEDED-----VYDIRTSLANDMAIYGDIIEATREHTELAENLGDHATAHMLR-EGLIELEDDAHHIEHYLE  170 (180)
T ss_dssp             CSCCCCSS-----BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHTS
T ss_pred             CCCccccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHhC
Confidence            33333322     246889999999999999999999999999999999999999 899988888777766653

>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus suis [TaxId: 1307]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Streptococcus suis [TaxId: 1307]

Probab=99.21  E-value=6.6e-10  Score=89.43  Aligned_cols=135  Identities=10%  Similarity=0.048  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------ccC
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------SIM  165 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~I~  165 (261)
                      ++.+.||..+.........|..+.-+..  +.++.++.+||.++.+++++|+..+.+++...||.|...        .++
T Consensus         3 ~~~~~Ln~~la~~~~l~~~~~~~HWnv~--G~~F~~lH~~f~~~~~e~~~~~D~lAERi~~lGg~p~~~~~~~~~~s~i~   80 (151)
T d1umna_           3 DSKAVLNQAVADLSVAHSILHQVHWYMR--GRGFMIWHPKMDEYMEEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLK   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhccee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHccCc
Confidence            5778999999999999999998777777  789999999999999999999999999999999998543        233


Q ss_pred             CCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          166 QPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       166 ~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      ..+.+.    ..++.++++..++.++.+...+++++++|.+.+|+.|.+++. .++++..+++-.|+.+|
T Consensus        81 e~~~~~----~~~~~~ml~~~~~~~~~~~~~~~~~~~~a~~~~D~~t~dll~-~i~~~~Ek~~WmL~a~L  145 (151)
T d1umna_          81 EVLGDY----NVTIEEQLARVVEVFRYLAALFQKGFDVSDEEGDSVTNDIFN-VAKASIEKHIWMLQAEL  145 (151)
T ss_dssp             CCCCCT----TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             cccCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence            222211    136789999999999999999999999999999999999999 88888777776666554

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.19  E-value=1.2e-09  Score=86.36  Aligned_cols=138  Identities=12%  Similarity=0.067  Sum_probs=112.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC----
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE----  170 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~----  170 (261)
                      ++++|+..|..|..+...|..++..+..     |+++++|...+.+|.+|+..|.+++..+||.+...........    
T Consensus        12 l~e~l~~ai~~E~~a~~~Y~~~a~~~~~-----~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (158)
T d2fzfa1          12 LEELLGMAIKAEIGAREFYKSLAEKIKI-----EALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEHIGPELQP   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCC-----TTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCCBSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhhhhhhhhh
Confidence            5789999999999999999999998772     6799999999999999999999999999998754322211110    


Q ss_pred             -CCc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          171 -FDH-AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       171 -f~~-~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                       ... ....+..++++.++..|......+..+   |....|+.+.+++. .++.++.+|...+...++.|.+-
T Consensus        87 ~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~l---a~~~~d~~~~~l~~-~i~~~E~~H~~~l~~~~d~l~~~  155 (158)
T d2fzfa1          87 VARELEKVQDIIDLIRWAMKAEEIAAEFYLKL---EEMVKEEEKKRLMR-YLADMERGHYYTLRAEYELLLNW  155 (158)
T ss_dssp             CCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHH---HHTSCSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHhhccccCCHHHHHHHHHHHHHHHHHHHHHH---HHhcCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc
Confidence             000 012467899999999999998888866   45679999999999 99999999999999999888663

>d2fjca1 a.25.1.1 (A:27-177) Dodecameric ferritin homolog {Treponema pallidum, TpF1 [TaxId: 160]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Treponema pallidum, TpF1 [TaxId: 160]

Probab=99.15  E-value=2.6e-09  Score=85.76  Aligned_cols=135  Identities=10%  Similarity=0.044  Sum_probs=116.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeec--------cc
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLH--------SI  164 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~--------~I  164 (261)
                      ..+.+.||+.+...+.....|..+.-+..  +.++..+..+|.++.++.++|+..+.+++...||.|...        .|
T Consensus         7 ~~~~~~Ln~~lA~~~~l~~k~~~~HWnv~--G~~F~~lH~~f~~~y~~~~~~~D~iAERi~~Lgg~p~~t~~~~~~~s~i   84 (151)
T d2fjca1           7 AAICEQLRQHVADLGVLYIKLHNYHWHIY--GIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGI   84 (151)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhheeee--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHHHhCCC
Confidence            45788999999999999999998888887  779999999999999999999999999999999999653        34


Q ss_pred             CCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          165 MQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       165 ~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      +.++.+     ..++.++++..+..+..+...++++++.|.+.+|+.|.+++. .++++..+++=.|+.+|
T Consensus        85 ~e~~~~-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~~~D~~t~~ll~-~i~~~~Ek~~WmL~a~L  149 (151)
T d2fjca1          85 AEETEK-----EITIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIIT-DILRTLGKAIWMLGATL  149 (151)
T ss_dssp             CCCCCC-----SEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CccccC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHhHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            333322     246889999999999999999999999999999999999999 88888777776665544

