Citrus Sinensis ID: 024946

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
MALRTCQNFASPFVSSIKLTKKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPDNFRE
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccEEcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHccHHHHHHHEEEcccccHHHHHHHccccccccccEEEEEccccHHHcccccccccccccc
ccHHHHHHccccccccHHHccccccccccccccccccHccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcEEcccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccHHHcEEEEEcccHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHccHHHccHHHcc
malrtcqnfaspfvssikltkkpirnfkapvkncqsdphesRKLVLQVKERLEKdynslpvgkngrddEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGkayvhdfldineRPVLIVVASkhlpavhdpvedEKLCVFFIEKAlsklppgkeqilgiidlrgfgtenadLKFLTFLFDVFYyyhpkrlgevlfveapfvfkpfwqlTKPLLKSYASLAKFCSVETVRKEYFteatvpdnfre
malrtcqnfaspfvssikltkkpirnfkapvkncqsdphesrKLVLQVKERLekdynslpvgkngrddeDMILWFLKDRKFSIEESLAKLTKaikwrqefrvselnedsvRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKalsklppgkeqILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYfteatvpdnfre
MALRTCQNFASPFVSSIKLTKKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPDNFRE
************FV**I***************************************************EDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEA********
*********************************************LQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPDNFR*
MALRTCQNFASPFVSSIKLTKKPIRNFKAPV**********RKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPDNFRE
************************************DPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALRTCQNFASPFVSSIKLTKKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEATVPDNFRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query260 2.2.26 [Sep-21-2011]
Q9CWP6 518 Motile sperm domain-conta yes no 0.869 0.436 0.268 9e-14
Q10138 444 CRAL-TRIO domain-containi yes no 0.703 0.412 0.271 2e-13
Q8NHP6 518 Motile sperm domain-conta yes no 0.834 0.418 0.271 6e-13
Q06705408 Phosphatidylinositol tran yes no 0.596 0.379 0.304 2e-11
Q55CU8364 Random slug protein 5 OS= no no 0.584 0.417 0.289 6e-11
Q757H2436 Phosphatidylinositol tran yes no 0.673 0.401 0.256 8e-10
Q10137286 Sec14 cytosolic factor OS no no 0.726 0.660 0.269 2e-08
Q9UUC2 355 CRAL-TRIO domain-containi no no 0.607 0.445 0.311 3e-08
Q9HDZ5388 CRAL-TRIO domain-containi no no 0.626 0.420 0.237 1e-07
P24859301 SEC14 cytosolic factor OS no no 0.646 0.558 0.278 8e-07
>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2 Back     alignment and function desciption
 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 125/257 (48%), Gaps = 31/257 (12%)

Query: 1   MALRTCQNFASPFVSSIKLTKKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLP 60
           MA    QN A       KL  +  R F+A     +S+ ++SR +     ERL++D N + 
Sbjct: 1   MAENNAQNKA-------KLISETRRRFEAEYVTEKSEKYDSRDV-----ERLQQDDNWV- 47

Query: 61  VGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSV-RGIAESGKA 119
                   E  + W    R   ++E+L  L ++ +WR+EF V++L+E S+ R + E G  
Sbjct: 48  --------ESYLYW----RHNVVDETLKMLDESFQWRKEFSVNDLSESSIPRWLLELGGI 95

Query: 120 YVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLR 179
           Y+H + D     +  +    H+      ++ +KL  F++E+  +K   GK  I  + D+ 
Sbjct: 96  YLHGY-DKEGNKLFWIRVKYHIKDQKTIMDKKKLIAFWLER-YAKRENGK-PITVMFDMS 152

Query: 180 GFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKF 238
             G  + D+ F+ F+ + F  Y+PK L +++  + P++    +++ K  L   A SL KF
Sbjct: 153 ETGLNSIDMDFVRFIINCFKVYYPKYLSKIVIFDMPWIMNAAFKIVKSWLGPEAVSLLKF 212

