Citrus Sinensis ID: 024914
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | 2.2.26 [Sep-21-2011] | |||||||
| Q8TP15 | 294 | Protease HtpX homolog 2 O | yes | no | 0.407 | 0.360 | 0.364 | 9e-11 | |
| Q8PSE5 | 294 | Protease HtpX homolog 2 O | yes | no | 0.407 | 0.360 | 0.364 | 3e-10 | |
| Q2RKK7 | 299 | Protease HtpX homolog OS= | yes | no | 0.380 | 0.331 | 0.37 | 8e-09 | |
| Q3SW84 | 307 | Protease HtpX homolog OS= | yes | no | 0.292 | 0.247 | 0.381 | 3e-08 | |
| B5YKM8 | 282 | Protease HtpX homolog OS= | yes | no | 0.292 | 0.269 | 0.368 | 6e-08 | |
| Q8THH5 | 286 | Protease HtpX homolog 1 O | no | no | 0.35 | 0.318 | 0.336 | 1e-07 | |
| A1AZW2 | 292 | Protease HtpX homolog OS= | yes | no | 0.296 | 0.263 | 0.363 | 1e-07 | |
| B3QED3 | 324 | Protease HtpX homolog OS= | yes | no | 0.376 | 0.302 | 0.342 | 2e-07 | |
| A3CLJ7 | 298 | Protease HtpX homolog OS= | yes | no | 0.292 | 0.255 | 0.276 | 3e-07 | |
| Q1QRL0 | 307 | Protease HtpX homolog OS= | yes | no | 0.292 | 0.247 | 0.368 | 3e-07 |
| >sp|Q8TP15|HTPX2_METAC Protease HtpX homolog 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX2 PE=3 SV=1 | Back alignment and function desciption |
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Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 62/107 (57%), Gaps = 1/107 (0%)
Query: 106 MLLENIGTSVLVSKNQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFV 165
M+L G + VS+++ P+LH ++T I ++ P + + Q+ VPNA+ S K V
Sbjct: 61 MVLWTTGAHI-VSESEAPQLHDMVTRLCVIADIPKPQIAIVQTRVPNAFATGRSPNKAVV 119
Query: 166 VVHTSLVELLTRKELQAVLAHELGHLKCDHGVWLTFANILTLGAYTI 212
V T +++ LT EL+AVLAHEL H+K LT A+ ++ A+ I
Sbjct: 120 AVTTGIMDKLTPAELEAVLAHELSHVKNRDMAVLTIASFISTIAFYI 166
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Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937) EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: - |
| >sp|Q8PSE5|HTPX2_METMA Protease HtpX homolog 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=htpX2 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2RKK7|HTPX_MOOTA Protease HtpX homolog OS=Moorella thermoacetica (strain ATCC 39073) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|Q3SW84|HTPX_NITWN Protease HtpX homolog OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|B5YKM8|HTPX_THEYD Protease HtpX homolog OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8THH5|HTPX1_METAC Protease HtpX homolog 1 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=htpX1 PE=3 SV=1 | Back alignment and function description |
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| >sp|A1AZW2|HTPX_PARDP Protease HtpX homolog OS=Paracoccus denitrificans (strain Pd 1222) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|B3QED3|HTPX_RHOPT Protease HtpX homolog OS=Rhodopseudomonas palustris (strain TIE-1) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|A3CLJ7|HTPX_STRSV Protease HtpX homolog OS=Streptococcus sanguinis (strain SK36) GN=htpX PE=3 SV=1 | Back alignment and function description |
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| >sp|Q1QRL0|HTPX_NITHX Protease HtpX homolog OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=htpX PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | ||||||