>d1n1qa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Bacillus brevis, Dps [TaxId: 1393]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Bacillus brevis, Dps [TaxId: 1393]

Probab=99.11  E-value=6.5e-09  Score=83.23  Aligned_cols=136  Identities=15%  Similarity=0.093  Sum_probs=114.2

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------c
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------H  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~  162 (261)
                      ..+.+...||+.....+.....|..+.-...  +..+.++..+|.++.++.++|+..+.+++...||.|..        .
T Consensus         5 ~~~~~~~~Ln~~lA~~~~l~~~~~~~HWnv~--G~~F~~lH~~~ee~y~e~~~~~D~iAERi~~Lgg~p~~~~~~~~~~s   82 (149)
T d1n1qa_           5 IQQLVAVLLNRQVANWVVLYVKLHNFHWNVN--GPNFFTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAASLEEA   82 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhcee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHhhC
Confidence            3467778999999988888888887766666  67899999999999999999999999999999999954        2


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .++.+...      .++.++++..+..+..+...++++++.|.+.+|+.|.+++. ..+.+..++.=.|+.+|
T Consensus        83 ~i~e~~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~a~~~~D~~t~dll~-~i~~~~Ek~~W~L~a~L  148 (149)
T d1n1qa_          83 SIKEATGG------ESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLD-AIEAGLEKHVWMLEAFL  148 (149)
T ss_dssp             CSCCCCSC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             CCccccCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence            33333322      35789999999999999999999999999999999999999 88888777766666554

>d1ji4a_ a.25.1.1 (A:) Dodecameric ferritin homolog {Helicobacter pylori, Nap [TaxId: 210]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Helicobacter pylori, Nap [TaxId: 210]

Probab=99.05  E-value=6.9e-09  Score=82.75  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=109.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cccCC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HSIMQ  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~I~~  166 (261)
                      ..+.||..+.........|..+.-...  +.++..+..+|.++.++..+|+..+.+++...||.|.-        ..++.
T Consensus         3 ~~~~L~~~lA~~~~l~~~~~~~HWnv~--G~~F~~lH~~f~e~y~~~~~~~D~iAERi~~LG~~p~~~~~~~~~~s~i~~   80 (144)
T d1ji4a_           3 TFEILKHLQADAIVLFMKVHNFHWNVK--GTDFFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKE   80 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHhcCCcc
Confidence            467889888888887777777666666  67899999999999999999999999999999999853        23444


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKY  234 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~  234 (261)
                      |+.+     +.++.++++..++.++.+...++++++.|.+.+|+.|.+++. .++.+..++.=.|+.+
T Consensus        81 ~~~~-----~~~~~~ml~~l~~~~~~~~~~~~~~~~~a~~~~D~~t~~ll~-~~~~~~ek~~W~L~s~  142 (144)
T d1ji4a_          81 ETKT-----SFHSKDIFKEILEDYKYLEKEFKELSNTAEKEGDKVTVTYAD-DQLAKLQKSIWMLQAH  142 (144)
T ss_dssp             CCCC-----CEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred             cCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence            4332     246889999999999999999999999999999999999999 8887776666555544

>d1dpsa_ a.25.1.1 (A:) Dodecameric ferritin homolog {Escherichia coli, Dps [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Escherichia coli, Dps [TaxId: 562]

Probab=98.89  E-value=5.7e-08  Score=78.83  Aligned_cols=132  Identities=8%  Similarity=0.022  Sum_probs=104.7

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------c
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------H  162 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~  162 (261)
                      -.+.+.++||+.+..++.....|....-...  +.++..+..+|.++.+++++|+..+.+++...||.|..        .
T Consensus        17 ~~~~~~~~L~~~la~~~~L~~~~~~~HWnv~--G~~F~~lH~~fee~y~e~~~~~D~iAERI~~Lgg~p~~~~~~~~~~s   94 (159)
T d1dpsa_          17 EKKATVELLNRQVIQFIDLSLITKQAHWNMR--GANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT   94 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCB--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhccee--CCCHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhC
Confidence            3456788999999988888888887666666  67899999999999999999999999999999999943        2


Q ss_pred             ccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHH
Q 024844          163 SIMQPPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAK  233 (261)
Q Consensus       163 ~I~~P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~  233 (261)
                      .++.++..     ..+..++++..++.++.+...+++   +|.+.+|+.|.+++. .++.+..+++=.|+.
T Consensus        95 ~i~e~~~~-----~~~~~~~l~~l~~~~~~~i~~~r~---~a~~~~D~~T~dll~-~~l~~~Ek~~WmL~s  156 (159)
T d1dpsa_          95 PLKSYPLD-----IHNVQDHLKELADRYAIVANDVRK---AIGEAKDDDTADILT-AASRDLDKFLWFIEC  156 (159)
T ss_dssp             CSCCCCSS-----CCBHHHHHHHHHHHHHHHHHHHHH---HHHHCCSHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCCc-----cccHHHHHHHHHHHHHHHHHHHHH---HHHHcCCHhHHHHHH-HHHHHHHHHHHHHHh
Confidence            23322222     146789999999998888777665   456779999999999 889888777655554