Query: 239 CSVETVRKEYFTEATVP 255
            S   ++ EY +   +P
Sbjct: 213 TSKNEIQ-EYVSVEYLP 228

Mus musculus (taxid: 10090)
>sp|Q10138|YAS2_SCHPO CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.02 PE=1 SV=1 Back     alignment and function description
>sp|Q8NHP6|MSPD2_HUMAN Motile sperm domain-containing protein 2 OS=Homo sapiens GN=MOSPD2 PE=1 SV=1 Back     alignment and function description
>sp|Q06705|CSR1_YEAST Phosphatidylinositol transfer protein CSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSR1 PE=1 SV=1 Back     alignment and function description
>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1 Back     alignment and function description
>sp|Q757H2|CSR1_ASHGO Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSR1 PE=3 SV=2 Back     alignment and function description
>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1 Back     alignment and function description
>sp|Q9UUC2|YGR1_SCHPO CRAL-TRIO domain-containing protein C365.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC365.01 PE=2 SV=1 Back     alignment and function description
>sp|Q9HDZ5|YKP9_SCHPO CRAL-TRIO domain-containing protein C589.09, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC589.09 PE=4 SV=1 Back     alignment and function description
>sp|P24859|SEC14_KLULA SEC14 cytosolic factor OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SEC14 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
224135861264 predicted protein [Populus trichocarpa] 1.0 0.984 0.724 1e-109
255540591260 transporter, putative [Ricinus communis] 1.0 1.0 0.703 1e-109
359491329260 PREDICTED: SEC14 cytosolic factor-like [ 1.0 1.0 0.719 1e-106
449441005261 PREDICTED: motile sperm domain-containin 0.992 0.988 0.684 1e-104
297797291263 transporter [Arabidopsis lyrata subsp. l 0.95 0.939 0.676 9e-97
356513611260 PREDICTED: sec14 cytosolic factor-like [ 0.938 0.938 0.686 2e-96
79546079263 Sec14p-like phosphatidylinositol transfe 0.95 0.939 0.672 3e-96
356562712262 PREDICTED: CRAL-TRIO domain-containing p 0.903 0.896 0.703 2e-94
357143311256 PREDICTED: motile sperm domain-containin 0.961 0.976 0.634 1e-90
218190610266 hypothetical protein OsI_06980 [Oryza sa 0.830 0.812 0.717 3e-89
>gi|224135861|ref|XP_002322179.1| predicted protein [Populus trichocarpa] gi|222869175|gb|EEF06306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/261 (72%), Positives = 225/261 (86%), Gaps = 1/261 (0%)

Query: 1   MALRTCQNFASPFVSSIKLTKKPIRNFKAPVKNCQSDPHESRK-LVLQVKERLEKDYNSL 59
           MA+RTC N   P ++ + LTK P RN K  V++C    ++S K L+++VKE+L +DY+SL
Sbjct: 1   MAIRTCLNLGRPQIAPVTLTKSPSRNCKFSVQSCSLSSNQSHKQLIVEVKEKLGRDYHSL 60

Query: 60  PVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKA 119
           PVGKNGRDDE+MILWFLKDRKFS++E+++KLTKAIKWR+EF+VSEL+E+SV+ IA++GKA
Sbjct: 61  PVGKNGRDDEEMILWFLKDRKFSVDEAVSKLTKAIKWREEFKVSELSEESVKSIADTGKA 120

Query: 120 YVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLR 179
           YVHD LD+  +PVLIVVASKHLPAVHDPVEDEKLCVF IEKAL KL  GKEQILGIIDLR
Sbjct: 121 YVHDSLDVYGKPVLIVVASKHLPAVHDPVEDEKLCVFLIEKALRKLAAGKEQILGIIDLR 180

Query: 180 GFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFC 239
           GF T NADLKFLTFLFDV YYY+PKRLG+VLFVEAPF+FKP WQ+ KPLL+SY SL +FC
Sbjct: 181 GFSTRNADLKFLTFLFDVIYYYYPKRLGQVLFVEAPFIFKPIWQVAKPLLRSYTSLVRFC 240