| 225451439 | 363 | PREDICTED: uncharacterized protein LOC10 | 0.907 | 0.650 | 0.769 | 1e-105 | |
| 356558714 | 329 | PREDICTED: uncharacterized protein LOC10 | 0.811 | 0.641 | 0.843 | 1e-105 | |
| 255536903 | 338 | metalloendopeptidase, putative [Ricinus | 0.926 | 0.713 | 0.757 | 1e-104 | |
| 224060249 | 347 | predicted protein [Populus trichocarpa] | 0.896 | 0.671 | 0.784 | 1e-102 | |
| 18405231 | 344 | Peptidase family M48 family protein [Ara | 0.876 | 0.662 | 0.75 | 2e-98 | |
| 21553677 | 344 | unknown [Arabidopsis thaliana] | 0.876 | 0.662 | 0.75 | 2e-98 | |
| 297814950 | 344 | peptidase M48 family protein [Arabidopsi | 0.876 | 0.662 | 0.75 | 3e-98 | |
| 449455858 | 334 | PREDICTED: protease HtpX homolog 1-like | 0.942 | 0.733 | 0.730 | 9e-98 | |
| 57899210 | 324 | peptidase M48-like [Oryza sativa Japonic | 0.780 | 0.626 | 0.794 | 5e-91 | |
| 414876777 | 335 | TPA: putative peptidase M48 family prote | 0.8 | 0.620 | 0.773 | 5e-91 |
| >gi|225451439|ref|XP_002273907.1| PREDICTED: uncharacterized protein LOC100263426 [Vitis vinifera] gi|296082349|emb|CBI21354.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/252 (76%), Positives = 223/252 (88%), Gaps = 16/252 (6%)
Query: 1 MATVTLSSSLFSTQKPRTLSFSYG-VSSDKLNHTSFSGNFKFGSMKQSRRMRLVPVCRAA 59
MA+V LSS++F +G +++ K +SF +F +K+++R+R V VCRAA
Sbjct: 39 MASVPLSSTVF-----------FGSITAKKSRFSSFP--LEFRPLKKTQRVR-VSVCRAA 84
Query: 60 ASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119
SVVFRDLDADDFRHPLDKQNTL+LRAIPGLN++G+ALLGTVTEQ+MLLENIGTSVLVSK
Sbjct: 85 -SVVFRDLDADDFRHPLDKQNTLILRAIPGLNEIGKALLGTVTEQVMLLENIGTSVLVSK 143
Query: 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 179
NQL +LHQLM EAAEILNL+APDLY+RQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE
Sbjct: 144 NQLSDLHQLMLEAAEILNLDAPDLYIRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKE 203
Query: 180 LQAVLAHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCD 239
LQAVLAHELGHLKCDHGVWLTFANILTLGAY++PG+GG+IA+ LEEQLFRWLRAAELTCD
Sbjct: 204 LQAVLAHELGHLKCDHGVWLTFANILTLGAYSLPGLGGLIARQLEEQLFRWLRAAELTCD 263
Query: 240 RAALLVSQDPKL 251
RAALLV+QDPK+
Sbjct: 264 RAALLVAQDPKV 275
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558714|ref|XP_003547648.1| PREDICTED: uncharacterized protein LOC100776801 [Glycine max] | Back alignment and taxonomy information |
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| >gi|255536903|ref|XP_002509518.1| metalloendopeptidase, putative [Ricinus communis] gi|223549417|gb|EEF50905.1| metalloendopeptidase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224060249|ref|XP_002300105.1| predicted protein [Populus trichocarpa] gi|222847363|gb|EEE84910.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|18405231|ref|NP_566808.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|30688648|ref|NP_850640.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|9279635|dbj|BAB01093.1| unnamed protein product [Arabidopsis thaliana] gi|15010606|gb|AAK73962.1| AT3g27110/MOJ10_21 [Arabidopsis thaliana] gi|27363402|gb|AAO11620.1| At3g27110/MOJ10_21 [Arabidopsis thaliana] gi|222423154|dbj|BAH19556.1| AT3G27110 [Arabidopsis thaliana] gi|332643747|gb|AEE77268.1| Peptidase family M48 family protein [Arabidopsis thaliana] gi|332643748|gb|AEE77269.1| Peptidase family M48 family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21553677|gb|AAM62770.