>d2bk6a1 a.25.1.1 (A:7-156) Dodecameric ferritin homolog {Listeria innocua [TaxId: 1642]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Listeria innocua [TaxId: 1642]

Probab=98.89  E-value=7.1e-08  Score=76.98  Aligned_cols=134  Identities=13%  Similarity=0.081  Sum_probs=108.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc--------cCC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS--------IMQ  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~--------I~~  166 (261)
                      +.+.||..+..-......|..+.-...  +.++..+..+|.++.++.++|+..+.+++...||.|....        |+.
T Consensus         3 ~~e~L~~~lA~~~~l~~k~~~~HWnv~--G~~F~~lH~~~e~~y~~~~~~~D~iAERi~~Lg~~p~~~~~~~~~~s~i~e   80 (150)
T d2bk6a1           3 TKEFLNHQVANLNVFTVKIHQIGWYMR--GHNFFTLHEKMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEE   80 (150)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhee--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHccCcc
Confidence            467888888777777666765554444  7799999999999999999999999999999999986432        332


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      .+.+.    ..++.++++..+..+..+...+++.+++|.+.+|+.|.++|. .++.+..+.+=.|+.+|
T Consensus        81 ~~~~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~a~~~~D~~t~dll~-~i~~~~Ek~~W~L~a~L  144 (150)
T d2bk6a1          81 APYTK----PKTMDQLMEDLVGTLELLRDEYKQGIELTDKEGDDVTNDMLI-AFKASIDKHIWMFKAFL  144 (150)
T ss_dssp             CCCCS----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHT
T ss_pred             cCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHc
Confidence            22111    136789999999999999999999999999999999999999 88888777776666554

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=9.5e-08  Score=74.85  Aligned_cols=133  Identities=19%  Similarity=0.206  Sum_probs=106.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCC--------
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQ--------  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~--------  166 (261)
                      +.+.|+..|..|..+...|..++..++      +.+...|...+.+|+.|+..|.+.+..+|+.+.......        
T Consensus         7 ~~e~l~~Ai~~E~~~~~~Y~~~a~~~~------~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (149)
T d1vjxa_           7 VSDILTVAIRLEEEGERFYRELSEHFN------GEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAGYAFYEVFP   80 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCC------SHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCSBCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHhhhhhhh
Confidence            467899999999999999999887664      358899999999999999999999999998654322111        


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      +..........+..++++.|+..|+.....|..+.   ....|+.+..+++ +++.+.-+|++.+.++...
T Consensus        81 ~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~l~---~~~~d~~~r~~~~-~i~~eE~~H~~~l~~l~~~  147 (149)
T d1vjxa_          81 DTSEILRRKDLTLKEVLDIAISVEKDSIILYYELK---DGLVNSDAQKTVK-KIIDQEKEHLRKLLEMKRE  147 (149)
T ss_dssp             CCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHH---HHCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH---HHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Confidence            11111112235789999999999999999988665   5568999999999 9999999999999887653

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.72  E-value=7.2e-07  Score=70.38  Aligned_cols=128  Identities=15%  Similarity=0.169  Sum_probs=104.8

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCCCCccc
Q 024844           96 EAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSEFDHAE  175 (261)
Q Consensus        96 e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~f~~~e  175 (261)
                      .++||..|..|+.+.|.|-..+.+++      ++....|....++|+.|++.|.+.+..+||.+.......   .+. .+
T Consensus         7 ~~~L~~AL~~E~aaiy~Y~~a~~~~~------~~~~~~~~~~~~~e~~H~~~L~~~i~~lgg~p~~~~~~~---~~~-~~   76 (142)
T d2ib0a1           7 NAALCDALAVEHATIYGYGIVSALSP------PGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAGY---QLP-MQ   76 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC------GGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSC---CCS-SC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---ccC-CC
Confidence            47899999999999999987777665      357888999999999999999999999999976542221   111 01


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHH
Q 024844          176 KGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQ  237 (261)
Q Consensus       176 ~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~  237 (261)
                      ..|...+++.++..|+.....++.+...   ..|+.++.+.. ..+.+...|...++..+..
T Consensus        77 ~td~~~~l~~a~~~E~~a~~~Y~~~~~~---~~d~~~r~la~-~il~~ea~ha~~~r~~~~~  134 (142)
T d2ib0a1          77 VSSAADAARLAVRMENDGATAWRAVVEH---AETADDRVFAS-TALTESAVMATRWNRVLGA  134 (142)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHH---CCSHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence            2478999999999999999999987654   58999999999 8999999998888877643

>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog {Mycobacterium smegmatis [TaxId: 1772]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Mycobacterium smegmatis [TaxId: 1772]