Query: 240 SVETVRKEYFTEATVPDNFRE 260
           SVETVRKEYFTE T+P NFRE
Sbjct: 241 SVETVRKEYFTEETLPANFRE 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255540591|ref|XP_002511360.1| transporter, putative [Ricinus communis] gi|223550475|gb|EEF51962.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359491329|ref|XP_003634267.1| PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera] gi|297733742|emb|CBI14989.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441005|ref|XP_004138274.1| PREDICTED: motile sperm domain-containing protein 2-like [Cucumis sativus] gi|449477662|ref|XP_004155085.1| PREDICTED: motile sperm domain-containing protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297797291|ref|XP_002866530.1| transporter [Arabidopsis lyrata subsp. lyrata] gi|297312365|gb|EFH42789.1| transporter [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356513611|ref|XP_003525505.1| PREDICTED: sec14 cytosolic factor-like [Glycine max] Back     alignment and taxonomy information
>gi|79546079|ref|NP_201111.2| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] gi|332010310|gb|AED97693.1| Sec14p-like phosphatidylinositol transfer family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356562712|ref|XP_003549613.1| PREDICTED: CRAL-TRIO domain-containing protein C3H8.02-like [Glycine max] Back     alignment and taxonomy information
>gi|357143311|ref|XP_003572877.1| PREDICTED: motile sperm domain-containing protein 2-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218190610|gb|EEC73037.1| hypothetical protein OsI_06980 [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query260
TAIR|locus:2161942263 AT5G63060 "AT5G63060" [Arabido 0.95 0.939 0.672 5.7e-91
TAIR|locus:2138606301 AT4G08690 "AT4G08690" [Arabido 0.757 0.654 0.282 5.7e-20
DICTYBASE|DDB_G0275959247 DDB_G0275959 "cellular retinal 0.761 0.801 0.305 1.5e-19
ZFIN|ZDB-GENE-041114-1 526 mospd2 "motile sperm domain co 0.75 0.370 0.272 5.2e-17
MGI|MGI:1924013 518 Mospd2 "motile sperm domain co 0.776 0.389 0.280 2.9e-16
UNIPROTKB|A6QQK3 492 MOSPD2 "MOSPD2 protein" [Bos t 0.803 0.424 0.265 9e-16
UNIPROTKB|Q8NHP6 518 MOSPD2 "Motile sperm domain-co 0.803 0.403 0.265 1e-15
DICTYBASE|DDB_G0293606351 DDB_G0293606 "cellular retinal 0.726 0.538 0.265 1.9e-15
RGD|1563952 479 Mospd2 "motile sperm domain co 0.803 0.436 0.261 2.3e-15
TAIR|locus:2198135255 AT1G01630 "AT1G01630" [Arabido 0.619 0.631 0.251 3.3e-15
TAIR|locus:2161942 AT5G63060 "AT5G63060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
 Identities = 166/247 (67%), Positives = 201/247 (81%)

Query:    13 FVSSIKLTKKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVGKNGRDDEDMI 72
             F SS  L     RN +  V++C S+   + KLVL+VKERL KD  SLP+GK GRDDEDMI
Sbjct:    16 FKSSKNLNINRSRNCRFSVRSCVSESQHAHKLVLEVKERLAKDCTSLPLGKYGRDDEDMI 75

Query:    73 LWFLKDRKFSIEESLAKLTKAIKWRQEFRVSELNEDSVRGIAESGKAYVHDFLDINERPV 132
             LWFLKDR+FS++E++ KLTKAIKWR EF+V EL+EDS++   ++GKAYVH FLD+  RPV
Sbjct:    76 LWFLKDRRFSVDEAIGKLTKAIKWRHEFKVDELSEDSIKAATDTGKAYVHGFLDVKGRPV 135

Query:   133 LIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLT 192
             +IV  +KH+P + DP+EDEKLCVF +EKALSKLP G+ +ILGI DLRGFG++NADLKFLT
Sbjct:   136 VIVAPAKHIPGLLDPIEDEKLCVFLLEKALSKLPAGQHKILGIFDLRGFGSQNADLKFLT 195

Query:   193 FLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKEYFTEA 252
             FLFDVFYYY+P RL EVLFV+APF+F+P WQ TKPL+K YASL KFCS ETVRKEYFTE 
Sbjct:   196 FLFDVFYYYYPSRLDEVLFVDAPFIFQPIWQFTKPLVKQYASLVKFCSAETVRKEYFTEE 255

Query:   253 TVPDNFR 259
             T+P NFR
Sbjct:   256 TLPSNFR 262
GO:0005215 "transporter activity" evidence=ISS
GO:0006810 "transport" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275959 DDB_G0275959 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-1 mospd2 "motile sperm domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1924013 Mospd2 "motile sperm domain containing 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|A6QQK3 MOSPD2 "MOSPD2 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NHP6 MOSPD2 "Motile sperm domain-containing protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0293606 DDB_G0293606 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
RGD|1563952 Mospd2 "motile sperm domain containing 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2198135 AT1G01630 "AT1G01630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-18
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 1e-17
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 1e-16
pfam13716149 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain 2e-06
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score = 79.3 bits (196), Expect = 2e-18
 Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 4/121 (3%)

Query: 115 ESGKAYVHDFL--DINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALS--KLPPGKE 170
           E  KAY+      D + RPVLI  A +         E  +  V+ +EK L   K   G E
Sbjct: 3   ELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIE 62