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297814950|ref|XP_002875358.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] gi|297321196|gb|EFH51617.1| peptidase M48 family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449455858|ref|XP_004145667.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] gi|449521182|ref|XP_004167609.1| PREDICTED: protease HtpX homolog 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|57899210|dbj|BAD87359.1| peptidase M48-like [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|414876777|tpg|DAA53908.1| TPA: putative peptidase M48 family protein isoform 1 [Zea mays] gi|414876778|tpg|DAA53909.1| TPA: putative peptidase M48 family protein isoform 2 [Zea mays] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 260 | ||||||
| TAIR|locus:2092010 | 344 | AT3G27110 [Arabidopsis thalian | 0.907 | 0.686 | 0.740 | 6.5e-90 | |
| UNIPROTKB|O53978 | 348 | Rv1977 "Uncharacterized protei | 0.726 | 0.543 | 0.309 | 2.9e-23 | |
| TIGR_CMR|CHY_0108 | 281 | CHY_0108 "peptidase, M48 famil | 0.292 | 0.270 | 0.342 | 1.4e-06 | |
| UNIPROTKB|P65815 | 286 | htpX "Protease HtpX homolog" [ | 0.288 | 0.262 | 0.32 | 5.1e-05 | |
| TIGR_CMR|GSU_1189 | 316 | GSU_1189 "peptidase, M48 famil | 0.338 | 0.278 | 0.326 | 0.00014 | |
| UNIPROTKB|Q9KSY9 | 287 | htpX "Protease HtpX" [Vibrio c | 0.492 | 0.445 | 0.263 | 0.00057 | |
| TIGR_CMR|VC_1117 | 287 | VC_1117 "heat shock protein Ht | 0.492 | 0.445 | 0.263 | 0.00057 | |
| UNIPROTKB|Q8EDL5 | 287 | htpX "Protease HtpX" [Shewanel | 0.546 | 0.494 | 0.269 | 0.00074 | |
| TIGR_CMR|SO_2728 | 287 | SO_2728 "peptidase HtpX" [Shew | 0.546 | 0.494 | 0.269 | 0.00074 |
| TAIR|locus:2092010 AT3G27110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
Identities = 183/247 (74%), Positives = 208/247 (84%)
Query: 6 LSSSLFSTQKPRTLSFSYGVSSDKLNHTSFSGNFKFGSMKQSR-RMRLVPVCRAAASVVF 64
LS SL + P+ + FS G S S+ G FG+ K R R+R VP+CRA ++F
Sbjct: 20 LSRSL-GYRLPKKVGFSSGRRS-----VSYIG---FGAEKVGRFRVR-VPICRAVPPLLF 69
Query: 65 RDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSKNQLPE 124
+DLDADDFRHP DKQNTLLLRAIPGLN+ G+ALLG++TEQIMLLENIGTSVLVSKNQL +
Sbjct: 70 KDLDADDFRHPFDKQNTLLLRAIPGLNEFGKALLGSMTEQIMLLENIGTSVLVSKNQLSD 129
Query: 125 LHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVL 184
LH L+ EAAEILN+EAPDLYVRQSPVPNAYTLAISGKKPF+VVHTSL+ELLT ELQAVL
Sbjct: 130 LHGLLVEAAEILNIEAPDLYVRQSPVPNAYTLAISGKKPFIVVHTSLIELLTSAELQAVL 189
Query: 185 AHELGHLKCDHGVWLTFANILTLGAYTIPGIGGMIAQSLEEQLFRWLRAAELTCDRAALL 244
AHELGHLKCDHGVWLTFANILTLGAYT+P G MIA++LEEQL RWLR+AELTCDRAALL
Sbjct: 190 AHELGHLKCDHGVWLTFANILTLGAYTVPAFGQMIARTLEEQLLRWLRSAELTCDRAALL 249
Query: 245 VSQDPKL 251
V+QDPK+
Sbjct: 250 VAQDPKV 256