Probab=98.70  E-value=8.5e-07  Score=69.89  Aligned_cols=132  Identities=10%  Similarity=-0.036  Sum_probs=105.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeee--------cccCC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKL--------HSIMQ  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l--------~~I~~  166 (261)
                      +.+.||+.+.........+....-...  +..+.++..+|.++.++.++|+..+.+++...||.|.-        ..++.
T Consensus         1 v~~~L~~~La~~~~L~~~~~~~HWnv~--G~~F~~~H~~fee~y~~~~~~~D~iAERi~~Lg~~p~~~~~~~~~~s~~~~   78 (141)
T d2yw6a1           1 VADLLQKQLSTYNDLHLTLKHVHWNVV--GPNFIGVHEMIDPQVELVRGYADEVAERIATLGKSPKGTPGAIIKDRTWDD   78 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHEE--STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcccccc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHHHcCCCc
Confidence            356788888887777666665544444  67899999999999999999999999999999999843        33333


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      ++.++     .++..+++..+..+..+...++++++.|.+ +|+.|.+|+. .++++..+.+=.|+.+|
T Consensus        79 ~~~~~-----~~~~~~l~~l~~~~~~~~~~~r~~~~~a~~-~D~~T~dll~-~~~~~~ek~~WmL~a~L  140 (141)
T d2yw6a1          79 YSVER-----DTVQAHLAALDLVYNGVIEDTRKSIEKLED-LDLVSQDLLI-AHAGELEKFQWFVRAHL  140 (141)
T ss_dssp             CCCCS-----EEHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             cCCCC-----cCHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHH-HHHHHHHHHHHHHHhhc
Confidence            33322     367899999999999999999999999975 7999999999 88877777766665543

>d1zs3a1 a.25.1.1 (A:3-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsB [TaxId: 1358]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Lactococcus lactis, DpsB [TaxId: 1358]

Probab=98.41  E-value=1e-05  Score=66.70  Aligned_cols=133  Identities=12%  Similarity=0.074  Sum_probs=102.6

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------ecccCC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSIMQ  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~~I~~  166 (261)
                      ..+.||..+..-+.....+. -+.|.=+   | |.+..||.++.++.+++...+.+++...||.|.        +..|+.
T Consensus        25 a~amLn~lLAn~~vl~~K~~-~~HWnv~---G-~~lH~~fee~y~~~~~~~D~iAEri~~lG~~p~~t~~e~~e~s~i~e   99 (171)
T d1zs3a1          25 AGAMLGHVLSNLFIENIRLT-QAGIYAK---S-PVKCEYLREIAQREVEYFFKISDLLLDENEIVPSTTEEFLKYHKFIT   99 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHCS---S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-cCceeeE---C-hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCccHHHHHHHccCcc
Confidence            45678877765555444444 4444442   4 479999999999999999999999999999984        233332


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVS  236 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~  236 (261)
                      .+..++   .-++.++++..+..-+.+...++..+++|.+++|+.|.++|. .++.+..+.+-.|+.+|.
T Consensus       100 ~~~~~~---~~s~~eml~~Lv~d~~~~~~~~~~~i~~A~~e~D~~tadll~-d~~~~~eK~iWmL~a~Lg  165 (171)
T d1zs3a1         100 EDPKAK---YWTDEDLLESFIVDFQAQNMFITRAIKLANKEEKFALAAGVV-ELYGYNLQVIRNLAGDLG  165 (171)
T ss_dssp             CCGGGG---GSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHTT
T ss_pred             CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHC
Confidence            221111   136789999999999999999999999999999999999999 999998888887776653

>d1zuja1 a.25.1.1 (A:6-173) Dodecameric ferritin homolog {Lactococcus lactis, DpsA [TaxId: 1358]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Dodecameric ferritin homolog
species: Lactococcus lactis, DpsA [TaxId: 1358]

Probab=98.37  E-value=1.7e-05  Score=65.05  Aligned_cols=132  Identities=11%  Similarity=0.005  Sum_probs=102.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee--------ecccCC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVK--------LHSIMQ  166 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~--------l~~I~~  166 (261)
                      .-+.||..+..-+.....+..+.-+-.    | |+|..+|.++.++..++...+.+++...||.|.        ...|+.
T Consensus        22 agamln~vLAn~~vl~~K~~~~HWnV~----G-~~FH~~fee~y~~~~~~~D~iAEri~~lG~~~~~t~~e~~~~s~i~E   96 (168)
T d1zuja1          22 AGAMLSHVLSNIFYEKISLMQAGLYAK----S-ANYRIKFREIALKEDEWFYLISEQLLDENELVPTTLDEFVSNHKFIE   96 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCS----S-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcceeeee----C-cHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHccCcc
Confidence            456788877666555555554443333    3 578999999999999999999999999999874        223332