Query: 171 QILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLK 230
               I DL+G    N DL  L  +  +   ++P+RLG+V  +  P+ F+  W++ KP L 
Sbjct: 63  GFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFLD 122

Query: 231 S 231
            
Sbjct: 123 E 123

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 260
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.98
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.97
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.95
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.6
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 98.97
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.55
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 92.6
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 91.44
smart0054643 CUE Domain that may be involved in binding ubiquit 89.72
PF0697260 DUF1296: Protein of unknown function (DUF1296); In 82.46
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 81.8
>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=9.2e-48  Score=327.27  Aligned_cols=196  Identities=36%  Similarity=0.652  Sum_probs=187.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhcCCCC-CChhhHHHHHhcCceeeccCCCCCCCcEEEEecCccCC
Q 024946           64 NGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQEFRVSE-LNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLP  142 (260)
Q Consensus        64 ~~~~~d~~llRfLra~~~dv~~A~~~l~~~~~wR~~~~~~~-i~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~  142 (260)
                      ....+|.+++|||||++||+++|.+|+.+++.||+++++.. +..+++..+++.|++|++| .|++||||+|+++..+.+
T Consensus        44 ~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~Ev~~e~~tGK~yi~G-~D~~gRPVl~~~~~~~~q  122 (324)
T KOG1470|consen   44 SKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEADEVAAELETGKAYILG-HDKDGRPVLYLRPRPHRQ  122 (324)
T ss_pred             HhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHHHHHHHhhcCcEEEec-ccCCCCeEEEEecCCCCC
Confidence            35678999999999999999999999999999999999988 8888899999999999999 799999999999988888


Q ss_pred             CCCChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCCCCHHHHHHHHHHHhccccccccceEEEcCCcchHHHH
Q 024946          143 AVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENADLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFW  222 (260)
Q Consensus       143 ~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~  222 (260)
                      +..+.+...|+++|+||.++..++.+++++++++|++|++++|++++.++.+++++|+||||||++.+|+|+||+|..+|
T Consensus       123 n~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~w  202 (324)
T KOG1470|consen  123 NTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPFW  202 (324)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccccc-CeEEEccchhhhhccCCCCCCCcccCC
Q 024946          223 QLTKPLLKSYA-SLAKFCSVETVRKEYFTEATVPDNFRE  260 (260)
Q Consensus       223 ~~vkpfL~~~t-~ki~~~~~~~ll~~~i~~~~LP~~yGg  260 (260)
                      +++||||+++| +||+|+.+.+.+.+|||+++||..|||
T Consensus       203 kiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l~s~~GG  241 (324)
T KOG1470|consen  203 KIIKPFLDPKTASKVKFVEPKDDLSEYFDESQLPSLFGG  241 (324)
T ss_pred             HHhhhccChhhhceeEEecChhHHHhhCCccccchhhCC
Confidence            99999999998 999999876656899999999999999

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 8e-08
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 2e-07
4fmm_A360 Dimeric Sec14 Family Homolog 3 From Saccharomyces C 9e-07
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 3e-05
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure 
Iteration: 1

 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 33/233 (14%)
Query: 40  ESRKLVLQVKE-RLEKDYNSLPVGKNGRDDEDMILWFLKDRKFSIEESLAKLTKAIKWRQ 98
           E  + +LQ +   LEK+Y         R D+  +L FL+ RKF I  S+    +  +WR+
Sbjct: 38  EQEEALLQFRSILLEKNYKE-------RLDDSTLLRFLRARKFDINASVEMFVETERWRE 90
Query: 99  EFRVSELNEDSVRG----------IAESGKAYVHDFLDINERPVLIV-VASKHLPAVHDP 147
           E+  + + ED              +A+    Y H  +D + RP+    +   +L  ++  
Sbjct: 91  EYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHH-VDKDGRPLYFAELGGINLKKMYKI 149
Query: 148 VEDEKLCVFFIEK----ALSKLPPGK-------EQILGIIDLRGFGTENAD--LKFLTFL 194
             ++++    +++    A  ++P          E    ++DL+G    NA   L ++  +
Sbjct: 150 TTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDV 209
Query: 195 FDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYASLAKFCSVETVRKE 247
            D+   Y+P+R+G+   + +PF F   +++ KP L        F    + +KE
Sbjct: 210 ADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKE 262
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360 Back     alignment and structure
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query260
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 9e-27
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 8e-24
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 2e-23
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 1e-22
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 3e-22
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
 Score =  104 bits (262), Expect = 9e-27
 Identities = 38/240 (15%), Positives = 78/240 (32%), Gaps = 23/240 (9%)