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| UNIPROTKB|O53978 Rv1977 "Uncharacterized protein" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CHY_0108 CHY_0108 "peptidase, M48 family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P65815 htpX "Protease HtpX homolog" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| TIGR_CMR|GSU_1189 GSU_1189 "peptidase, M48 family" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KSY9 htpX "Protease HtpX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_1117 VC_1117 "heat shock protein HtpX" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8EDL5 htpX "Protease HtpX" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_2728 SO_2728 "peptidase HtpX" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.24 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037849001 | SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (433 aa) | ||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 260 | |||
| COG0501 | 302 | COG0501, HtpX, Zn-dependent protease with chaperon | 2e-19 | |
| pfam01435 | 223 | pfam01435, Peptidase_M48, Peptidase family M48 | 1e-15 | |
| PRK02391 | 296 | PRK02391, PRK02391, heat shock protein HtpX; Provi | 2e-14 | |
| PRK03982 | 288 | PRK03982, PRK03982, heat shock protein HtpX; Provi | 2e-12 | |
| PRK01265 | 324 | PRK01265, PRK01265, heat shock protein HtpX; Provi | 9e-10 | |
| PRK04897 | 298 | PRK04897, PRK04897, heat shock protein HtpX; Provi | 1e-09 | |
| PRK01345 | 317 | PRK01345, PRK01345, heat shock protein HtpX; Provi | 2e-09 | |
| PRK02870 | 336 | PRK02870, PRK02870, heat shock protein HtpX; Provi | 1e-08 | |
| PRK03001 | 283 | PRK03001, PRK03001, M48 family peptidase; Provisio | 2e-08 | |
| PRK03072 | 288 | PRK03072, PRK03072, heat shock protein HtpX; Provi | 1e-05 | |
| PRK05457 | 284 | PRK05457, PRK05457, heat shock protein HtpX; Provi | 1e-04 |
| >gnl|CDD|223575 COG0501, HtpX, Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 2e-19
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 25/191 (13%)
Query: 87 IPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK--NQLPELHQLMTEAAEILNLEA---- 140
I L L+ + + ++L+++G L L+ + AE+
Sbjct: 58 IALLLAFAALLISLLFSKALVLKSLGALTLSEPILLAPRLYAVLLLKVAELARQAGIPHM 117
Query: 141 PDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDH----- 195
P++Y+ ++P PNA+ L K VVV T L++LL EL+AVLAHELGH+K H
Sbjct: 118 PEVYILETPQPNAFALGGGPKNGRVVVTTGLLDLLNDDELEAVLAHELGHIKNRHTLVRL 177
Query: 196 ----GVWLTFANILTL-----GAYTIPGIGGMIAQSLEEQLF-----RWLRAAELTCDRA 241
+ F + TL ++ L L + R E DR
Sbjct: 178 TLRGLLASAFVLLATLALAAGLLGEAALALLLLLLLLALFLATLLVLAFSRKREYEADRF 237
Query: 242 ALLVSQDPKLG 252
A ++ KL
Sbjct: 238 AAKLTGPEKLA 248
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Length = 302 |
| >gnl|CDD|216503 pfam01435, Peptidase_M48, Peptidase family M48 | Back alignment and domain information |
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| >gnl|CDD|179418 PRK02391, PRK02391, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|235186 PRK03982, PRK03982, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|234931 PRK01265, PRK01265, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|235318 PRK04897, PRK04897, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|234944 PRK01345, PRK01345, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|235081 PRK02870, PRK02870, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|179524 PRK03001, PRK03001, M48 family peptidase; Provisional | Back alignment and domain information |
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| >gnl|CDD|235102 PRK03072, PRK03072, heat shock protein HtpX; Provisional | Back alignment and domain information |
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| >gnl|CDD|235478 PRK05457, PRK05457, heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 260 | |||
| PRK04897 | 298 | heat shock protein HtpX; Provisional | 100.0 | |
| PRK02870 | 336 | heat shock protein HtpX; Provisional | 99.97 | |
| PRK02391 | 296 | heat shock protein HtpX; Provisional | 99.97 | |
| PRK03072 | 288 | heat shock protein HtpX; Provisional | 99.97 | |
| PRK01345 | 317 | heat shock protein HtpX; Provisional | 99.97 | |
| PRK03001 | 283 | M48 family peptidase; Provisional | 99.97 | |
| PRK03982 | 288 | heat shock protein HtpX; Provisional | 99.96 | |
| PRK05457 | 284 | heat shock protein HtpX; Provisional | 99.96 | |
| PRK01265 | 324 | heat shock protein HtpX; Provisional | 99.96 | |
| COG0501 | 302 | HtpX Zn-dependent protease with chaperone function | 99.92 | |
| PF01435 | 226 | Peptidase_M48: Peptidase family M48 This is family | 99.89 | |
| KOG2719 | 428 | consensus Metalloprotease [General function predic | 99.75 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.73 | |
| PF05569 | 299 | Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR0 | 99.65 | |
| COG4784 | 479 | Putative Zn-dependent protease [General function p | 99.52 | |
| KOG2661 | 424 | consensus Peptidase family M48 [Posttranslational | 99.43 | |
| COG4219 | 337 | MecR1 Antirepressor regulating drug resistance, pr | 99.39 | |
| PF06114 | 122 | DUF955: Domain of unknown function (DUF955); Inter | 97.86 | |
| PF04228 | 292 | Zn_peptidase: Putative neutral zinc metallopeptida | 97.22 | |
| PF01863 | 205 | DUF45: Protein of unknown function DUF45; InterPro | 97.08 | |
| PRK04351 | 149 | hypothetical protein; Provisional | 96.54 | |
| COG1451 | 223 | Predicted metal-dependent hydrolase [General funct | 96.11 | |
| smart00731 | 146 | SprT SprT homologues. Predicted to have roles in t | 96.09 | |
| PF13203 | 292 | DUF2201_N: Putative metallopeptidase domain | 95.92 | |
| PF10263 | 157 | SprT-like: SprT-like family; InterPro: IPR006640 T | 95.58 | |
| PF04450 | 205 | BSP: Peptidase of plants and bacteria; InterPro: I | 95.1 | |
| PF13699 | 79 | DUF4157: Domain of unknown function (DUF4157) | 94.85 | |
| PF10463 | 206 | Peptidase_U49: Peptidase U49; InterPro: IPR019504 | 94.71 | |
| COG2856 | 213 | Predicted Zn peptidase [Amino acid transport and m | 94.4 | |
| PRK04860 | 160 | hypothetical protein; Provisional | 94.13 | |
| PF10026 | 195 | DUF2268: Predicted Zn-dependent protease (DUF2268) | 93.78 | |
| PF14247 | 220 | DUF4344: Domain of unknown function (DUF4344) | 91.74 | |
| PRK09672 | 305 | phage exclusion protein Lit; Provisional | 91.57 | |
| COG3091 | 156 | SprT Zn-dependent metalloprotease, SprT family [Ge | 90.79 | |
| PF04298 | 222 | Zn_peptidase_2: Putative neutral zinc metallopepti | 89.39 | |
| COG4900 | 133 | Predicted metallopeptidase [General function predi | 89.28 | |
| TIGR00181 | 591 | pepF oligoendopeptidase F. This family represents | 87.93 | |
| COG3590 | 654 | PepO Predicted metalloendopeptidase [Posttranslati | 87.82 | |
| PF02031 | 132 | Peptidase_M7: Streptomyces extracellular neutral p | 86.45 | |
| PF12388 | 211 | Peptidase_M57: Dual-action HEIGH metallo-peptidase | 86.32 | |
| COG1164 | 598 | Oligoendopeptidase F [Amino acid transport and met | 86.2 | |
| PF08325 | 186 | WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1 | 83.14 | |
| TIGR02289 | 549 | M3_not_pepF oligoendopeptidase, M3 family. This fa | 82.2 | |
| PF13485 | 128 | Peptidase_MA_2: Peptidase MA superfamily | 81.97 |
| >PRK04897 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=252.39 Aligned_cols=214 Identities=18% Similarity=0.226 Sum_probs=156.3
Q ss_pred cccccccc-eeeeeeeeeeehhhhccCCCcccccCccchHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHcCCccccCC
Q 024914 41 FGSMKQSR-RMRLVPVCRAAASVVFRDLDADDFRHPLDKQNTLLLRAIPGLNDLGRALLGTVTEQIMLLENIGTSVLVSK 119 (260)
Q Consensus 41 ~~~~~~~~-~~~~v~~~~~~~~~~l~gl~~~~~~hp~d~~~~~~l~~lpgl~~~~~~~~~~~~~~~~~~~~~g~~v~v~~ 119 (260)
|.|+++|+ ||.+++ ..+...+.+.|...+.+..+ +......+..+. .++..++.++....+..+..+ ..+++|
T Consensus 3 ~~~~~~n~~~t~~ll-~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-a~~v~~ 76 (298)
T PRK04897 3 YEQIASNKRKTVFLL-VVFFLLLALVGAAVGYLFLN-SGLGGLIIALII---GVIYALIMIFQSTNVVMSMNH-AREVTE 76 (298)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccc-cchhHHHHHHHH---HHHHHHHHHHhhHHHHHHhCC-CEECCh
Confidence 67899999 887665 55555556655433321111 111111111111 235567888888888888775 568899
Q ss_pred CChHHHHHHHHHHHHHhCCCCCcEEEEeCCCCceEEeeccCCCCEEEEcHHHHhcCCHHHHHHHHHHHHHHHHccChHHH
Q 024914 120 NQLPELHQLMTEAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVELLTRKELQAVLAHELGHLKCDHGVWL 199 (260)
Q Consensus 120 ~~~p~L~~~v~~l~~~l~i~~p~vyv~~~~~~NAfa~G~~~~~~~Ivi~~~Ll~~L~~~EL~aVLaHElgHi~~~H~~~~ 199 (260)
+|.|++++.++++|++.|+|.|++|+++++.+|||++|.++.++.|++++||++.+++||++||+|||+||++++|..++
T Consensus 77 ~~~p~L~~~v~~la~~~gip~p~v~v~~~~~~NAfa~G~~~~~~~v~vt~gLl~~l~~~El~aVlAHElgHi~~~d~~~~ 156 (298)
T PRK04897 77 EEAPELWHIVEDMAMVAQIPMPRVFIIDDPSPNAFATGSSPKNAAVAVTTGLLAIMNREELEGVIGHEISHIRNYDIRLS 156 (298)
T ss_pred hhhHHHHHHHHHHHHHcCCCCCcEEEecCCCCceEEeccCCCCcEEEeehHHHhhCCHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999877788999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHH----------hch------------h-H---HHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHh
Q 024914 200 TFANILTLGAY----------TIP------------G-I---GGMI------AQSLE--EQLFRWLRAAELTCDRAALLV 245 (260)
Q Consensus 200 ~~~~~l~~~~~----------~~p------------~-l---g~~~------~~~l~--~~l~~~sR~~E~~ADr~a~~~ 245 (260)
++...+..... +.. . . ..++ ..++. .....+||.+|++||++|+++
T Consensus 157 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~ll~~~~SR~rE~~AD~~A~~l 236 (298)
T PRK04897 157 TIAVALASAITLLSDIAGRMMWWGGGSRRRDDDRDGGGLQIILLIVSLLLLILAPLAATLIQLAISRQREYLADASSVEL 236 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 76543221110 000 0 0 0000 01111 123578999999999999999
Q ss_pred cCChHHHHHHHHhcC
Q 024914 246 SQDPKLGAVHLWLIN 260 (260)
Q Consensus 246 ~gdp~a~~sAL~kI~ 260 (260)
++||+++++||.|+.
T Consensus 237 t~~p~~La~AL~KL~ 251 (298)
T PRK04897 237 TRNPQGLISALEKIS 251 (298)
T ss_pred hCCHHHHHHHHHHHH
Confidence 999999999999973
|
|
| >PRK02870 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK02391 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK03072 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK01345 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK03001 M48 family peptidase; Provisional | Back alignment and domain information |
|---|
| >PRK03982 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK05457 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >PRK01265 heat shock protein HtpX; Provisional | Back alignment and domain information |
|---|
| >COG0501 HtpX Zn-dependent protease with chaperone function [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF01435 Peptidase_M48: Peptidase family M48 This is family M48 in the peptidase classification | Back alignment and domain information |
|---|
| >KOG2719 consensus Metalloprotease [General function prediction only] | Back alignment and domain information |
|---|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
| >PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >COG4784 Putative Zn-dependent protease [General function prediction only] | Back alignment and domain information |
|---|
| >KOG2661 consensus Peptidase family M48 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG4219 MecR1 Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF06114 DUF955: Domain of unknown function (DUF955); InterPro: IPR010359 This is a family of bacterial and viral proteins with undetermined function | Back alignment and domain information |
|---|
| >PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases | Back alignment and domain information |
|---|
| >PF01863 DUF45: Protein of unknown function DUF45; InterPro: IPR002725 Members of this family are found in some archaebacteria, as well as Helicobacter pylori | Back alignment and domain information |
|---|
| >PRK04351 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG1451 Predicted metal-dependent hydrolase [General function prediction only] | Back alignment and domain information |
|---|
| >smart00731 SprT SprT homologues | Back alignment and domain information |
|---|
| >PF13203 DUF2201_N: Putative metallopeptidase domain | Back alignment and domain information |
|---|
| >PF10263 SprT-like: SprT-like family; InterPro: IPR006640 This is a family of uncharacterised bacterial proteins which includes Escherichia coli SprT (P39902 from SWISSPROT) | Back alignment and domain information |
|---|
| >PF04450 BSP: Peptidase of plants and bacteria; InterPro: IPR007541 These basic secretory proteins (BSPs) are believed to be part of the plants defence mechanism against pathogens [] | Back alignment and domain information |
|---|
| >PF13699 DUF4157: Domain of unknown function (DUF4157) | Back alignment and domain information |
|---|
| >PF10463 Peptidase_U49: Peptidase U49; InterPro: IPR019504 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >COG2856 Predicted Zn peptidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK04860 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF10026 DUF2268: Predicted Zn-dependent protease (DUF2268); InterPro: IPR018728 This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function | Back alignment and domain information |
|---|
| >PF14247 DUF4344: Domain of unknown function (DUF4344) | Back alignment and domain information |
|---|
| >PRK09672 phage exclusion protein Lit; Provisional | Back alignment and domain information |
|---|
| >COG3091 SprT Zn-dependent metalloprotease, SprT family [General function prediction only] | Back alignment and domain information |
|---|
| >PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases | Back alignment and domain information |
|---|
| >COG4900 Predicted metallopeptidase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00181 pepF oligoendopeptidase F | Back alignment and domain information |
|---|
| >COG3590 PepO Predicted metalloendopeptidase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57 | Back alignment and domain information |
|---|
| >COG1164 Oligoendopeptidase F [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PF08325 WLM: WLM domain; InterPro: IPR013536 The WLM (WSS1-like metalloprotease) domain is a globular domain related to the zincin-like superfamily of Zn-dependent peptidase | Back alignment and domain information |
|---|
| >TIGR02289 M3_not_pepF oligoendopeptidase, M3 family | Back alignment and domain information |
|---|
| >PF13485 Peptidase_MA_2: Peptidase MA superfamily | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} Length = 107 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-12
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 117 VSKNQLPELHQLMT---EAAEILNLEAPDLYVRQSPVPNAYTLAISGKKPFVVVHTSLVE 173
+ + H L+ A+ + P + + S NA+ V V T L+
Sbjct: 17 IESPRNETEHWLLETVGRQAQQAGIGMPTVAIYDSADINAFATGAKRDDSLVAVSTGLLH 76
Query: 174 LLTRKELQAVLAHELGHLK 192
+TR E +AVLAHE+ H+
Sbjct: 77 NMTRDEAEAVLAHEVSHIA 95
|
| >3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} Length = 253 | Back alignment and structure |
|---|
| >4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} Length = 482 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 260 | |||
| 4aw6_A | 482 | CAAX prenyl protease 1 homolog; hydrolase, M48 pep | 99.89 | |
| 3c37_A | 253 | Peptidase, M48 family; Q74D82, GSR143A, structural | 99.87 | |
| 3cqb_A | 107 | Probable protease HTPX homolog; heat shock protein | 99.8 | |
| 3dte_A | 301 | IRRE protein; radiotolerance, gene regulation, met | 97.03 | |
| 3ahn_A | 564 | Oligopeptidase, PZ peptidase A; hydrolase, hydrola | 80.34 |
| >4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-22 Score=192.17 Aligned_cols=142 Identities=25% Similarity=0.223 Sum_probs=111.6
Q ss_pred ccCCCChHHHHHHHHHHHHHhCCCCCcEEEEe----CCCCceEEeeccCCCCEEEEcHHHHhc-----------------
Q 024914 116 LVSKNQLPELHQLMTEAAEILNLEAPDLYVRQ----SPVPNAYTLAISGKKPFVVVHTSLVEL----------------- 174 (260)
Q Consensus 116 ~v~~~~~p~L~~~v~~l~~~l~i~~p~vyv~~----~~~~NAfa~G~~~~~~~Ivi~~~Ll~~----------------- 174 (260)
+.+|.++++|++.++++|++.|+|.|++||++ ++.+|||++|+++ ++.||+.+++++.
T Consensus 225 k~~Pl~dg~L~~~Ie~la~~~~fp~~~v~vv~gSkRs~~~NAy~~G~~~-~krIVl~dtLl~~~~~~~~~~~~~~~~~~~ 303 (482)
T 4aw6_A 225 KFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFK-NKRIVLFDTLLEEYSVLNKDIQEDSGMEPR 303 (482)
T ss_dssp CEEECCSSHHHHHHHHHHHHTTCCEEEEEEECGGGTBSCCCEEEEESSS-CEEEEEEHHHHC------------------
T ss_pred CCccCCcHHHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCceEEEcCCC-CcEEEEEchHHHhccccccccccccccccc
Confidence 45677889999999999999999999999998 7899999999864 5688888888887
Q ss_pred --------------------CCHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH------Hhc---------------h
Q 024914 175 --------------------LTRKELQAVLAHELGHLKCDHGVWLTFANILTLGA------YTI---------------P 213 (260)
Q Consensus 175 --------------------L~~~EL~aVLaHElgHi~~~H~~~~~~~~~l~~~~------~~~---------------p 213 (260)
|++||++||+|||+||++++|..++++...+..+. ..+ |
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~l~~~El~aVlaHElgH~~~~~~~~~~~~~~i~~~~~~~l~~~l~~~~~l~~~~G~~~~~p 383 (482)
T 4aw6_A 304 NEEEGNSEEIKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQP 383 (482)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSHHHHHTTCCSCCC
T ss_pred ccccccchhhcccchhhccCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcchhhHhhcCCCCccc
Confidence 89999999999999999999999988654432111 000 1
Q ss_pred h-HHHHH-H----HH----HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHhc
Q 024914 214 G-IGGMI-A----QS----LEEQLFRWLRAAELTCDRAALLVSQDPKLGAVHLWLI 259 (260)
Q Consensus 214 ~-lg~~~-~----~~----l~~~l~~~sR~~E~~ADr~a~~~~gdp~a~~sAL~kI 259 (260)
. ++.++ . .+ .......+||.+|++||++|++. ++|+++++||.|+
T Consensus 384 ~~~~~llv~~~i~~P~~~l~~~i~~~~SR~~E~eAD~~a~~l-g~p~~L~~AL~KL 438 (482)
T 4aw6_A 384 TLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKL-GKAKDLYSALIKL 438 (482)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 1 11111 1 11 12245788999999999999998 6799999999987
|
| >3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
| >3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
| >3dte_A IRRE protein; radiotolerance, gene regulation, metallopeptidase; 2.60A {Deinococcus deserti} PDB: 3dti_A 3dtk_A | Back alignment and structure |
|---|
| >3ahn_A Oligopeptidase, PZ peptidase A; hydrolase, hydrolase-hydrolase inhibitor complex; HET: 3A1; 1.80A {Geobacillus SP} PDB: 3ahm_A* 3aho_A* 2h1n_A 2h1j_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00