Q ss_pred             CCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHH
Q 024844          167 PPSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYV  235 (261)
Q Consensus       167 P~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l  235 (261)
                      -....   ..-++.++++..+...+.+...+++.+++|.+++|+.|.++|. .++.+..+.+-.|+.+|
T Consensus        97 ~~~~~---~~~s~~~ml~~li~d~~~~~~~~~~~i~~A~~~~D~~t~~~l~-~~l~~~ek~iWmL~a~L  161 (168)
T d1zuja1          97 NDPKA---KYWTDEALIENFINDFQNQNLFIGRAIKLAQKEEKFSLELAIR-KLYGYNLSIIPYFAGEL  161 (168)
T ss_dssp             CCTTG---GGSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             ccccc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence            11110   1136789999999999999999999999999999999999999 89999888888877665

>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.92  E-value=0.019  Score=49.64  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=107.0

Q ss_pred             cHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecc-----
Q 024844           92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHS-----  163 (261)
Q Consensus        92 s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~-----  163 (261)
                      ++...++|.+|+   +-|+.++.+|+..+.-|.    +-+.+..-+..-+.||+.|.+.+-.-+.+..+.+....     
T Consensus        18 dP~~A~~L~e~~GG~~GElsa~~qYl~Q~~~~~----~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~   93 (266)
T d1jkva_          18 DPIMARRLQESLGGQWGETTGMMSYLSQGWAST----GAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKR   93 (266)
T ss_dssp             CHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHCC----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHH
T ss_pred             CHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCC----CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhccc
Confidence            455566677776   459999999999997665    23458899999999999999999888877643322110     


Q ss_pred             ----------------cC-----CCC----CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHH
Q 024844          164 ----------------IM-----QPP----SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEF  215 (261)
Q Consensus       164 ----------------I~-----~P~----~~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~F  215 (261)
                                      +.     .|.    .-|+.   ...+++...|...+..|......+..|++.   ..|+...+.
T Consensus        94 ~~~~~~~~~G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~---tdDp~vk~~  170 (266)
T d1jkva_          94 DPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSM---TEDEGVRDM  170 (266)
T ss_dssp             CTTHHHHHHHSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred             chhHHHHhcCCCcceeeeccCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCChhHHHH
Confidence                            00     010    01211   124789999999999999999998888764   599999999


Q ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          216 VESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       216 Le~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      |. ..+.+.+-|...+...|..|+-
T Consensus       171 L~-fL~~rE~~H~~~f~~aLe~l~~  194 (266)
T d1jkva_         171 LK-FLLARETQHQLQFMKAQEELEE  194 (266)
T ss_dssp             HH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHhcc
Confidence            99 8999999999999999999864

>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.1  Score=45.60  Aligned_cols=146  Identities=16%  Similarity=0.124  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHh---HHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeec-----
Q 024844           92 EDECEAAINEQI---NVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL-RGGKVKLH-----  162 (261)
Q Consensus        92 s~~~e~aLNeQI---n~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~-RGG~v~l~-----  162 (261)
                      ++...++|.+|+   .-|+.+..+|+.-+.-|... ..++-+..-+..-+.||+.|-+.+-.-++. .+|.+.-.     
T Consensus        19 dP~~A~~l~e~~GG~~GEmsa~mqYl~Q~~~~~~~-~~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~p~~~~~~~~   97 (299)
T d2cwla1          19 DPNAAAAVQALLGGRFGEMSTLMNYMYQSFNFRGK-KALKPYYDLIANIATEELGHIELVAATINSLLAKNPGKDLEEGV   97 (299)
T ss_dssp             CHHHHHHHGGGTTSTTSHHHHHHHHHHHHHHCSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSTTCSCCCCC
T ss_pred             CHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHhhcc
Confidence            455666777776   47999999999999988743 356679999999999999999999888876 45443210     


Q ss_pred             -ccCCCC--------------------------CCCCc---cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhH
Q 024844          163 -SIMQPP--------------------------SEFDH---AEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQM  212 (261)
Q Consensus       163 -~I~~P~--------------------------~~f~~---~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t  212 (261)
                       +-.+|.                          .-|+.   ...+++..-|...+..|......+..|++.   ..|+..
T Consensus        98 dp~~~~~~~~~~~~n~~h~i~~g~g~~~~ds~G~pWt~~Yv~~sGnl~aDL~~Ni~aE~~Ar~~y~rl~~~---tdDp~v  174 (299)
T d2cwla1          98 DPESAPLGFAKDVRNAAHFIAGGANSLVMGAMGEHWNGEYVFTSGNLILDLLHNFFLEVAARTHKLRVYEM---TDNPVA  174 (299)
T ss_dssp             CGGGCTTGGGGSSSCSHHHHTSSSSCCSBCTTSCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTT---CCCHHH
T ss_pred             CchhhHHHhhhccCChhhhhccCCCCCccCCCCCcCCccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence             000000                          00211   123789999999999999999888888876   499999


Q ss_pred             HHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          213 AEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       213 ~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .+.|. ..+...+-|...+..-|..|+-.+
T Consensus       175 kd~L~-fLi~RE~~H~~~f~~ALe~l~g~~  203 (299)
T d2cwla1         175 REMIG-YLLVRGGVHAAAYGKALESLTGVE  203 (299)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHhCcC
Confidence            99999 888889999999999999997543