Query: 32  KNCQSDPHESRKLVLQVKERLEK------DYNSLPVGKNGRDDEDMILWFLKDRKFSIEE 85
                      + V +++E ++       +       +    D    L F++ RKF++  
Sbjct: 49  DELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGR 108

Query: 86  SLAKLTKAIKWRQEFR--VSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPA 143
           +   L   + +R ++      L+ ++VR   E+G   V    D   R V++         
Sbjct: 109 AYELLRGYVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQ 168

Query: 144 VHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTENA---DLKFLTFLFDVFYY 200
                E  +   F +EK L            I + +GF  + A       L  + D+   
Sbjct: 169 EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQD 228

Query: 201 YHPKRLGEVLFVEAPFVFKPFWQLTKPLLK------------SYASLAKFCSVETVRKEY 248
             P     + F+  P+ F   + + KP LK              +   +      +  ++
Sbjct: 229 SFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGFYQEIDENILPSDF 288
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1olm_A 403 SEC14-like protein 2; lipid-binding protein, chole 100.0
3pg7_A 256 Neurofibromin; SEC lipid binding domain, PH domain 99.36
3peg_A 290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.14
2dhy_A67 CUE domain-containing protein 1; structural genomi 92.97
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 92.4
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 88.48
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 88.38
2di0_A71 Activating signal cointegrator 1 complex subunit 2 87.54
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 87.37
2dna_A67 Unnamed protein product; ubiquitin associated doma 86.9
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 86.57
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 86.38
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 86.36
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 85.1
1ufz_A83 Hypothetical protein BAB28515; HBS1-like domain, s 84.44
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 84.03
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 83.42
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 82.6
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 82.5
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 82.3
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 81.55
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 80.62
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
Probab=100.00  E-value=3.8e-52  Score=363.89  Aligned_cols=238  Identities=18%  Similarity=0.255  Sum_probs=196.5

Q ss_pred             cCCCCCccCCCCCCCCChHHHHHHHHHHHHHHHhccCCCCCC-------CCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024946           21 KKPIRNFKAPVKNCQSDPHESRKLVLQVKERLEKDYNSLPVG-------KNGRDDEDMILWFLKDRKFSIEESLAKLTKA   93 (260)
Q Consensus        21 ~~p~~~~~~~~~~~~~~~e~~~~~i~elr~~l~~~~~~lp~~-------~~~~~~d~~llRfLra~~~dv~~A~~~l~~~   93 (260)
                      ..|....+.+++|++|+|+.++++|++||+|++++. .++..       ...+.||.+|+|||||++||+++|.++|.+|
T Consensus        38 ~l~~~~~~~a~~eL~E~~~~~~~~l~~LR~wi~~~p-~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~  116 (316)
T 3hx3_A           38 QLPRHTLQKAKDELNEREETREEAVRELQEMVQAQA-ASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGY  116 (316)
T ss_dssp             ------------------CHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhCC-CccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            455556678889999999999999999999998873 44311       0146799999999999999999999999999


Q ss_pred             HHHhhhcC--CCCCChhhHHHHHhcCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccc
Q 024946           94 IKWRQEFR--VSELNEDSVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQ  171 (260)
Q Consensus        94 ~~wR~~~~--~~~i~~~~~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~  171 (260)
                      ++||++++  +++++++++...++.|..++.+++|++||||+++++|+++++..+.++++|++++++|.++..++.+++|
T Consensus       117 l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g  196 (316)
T 3hx3_A          117 VNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQING  196 (316)
T ss_dssp             HHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHC
T ss_pred             HHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcce
Confidence            99999998  5778888888888999866543389999999999999999999999999999999999998765567789


Q ss_pred             eEEEEeCCCCCCCCC---CHHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccc--hhhh
Q 024946          172 ILGIIDLRGFGTENA---DLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSV--ETVR  245 (260)
Q Consensus       172 ~~~IiD~~g~~~~~~---~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~--~~ll  245 (260)
                      +++|+|++|++++|+   +++.++.+++++|++||+|++++||||+|++|+++|+++||||+++| +||.+++.  +++ 
T Consensus       197 ~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~KI~~~~~~~~~L-  275 (316)
T 3hx3_A          197 FCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHGDDLSGF-  275 (316)
T ss_dssp             EEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTTEEEEETCCHHH-
T ss_pred             EEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhheEEeCCCHHHH-
Confidence            999999999999874   78999999999999999999999999999999999999999999998 99999853  445 