>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: half-ferritin
domain: Hypothetical protein NE0167
species: Nitrosomonas europaea [TaxId: 915]

Probab=95.25  E-value=0.084  Score=38.40  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=47.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 024844           95 CEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRG  156 (261)
Q Consensus        95 ~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RG  156 (261)
                      +.-++.. +-.|+.|.+.|..++..++     -+.+-+.|...++||.+|+-.+++++..+.
T Consensus        17 ~~Rai~s-li~EleAI~~Y~q~a~~t~-----d~~~k~Vl~hia~EEkeH~g~~LelLrr~D   72 (91)
T d1zpya1          17 MHRAIIS-LREELEAVDLYNQRVNACK-----DKELKAILAHNRDEEKEHAAMLLEWIRRCD   72 (91)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            3445664 4489999999999999998     357889999999999999999999998876

>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Possible acyl-[acyl-carrier protein] desaturase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.88  E-value=0.59  Score=39.88  Aligned_cols=142  Identities=14%  Similarity=0.092  Sum_probs=92.1

Q ss_pred             cCcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCC-
Q 024844           90 KYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPP-  168 (261)
Q Consensus        90 ~~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~-  168 (261)
                      .+++....+|---+=.|=+...--..++.+|..|    +.+++|.+...-||-.|+.-|-+|+ ...|+|....+..-. 
T Consensus        53 ~l~~~~~~alv~~lltEdnLP~Y~~~l~~~f~~d----~~w~~wv~~WtaEEnrHg~aL~~YL-~lsg~vDp~~~e~~~~  127 (267)
T d1za0a1          53 TLPRTITDACEILLILKDNLAGHHRELVEHFILE----DWWGRWLGRWTAEEHLHAIALREYL-VVTREVDPVANEDVRV  127 (267)
T ss_dssp             CSCHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCSCTTTTTCTTC
T ss_pred             cCchhHHHHHHhhhhcccCCcHHHHHHHHHhccc----hHHHHHHhcccHHHhhHHHHHHHHH-HHhccCChhHhHHHHH
Confidence            3666665554443334444433334455666654    3899999999999999999999998 445567655554321 


Q ss_pred             ----CCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhc
Q 024844          169 ----SEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMV  241 (261)
Q Consensus       169 ----~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~  241 (261)
                          ..|+. +..++...|-..--.|+.+.-.+.++.   ...+||.+...+. ..-.++..|.+...+++..+-..
T Consensus       128 ~~~~~G~~~-~~~~p~~~l~y~~fqE~aT~i~h~nla---~~~~dPvL~~i~~-rIA~DE~rH~~fy~~~v~~~le~  199 (267)
T d1za0a1         128 QHVMKGYRA-EKYTQVETLVYMAFYERCGAVFCRNLA---AQIEEPILAGLID-RIARDEVRHEEFFANLVTHCLDY  199 (267)
T ss_dssp             -----------CCCHHHHHHHHHHHHHHHHHHHHHHH---HHCCSHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCC-CCCchHHHHHHHHHHHhHHHHHHHHHH---HHcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence                13432 235788888888888988888887764   4679999999988 89999999999999998876544

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=94.67  E-value=0.056  Score=40.58  Aligned_cols=60  Identities=15%  Similarity=0.156  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      +..+++..|+.+|+.....|..+...+...+++.+..++. ++-.+..+|.+.+...+..+
T Consensus         2 t~~e~L~~Ai~~E~~a~~~Y~~~a~~~~~~~~~~~~~~f~-~la~eE~~H~~~l~~~~~~~   61 (152)
T d2oh3a1           2 TLAEFLAHAIALETEAAERYVELADMMEAHNNLDTATVFR-DMARFSTLHGDEIKQRSRAL   61 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999999999999999 99999999999998776665

>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: delta 9-stearoyl-acyl carrier protein desaturase
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=93.58  E-value=0.34  Score=42.86  Aligned_cols=147  Identities=17%  Similarity=0.205  Sum_probs=99.3

Q ss_pred             CcHHHHH-HHHHHhHHHHHHHHHHHHHHhhcc-c-C--CccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccC
Q 024844           91 YEDECEA-AINEQINVEYNVSYVYHALYAYFD-R-D--NIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIM  165 (261)
Q Consensus        91 ~s~~~e~-aLNeQIn~El~ASy~YlsmAa~Fd-r-d--~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~  165 (261)
                      +++.... ++-..|..|---+  |+.+-..++ - |  .-.-.+.++|.+...-||-.|+.-|-+|+..-| .|....+.
T Consensus        72 lpd~~~v~lv~nllTEd~LPt--Y~~~l~~~~g~~d~~g~~~~~W~~Wv~~WTAEEnRHg~aLr~YL~vsr-~VDp~~lE  148 (345)
T d1afra_          72 IPDDYFVVLVGDMITEEALPT--YQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSG-RVDMRQIE  148 (345)
T ss_dssp             SCHHHHHHHHHHHHHHHTHHH--HHHHHTTSTTTCCSSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHH
T ss_pred             CCHHHHHHHHHhhhccccCch--HHHHHHHHhccccccCCCCcchhhhccccccccchHHHHHHHHHHHhC-CCChHHHH
Confidence            5555543 3344455544444  444444333 1 1  112346999999999999999999999996544 45433332


Q ss_pred             CC-----CCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHh
Q 024844          166 QP-----PSEFDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRM  240 (261)
Q Consensus       166 ~P-----~~~f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r  240 (261)
                      .-     ...|+.....++...|-..--.|+.+.-...++.++|.+.+|+.+...+. ..-.++..|.....+++..+=.
T Consensus       149 ~~~~~~~~~G~~~~~~~~p~~~~vY~sfQE~AT~vsh~nt~~~a~e~gDPvL~~I~~-rIA~DE~rH~~fY~~~v~~~Le  227 (345)
T d1afra_         149 KTIQYLIGSGMDPRTENSPYLGFIYTSFQERATFISHGNTARQAKEHGDIKLAQICG-TIAADEKRHETAYTKIVEKLFE  227 (345)
T ss_dssp             HHHHHHHHHCCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence            10     01122111146777777777789888889999999999999999999999 8889999999999888886644


Q ss_pred             c
Q 024844          241 V  241 (261)
Q Consensus       241 ~  241 (261)
                      +
T Consensus       228 ~  228 (345)
T d1afra_         228 I  228 (345)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d2itba1 a.25.1.7 (A:3-201) Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188 {Pseudomonas putida [TaxId: 303]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: MiaE-like
domain: Putative tRNA-(Ms(2)io(6)a)-hydroxylase PP2188
species: Pseudomonas putida [TaxId: 303]

Probab=91.28  E-value=3.1  Score=33.76  Aligned_cols=138  Identities=13%  Similarity=0.180  Sum_probs=87.7

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecccCCCCCC---
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNLRGGKVKLHSIMQPPSE---  170 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~RGG~v~l~~I~~P~~~---  170 (261)
                      .....|.++.+.|-.|+.+=++|-+.|-    ..+.+..-+-..+.||+.|=+++++-+.+||..  +.++.+++--   
T Consensus        24 ~~~~~L~DHA~cEkKAA~~Alsli~rYp----~~~~Lv~~m~~La~EEL~HF~qV~~im~~Rgi~--l~~~~~~~Ya~~L   97 (199)
T d2itba1          24 DQETLLIDHKNCEFKAASTALSLIAKYN----THLDLINMMSRLAREELVHHEQVLRLMKRRGVP--LRPVSAGRYASGL   97 (199)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCCCSHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCCCCccHHHHHH
Confidence            3668999999999999999888866665    377899999999999999999999999999954  4555444310   


Q ss_pred             CCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHHhcc
Q 024844          171 FDHAEKGDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLRMVG  242 (261)
Q Consensus       171 f~~~e~~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~r~g  242 (261)
                      .+...++.+...+..-|--=.-=..+-....-+|..- |..+..|-. .++.-+..|-..   ++.-.+..+
T Consensus        98 ~~~~r~~~~~~llD~Llv~AlIEARScERF~lLa~~l-d~eL~~FY~-~L~~SEarH~~~---yl~LA~~~~  164 (199)
T d2itba1          98 RRLVRAHEPVKLVDTLVVGAFIEARSCERFAALVPHL-DEELGRFYH-GLLKSEARHYQG---YLKLAHNYG  164 (199)
T ss_dssp             HTTSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHGGGS-CHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHS
T ss_pred             HHHccCCChHHHHHHHHHHHHHhhhHHhHHHHHHhhC-CHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHC
Confidence            0001112222222221111100111222233445555 889999999 888777777554   444444443

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=90.59  E-value=0.47  Score=35.62  Aligned_cols=62  Identities=13%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CcHHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           91 YEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQNL  154 (261)
Q Consensus        91 ~s~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n~  154 (261)
                      ........+...+..|..+.-.|-.++..+.  ..+-+..+.||.....+|.+|+..|-+++..
T Consensus        79 ~~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~--~~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~  140 (146)
T d1lkoa1          79 IADTHANLIASAAGEHHEYTEMYPSFARIAR--EEGYEEIARVFASIAVAEEFHEKRFLDFARN  140 (146)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHH--HHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456678888888889999999999999998  4689999999999999999999999887754

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=89.75  E-value=1.3  Score=32.59  Aligned_cols=62  Identities=18%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ++-++-+..++..|-.....|.....+|...+.+.+.+++. ..-.+..+|-..+.+++..+.
T Consensus         5 ~~t~e~L~~a~~~E~~A~~~Yl~~A~~~~~~g~~~ia~~f~-~~A~eE~~HA~~l~~~l~~lg   66 (135)
T d1yuza1           5 GSTLENLKAAIAGETGAHAKYTAFAKAAREQGYEQIARLFE-ATAAAELIHIGLEYALVAEME   66 (135)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHCCChHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            34688899999999999999999999999999999999999 888888999999988888764

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.27  E-value=0.51  Score=34.95  Aligned_cols=59  Identities=17%  Similarity=0.003  Sum_probs=51.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          177 GDALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       177 ~d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      -++.+++..++.+|+.....+..+...   .+|+.+.+++. ++.++..+|.+.+.+++..+-
T Consensus        10 ~~l~e~l~~ai~~E~~a~~~Y~~~a~~---~~~~~~~~~f~-~la~eE~~H~~~~~~~~~~~~   68 (158)
T d2fzfa1          10 FSLEELLGMAIKAEIGAREFYKSLAEK---IKIEALKEKIN-WLAEEEKKHEALLRKLYSQMF   68 (158)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHS---CCCTTHHHHHH-HHHHHTHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHH---CCChhHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence            367899999999999999999877654   57899999999 999999999999999987663

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=1.6  Score=31.95  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           94 ECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN  153 (261)
Q Consensus        94 ~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n  153 (261)
                      ....+|.-.|..|..+.-.|..++..+.     =|.....|...+.+|+.|...|.++.-
T Consensus        92 ~~~~~l~~ai~~E~~a~~~Y~~l~~~~~-----d~~~r~~~~~i~~eE~~H~~~l~~l~~  146 (149)
T d1vjxa_          92 TLKEVLDIAISVEKDSIILYYELKDGLV-----NSDAQKTVKKIIDQEKEHLRKLLEMKR  146 (149)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4578899999999999999999998776     457999999999999999999988764

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=85.18  E-value=2.4  Score=31.70  Aligned_cols=61  Identities=5%  Similarity=-0.010  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      ..++++..++..|-.....|...+.++...+-..+..|++ .--.+..+|.+++.+.+..+-
T Consensus         6 ~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~~~~~~~la~~f~-~~a~eE~~Ha~~l~eri~~lG   66 (158)
T d2htna1           6 KVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVEY-HESIDEMKHADRYIERILFLE   66 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence            3789999999999999999999999999999999999998 566677788888888887664

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=84.61  E-value=2.6  Score=31.81  Aligned_cols=61  Identities=16%  Similarity=0.058  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQLR  239 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L~  239 (261)
                      .+++++..+|.+|-.....|...+..+...+-+.+..|+. .--.|+.+|..++.+++..+-
T Consensus         6 kvi~~LN~~l~~E~~a~~~Y~~~a~~~~~~~~~~l~~~f~-~~a~eE~~Ha~~l~eri~~lG   66 (160)
T d1jgca_           6 KVIEFLNAALRSELTAISQYWVHFRLQEDWGLAKMAKKSR-EESIEEMGHADKIIARILFLE   66 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999999889999999999 556667888888888876653

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.31  E-value=3.3  Score=30.74  Aligned_cols=60  Identities=8%  Similarity=0.016  Sum_probs=53.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhHHHHhHHhhHHHHHHHHHHHHHHHHHH
Q 024844          178 DALYAMELALSLEKLTNEKLLSLHSVADRNNDPQMAEFVESEFLGEQVEAINKIAKYVSQL  238 (261)
Q Consensus       178 d~lea~e~AL~lEk~vt~~l~~L~~lA~~~~D~~t~~FLe~~FL~EQve~ik~l~~~l~~L  238 (261)
                      .+++.+..++..|-.....|...+.++...+...+.+|+. .--.+..+|..++.+.+..+
T Consensus         6 ~ii~~Ln~~l~~E~~A~~~Y~~~a~~~~~~~~~~la~~f~-~~a~eE~~Ha~~l~~~i~~l   65 (154)
T d2fkza1           6 IVIQHLNKILGNELIAINQYFLHARMYEDWGLEKLGKHEY-HESIDEMKHADKLIKRILFL   65 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999999 67777789999888888765

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=81.01  E-value=4  Score=30.94  Aligned_cols=59  Identities=14%  Similarity=0.134  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHhhcccCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024844           93 DECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAKFFKESSEEEREHAEKFMEYQN  153 (261)
Q Consensus        93 ~~~e~aLNeQIn~El~ASy~YlsmAa~Fdrd~v~L~GfAkfF~~~S~EEreHAekLi~Y~n  153 (261)
                      ....+.|...+..|..+.-.|..+...++  ..+=++...||.....+|.+|...|-+.+.
T Consensus        83 ~~~~e~l~~~l~~E~~~~~~y~~~~~~A~--~~~D~~t~~~l~~il~eE~~H~~~~e~~l~  141 (169)
T d1nf4a_          83 QAVPVIYESDADQEDATIEAYSQFLKVCK--EQGDIVTARLFERIIEEEQAHLTYYENIGS  141 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44557788889999999999999999998  457889999999999999999977666444