Q ss_pred             hccCCCCCCCcccCC
Q 024946          246 KEYFTEATVPDNFRE  260 (260)
Q Consensus       246 ~~~i~~~~LP~~yGg  260 (260)
                      .++||+++||++|||
T Consensus       276 ~~~I~~~~LP~eyGG  290 (316)
T 3hx3_A          276 YQEIDENILPSDFGG  290 (316)
T ss_dssp             HHHSCGGGSBGGGTS
T ss_pred             HhhCCHhhCcHhhCC
Confidence            799999999999999
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 260
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 7e-17
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 5e-10
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 2e-08
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 4e-07
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 3e-04
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 7e-17
 Identities = 24/126 (19%), Positives = 47/126 (37%), Gaps = 3/126 (2%)

Query: 109 SVRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPG 168
           S+ G+ ++G   V    D     VLI   +   P V    +  ++ +   E  + ++   
Sbjct: 1   SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQ 60

Query: 169 KEQILGIIDLRGFGTENAD---LKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLT 225
           +  I  I DL G+   +A          +  V     P ++  +  +  P +F   + + 
Sbjct: 61  RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120

Query: 226 KPLLKS 231
           KP L  
Sbjct: 121 KPFLTE 126
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query260
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 100.0
d1olma3199 Supernatant protein factor (SPF), middle domain {H 99.97
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.66
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.56
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.52
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 93.41
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 92.39
d1mn3a_54 Vacuolar protein sorting-associated protein vps9 { 92.36
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 92.32
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 89.27
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 88.9
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 87.82
d1ufza_83 HBS1-like protein {Mouse (Mus musculus) [TaxId: 10 81.61
d2di0a163 Activating signal cointegrator 1 complex subunit 2 80.44
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=229.70  Aligned_cols=150  Identities=15%  Similarity=0.213  Sum_probs=136.5

Q ss_pred             HHHHHhcCceeeccCCCCCCCcEEEEecCccCCCCCChhhhhHHHHHHHHHHHHhCCCCccceEEEEeCCCCCCCC---C
Q 024946          110 VRGIAESGKAYVHDFLDINERPVLIVVASKHLPAVHDPVEDEKLCVFFIEKALSKLPPGKEQILGIIDLRGFGTEN---A  186 (260)
Q Consensus       110 ~~~~l~~~~~~~~g~~D~~Grpv~~~~~~~~~~~~~~~~~~~r~~~~~~E~~~~~~~~~~~~~~~IiD~~g~~~~~---~  186 (260)
                      +...++.|.+++++.+|++||||+++++++++++..+.+++.|+.++++|.++++.+.+.+|+++|+|++|+++++   .
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~   81 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI   81 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhc
Confidence            4567889998887669999999999999999999999999999999999998776566788999999999999887   5


Q ss_pred             CHHHHHHHHHHHhccccccccceEEEcCCcchHHHHHHhhhcccccc-CeEEEccc--hhhhhccCCCCCCCcccCC
Q 024946          187 DLKFLTFLFDVFYYYHPKRLGEVLFVEAPFVFKPFWQLTKPLLKSYA-SLAKFCSV--ETVRKEYFTEATVPDNFRE  260 (260)
Q Consensus       187 ~~~~~k~~~~~~~~~yP~rl~~i~ivN~p~~~~~~~~~vkpfL~~~t-~ki~~~~~--~~ll~~~i~~~~LP~~yGg  260 (260)
                      +++.++.+++++|++||+|++++||||+|++|+++|+++||||++++ +||.++++  +++ ..++++++||++|||
T Consensus        82 ~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~fl~~k~~~Ki~~~~~~~~~~-~~~~~~~~LP~~~GG  157 (185)
T d1r5la2          82 TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKERIHMHGNNYKQS-LLQHFPDILPLEYGG  157 (185)
T ss_dssp             CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGGSCHHHHTTEEECCSSCHHH-HHHHSTTTSCGGGTC
T ss_pred             cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHhccHHHHhheEEeccchHHH-HhhcCHHhCCHhcCC
Confidence            78999999999999999999999999999999999999999999998 99999865  344 467789999999999
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2di0a1 a.5.2.4 (A:8-70) Activating signal cointegrator 1 complex subunit 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure