Citrus Sinensis ID: 024956

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTGV
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccccHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHHHHcccccccEEEEEccHHHHHHHHHcccEEEEEccccccccccccccEEcccccccccccccccccccccccccccccEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEcccEEEccHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHcHHHHccEEcccccccccccccHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHccEEEEEccccccHHHHHHHcEHHHcHHHccHHHccccccHHHHccccccccEEEEEEcEccccccHHHHcccccc
Coil and Loop (DISEMBL)
MAQPLKKLMSCVILdldgtllntdgMFSEVLKTFLVKYgkewdgrekhkivgktpLEEAAIIVEdyglpcakhefVNEVYSMFSDHLCKVKALPGANRLIKHLschgvpmalasnshratieskisyqhgwnesFSVIVgsdevrtgkpspdIFLEAAKrlnmepssslviedsvIGVVAGKAAGMevvavpslpkqthrytAADEVINSLLdlrpekwglppfqdwiegtlpsepwyiggpvvkglgrgskvlgiptgv
Flexible Loop (DISEMBL)
MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVkygkewdgrekhkivgktplEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRlnmepssslviEDSVIGVVAGKAAGMEVVAvpslpkqthrytAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGpvvkglgrgskvlgiptgv
Low Complexity Region (SEG)
MAQPLKKLMSCVIldldgtllntdgMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTGV
Disordered region (IsUnstruct)
*******LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD**********IFL************SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVL******
Disordered Region (DISOPRED)
*****KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTG*
Disordered Region (DISEMBL)
MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTGV
Disordered Region (DISPRO)
****LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPTGV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q08623	228	Pseudouridine-5'-monophos	yes	no	0.823	0.938	0.399	2e-34
Q9D5U5	234	Pseudouridine-5'-monophos	yes	no	0.826	0.918	0.388	2e-32
Q94529	231	Probable pseudouridine-5'	no	no	0.838	0.943	0.373	1e-30
O14165	249	Uncharacterized protein C	yes	no	0.826	0.863	0.284	3e-19
O59760	236	Putative uncharacterized	no	no	0.757	0.834	0.299	9e-17
Q86ZR7	236	Putative uncharacterized	yes	no	0.834	0.919	0.3	5e-16
O33513	227	Protein CbbY OS=Rhodobact	no	no	0.738	0.845	0.283	8e-16
Q9X0Y1	216	Phosphorylated carbohydra	yes	no	0.676	0.814	0.301	1e-15
P77475	188	Fructose-1-phosphate phos	N/A	no	0.665	0.920	0.318	2e-15
P54607	220	Uncharacterized protein Y	yes	no	0.776	0.918	0.287	2e-14

>sp|Q08623|HDHD1_HUMAN Pseudouridine-5'-monophosphatase OS=Homo sapiens GN=HDHD1 PE=1 SV=3

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/218 (39%), Positives = 125/218 (57%), Gaps = 4/218 (1%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           +I D+DG LL+T+ ++S V +    +Y K++    K  ++GK  LE A II++   LP +
Sbjct: 11  LIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMS 70

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
           K E V E  +   +       +PGA +LI HL  HG+P ALA++S  A+ + K S    +
Sbjct: 71  KEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEF 130

Query: 132 NESFS-VIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS--SSLVIEDSVIGVVAGKAAGME 187
              FS +++G D EV+ GKP PDIFL  AKR +  P+    LV ED+  GV A  AAGM+
Sbjct: 131 FSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQ 190

Query: 188 VVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 225
           VV VP         T A  V+NSL D +PE +GLP ++
Sbjct: 191 VVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 228

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation. Pseudouridine is then excreted intact in urine.
Homo sapiens (taxid: 9606)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: nEC: 6

>sp|Q9D5U5|HDHD1_MOUSE Pseudouridine-5'-monophosphatase OS=Mus musculus GN=Hdhd1 PE=2 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/219 (38%), Positives = 120/219 (54%), Gaps = 4/219 (1%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           +I DLDG +LNT+ ++++V +    +YGK+++   K  ++GK  LE A  IVE   LP +
Sbjct: 16  LIFDLDGLILNTEDLYTDVFEEICNRYGKKYNWDVKSLVMGKKALETAQTIVEFLNLPIS 75

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
           K E + E        L     +PGA  LI HL  H +P ALA++S   T ++K S   G+
Sbjct: 76  KEELLKESQEKLQMVLHTAGFMPGAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGF 135

Query: 132 NESF-SVIVGSD-EVRTGKPSPDIFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAGME 187
              F  +++G D EV+ GKP  DIFL  AKR +   +P   LV EDS  GV A    GM+
Sbjct: 136 FGLFHHIVLGDDPEVKNGKPGMDIFLTCAKRFSPPPDPKDCLVFEDSPNGVEAAIHCGMQ 195

Query: 188 VVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQD 226
           VV VP           A  V++SL D +PE +GLP F +
Sbjct: 196 VVMVPHENLSADLTRKATLVLSSLHDFKPELFGLPAFTE 234

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation. Pseudouridine is then excreted intact in urine.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: n

EC: 6

>sp|Q94529|GS1_DROME Probable pseudouridine-5'-monophosphatase OS=Drosophila melanogaster GN=Gs1l PE=2 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 12/230 (5%)

Query: 5   LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE 64
           L+K+  CV  D+DG LL+T+ +++   +  L  YGK +    K +++G      A  +VE
Sbjct: 6   LRKVTHCV-FDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQVMGLQTEPLARFMVE 64

Query: 65  DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 124
            Y LP +  E+  +  +     +   + +PGA RL++HL  + VP  LA++S    +E K
Sbjct: 65  HYELPMSWEEYARQQRANTEILMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELK 124

Query: 125 ISYQHGWNESFSV----IVGSD--EVRTGKPSPDIFLEAAKRLNM--EPSSSLVIEDSVI 176
            + QH   E FS+    + GS   EV  GKP+PDIFL AA R  +  +PS  LV EDS  
Sbjct: 125 TA-QH--RELFSLFNHKVCGSSDKEVVNGKPAPDIFLVAAGRFGVPPKPSDCLVFEDSPN 181

Query: 177 GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQD 226
           GV A  +AGM+VV VP       + + A +V+ SL D +PE++GLP F D
Sbjct: 182 GVTAANSAGMQVVMVPDPRLSQEKTSHATQVLASLADFKPEQFGLPAFTD 231

Dephosphorylates pseudouridine 5'-phosphate, a potential intermediate in rRNA degradation.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: n

EC: 6

>sp|O14165|YDX1_SCHPO Uncharacterized protein C4C5.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC4C5.01 PE=3 SV=2

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 17/232 (7%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEA 59
           MA    K M+C + D+DG L++++ ++++     L +YGK+      K +++G+     A
Sbjct: 1   MAAKHVKYMAC-LFDMDGLLVDSETIYTKTTNLILDRYGKDPLPISVKAQMMGRPGSAAA 59

Query: 60  AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA 119
            ++++   +P    +FV+E   + +     +K +PGA  LI +LS HG+ + LA++S+ A
Sbjct: 60  KVVIDWSNIPMTPQQFVDEQQVIRAKFWSSLKPMPGAESLINNLSNHGIDIGLATSSNTA 119

Query: 120 TIESKISYQHGWNESF--SVIVGSDEVRT---GKPSPDIFLEAAKRLN----------ME 164
               K ++     E F  +VI G +       GKP PDI+L+    +N          + 
Sbjct: 120 NYNMKTAHLKHIFEKFGKNVITGDNPSIAPGRGKPFPDIWLKVLNLINESRKQRGLKALT 179

Query: 165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216
           PS  +  EDS+ GV + KAAGM V+ VP    +       +E+++S  +  P
Sbjct: 180 PSQCIAFEDSIPGVKSAKAAGMHVIWVPDAAIKNLVGDQLNEIVDSQCETLP 231

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O59760|YJM7_SCHPO Putative uncharacterized hydrolase C1020.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1020.07 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 112/227 (49%), Gaps = 30/227 (13%)

Query: 13  ILDLDGTLLNTDGMFSEVLKTFLVKYGK-EWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           + D+DG L++T+ ++++     L +Y K  +    K K++G+T  E + I ++  G+   
Sbjct: 7   LFDMDGLLVDTESIYTKSTNIILKRYNKGPFSMEVKAKMMGRTSKEASRIFLDWSGIDLT 66

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
             E++       ++     K LPG   L+  L    +P+ALA++S     E K ++    
Sbjct: 67  CEEYIALQRETQAELWRHTKPLPGVMNLLSKLKSLNIPIALATSSDTHNFEKKSAHLSHL 126

Query: 132 NESF--SVIVGSDE---VRTGKPSPDIFLEAAKRLN----------MEPSSSLVIEDSVI 176
            + F  ++I G D    V  GKP PDI+  A K +N          + P + LV EDS+ 
Sbjct: 127 FDHFDGNIITGDDPRLPVGRGKPHPDIWFIALKMINDKRKAQGQAEILPENCLVFEDSIT 186

Query: 177 GVVAGKAAGMEVVAVPSL---------PKQTHRYTAADEVINSLLDL 214
           GV +G+AAGM+VV VP +         P+Q     AAD+ I  +L L
Sbjct: 187 GVQSGRAAGMKVVWVPDVNILPFFSLSPEQ-----AADKHITKVLSL 228

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q86ZR7|YKD3A_YEAST Putative uncharacterized hydrolase YKL033W-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL033W-A PE=1 SV=2

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 112/240 (46%), Gaps = 23/240 (9%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK---EWDGREKHKIVGKTPLE 57
           M  P+   +   + D+DG L+NT+ +++E L   L ++GK    WD   K K+ G    E
Sbjct: 1   MTHPVA--VKACLFDMDGLLINTEDIYTETLNETLAEFGKGPLTWD--VKIKLQGLPGPE 56

Query: 58  EAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSH 117
               ++E Y LP    E+     ++ S      + LPGA  L+K+L    +P+AL ++S+
Sbjct: 57  AGKRVIEHYKLPITLDEYDERNVALQSLKWGTCEFLPGALNLLKYLKLKNIPIALCTSSN 116

Query: 118 RATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFLEAAKRLN------MEPSS 167
           +     K S+     + F  IV  D+ R     GKP PDI+    K LN      ++P  
Sbjct: 117 KTKFRGKTSHLEEGFDLFDTIVTGDDPRIAKGRGKPFPDIWQLGLKELNEKFHTDIKPDE 176

Query: 168 SLVIEDSVIGVVAGKAAGMEVVAVPS------LPKQTHRYTAADEVINSLLDLRPEKWGL 221
            +V ED + GV + KA G  V+ VP       L           E+++SL  L   K+GL
Sbjct: 177 CIVFEDGIPGVKSAKAFGAHVIWVPHPEAHAVLGDTEALLAGKGELLSSLEKLEMSKYGL 236

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O33513|CBBY_RHOCA Protein CbbY OS=Rhodobacter capsulatus GN=cbbY PE=3 SV=1

 Score = 84.3 bits (207), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 20/212 (9%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTP--LEEAAIIVED 65
           +  +I D+DGTL  T+ +  +         G +W   +E ++ + +T    E  A   E+
Sbjct: 3   LKALIFDVDGTLAETEEVHRQAFNETFAAQGLDWYWSKEDYRTLLRTTGGKERMAKHREN 62

Query: 66  YG----------LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASN 115
            G          L  AK +   E+ +       +V  LPG   LI      G+ +A+A+ 
Sbjct: 63  LGSGPSDAKIADLHKAKTQRYVEIIAS-----GQVGLLPGVAELIDRAKASGLRLAIATT 117

Query: 116 SHRATIESKI--SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173
           + RA +++ I  ++     + F VI   DEV   KP+PD++L A + L + P++ L  ED
Sbjct: 118 TTRANVDALIAATFSKPAGDIFEVIAAGDEVAQKKPAPDVYLRALQGLGLPPAACLAFED 177

Query: 174 SVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD 205
           S  G+ + +AAG+ VV  PS   +   ++AAD
Sbjct: 178 SRAGLASARAAGLRVVLTPSEYTRGDDFSAAD 209

Rhodobacter capsulatus (taxid: 1061)

>sp|Q9X0Y1|P1254_THEMA Phosphorylated carbohydrates phosphatase TM_1254 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=TM_1254 PE=1 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 95/186 (51%), Gaps = 10/186 (5%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL 68
           M  VI D+DG L++T+ ++ E  +     YGK +      +I+G    E   I++E   +
Sbjct: 1   MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEI 60

Query: 69  PCAKHEFVNEVYS----MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNS-HRATIES 123
             +   F   V+     +FS+ L   K  PG    ++ +    + +ALA+++  R  +E 
Sbjct: 61  KDSLENFKKRVHEEKKRVFSELL---KENPGVREALEFVKSKRIKLALATSTPQREALER 117

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
               +    + F V+V  D+V+ GKP P+I+L   +RLN+ P   +V EDS  GV A K+
Sbjct: 118 --LRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKS 175

Query: 184 AGMEVV 189
           AG+E +
Sbjct: 176 AGIERI 181

Displays high phosphatase activity toward erythrose 4-phosphate, fructose 6-phosphate, 2-deoxyglucose 6-phosphate, and mannose 6-phosphate. May have a role in the intracellular metabolism of many phosphorylated carbohydrates.

Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) (taxid: 243274)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|P77475|YQAB_ECOLI Fructose-1-phosphate phosphatase YqaB OS=Escherichia coli (strain K12) GN=yqaB PE=1 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 95/185 (51%), Gaps = 12/185 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           +I D+DGT+L+T+    +  +  L  YG ++D +    + G      A  I+E       
Sbjct: 8   LIFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMIALNGSPTWRIAQAIIELNQADLD 67

Query: 72  KHEFVNE----VYSMFSDHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKIS 126
            H    E    V SM  D    V+ LP  + ++K  S HG  PMA+ + S  A  E+ ++
Sbjct: 68  PHALAREKTEAVRSMLLD---SVEPLPLVD-VVK--SWHGRRPMAVGTGSESAIAEALLA 121

Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
           +  G    F  +V +D V+  KP+PD FL  A+R+ ++P+  +V ED+  G+ A +AAGM
Sbjct: 122 HL-GLRHYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPTQCVVFEDADFGIQAARAAGM 180

Query: 187 EVVAV 191
           + V V
Sbjct: 181 DAVDV 185

Catalyzes strongly the dephosphorylation of fructose-1-phosphate (Fru1P) and slightly the dephosphorylation of 6-phosphogluconate (6P-Glu). It has low beta-phosphoglucomutase activity.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|P54607|YHCW_BACSU Uncharacterized protein YhcW OS=Bacillus subtilis (strain 168) GN=yhcW PE=3 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 10/212 (4%)

Query: 8   LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-----WDGREKHKIVGKTPLEEAAII 62
           ++  +I D DG +L+T+    EVL+    ++G       W G+      G  P E    +
Sbjct: 1   MIKALIFDFDGLILDTETHEYEVLQEIFEEHGSVLPLSVW-GKVIGTAAGFRPFE---YL 56

Query: 63  VEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIE 122
            E  G      E        F+  +   KA PG    +      G+ + LAS+S    + 
Sbjct: 57  EEQIGKKLNHEELTQLRRERFAKRMESEKARPGVEAYLNAAKDLGLKIGLASSSDYKWVS 116

Query: 123 SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182
             +  Q G  + F VI  +D+V   KP+P+++L AAK L + P+  L  EDSV G +A K
Sbjct: 117 GHLK-QIGLFDDFEVIQTADDVEEVKPNPELYLLAAKNLGVSPAECLAFEDSVNGSIAAK 175

Query: 183 AAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
            AGM+ V VP+    T  +   D  + S+ ++
Sbjct: 176 RAGMKCVIVPNKVTGTLMFEDYDHRLESMAEM 207

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
255567401	382	riboflavin kinase/fmn adenylyltransferas	0.996	0.678	0.756	1e-112
297804002	380	ATFMN [Arabidopsis lyrata subsp. lyrata]	0.996	0.681	0.733	1e-109
356521303	377	PREDICTED: pseudouridine-5'-monophosphat	0.976	0.673	0.751	1e-109
359495472	388	PREDICTED: pseudouridine-5'-monophosphat	0.992	0.664	0.736	1e-109
224066785	381	predicted protein [Populus trichocarpa]	0.992	0.677	0.745	1e-108
359495493	388	PREDICTED: pseudouridine-5'-monophosphat	0.992	0.664	0.728	1e-108
42567011	379	riboflavin kinase [Arabidopsis thaliana]	0.996	0.683	0.725	1e-107
224082356	382	predicted protein [Populus trichocarpa]	0.996	0.678	0.733	1e-107
357475891	377	Riboflavin kinase [Medicago truncatula]	0.976	0.673	0.740	1e-106
388522333	377	unknown [Medicago truncatula]	0.976	0.673	0.736	1e-105

>gi|255567401|ref|XP_002524680.1| riboflavin kinase/fmn adenylyltransferase, putative [Ricinus communis] gi|223536041|gb|EEF37699.1| riboflavin kinase/fmn adenylyltransferase, putative [Ricinus communis]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 196/259 (75%), Positives = 221/259 (85%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           MA PLKK +SCVILDLDGTLLNTDG+ S++LK FLVKYGK+WDGRE ++IVGKTP E AA
Sbjct: 3   MANPLKKFVSCVILDLDGTLLNTDGIVSDILKVFLVKYGKQWDGREGNRIVGKTPFEAAA 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            IVEDY LPC   EF+ E+  MFSD  CK+K LPGANRLIKH   H VPMALASNS RA 
Sbjct: 63  TIVEDYKLPCPTEEFIAEITPMFSDQWCKIKPLPGANRLIKHFIGHNVPMALASNSPRAN 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IE+KIS   GW ESFS+I+G DEV+ GKPSP+IFLEAA+RLN+EPSS LVIEDS+ GV+ 
Sbjct: 123 IEAKISCHEGWKESFSIIIGGDEVKAGKPSPEIFLEAARRLNIEPSSCLVIEDSLPGVMG 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAAGMEVVAVPS+PKQ+H YTAADEVINSLLDL+PEKWGLP F+DW+EGTLP EPW+IG
Sbjct: 183 GKAAGMEVVAVPSIPKQSHLYTAADEVINSLLDLQPEKWGLPAFEDWVEGTLPVEPWHIG 242

Query: 241 GPVVKGLGRGSKVLGIPTG 259
           GPVVKG GRGSKVLGIPT 
Sbjct: 243 GPVVKGFGRGSKVLGIPTA 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804002|ref|XP_002869885.1| ATFMN [Arabidopsis lyrata subsp. lyrata] gi|297315721|gb|EFH46144.1| ATFMN [Arabidopsis lyrata subsp. lyrata]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/259 (73%), Positives = 218/259 (84%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           M+  LKKL SCV++DLDGTL+NTDG+  ++L+ +L KYGK+WDGRE  KIVG+TPLE A 
Sbjct: 3   MSNSLKKLTSCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGQTPLEAAT 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            IVEDYGLPC   EF +E Y +FS  + K+K+LPGANRLI+HL CHGVP+ALASNS RA 
Sbjct: 63  TIVEDYGLPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRAN 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IESKIS+  GW E FSVIVGSDEV  GKPSPDIFLEAAKRLN +P+  LVIEDSV GV+A
Sbjct: 123 IESKISHHEGWKECFSVIVGSDEVSKGKPSPDIFLEAAKRLNKDPADCLVIEDSVPGVMA 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAAG  V+AVPSLPKQTH YT+ADEVINSLLD+RPEKWGLPPFQDWIE TLP +PW+IG
Sbjct: 183 GKAAGTNVIAVPSLPKQTHLYTSADEVINSLLDIRPEKWGLPPFQDWIENTLPIDPWHIG 242

Query: 241 GPVVKGLGRGSKVLGIPTG 259
           GPV+KG GRGSKVLGIPT 
Sbjct: 243 GPVIKGFGRGSKVLGIPTA 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521303|ref|XP_003529296.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/254 (75%), Positives = 213/254 (83%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           KKL+ CVILDLDGTLLNTDG+   VLK  L KYGKEWDGRE  KI+G TP E AA +V+D
Sbjct: 5   KKLIRCVILDLDGTLLNTDGIVGNVLKVMLGKYGKEWDGREAQKIIGTTPFEAAAAVVQD 64

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
           Y LPC+  EF++E+  +FSD  C +KALPGANRL+KHL  HGVPMALASNS R +IE+KI
Sbjct: 65  YQLPCSAIEFLSEISPLFSDQWCNIKALPGANRLVKHLKSHGVPMALASNSPRESIEAKI 124

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
           SY  GW  SFSVI+G DEVRTGKPSP+IFLEAA+RLNMEPSS LVIEDS+ GV AGK A 
Sbjct: 125 SYHDGWKNSFSVIIGGDEVRTGKPSPEIFLEAARRLNMEPSSCLVIEDSLPGVTAGKTAE 184

Query: 186 MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK 245
           MEVV VPSLPKQ+H YTAADEVINSLLDLR EKWGLPPF+DW+EGTLP +PWYIGGPVVK
Sbjct: 185 MEVVVVPSLPKQSHLYTAADEVINSLLDLRLEKWGLPPFEDWVEGTLPVDPWYIGGPVVK 244

Query: 246 GLGRGSKVLGIPTG 259
           G GRGSKVLGIPT 
Sbjct: 245 GFGRGSKVLGIPTA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495472|ref|XP_003634998.1| PREDICTED: pseudouridine-5'-monophosphatase-like [Vitis vinifera] gi|302144187|emb|CBI23314.3| unnamed protein product [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/258 (73%), Positives = 222/258 (86%)

Query: 2   AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI 61
           A+PLKKL+S VILDLDGTLLNTDG+ SEVLK FLVKY K+W+G+  HK++GKTP E AA+
Sbjct: 4   AKPLKKLVSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNGKVAHKLIGKTPFEAAAV 63

Query: 62  IVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATI 121
           IVEDYGLPC   E ++E+  MFS+  C +KALPGANRLIKHL  H VPMALASNS RA+I
Sbjct: 64  IVEDYGLPCTTEELMSEITPMFSNQWCNIKALPGANRLIKHLHGHRVPMALASNSPRASI 123

Query: 122 ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181
           ESKIS   GW ESFSVI+G DEVR GKPSP+IFLEA+KRL+++PS+ LVIEDS+ GV+AG
Sbjct: 124 ESKISCHQGWKESFSVIIGGDEVRMGKPSPEIFLEASKRLSVKPSNCLVIEDSLPGVMAG 183

Query: 182 KAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGG 241
           KAAGMEVVAVPS+PKQ+H + +ADEVINSLLDLRPE+WGLP FQDW+E TLP EPWYIGG
Sbjct: 184 KAAGMEVVAVPSIPKQSHIFNSADEVINSLLDLRPEQWGLPSFQDWVEDTLPVEPWYIGG 243

Query: 242 PVVKGLGRGSKVLGIPTG 259
           PV+KG GRGSKVLG+PT 
Sbjct: 244 PVIKGFGRGSKVLGVPTA 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066785|ref|XP_002302214.1| predicted protein [Populus trichocarpa] gi|222843940|gb|EEE81487.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/259 (74%), Positives = 220/259 (84%), Gaps = 1/259 (0%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           +A+PLKKL+S VILDLDGTLL+TDG+ S+VLK F+VKYGK+WDGRE  KIVGKTPLE AA
Sbjct: 3   IAKPLKKLVSAVILDLDGTLLHTDGIVSDVLKVFVVKYGKQWDGRETQKIVGKTPLEAAA 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            +VEDY LPC+  +F+ ++  +  D  C +KALPGANRLIKHLS H VPMALASNS RA 
Sbjct: 63  AVVEDYELPCSTDDFLTQITPLLYDQWCSIKALPGANRLIKHLSSHNVPMALASNSPRAN 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IESKISY  GW  SFSVI+  DEVRTGKPSP+IFLEAAKRLN++PSS LVIEDS+ GV  
Sbjct: 123 IESKISYHQGWKGSFSVIIAGDEVRTGKPSPEIFLEAAKRLNVKPSSCLVIEDSLPGVTG 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAAGMEVVAVPS+PK +H YT ADEVINSLLDL+PE WGLPPF+DW+EGTLP EPW+IG
Sbjct: 183 GKAAGMEVVAVPSIPK-SHLYTEADEVINSLLDLQPELWGLPPFEDWMEGTLPIEPWHIG 241

Query: 241 GPVVKGLGRGSKVLGIPTG 259
           GPVVKG GRGSKVLGIPT 
Sbjct: 242 GPVVKGFGRGSKVLGIPTA 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495493|ref|XP_002271233.2| PREDICTED: pseudouridine-5'-monophosphatase [Vitis vinifera] gi|302144186|emb|CBI23313.3| unnamed protein product [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 188/258 (72%), Positives = 220/258 (85%)

Query: 2   AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI 61
           A+PLKKL+S VILDLDGTLLNTDG+ SEVLK FLVKY K+W+G+  HK++GKTP E AA+
Sbjct: 4   AKPLKKLVSGVILDLDGTLLNTDGIVSEVLKVFLVKYEKQWNGKVAHKLIGKTPFEAAAV 63

Query: 62  IVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATI 121
           IVEDYGLPC   E ++E+  MFS+  C +KALPGANRLIKHL  HGVP+ALASNS RA+I
Sbjct: 64  IVEDYGLPCTTEELMSEITPMFSNQWCNIKALPGANRLIKHLHGHGVPIALASNSPRASI 123

Query: 122 ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181
           ESKIS   GW ESFSVI+G DEVR GKPSP+IF EA+KRL+++PS+ LVIEDS+ GV+AG
Sbjct: 124 ESKISCHQGWKESFSVIIGGDEVRMGKPSPEIFFEASKRLSVKPSNCLVIEDSLPGVMAG 183

Query: 182 KAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGG 241
           KAAGMEVVAVPS+P Q+H + +ADEVINSLLDLRPE WGLP FQDW+E TLP EPWYIGG
Sbjct: 184 KAAGMEVVAVPSIPNQSHIFNSADEVINSLLDLRPELWGLPSFQDWVEDTLPVEPWYIGG 243

Query: 242 PVVKGLGRGSKVLGIPTG 259
           PV+KG GRGSKVLG+PT 
Sbjct: 244 PVIKGFGRGSKVLGVPTA 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567011|ref|NP_193878.2| riboflavin kinase [Arabidopsis thaliana] gi|30102526|gb|AAP21181.1| At4g21470 [Arabidopsis thaliana] gi|62752481|gb|AAX98488.1| riboflavin kinase/FMN hydrolase [Arabidopsis thaliana] gi|110742726|dbj|BAE99274.1| hypothetical protein [Arabidopsis thaliana] gi|332659057|gb|AEE84457.1| riboflavin kinase [Arabidopsis thaliana]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 188/259 (72%), Positives = 216/259 (83%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           M+  LKKL SCV++DLDGTL+NTDG+  ++L+ +L KYGK+WDGRE  KIVGKTP+E A 
Sbjct: 3   MSNSLKKLSSCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAAT 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            IVEDY LPC   EF +E Y +FS  + K+K+LPGANRLI+HL CHGVP+ALASNS RA 
Sbjct: 63  TIVEDYELPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRAN 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IESKISY  GW E FSVIVGSDEV  GKPSPDIFLEAAKRL  +P+  LVIEDSV GV+A
Sbjct: 123 IESKISYHEGWKECFSVIVGSDEVSKGKPSPDIFLEAAKRLKKDPADCLVIEDSVPGVMA 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAAG +V+AVPSLPKQTH YT+ADEVINSLLD+R EKWGLPPFQDWIE TLP +PW+IG
Sbjct: 183 GKAAGTKVIAVPSLPKQTHLYTSADEVINSLLDIRLEKWGLPPFQDWIENTLPIDPWHIG 242

Query: 241 GPVVKGLGRGSKVLGIPTG 259
           GPV+KG GRGSKVLGIPT 
Sbjct: 243 GPVIKGFGRGSKVLGIPTA 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082356|ref|XP_002306660.1| predicted protein [Populus trichocarpa] gi|222856109|gb|EEE93656.1| predicted protein [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/259 (73%), Positives = 216/259 (83%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           +A+PLKK ++ VILDLDGTL++TDG+  +VLK  L+KYGK+WDGRE  KIVGKTPLEEAA
Sbjct: 3   IAKPLKKAVAAVILDLDGTLIHTDGILGDVLKALLLKYGKQWDGREAQKIVGKTPLEEAA 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
           I+V DY LPC+  EFV ++  +  D  C +KALPGANRLIKHLS H VP+ALASNS RA 
Sbjct: 63  IVVGDYELPCSIDEFVTQITPLLYDQFCNIKALPGANRLIKHLSGHNVPLALASNSPRAY 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IESKISYQ GW ESFSVI+  DEVR GKPSP+IFLEAAKRLN+EPS  LVIEDS+ GV  
Sbjct: 123 IESKISYQQGWKESFSVIIAGDEVRAGKPSPEIFLEAAKRLNIEPSRCLVIEDSLPGVTG 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAA MEVVAVPS+PKQTH Y AADEVI+SLLDL+PE WGLPPF DWI+GTLP E W+IG
Sbjct: 183 GKAADMEVVAVPSIPKQTHLYIAADEVISSLLDLQPELWGLPPFDDWIDGTLPLEIWHIG 242

Query: 241 GPVVKGLGRGSKVLGIPTG 259
           GPVVKG GRGSKVLGIPT 
Sbjct: 243 GPVVKGFGRGSKVLGIPTA 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475891|ref|XP_003608231.1| Riboflavin kinase [Medicago truncatula] gi|217072412|gb|ACJ84566.1| unknown [Medicago truncatula] gi|355509286|gb|AES90428.1| Riboflavin kinase [Medicago truncatula] gi|388509552|gb|AFK42842.1| unknown [Medicago truncatula]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/254 (74%), Positives = 214/254 (84%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           ++L+ CVILDLDGTLLNTDG+   VLK  L KYGKEWDGRE  KIVGKTPLE A+ +VED
Sbjct: 5   RRLIKCVILDLDGTLLNTDGIVCNVLKVSLGKYGKEWDGRETLKIVGKTPLEAASAVVED 64

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
           YGLPC+  EFV+E+   FSD  C +KALPGANRLIKHL  +GVPMALASNS R +I++KI
Sbjct: 65  YGLPCSPIEFVSELSPQFSDQWCNIKALPGANRLIKHLKSNGVPMALASNSPRESIDAKI 124

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
           S+  GW +SFSVI+G DEVRTGKPSPDIF EAA+RL +EPSS LVIEDS+ GV AGKAA 
Sbjct: 125 SFHDGWKDSFSVIIGGDEVRTGKPSPDIFFEAARRLKIEPSSCLVIEDSLPGVTAGKAAE 184

Query: 186 MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK 245
           MEVVAVPSLPKQ+H +TAADEVINSLLDL+ EKWGLPPF DW+E TLP +PWYIGGPV+K
Sbjct: 185 MEVVAVPSLPKQSHLFTAADEVINSLLDLQLEKWGLPPFADWVERTLPVDPWYIGGPVIK 244

Query: 246 GLGRGSKVLGIPTG 259
           G GRGSKVLGIPT 
Sbjct: 245 GFGRGSKVLGIPTA 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522333|gb|AFK49228.1| unknown [Medicago truncatula]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/254 (73%), Positives = 213/254 (83%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           ++L+ CVILDLDGTLLNTDG+   VLK  L KYGKEWDGRE  KIVGKTPLE A+ +VED
Sbjct: 5   RRLIKCVILDLDGTLLNTDGIVCNVLKVSLGKYGKEWDGRETLKIVGKTPLEAASAVVED 64

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
           YGLPC+  EFV+E+   FSD  C +KALPGANRLIKHL  +GVPMALASNS R +I++KI
Sbjct: 65  YGLPCSPIEFVSELSPQFSDQWCNIKALPGANRLIKHLKSNGVPMALASNSPRESIDAKI 124

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
           S+  GW +SFSV+ G DEVRTGKPSPDIF EAA+RL +EPSS LVIEDS+ GV AGKAA 
Sbjct: 125 SFHDGWKDSFSVLFGGDEVRTGKPSPDIFFEAARRLKIEPSSCLVIEDSLPGVTAGKAAE 184

Query: 186 MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK 245
           MEVVAVPSLPKQ+H +TAADEVINSLLDL+ EKWGLPPF DW+E TLP +PWYIGGPV+K
Sbjct: 185 MEVVAVPSLPKQSHLFTAADEVINSLLDLQLEKWGLPPFADWVERTLPVDPWYIGGPVIK 244

Query: 246 GLGRGSKVLGIPTG 259
           G GRGSKVLGIPT 
Sbjct: 245 GFGRGSKVLGIPTA 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2119647	379	FMN/FHY "riboflavin kinase/FMN	0.992	0.680	0.689	2.3e-94
TAIR|locus:2174567	240	GS1 [Arabidopsis thaliana (tax	0.757	0.820	0.395	1.3e-31
UNIPROTKB|E2R8L4	233	HDHD1 "Uncharacterized protein	0.765	0.854	0.384	2.3e-30
TAIR|locus:2117512	298	GPP1 "glycerol-3-phosphatase 1	0.757	0.661	0.376	3e-30
UNIPROTKB|Q08623	228	HDHD1 "Pseudouridine-5'-monoph	0.769	0.877	0.392	7.9e-30
UNIPROTKB|Q2KJ86	231	HDHD1A "Haloacid dehalogenase-	0.765	0.861	0.369	1.7e-27
MGI|MGI:1914615	234	Hdhd1a "haloacid dehalogenase-	0.773	0.858	0.375	1.7e-27
FB|FBgn0019982	231	Gs1l "GS1-like" [Drosophila me	0.834	0.939	0.354	1.2e-26
UNIPROTKB|E1BRK1	214	HDHD1 "Uncharacterized protein	0.765	0.929	0.344	3.2e-26
RGD|1305101	234	Hdhd1 "haloacid dehalogenase-l	0.773	0.858	0.356	4e-26

TAIR|locus:2119647 FMN/FHY "riboflavin kinase/FMN hydrolase" [Arabidopsis thaliana (taxid:3702)]

 Score = 939 (335.6 bits), Expect = 2.3e-94, P = 2.3e-94
 Identities = 178/258 (68%), Positives = 204/258 (79%)

Query:     1 MAQPLKKLMSCVIXXXXXXXXXXXXMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
             M+  LKKL SCV+            +  ++L+ +L KYGK+WDGRE  KIVGKTP+E A 
Sbjct:     3 MSNSLKKLSSCVLIDLDGTLINTDGVVGDILRKYLCKYGKQWDGRESLKIVGKTPVEAAT 62

Query:    61 IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
              IVEDY LPC   EF +E Y +FS  + K+K+LPGANRLI+HL CHGVP+ALASNS RA 
Sbjct:    63 TIVEDYELPCKVDEFNSEFYPLFSAQMDKIKSLPGANRLIRHLKCHGVPVALASNSSRAN 122

Query:   121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
             IESKISY  GW E FSVIVGSDEV  GKPSPDIFLEAAKRL  +P+  LVIEDSV GV+A
Sbjct:   123 IESKISYHEGWKECFSVIVGSDEVSKGKPSPDIFLEAAKRLKKDPADCLVIEDSVPGVMA 182

Query:   181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
             GKAAG +V+AVPSLPKQTH YT+ADEVINSLLD+R EKWGLPPFQDWIE TLP +PW+IG
Sbjct:   183 GKAAGTKVIAVPSLPKQTHLYTSADEVINSLLDIRLEKWGLPPFQDWIENTLPIDPWHIG 242

Query:   241 GPVVKGLGRGSKVLGIPT 258
             GPV+KG GRGSKVLGIPT
Sbjct:   243 GPVIKGFGRGSKVLGIPT 260

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008531 "riboflavin kinase activity" evidence=IEA;ISS;IDA

GO:0009231 "riboflavin biosynthetic process" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA

GO:0003919 "FMN adenylyltransferase activity" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2174567 GS1 [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 83/210 (39%), Positives = 122/210 (58%)

Query:    27 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP--CAKHEFVNEVYSMFS 84
             ++EV +  L ++ K++D   K K++G+  +E A I VE+ G+    +  +F+ E  SM  
Sbjct:    32 YTEVQEIILARFNKKFDWSLKAKMMGRKAIEAARIFVEESGISDSLSAEDFLVERESMLQ 91

Query:    85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVG 140
             D     + +PGA+RLIKHL    +P+ +A+ +H    + K + +H   E FS    V+ G
Sbjct:    92 DLFPTSELMPGASRLIKHLHVKNIPICIATGTHTRHYDLK-TQRH--RELFSLMHHVVRG 148

Query:   141 SD-EVRTGKPSPDIFLEAAKRLNMEPSSS---LVIEDSVIGVVAGKAAGMEVVAVPSLPK 196
              D EV+ GKP+PD FL AA+R    P  S   LV ED+  GV+A K AGM VV VP    
Sbjct:   149 DDPEVKQGKPAPDGFLAAARRFKDGPVDSQKVLVFEDAPSGVLAAKNAGMNVVMVPDPRL 208

Query:   197 QTHRYTAADEVINSLLDLRPEKWGLPPFQD 226
                    AD++I SL+D +PE+WGLPPF+D
Sbjct:   209 DISHQDVADQIITSLVDFKPEEWGLPPFED 238

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

UNIPROTKB|E2R8L4 HDHD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 78/203 (38%), Positives = 113/203 (55%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             ++S V +    +YGK++    K  ++GK   E A I+++   LP +K E V+E      +
Sbjct:    30 LYSVVFQEICDRYGKKYSWDVKSLVMGKKATEAAQIVIDVLQLPMSKEELVDESQMKLKE 89

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
                    +PG  +LI HL  HGVP+A+A++S   + E K S    +   F  +++G D E
Sbjct:    90 LFPTAALMPGVEKLIHHLREHGVPLAVATSSSLLSFEMKTSRHKEFFSLFDHIVLGDDPE 149

Query:   144 VRTGKPSPDIFLEAAKRLNMEP--SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             V+ GKP PDIFL  AKR +  P     LV ED+  GV A  AAGM+VV VP    Q H  
Sbjct:   150 VKNGKPDPDIFLACAKRFSPPPPMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLQRHLT 209

Query:   202 TAADEVINSLLDLRPEKWGLPPF 224
             + A  V++SL D +PE +GLPP+
Sbjct:   210 SKATVVLDSLQDFQPELFGLPPY 232

GO:0016787 "hydrolase activity" evidence=IEA

TAIR|locus:2117512 GPP1 "glycerol-3-phosphatase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 79/210 (37%), Positives = 120/210 (57%)

Query:    27 FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP--CAKHEFVNEVYSMFS 84
             ++EV +  L +Y K +D   K K++G+  +E A + V++ G+    +  +F+ E  SM  
Sbjct:    89 YTEVQEKILARYNKTFDWSLKAKMMGRKAIEAARLFVDESGISDSLSAEDFIVERESMLQ 148

Query:    85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVG 140
             D       +PGA+RL++HL   G+P+ +A+ +H    + K + +H   E FS    V+ G
Sbjct:   149 DLFPTSDLMPGASRLLRHLHGKGIPICIATGTHTRHFDLK-TQRH--RELFSLMHHVVRG 205

Query:   141 SD-EVRTGKPSPDIFLEAAKRLN---MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196
              D EV+ GKP+PD FL A++R     ++P   LV ED+  GV A K AGM V+ VP    
Sbjct:   206 DDPEVKEGKPAPDGFLAASRRFEDGPVDPRKVLVFEDAPSGVQAAKNAGMNVIMVPDSRL 265

Query:   197 QTHRYTAADEVINSLLDLRPEKWGLPPFQD 226
                    AD+V+ SLLD +PE+WGLP FQD
Sbjct:   266 DKSYCNVADQVLASLLDFKPEEWGLPSFQD 295

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016787 "hydrolase activity" evidence=IEA;ISS

UNIPROTKB|Q08623 HDHD1 "Pseudouridine-5'-monophosphatase" [Homo sapiens (taxid:9606)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 80/204 (39%), Positives = 114/204 (55%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             ++S V +    +Y K++    K  ++GK  LE A II++   LP +K E V E  +   +
Sbjct:    25 LYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKE 84

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
                    +PGA +LI HL  HG+P ALA++S  A+ + K S    +   FS +++G D E
Sbjct:    85 VFPTAALMPGAEKLIIHLRKHGIPFALATSSGSASFDMKTSRHKEFFSLFSHIVLGDDPE 144

Query:   144 VRTGKPSPDIFLEAAKRLNMEPSSS--LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             V+ GKP PDIFL  AKR +  P+    LV ED+  GV A  AAGM+VV VP         
Sbjct:   145 VQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLT 204

Query:   202 TAADEVINSLLDLRPEKWGLPPFQ 225
             T A  V+NSL D +PE +GLP ++
Sbjct:   205 TKATLVLNSLQDFQPELFGLPSYE 228

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016791 "phosphatase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2KJ86 HDHD1A "Haloacid dehalogenase-like hydrolase domain containing 1A" [Bos taurus (taxid:9913)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 75/203 (36%), Positives = 113/203 (55%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             ++S V +    +YGK++    K  ++GK  LE A +I +   LP +  E V    +   +
Sbjct:    28 LYSAVFEDICGRYGKKYSWDVKSLVMGKKALEAAQLIRDTLQLPMSAEELVEVSQAKLKE 87

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS-YQHGWNESFSVIVGSD-E 143
                    +PG  +LI+HL  H VP A+A++S  A+ + K S +Q  +     V++G D E
Sbjct:    88 VFPTAALMPGVEKLIRHLRKHDVPCAVATSSGTASFQLKTSRHQDFFGLFHHVVLGDDPE 147

Query:   144 VRTGKPSPDIFLEAAKRLNMEPSSS--LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             VR+GKP PDIFL  A+R +  P ++  LV ED+  GV A  AAGM+VV VP    +    
Sbjct:   148 VRSGKPEPDIFLTCARRFSPAPPANKCLVFEDAPNGVEAALAAGMQVVMVPDGNLKPDLT 207

Query:   202 TAADEVINSLLDLRPEKWGLPPF 224
             + A  V+ SL D +PE +GLPP+
Sbjct:   208 SKATLVLGSLQDFQPELFGLPPY 230

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:1914615 Hdhd1a "haloacid dehalogenase-like hydrolase domain containing 1A" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 77/205 (37%), Positives = 109/205 (53%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             ++++V +    +YGK+++   K  ++GK  LE A  IVE   LP +K E + E       
Sbjct:    30 LYTDVFEEICNRYGKKYNWDVKSLVMGKKALETAQTIVEFLNLPISKEELLKESQEKLQM 89

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
              L     +PGA  LI HL  H +P ALA++S   T ++K S   G+   F  +++G D E
Sbjct:    90 VLHTAGFMPGAEELIHHLKKHRLPFALATSSETVTFQTKTSRHTGFFGLFHHIVLGDDPE 149

Query:   144 VRTGKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             V+ GKP  DIFL  AKR +   +P   LV EDS  GV A    GM+VV VP         
Sbjct:   150 VKNGKPGMDIFLTCAKRFSPPPDPKDCLVFEDSPNGVEAAIHCGMQVVMVPHENLSADLT 209

Query:   202 TAADEVINSLLDLRPEKWGLPPFQD 226
               A  V++SL D +PE +GLP F +
Sbjct:   210 RKATLVLSSLHDFKPELFGLPAFTE 234

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009117 "nucleotide metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

FB|FBgn0019982 Gs1l "GS1-like" [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 82/231 (35%), Positives = 122/231 (52%)

Query:     5 LKKLMSCVIXXXXXXXXXXXXMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE 64
             L+K+  CV             +++   +  L  YGK +    K +++G      A  +VE
Sbjct:     6 LRKVTHCVFDMDGLLLDTER-LYTVATEMILEPYGKTYPFEIKEQVMGLQTEPLARFMVE 64

Query:    65 DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 124
              Y LP +  E+  +  +     +   + +PGA RL++HL  + VP  LA++S    +E K
Sbjct:    65 HYELPMSWEEYARQQRANTEILMRNAQLMPGAERLLRHLHANKVPFCLATSSGADMVELK 124

Query:   125 ISYQHGWNESFSV----IVGSD--EVRTGKPSPDIFLEAAKRLNM--EPSSSLVIEDSVI 176
              + QH   E FS+    + GS   EV  GKP+PDIFL AA R  +  +PS  LV EDS  
Sbjct:   125 TA-QH--RELFSLFNHKVCGSSDKEVVNGKPAPDIFLVAAGRFGVPPKPSDCLVFEDSPN 181

Query:   177 GVVAGKAAGMEVVAVPSLPKQTHRYTA-ADEVINSLLDLRPEKWGLPPFQD 226
             GV A  +AGM+VV VP  P+ +   T+ A +V+ SL D +PE++GLP F D
Sbjct:   182 GVTAANSAGMQVVMVPD-PRLSQEKTSHATQVLASLADFKPEQFGLPAFTD 231

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042060 "wound healing" evidence=IMP

UNIPROTKB|E1BRK1 HDHD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 70/203 (34%), Positives = 110/203 (54%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             +++ V +    ++GK +    K  ++GK  LE A II +   LP  K E ++E       
Sbjct:    11 LYTLVFEEICGRFGKSYTWDVKSLVMGKKALEGAQIIRDVLDLPITKEELLHESKMKQEK 70

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS-YQHGWNESFSVIVGSD-E 143
                  + +PG N+LI+HL  H +P+A+A++S   T + K S ++  +N    +++G D E
Sbjct:    71 IFHTAELMPGVNKLIQHLHKHNIPIAVATSSAEVTFQMKTSRHKDFFNLFHHIVLGDDPE 130

Query:   144 VRTGKPSPDIFLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             V+ GKP PD FL  AKR +    P   LV EDS +GV    AAGM+VV +P      +  
Sbjct:   131 VKGGKPQPDAFLVCAKRFHPPAPPEKCLVFEDSPLGVKGALAAGMQVVMIPDENLSPNLK 190

Query:   202 TAADEVINSLLDLRPEKWGLPPF 224
               A  ++NS+ D +PE +GLP +
Sbjct:   191 KEATLLLNSMEDFKPELFGLPAY 213

GO:0016787 "hydrolase activity" evidence=IEA

RGD|1305101 Hdhd1 "haloacid dehalogenase-like hydrolase domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 73/205 (35%), Positives = 111/205 (54%)

Query:    26 MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
             ++++V +    +YGK+++   K  ++GK   E   IIV+   LP +K + + E       
Sbjct:    30 LYTDVFQAICSRYGKKYNWDVKSLVMGKKAPETTQIIVDFLKLPISKEQLLEESQERLQK 89

Query:    86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
              L     +PGA  LI HL  + +P ALA++S   + ++K S   G+   F  +++G D E
Sbjct:    90 VLHTAALMPGAEELIHHLRKNRLPFALATSSATLSFQTKTSRYKGFFSLFHHIVLGDDPE 149

Query:   144 VRTGKPSPDIFLEAAKRLNMEPSSS--LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
             V   KP+PDIFL  AKR +  P+    LV EDS  GV A  A GM+VV VP     +   
Sbjct:   150 VINSKPAPDIFLTCAKRFSPPPNPEDCLVFEDSPNGVEAAVACGMQVVMVPHENLSSDLT 209

Query:   202 TAADEVINSLLDLRPEKWGLPPFQD 226
             T A  V++SL + +PE +GLP F +
Sbjct:   210 TKATLVLSSLHEFKPELFGLPAFDE 234

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08623	HDHD1_HUMAN	3, ., 1, ., 3, ., n, 6	0.3990	0.8230	0.9385	yes	no
Q9D5U5	HDHD1_MOUSE	3, ., 1, ., 3, ., n, 6	0.3881	0.8269	0.9188	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
PLN02940	382	PLN02940, PLN02940, riboflavin kinase	1e-166
PLN02811	220	PLN02811, PLN02811, hydrolase	2e-58
COG0637	221	COG0637, COG0637, Predicted phosphatase/phosphohex	5e-40
TIGR02009	185	TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase f	1e-29
TIGR01990	185	TIGR01990, bPGM, beta-phosphoglucomutase	2e-26
COG0546	220	COG0546, Gph, Predicted phosphatases [General func	4e-26
pfam13419	176	pfam13419, HAD_2, Haloacid dehalogenase-like hydro	2e-25
TIGR01509	177	TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase sup	6e-25
COG1011	229	COG1011, COG1011, Predicted hydrolase (HAD superfa	7e-20
PRK10725	188	PRK10725, PRK10725, fructose-1-P/6-phosphogluconat	6e-19
pfam00702	187	pfam00702, Hydrolase, haloacid dehalogenase-like h	1e-18
PRK10826	222	PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase;	5e-17
PLN02779	286	PLN02779, PLN02779, haloacid dehalogenase-like hyd	6e-17
PRK13222	226	PRK13222, PRK13222, phosphoglycolate phosphatase;	7e-16
PRK11587	218	PRK11587, PRK11587, putative phosphatase; Provisio	9e-16
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	5e-15
PLN02919	1057	PLN02919, PLN02919, haloacid dehalogenase-like hyd	5e-15
TIGR01454	205	TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic	6e-14
PLN02770	248	PLN02770, PLN02770, haloacid dehalogenase-like hyd	3e-13
TIGR01449	213	TIGR01449, PGP_bact, 2-phosphoglycolate phosphatas	4e-13
PLN02575	381	PLN02575, PLN02575, haloacid dehalogenase-like hyd	2e-12
PLN03243	260	PLN03243, PLN03243, haloacid dehalogenase-like hyd	5e-12
TIGR02253	221	TIGR02253, CTE7, HAD superfamily (subfamily IA) hy	2e-11
pfam13242	74	pfam13242, Hydrolase_like, HAD-hyrolase-like	3e-11
PRK10563	221	PRK10563, PRK10563, 6-phosphogluconate phosphatase	6e-11
TIGR01549	162	TIGR01549, HAD-SF-IA-v1, haloacid dehalogenase sup	8e-11
PRK13288	214	PRK13288, PRK13288, pyrophosphatase PpaX; Provisio	9e-11
PRK13223	272	PRK13223, PRK13223, phosphoglycolate phosphatase;	2e-09
TIGR03351	220	TIGR03351, PhnX-like, phosphonatase-like hydrolase	5e-09
TIGR02252	203	TIGR02252, DREG-2, REG-2-like, HAD superfamily (su	4e-08
PRK13226	229	PRK13226, PRK13226, phosphoglycolate phosphatase;	5e-07
TIGR00213	176	TIGR00213, GmhB_yaeD, D,D-heptose 1,7-bisphosphate	5e-06
TIGR01656	147	TIGR01656, Histidinol-ppas, histidinol-phosphate p	5e-05
TIGR01422	253	TIGR01422, phosphonatase, phosphonoacetaldehyde hy	6e-05
COG0241	181	COG0241, HisB, Histidinol phosphatase and related	1e-04
TIGR01458	257	TIGR01458, HAD-SF-IIA-hyp3, HAD-superfamily subfam	4e-04
PRK13225	273	PRK13225, PRK13225, phosphoglycolate phosphatase;	4e-04
COG0647	269	COG0647, NagD, Predicted sugar phosphatases of the	6e-04
PRK08942	181	PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate p	8e-04
TIGR02254	224	TIGR02254, YjjG/YfnB, HAD superfamily (subfamily I	0.002
TIGR01993	183	TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleoti	0.002
PRK13478	267	PRK13478, PRK13478, phosphonoacetaldehyde hydrolas	0.002

>gnl|CDD|178528 PLN02940, PLN02940, riboflavin kinase

 Score =  465 bits (1198), Expect = e-166
 Identities = 200/258 (77%), Positives = 224/258 (86%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
            A+PLKKL+S VILDLDGTLLNTDG+ S+VLK FLVKYGK+WDGRE  KIVGKTPLE AA
Sbjct: 3   AAKPLKKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAA 62

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            +VEDYGLPC+  EF +E+  + S+  C +KALPGANRLIKHL  HGVPMALASNS RA 
Sbjct: 63  TVVEDYGLPCSTDEFNSEITPLLSEQWCNIKALPGANRLIKHLKSHGVPMALASNSPRAN 122

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           IE+KIS   GW ESFSVIVG DEV  GKPSPDIFLEAAKRLN+EPS+ LVIEDS+ GV+A
Sbjct: 123 IEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEPSNCLVIEDSLPGVMA 182

Query: 181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIG 240
           GKAAGMEV+AVPS+PKQTH Y++ADEVINSLLDL+PEKWGLPPF DWIEGTLP EPW+IG
Sbjct: 183 GKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWHIG 242

Query: 241 GPVVKGLGRGSKVLGIPT 258
           GPV+KG GRGSKVLGIPT
Sbjct: 243 GPVIKGFGRGSKVLGIPT 260

Length = 382

>gnl|CDD|178407 PLN02811, PLN02811, hydrolase

 Score =  184 bits (470), Expect = 2e-58
 Identities = 96/223 (43%), Positives = 135/223 (60%), Gaps = 17/223 (7%)

Query: 16  LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP--CAKH 73
           +DG LL+T+  ++EV +  L +YGK +D   K K++GK  +E A I VE+ GL    +  
Sbjct: 1   MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPE 60

Query: 74  EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE 133
           +F+ E  +M  D       +PGA RL++HL   G+P+A+A+ SH+   + K   +HG  E
Sbjct: 61  DFLVEREAMLQDLFPTSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQ-RHG--E 117

Query: 134 SFS----VIVGSD-EVRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAG 185
            FS    V+ G D EV+ GKP+PDIFL AA+R     ++P   LV ED+  GV A K AG
Sbjct: 118 LFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAPSGVEAAKNAG 177

Query: 186 MEVVAVP--SLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQD 226
           M VV VP   L K   +   AD+V++SLLD +PE+WGLPPF D
Sbjct: 178 MSVVMVPDPRLDKSYCK--GADQVLSSLLDFKPEEWGLPPFPD 218

Length = 220

>gnl|CDD|223710 COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]

 Score =  137 bits (347), Expect = 5e-40
 Identities = 67/209 (32%), Positives = 110/209 (52%), Gaps = 3/209 (1%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDY-GLP 69
            VI D+DGTL++++ + +      L +YG E    E  ++ G        ++ +   G  
Sbjct: 4   AVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGED 63

Query: 70  CAKHEFV-NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
            A    +   +Y   +  L  +K +PG   L++ L   G+P+A+AS+S R   E ++  +
Sbjct: 64  PADLAELERLLYEAEALELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAE-RVLAR 122

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
            G  + F VIV +D+V  GKP+PDI+L AA+RL ++P   +V+EDS  G+ A KAAGM V
Sbjct: 123 LGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDPEECVVVEDSPAGIQAAKAAGMRV 182

Query: 189 VAVPSLPKQTHRYTAADEVINSLLDLRPE 217
           V VP+   + H         +++L    E
Sbjct: 183 VGVPAGHDRPHLDPLDAHGADTVLLDLAE 211

Length = 221

>gnl|CDD|213673 TIGR02009, PGMB-YQAB-SF, beta-phosphoglucomutase family hydrolase

 Score =  109 bits (274), Expect = 1e-29
 Identities = 63/187 (33%), Positives = 95/187 (50%), Gaps = 12/187 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           VI D+DG + +T  + ++  K    KYG  +D +    + G +  +    I++  G   +
Sbjct: 4   VIFDMDGVITDTAPLHAQAWKHIAAKYGISFDKQYNESLKGLSREDILRAILKLRGDGLS 63

Query: 72  ---KH---EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-TIESK 124
               H   E  NE+Y      L  V  LPG   L+K L   G+ + L S+S  A  I +K
Sbjct: 64  LEEIHQLAERKNELYRE-LLRLTGVAVLPGIRNLLKRLKAKGIAVGLGSSSKNAPRILAK 122

Query: 125 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
           +    G  + F  IV + EV+ GKP P+ FL AA+ L + P+  +V ED++ GV A +AA
Sbjct: 123 L----GLRDYFDAIVDASEVKNGKPHPETFLLAAELLGVPPNECIVFEDALAGVQAARAA 178

Query: 185 GMEVVAV 191
           GM  VAV
Sbjct: 179 GMFAVAV 185

This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509). Length = 185

>gnl|CDD|213672 TIGR01990, bPGM, beta-phosphoglucomutase

 Score =  101 bits (253), Expect = 2e-26
 Identities = 60/187 (32%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           VI DLDG + +T        K    + G  +D      + G +  E    I++  G   +
Sbjct: 2   VIFDLDGVITDTAEYHYLAWKHLADELGIPFDEEFNESLKGVSREESLERILDLGGKKYS 61

Query: 72  KHEFV------NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-TIESK 124
           + E        N+ Y      L     LPG   L+  L  + + +ALAS S  A TI  K
Sbjct: 62  EEEKEELAERKNDYYVELLKELTPADVLPGIKSLLADLKKNNIKIALASASKNAPTILEK 121

Query: 125 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
           +       + F  IV   E++ GKP P+IFL AA+ L + PS  + IED+  G+ A KAA
Sbjct: 122 L----ELIDYFDAIVDPAELKKGKPDPEIFLAAAEGLGVSPSECIGIEDAQAGIEAIKAA 177

Query: 185 GMEVVAV 191
           GM  V V
Sbjct: 178 GMFAVGV 184

This model represents the beta-phosphoglucomutase enzyme which catalyzes the interconverison of beta-D-glucose-1-phosphate and beta-D-glucose-6-phosphate. The 6-phosphate is capable of non-enzymatic anomerization (alpha <-> beta) while the 1-phosphate is not. A separate enzyme is responsible for the isomerization of the alpha anomers. Beta-D-glucose-1-phosphate results from the phosphorylysis of maltose (2.4.1.8), trehalose (2.4.1.64) or trehalose-6-phosphate (2.4.1.216). Alternatively, these reactions can be run in the synthetic direction to create the disaccharides. All sequenced genomes which contain a member of this family also appear to contain at least one putative maltose or trehalose phosphorylase. Three species, Lactococcus, Enterococcus and Neisseria appear to contain a pair of paralogous beta-PGM's. Beta-phosphoglucomutase is a member of the haloacid dehalogenase superfamily of hydrolase enzymes. These enzymes are characterized by a series of three catalytic motifs positioned within an alpha-beta (Rossman) fold. beta-PGM contains an inserted alpha helical domain in between the first and second conserved motifs and thus is a member of subfamily IA of the superfamily. The third catalytic motif comes in three variants, the third of which, containing a conserved DD or ED, is the only one found here as well as in several other related enzymes (TIGR01509). The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 185

>gnl|CDD|223620 COG0546, Gph, Predicted phosphatases [General function prediction only]

 Score =  101 bits (253), Expect = 4e-26
 Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 14/214 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           ++ DLDGTL+++           L + G      E+ + +    L+E    +       A
Sbjct: 7   ILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEA 66

Query: 72  KHEFVNEVYSMFSDH---LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
             E V  +   F      L + +  PG   L+  L   G  + + +N     ++  +   
Sbjct: 67  AAELVERLREEFLTAYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELD-ILLKA 125

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
            G  + F VIVG D+V   KP P+  L   ++L ++P  +L++ DS+  ++A KAAG+  
Sbjct: 126 LGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEEALMVGDSLNDILAAKAAGVPA 185

Query: 189 VAV------PSLPKQTHRYTAADEVINSLLDLRP 216
           V V           Q      AD VI+SL +L  
Sbjct: 186 VGVTWGYNSREELAQAG----ADVVIDSLAELLA 215

Length = 220

>gnl|CDD|222115 pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase

 Score = 98.2 bits (245), Expect = 2e-25
 Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVK-YGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
           +I DLDGTL++ D +  E L+    +  G +    E  +  G    E  A ++ ++ +  
Sbjct: 1   IIFDLDGTLIDFDPVIFEALRDLAAERLGLDISAEELREAGGLPFDEALADLLREHPIDP 60

Query: 71  A-KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129
               E + E               P    L++ L   GV + + SN  R  +E  +    
Sbjct: 61  DEILEALLEYNLESRLEP-----FPDVVELLRRLKAKGVKLVILSNGSREAVERLLEK-L 114

Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
           G  + F  +  SD+V   KP P+ +    +RL + P   L I+DS   + A +AAG++ V
Sbjct: 115 GLLDLFDAVFTSDDVGARKPDPEAYERVLERLGLPPEEILFIDDSPEDLEAARAAGIKTV 174

Query: 190 AV 191
            V
Sbjct: 175 HV 176

Length = 176

>gnl|CDD|233443 TIGR01509, HAD-SF-IA-v3, haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

 Score = 97.1 bits (242), Expect = 6e-25
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 8/183 (4%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
            V+ DLDG L++T    +  +   + +        E       +           YG   
Sbjct: 1   AVLFDLDGVLVDT----AHAIAKLVDRAEFPLVPDELGVSEVGSLELALRRWKAKYGRTM 56

Query: 71  AKHEFVNEVYSMFSDHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
           +  +       +F + L K  +K LPG   L++ L   G  +AL +NS RA  +  +   
Sbjct: 57  SAEDAQLLYKQLFYEALEKEGLKPLPGVRALLEALRARGKKLALLTNSPRADAKLVLE-- 114

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
            G    F V++ S +V  GKP PDI+L+A K+L ++PS  L ++DS  G+ A KAAGM  
Sbjct: 115 LGLRALFDVVIDSSDVGLGKPDPDIYLQALKKLGLKPSECLFVDDSPAGIDAAKAAGMHT 174

Query: 189 VAV 191
           V V
Sbjct: 175 VLV 177

This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that representing it with a single model is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 3 (this model) is found in the enzymes beta-phosphoglucomutase (TIGR01990) and deoxyglucose-6-phosphatase, while many other enzymes of subfamily IA exhibit this variant as well as variant 1 (TIGR01549). These three variant models were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model [Unknown function, Enzymes of unknown specificity]. Length = 177

>gnl|CDD|223943 COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]

 Score = 85.0 bits (210), Expect = 7e-20
 Identities = 52/218 (23%), Positives = 87/218 (39%), Gaps = 17/218 (7%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLE---EAAIIVEDYGL 68
           ++ DLDGTLL+ D      +     + G      E   +     LE          +YGL
Sbjct: 7   ILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIEKLEARFLRGEYTGEYGL 66

Query: 69  PCAK-----HEFVNEVYSMFSDHL-----CKVKALPGANRLIKHLSCHGVPMALASNSHR 118
              +        + +  +   + L       +   P A   +K L      + + +N  R
Sbjct: 67  TLERLLELLERLLGDEDAELVEELLAALAKLLPDYPEALEALKELG-KKYKLGILTNGAR 125

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178
              E K+  Q G  + F  +  S++V   KP P+IF  A ++L + P  +L + DS+   
Sbjct: 126 PHQERKLR-QLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEALFVGDSLEND 184

Query: 179 VAG-KAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDL 214
           + G +A GM+ V +    K       A D  I+SL +L
Sbjct: 185 ILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAEL 222

Length = 229

>gnl|CDD|182679 PRK10725, PRK10725, fructose-1-P/6-phosphogluconate phosphatase; Provisional

 Score = 81.7 bits (202), Expect = 6e-19
 Identities = 60/189 (31%), Positives = 95/189 (50%), Gaps = 16/189 (8%)

Query: 13  ILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAK 72
           I D+DGT+L+T+    +  +  L +YG ++D +    + G      A  I+E        
Sbjct: 9   IFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDP 68

Query: 73  HEFVNE----VYSMFSDHLCKVKALPGANRLIKHL-SCHG-VPMALASNSHRATIESKIS 126
           H    E    V SM  D    V+ LP    LI+ + + HG  PMA+ + S  A  E+ + 
Sbjct: 69  HALAREKTEAVKSMLLD---SVEPLP----LIEVVKAWHGRRPMAVGTGSESAIAEALL- 120

Query: 127 YQH-GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
             H G    F  +V +D+V+  KP+PD FL  A+ + ++P+  +V ED+  G+ A +AAG
Sbjct: 121 -AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCVVFEDADFGIQAARAAG 179

Query: 186 MEVVAVPSL 194
           M+ V V  L
Sbjct: 180 MDAVDVRLL 188

Length = 188

>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase

 Score = 80.4 bits (198), Expect = 1e-18
 Identities = 42/194 (21%), Positives = 68/194 (35%), Gaps = 24/194 (12%)

Query: 9   MSCVILDLDGTLLNTDG------MFSEVLKTFLVKY--------GKEWDGREKHKIVGKT 54
           +  V+ DLDGTL + +          E      V           KE       +++ + 
Sbjct: 1   IKAVVFDLDGTLTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRRLLLRA 60

Query: 55  PLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALAS 114
              E  +                 V  + +         PGA   +K L   G+ +A+ +
Sbjct: 61  LAGEELLEELLRAGATVVAVLDLVVLGLIALTD---PLYPGAREALKELKEAGIKLAILT 117

Query: 115 NSHRATIESKISYQHGWNESFSVIVGSDEVRT---GKPSPDIFLEAAKRLNMEPSSSLVI 171
             +R T  +           F  +V +D       GKP P IF  A + L ++P   L++
Sbjct: 118 GDNRLTANAIARLLG----LFDALVSADLYGLVGVGKPDPKIFELALEELGVKPEEVLMV 173

Query: 172 EDSVIGVVAGKAAG 185
            D V  + A KAAG
Sbjct: 174 GDGVNDIPAAKAAG 187

This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Pseudomonas sp. (S)-2-haloacid dehalogenase 1. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria. Length = 187

>gnl|CDD|236770 PRK10826, PRK10826, 2-deoxyglucose-6-phosphatase; Provisional

 Score = 77.3 bits (191), Expect = 5e-17
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 4/128 (3%)

Query: 92  ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP 151
            LPG    +      G+ + LAS S    +E  +       + F  +  ++++   KP P
Sbjct: 93  LLPGVREALALCKAQGLKIGLASASPLHMLE-AVLTMFDLRDYFDALASAEKLPYSKPHP 151

Query: 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--RYTAADEVIN 209
           +++L  A +L ++P + + +EDS  G++A KAA M  + VP+ P+Q +  R+  AD  + 
Sbjct: 152 EVYLNCAAKLGVDPLTCVALEDSFNGMIAAKAARMRSIVVPA-PEQQNDPRWALADVKLE 210

Query: 210 SLLDLRPE 217
           SL +L   
Sbjct: 211 SLTELTAA 218

Length = 222

>gnl|CDD|215416 PLN02779, PLN02779, haloacid dehalogenase-like hydrolase family protein

 Score = 77.8 bits (192), Expect = 6e-17
 Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 90  VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTG 147
           +   PG  RL+      G+ +A+ S S+   +   ++   G    +   V  G D+V   
Sbjct: 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGPERAQGLDVFAG-DDVPKK 201

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 207
           KP PDI+  AA+ L ++PS  +V+EDSVIG+ A KAAGM  +   S       ++ AD V
Sbjct: 202 KPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAV 261

Query: 208 INSLLDLRPEKWGL 221
            + L D+  E + L
Sbjct: 262 FDCLGDVPLEDFDL 275

Length = 286

>gnl|CDD|237310 PRK13222, PRK13222, phosphoglycolate phosphatase; Provisional

 Score = 74.1 bits (183), Expect = 7e-16
 Identities = 55/239 (23%), Positives = 91/239 (38%), Gaps = 60/239 (25%)

Query: 12  VILDLDGTLLNT--------DGMFSEV---------LKTF-------LVKYGKEWDGREK 47
           V  DLDGTL+++        +   + +         ++T+       LV+    W GRE 
Sbjct: 9   VAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGRE- 67

Query: 48  HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKAL-PGANRLIKHLSCH 106
                    +E         L   +  F    Y+   +++     L PG    +  L   
Sbjct: 68  --------PDEEL-------LEKLRELFD-RHYA---ENVAGGSRLYPGVKETLAALKAA 108

Query: 107 GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166
           G P+A+ +N     +   +    G  + FSV++G D +   KP P   L A ++L ++P 
Sbjct: 109 GYPLAVVTNKPTPFVA-PLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKLGLDPE 167

Query: 167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYT--------AADEVINSLLDLRPE 217
             L + DS   + A +AAG   V V      T+ Y           D VI+   +L P 
Sbjct: 168 EMLFVGDSRNDIQAARAAGCPSVGV------TYGYNYGEPIALSEPDVVIDHFAELLPL 220

Length = 226

>gnl|CDD|183215 PRK11587, PRK11587, putative phosphatase; Provisional

 Score = 73.5 bits (181), Expect = 9e-16
 Identities = 49/137 (35%), Positives = 70/137 (51%), Gaps = 19/137 (13%)

Query: 90  VKALPGANRLIKHLSCHGVPMA--------LASNSHRATIESKISYQHGWNESFSVIVGS 141
           + ALPGA  L+ HL+  G+P A        +AS  H+A          G      V V +
Sbjct: 82  ITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAA---------GLPAP-EVFVTA 131

Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
           + V+ GKP PD +L  A+ L + P   +V+ED+  GV++G AAG  V+AV + P  T R 
Sbjct: 132 ERVKRGKPEPDAYLLGAQLLGLAPQECVVVEDAPAGVLSGLAAGCHVIAV-NAPADTPRL 190

Query: 202 TAADEVINSLLDLRPEK 218
              D V++SL  L   K
Sbjct: 191 DEVDLVLHSLEQLTVTK 207

Length = 218

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 69.7 bits (171), Expect = 5e-15
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%)

Query: 89  KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV---- 144
           +++  PG    +K L   G+ +ALA+N  R  +   +  + G ++ F  ++ S+      
Sbjct: 22  ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLE-ELGLDDYFDPVITSNGAAIYY 80

Query: 145 ------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
                         GKP+PD  L A K L ++P   L++ DS+  +   KAAG   VAV
Sbjct: 81  PKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV 139

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|215497 PLN02919, PLN02919, haloacid dehalogenase-like hydrolase family protein

 Score = 74.1 bits (182), Expect = 5e-15
 Identities = 39/98 (39%), Positives = 57/98 (58%)

Query: 94  PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153
           PGA  LI      G+ +A+AS++ R  +++ ++        F  IV +D     KP+PDI
Sbjct: 164 PGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDI 223

Query: 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
           FL AAK L +  S  +VIED++ GV A +AAGM  +AV
Sbjct: 224 FLAAAKILGVPTSECVVIEDALAGVQAARAAGMRCIAV 261

Length = 1057

>gnl|CDD|130521 TIGR01454, AHBA_synth_RP, 3-amino-5-hydroxybenoic acid synthesis related protein

 Score = 68.4 bits (167), Expect = 6e-14
 Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 32/192 (16%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI--------IV 63
           V+ DLDG L+++   F+ + + F + Y +E  G       G  P EE           I+
Sbjct: 1   VVFDLDGVLVDS---FAVMREAFAIAY-REVVGD------GPAPFEEYRRHLGRYFPDIM 50

Query: 64  EDYGLPCAKHE-FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSH----R 118
              GLP    E FV E Y +      +V+  PG   L+  L   GV  A+A+       R
Sbjct: 51  RIMGLPLEMEEPFVRESYRLAG----EVEVFPGVPELLAELRADGVGTAIATGKSGPRAR 106

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178
           + +E+      G    F  ++GSDEV   KP+PDI  EA + L++ P  ++++ D+V  +
Sbjct: 107 SLLEAL-----GLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAVMVGDAVTDL 161

Query: 179 VAGKAAGMEVVA 190
            + +AAG   VA
Sbjct: 162 ASARAAGTATVA 173

The enzymes in this equivalog are all located in the operons for the biosynthesis of 3-amino-5-hydroxybenoic acid (AHBA), which is a precursor of several antibiotics including ansatrienin , naphthomycin , rifamycin and mitomycin. The role that this enzyme plays in this biosynthesis has not been elucidated. This enzyme is a member of the Haloacid dehalogenase superfamily (pfam00702) of aspartate-nucleophile hydrolases. This enzyme is closely related to phosphoglycolate phosphatase (TIGR01449), but it is unclear what purpose a PGPase or PGPase-like activity would serve in these biosyntheses. This model is limited to the Gram positive Actinobacteria. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity. Length = 205

>gnl|CDD|215413 PLN02770, PLN02770, haloacid dehalogenase-like hydrolase family protein

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 57/194 (29%), Positives = 91/194 (46%), Gaps = 19/194 (9%)

Query: 9   MSCVILDLDGTLLNTDGM----FSEVLKTFLVKYGKEWDGREK---HKIVGKTPLEEAAI 61
           +  V+ D+DGTL ++D +    F E+L+      G      E+     I GK   + A  
Sbjct: 22  LEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPIT--EEFFVENIAGKHNEDIALG 79

Query: 62  IVED---YGLPCAKHEFVNEVYSMFSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSH 117
           +  D    GL     +F ++  ++F      ++K L G  +L K +   G+  A  +N+ 
Sbjct: 80  LFPDDLERGL-----KFTDDKEALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAP 134

Query: 118 RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 177
           R   E  IS   G ++ F  ++   E    KP PD +L+A + L +    + V EDSV G
Sbjct: 135 RENAELMISLL-GLSDFFQAVIIGSECEHAKPHPDPYLKALEVLKVSKDHTFVFEDSVSG 193

Query: 178 VVAGKAAGMEVVAV 191
           + AG AAGM VV +
Sbjct: 194 IKAGVAAGMPVVGL 207

Length = 248

>gnl|CDD|130516 TIGR01449, PGP_bact, 2-phosphoglycolate phosphatase, prokaryotic

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 91  KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150
              PG    +  L   G+ + L +N         +    G  + FSV++G D +   KP 
Sbjct: 85  SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELL-GLAKYFSVLIGGDSLAQRKPH 143

Query: 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
           PD  L AA+RL + P   + + DS + + A +AAG   V +
Sbjct: 144 PDPLLLAAERLGVAPQQMVYVGDSRVDIQAARAAGCPSVLL 184

PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In Ralstonia (Alcaligenes) eutropha and Rhodobacter sphaeroides, the PGP gene (CbbZ) is located on an operon along with other Calvin cycle enzymes including RubisCO. The only other pertinent experimental evidence concerns the gene from E. coli. The in vitro activity of the Ralstonia and Escherichia enzymes was determined with crude cell extracts of strains containing PGP on expression plasmids and compared to controls. In E. coli, however, there does not appear to be a functional Calvin cycle (RubisCO is absent), although the E. coli PGP gene (gph) is on the same operon (dam) with ribulose-5-phosphate-3-epimerase (rpe), a gene in the pentose-phosphate pathway (along with other, unrelated genes). The E. coli enzyme is not expressed under normal laboratory conditions; the pathway to which it belongs has not been determined. In fact, the possibility exists, although unlikely, that the E. coli enzyme and others within this equivalog have as their physiological substrate another, closely related molecule. The other seed chosen for this model, from Xylella fastidiosa has no experimental evidence, but is a plant pathogen and thus may obtain phosphoglycolate from its host. This model has been restricted to encompass only proteobacteria as no related PGP has been verified outside of this clade. Sequences from Aquifex aeolicus and Treponema pallidum fall between the trusted and noise cutoffs. Just below the noise cutoff is a gene which is part of the operon for the biosynthesis of the blue pigment, indigoidine, from Erwinia (Pectobacterium) chrysanthemi, a plant pathogen. It does not seem likely, considering the proposed biosynthetic mechanism, that the dephosphorylation of phosphoglycolate or a closely related compound is required. Possibly, this gene is fortuitously located in this operon, or has an indirect relationship to the necessity for the biosynthesis of this compound. Sequences from 11 species have been annotated as PGP or putative PGP but fall below the noise cutoff. None of these have experimental validation. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702) [Energy metabolism, Sugars]. Length = 213

>gnl|CDD|215313 PLN02575, PLN02575, haloacid dehalogenase-like hydrolase

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 44/120 (36%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 95  GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 154
           G+   +  L  + +PMAL S   R T+E+ I    G    FSVIV +++V  GKP P++F
Sbjct: 220 GSQEFVNVLMNYKIPMALVSTRPRKTLENAIG-SIGIRGFFSVIVAAEDVYRGKPDPEMF 278

Query: 155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           + AA+ LN  P   +V  +S   V A   A M+ VAV S     +   AAD V+  L +L
Sbjct: 279 IYAAQLLNFIPERCIVFGNSNQTVEAAHDARMKCVAVAS-KHPIYELGAADLVVRRLDEL 337

Length = 381

>gnl|CDD|215644 PLN03243, PLN03243, haloacid dehalogenase-like hydrolase; Provisional

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 2/124 (1%)

Query: 91  KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150
           +  PG+   ++ L  H +P+A+AS   R  +E  I    G    FSV++ +++V  GKP 
Sbjct: 109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIE-AVGMEGFFSVVLAAEDVYRGKPD 167

Query: 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 210
           P++F+ AA+RL   P   +V  +S   V A     M+ VAV       +  +A D V+  
Sbjct: 168 PEMFMYAAERLGFIPERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRR 226

Query: 211 LLDL 214
           L DL
Sbjct: 227 LDDL 230

Length = 260

>gnl|CDD|162787 TIGR02253, CTE7, HAD superfamily (subfamily IA) hydrolase, TIGR02253

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 47/225 (20%), Positives = 88/225 (39%), Gaps = 31/225 (13%)

Query: 12  VILDLDGTLLNTDGMFSEVLKT---FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL 68
           +  DLD TL++T G+  +  +     L++ G   D  E ++ + K        ++++YG 
Sbjct: 5   IFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLK--------LIKEYGS 56

Query: 69  PCAKH---------------EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALA 113
               H                    VY+        ++  PG    +  L   G  + + 
Sbjct: 57  NYPTHFDYLIRRLWEEYNPKLVAAFVYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGII 116

Query: 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED 173
           ++        K+  + G  + F  ++ S+E    KP P IF  A KRL ++P  ++++ D
Sbjct: 117 TDGLPVKQWEKLE-RLGVRDFFDAVITSEEEGVEKPHPKIFYAALKRLGVKPEEAVMVGD 175

Query: 174 SVI-GVVAGKAAGMEVVAVPSLPKQTHR---YTAADEVINSLLDL 214
            +   +   K  GM+ V +            Y   D  I+SL +L
Sbjct: 176 RLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220

This family of sequences from archaea and metazoans includes the human uncharacterized protein CTE7. Pyrococcus species appear to have three different forms of this enzyme, so it is unclear whether all members of this family have the same function. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Length = 221

>gnl|CDD|222003 pfam13242, Hydrolase_like, HAD-hyrolase-like

 Score = 57.7 bits (140), Expect = 3e-11
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 14/77 (18%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--- 203
           GKP+P +   A +RL ++P   ++I DS   ++A +AAG+  + V      T   TA   
Sbjct: 3   GKPNPGMLRAALERLGVDPEECVMIGDSDTDILAARAAGIRTILVL-----TGVTTAEDL 57

Query: 204 ------ADEVINSLLDL 214
                  D V++SL DL
Sbjct: 58  ERAPGRPDYVVDSLADL 74

Length = 74

>gnl|CDD|182552 PRK10563, PRK10563, 6-phosphogluconate phosphatase; Provisional

 Score = 60.1 bits (146), Expect = 6e-11
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 21/188 (11%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEE-AAIIVEDYGLP 69
            V  D DGTL++++ + S    T   ++G      E  K      L E   II +++G+ 
Sbjct: 6   AVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVT 65

Query: 70  CAKHE----FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
            AK E    +  EV  +F   L   + + GAN L++ ++   VPM + SN       SK+
Sbjct: 66  LAKAELEPVYRAEVARLFDSEL---EPIAGANALLESIT---VPMCVVSNGP----VSKM 115

Query: 126 SYQHGWNESFS-----VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
            +  G           +  G D ++  KP P +   AA+ +N+   + ++++DS  G  +
Sbjct: 116 QHSLGKTGMLHYFPDKLFSGYD-IQRWKPDPALMFHAAEAMNVNVENCILVDDSSAGAQS 174

Query: 181 GKAAGMEV 188
           G AAGMEV
Sbjct: 175 GIAAGMEV 182

Length = 221

>gnl|CDD|233463 TIGR01549, HAD-SF-IA-v1, haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 23/179 (12%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK--TPLEEAAIIVEDYGLP 69
           ++ D+DGTL++                       E+  +       L+    + E+    
Sbjct: 2   ILFDIDGTLVDIKFAIRRAFAQTF----------EEFGLNPAAFKRLKALRGLAEE---- 47

Query: 70  CAKHEFVNEVYSMFSDHLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 126
                   E       H+    +   +PGA  L+  L   G+ + + SN      +  + 
Sbjct: 48  -LLWRIATEALEELQGHIGYDAEEAYIPGAADLLPRLKEAGIKLGIISNGSLRAQKLLLR 106

Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
             HG  + F +I+GSDE+ + KP P+IFL A + L + P   L + D++  +   + AG
Sbjct: 107 K-HGLGDYFELILGSDEIGS-KPEPEIFLAALESLGVPP-EVLHVGDNLSDIKGARNAG 162

This model represents part of one structural subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called "capping domain", or the absence of such a domain. Subfamily I consists of sequences in which the capping domain is found in between the first and second catalytic motifs. Subfamily II consists of sequences in which the capping domain is found between the second and third motifs. Subfamily III sequences have no capping domain in either of these positions.The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single representation is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)(D/E), (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only one of the variants each. Variant 1 (this model) is found in the enzymes phosphoglycolate phosphatase (TIGR01449) and enolase-phosphatase. These three variant models (see also TIGR01493 and TIGR01509) were created withthe knowledge that there will be overlap among them - this is by design and serves the purpose of eliminating the overlap with models of more distantly relatedHAD subfamilies caused by an overly broad single model [Unknown function, Enzymes of unknown specificity]. Length = 162

>gnl|CDD|237336 PRK13288, PRK13288, pyrophosphatase PpaX; Provisional

 Score = 59.7 bits (145), Expect = 9e-11
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 26/191 (13%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK---TPLEEA-AIIVEDYG 67
           V+ DLDGTL+NT+ +   ++ +FL      +  + K + V       L +  + I E   
Sbjct: 6   VLFDLDGTLINTNEL---IISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESK- 61

Query: 68  LPCAKHEFVNEVYSMFSD-----HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIE 122
                   V E+ + + +     H   V         +K L   G  + + +   R T+E
Sbjct: 62  --------VEEMITTYREFNHEHHDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVE 113

Query: 123 S--KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
              K++   G +E F V++  D+V   KP P+  L+A + L  +P  +L++ D+   ++A
Sbjct: 114 MGLKLT---GLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKPEEALMVGDNHHDILA 170

Query: 181 GKAAGMEVVAV 191
           GK AG +   V
Sbjct: 171 GKNAGTKTAGV 181

Length = 214

>gnl|CDD|171912 PRK13223, PRK13223, phosphoglycolate phosphatase; Provisional

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 66/242 (27%), Positives = 93/242 (38%), Gaps = 57/242 (23%)

Query: 7   KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK------------------- 47
           +L   V+ DLDGTL+++    +  +   L++ G+   G E                    
Sbjct: 11  RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAG 70

Query: 48  ---HKIVGKTPLEEA-AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHL 103
              H  V     E+A A+ +E Y      HE    VY             PG    +K L
Sbjct: 71  SIDHDGVDDELAEQALALFMEAYA---DSHEL-TVVY-------------PGVRDTLKWL 113

Query: 104 SCHGVPMALASNSHRATI-----ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA 158
              GV MAL +N     +     + KI     W      I+G D +   KP P   L   
Sbjct: 114 KKQGVEMALITNKPERFVAPLLDQMKIGRYFRW------IIGGDTLPQKKPDPAALLFVM 167

Query: 159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE----VINSLLDL 214
           K   + PS SL + DS   V+A KAAG++ VA+       H    A+E    VI+ L  L
Sbjct: 168 KMAGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSY--GYNHGRPIAEESPALVIDDLRAL 225

Query: 215 RP 216
            P
Sbjct: 226 LP 227

Length = 272

>gnl|CDD|234176 TIGR03351, PhnX-like, phosphonatase-like hydrolase

 Score = 54.8 bits (132), Expect = 5e-09
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 30/199 (15%)

Query: 10  SCVILDLDGTLLNTDGMFSEVLKTFLVKYG---------KEWDGREKHKIV------GKT 54
           S V+LD+ GT ++ DG+    L+  +   G           W G+ K + +         
Sbjct: 2   SLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLAADGA 61

Query: 55  PLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALAS 114
              EA     D+           E  +   D      ALPGA    + L   G+ +AL +
Sbjct: 62  DEAEAQAAFADF----------EERLAEAYDDG-PPVALPGAEEAFRSLRSSGIKVALTT 110

Query: 115 NSHRATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVI 171
              R T E ++  + GW   +    +V   +V  G+P+PD+ L A +   ++   S  V 
Sbjct: 111 GFDRDTAE-RLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTGVQDVQSVAVA 169

Query: 172 EDSVIGVVAGKAAGMEVVA 190
            D+   + AG  AG   V 
Sbjct: 170 GDTPNDLEAGINAGAGAVV 188

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the substrate is also, like Pald, a 2-oxo-ethylphosphonate. Despite this, the genomic context of members of this family are quite distinct from PhnX, which is almost invariably associated with the 2-aminoethylphosphonate transaminase PhnW (TIGR02326), the source of the substrate Pald. Members of this clade are never associated with PhnW, but rather associate with families of FAD-dependent oxidoreductases related to deaminating amino acid oxidases (pfam01266) as well as zinc-dependent dehydrogenases (pfam00107). Notably, family members from Arthrobacter aurescens TC1 and Nocardia farcinica IFM 10152 are adjacent to the PhnCDE ABC cassette phosphonates transporter (GenProp0236) typically found in association with the phosphonates C-P lyase system (GenProp0232). These observations suggest two possibilities. First, the substrate for this enzyme family is also Pald, the non-association with PhnW not withstanding. Alternatively, the substrate is something very closely related such as hydroxyphosphonoacetaldehyde (Hpald). Hpald could come from oxidative deamination of 1-hydroxy-2-aminoethylphosphonate (HAEP) by the associated oxidase. HAEP would not be a substrate for PhnW due to its high specificity for AEP. HAEP has been shown to be a constituent of the sphingophosphonolipid of Bacteriovorax stolpii, and presumably has other natural sources. If Hpald is the substrate, the product would be glycoaldehyde (hydroxyacetaldehyde), and the associated alcohol dehydrogenase may serve to convert this to glycol. Length = 220

>gnl|CDD|200170 TIGR02252, DREG-2, REG-2-like, HAD superfamily (subfamily IA) hydrolase

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)

Query: 69  PCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASN---SHRATIESKI 125
           P +  +   E+YS F+      +  P A +L+K L   G+ + + SN     R  +E+  
Sbjct: 84  PESFEKIFEELYSYFATPEP-WQVYPDAIKLLKDLRERGLILGVISNFDSRLRGLLEAL- 141

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI-GVVAGKAA 184
               G  E F  +V S EV   KP P IF EA +R  + P  +L I DS+       +AA
Sbjct: 142 ----GLLEYFDFVVTSYEVGAEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAA 197

Query: 185 GM 186
           G 
Sbjct: 198 GW 199

This family of proteins includes uncharacterized sequences from eukaryotes, cyanobacteria and Leptospira as well as the DREG-2 protein from Drosophila melanogaster which has been identified as a rhythmically (diurnally) regulated gene. This family is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The superfamily is defined by the presence of three short catalytic motifs. The subfamilies are defined based on the location and the observed or predicted fold of a so-called 'capping domain', or the absence of such a domain. This family is a member of subfamily 1A in which the cap domain consists of a predicted alpha helical bundle found in between the first and second catalytic motifs. A distinctive feature of this family is a conserved tandem pair of tryptophan residues in the cap domain. The most divergent sequences included within the scope of this model are from plants and have "FW" at this position instead. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes. Length = 203

>gnl|CDD|237311 PRK13226, PRK13226, phosphoglycolate phosphatase; Provisional

 Score = 49.1 bits (117), Expect = 5e-07
 Identities = 22/64 (34%), Positives = 36/64 (56%)

Query: 128 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187
           Q GW +  +V++G D +   KP P   L AA+R+ + P+  + + D    ++A +AAGM 
Sbjct: 131 QLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVAPTDCVYVGDDERDILAARAAGMP 190

Query: 188 VVAV 191
            VA 
Sbjct: 191 SVAA 194

Length = 229

>gnl|CDD|129317 TIGR00213, GmhB_yaeD, D,D-heptose 1,7-bisphosphate phosphatase

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAAD 205
           KP P + L+A K L+++ + S ++ D +  + AG AA     V+     P        AD
Sbjct: 106 KPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIAD 165

Query: 206 EVINSLLDL 214
            V+NSL DL
Sbjct: 166 WVLNSLADL 174

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PMID:11751812) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 176

>gnl|CDD|233512 TIGR01656, Histidinol-ppas, histidinol-phosphate phosphatase family domain

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 18/46 (39%), Positives = 27/46 (58%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS 193
           KP P + LEA KRL ++ S SLV+ D +  + A + AG+  V +  
Sbjct: 101 KPKPGLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD 146

This domain is found in authentic histidinol-phosphate phosphatases which are sometimes found as stand-alone entities and sometimes as fusions with imidazoleglycerol-phosphate dehydratase (TIGR01261). Additionally, a family of proteins including YaeD from E. coli (TIGR00213) and various other proteins are closely related but may not have the same substrate specificity. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3. Length = 147

>gnl|CDD|188140 TIGR01422, phosphonatase, phosphonoacetaldehyde hydrolase

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 26/101 (25%), Positives = 51/101 (50%), Gaps = 5/101 (4%)

Query: 94  PGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNESFSVIVGSDEVRTGKPSP 151
           PGA  +I +L   G+ +   +   R  ++  +  +   G+   +   V +D+V  G+P+P
Sbjct: 102 PGAIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAAAQGYRPDY--NVTADDVPAGRPAP 159

Query: 152 DIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGMEVVAV 191
            + L+ A  L +   +++V + D+V  +  G+ AGM  V V
Sbjct: 160 WMALKNATELGVYDPAAVVKVGDTVPDIEEGRNAGMWTVGV 200

This enzyme catalyzes the cleavage of the carbon phosphorous bond of a phosphonate. The mechanism depends on the substrate having a carbonyl one carbon away from the cleavage position. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent [Central intermediary metabolism, Other]. Length = 253

>gnl|CDD|223319 COG0241, HisB, Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME-VVAVPSLPKQTHRYTAADE 206
           KP P + L A K  N++ S S V+ D +  + A + AG++ V+ +  +   T     A  
Sbjct: 105 KPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKW 164

Query: 207 VINSLLDL 214
           V +SL + 
Sbjct: 165 VFDSLAEF 172

Length = 181

>gnl|CDD|162372 TIGR01458, HAD-SF-IIA-hyp3, HAD-superfamily subfamily IIA hydrolase, TIGR01458

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG-KAAGMEVVAVPSLPKQTHRYTAAD 205
           GKPS   FLEA +    EP  +++I D     V G +  GM  + V     +T +Y  +D
Sbjct: 178 GKPSKTFFLEALRATGCEPEEAVMIGDDCRDDVGGAQDCGMRGIQV-----RTGKYRPSD 232

Query: 206 E 206
           E
Sbjct: 233 E 233

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published [Unknown function, Enzymes of unknown specificity]. Length = 257

>gnl|CDD|106187 PRK13225, PRK13225, phosphoglycolate phosphatase; Provisional

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 38/201 (18%), Positives = 77/201 (38%), Gaps = 30/201 (14%)

Query: 3   QPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------------KEWDGREKHKI 50
           Q   + +  +I D DGTL+++      +       +G            ++W  R   + 
Sbjct: 56  QSYPQTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRR 115

Query: 51  VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPM 110
            G +P ++A ++                V     D L  ++  PG   L+  L    + +
Sbjct: 116 AGLSPWQQARLL--------------QRVQRQLGDCLPALQLFPGVADLLAQLRSRSLCL 161

Query: 111 ALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170
            + S++ R  IE+ +  Q G    FSV+     + + + +     +   R   +P++ + 
Sbjct: 162 GILSSNSRQNIEAFLQRQ-GLRSLFSVVQAGTPILSKRRA---LSQLVAREGWQPAAVMY 217

Query: 171 IEDSVIGVVAGKAAGMEVVAV 191
           + D    V A +  G+  VAV
Sbjct: 218 VGDETRDVEAARQVGLIAVAV 238

Length = 273

>gnl|CDD|223720 COG0647, NagD, Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAV 191
           GKPSP I+  A ++L ++ S  L++ D +   ++  KAAG++ + V
Sbjct: 189 GKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLV 234

Length = 269

>gnl|CDD|236354 PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate phosphatase; Validated

 Score = 39.0 bits (92), Expect = 8e-04
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
           KP P + L  A+RLN++ + S ++ DS+  + A  AAG
Sbjct: 103 KPKPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAG 140

Length = 181

>gnl|CDD|162788 TIGR02254, YjjG/YfnB, HAD superfamily (subfamily IA) hydrolase, TIGR02254

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 26/198 (13%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKE----------------WDGREKHKIVGKT- 54
           ++ DLD T+L+     +  L+      G                  W   E+ KI     
Sbjct: 4   LLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEV 63

Query: 55  PLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHG-VPMALA 113
                + ++++Y    A    +N+ Y  F +   ++  LPGA  L+++L       + + 
Sbjct: 64  VNTRFSALLKEYNTE-ADEALLNQKYLRFLEEGHQL--LPGAFELMENL--QQKFRLYIV 118

Query: 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIE 172
           +N  R T   ++  + G    F  I  S++    KP  +IF  A +R+        L+I 
Sbjct: 119 TNGVRETQYKRLR-KSGLFPFFDDIFVSEDAGIQKPDKEIFNYALERMPKFSKEEVLMIG 177

Query: 173 DSVIG-VVAGKAAGMEVV 189
           DS+   +  G+ AG++  
Sbjct: 178 DSLTADIKGGQNAGLDTC 195

This family consists of uncharacterized proteobacterial and gram positive bacterial sequences including YjjG from E. coli and YfnB from B. subtilis. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases. Length = 224

>gnl|CDD|233675 TIGR01993, Pyr-5-nucltdase, pyrimidine 5'-nucleotidase

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
           KPSP  + +A +   ++P  ++  +DS   + AGKA GM+ V V
Sbjct: 140 KPSPQAYEKALREAGVDPERAIFFDDSARNIAAGKALGMKTVLV 183

This family of proteins includes the SDT1/SSM1 gene from yeast which has been shown to code for a pyrimidine (UMP/CMP) 5'nucleotidase. The family spans plants, fungi and a small number of bacteria. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509). Length = 183

>gnl|CDD|184075 PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV-IEDSVIGVVAGKAAGMEVVAV 191
            +V +D+V  G+P P + L+ A  L +   ++ V ++D+V G+  G  AGM  V V
Sbjct: 147 HVVTTDDVPAGRPYPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGV 202

Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
PLN02940	382	riboflavin kinase	100.0
COG0546	220	Gph Predicted phosphatases [General function predi	100.0
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	100.0
PRK13288	214	pyrophosphatase PpaX; Provisional	100.0
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	100.0
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	100.0
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	100.0
PRK13226	229	phosphoglycolate phosphatase; Provisional	100.0
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	100.0
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	100.0
PLN02575	381	haloacid dehalogenase-like hydrolase	99.98
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.98
PRK11587	218	putative phosphatase; Provisional	99.98
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.98
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.97
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.97
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.97
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.97
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.97
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.97
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.97
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.97
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.97
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.97
PRK09449	224	dUMP phosphatase; Provisional	99.97
PLN02811	220	hydrolase	99.96
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.96
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.96
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.96
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.96
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.96
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.96
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.96
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.95
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	99.95
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.94
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.94
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.94
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.94
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.93
PHA02597	197	30.2 hypothetical protein; Provisional	99.93
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.92
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.91
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.91
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.9
PLN02954	224	phosphoserine phosphatase	99.89
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	99.89
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	99.89
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.88
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.88
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.87
PRK06769	173	hypothetical protein; Validated	99.87
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.87
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.85
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.84
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.83
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	99.83
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.83
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.83
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.82
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.81
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.79
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.78
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	99.77
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.77
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.76
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.75
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.75
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	99.75
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	99.74
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.74
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	99.71
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.71
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.7
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.7
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	99.69
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.68
PRK10444	248	UMP phosphatase; Provisional	99.67
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.67
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.65
PRK11590	211	hypothetical protein; Provisional	99.64
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.64
PLN02645	311	phosphoglycolate phosphatase	99.64
COG4229	229	Predicted enolase-phosphatase [Energy production a	99.62
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	99.61
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.6
PRK08238	479	hypothetical protein; Validated	99.56
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	99.55
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	99.55
PRK01158	230	phosphoglycolate phosphatase; Provisional	99.54
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	99.54
PHA02530	300	pseT polynucleotide kinase; Provisional	99.52
COG0241	181	HisB Histidinol phosphatase and related phosphatas	99.52
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	99.5
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	99.49
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.48
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.48
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	99.48
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	99.46
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	99.45
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	99.45
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	99.44
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	99.43
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	99.41
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.41
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	99.4
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	99.39
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	99.39
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.36
PRK10513	270	sugar phosphate phosphatase; Provisional	99.33
PRK10976	266	putative hydrolase; Provisional	99.32
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	99.3
PLN02887	580	hydrolase family protein	99.29
PTZ00445	219	p36-lilke protein; Provisional	99.27
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	99.24
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	99.24
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.22
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.21
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.2
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	99.19
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	99.17
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	99.15
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	99.15
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	99.14
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	99.13
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	99.13
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	99.12
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	99.07
COG4359	220	Uncharacterized conserved protein [Function unknow	99.06
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	99.05
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.02
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	99.01
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.01
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	99.01
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	98.96
KOG2630	254	consensus Enolase-phosphatase E-1 [Amino acid tran	98.87
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	98.85
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	98.85
PLN02382	413	probable sucrose-phosphatase	98.81
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	98.81
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.77
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.76
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	98.76
PRK10671	834	copA copper exporting ATPase; Provisional	98.74
COG4087	152	Soluble P-type ATPase [General function prediction	98.74
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	98.72
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	98.65
COG4996	164	Predicted phosphatase [General function prediction	98.61
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.6
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.59
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	98.58
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	98.56
PLN02177	497	glycerol-3-phosphate acyltransferase	98.56
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	98.55
PTZ00174	247	phosphomannomutase; Provisional	98.55
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.52
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	98.47
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	98.4
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	98.37
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	98.36
COG3700	237	AphA Acid phosphatase (class B) [General function	98.34
COG2503	274	Predicted secreted acid phosphatase [General funct	98.34
COG5663	194	Uncharacterized conserved protein [Function unknow	98.29
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.28
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	98.27
PLN02423	245	phosphomannomutase	98.24
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	98.23
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	98.22
PRK14010	673	potassium-transporting ATPase subunit B; Provision	98.19
PRK01122	679	potassium-transporting ATPase subunit B; Provision	98.18
PLN02645	311	phosphoglycolate phosphatase	98.1
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.09
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	98.03
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.01
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	98.01
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	97.99
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	97.98
PRK15122	903	magnesium-transporting ATPase; Provisional	97.92
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	97.91
PLN02580	384	trehalose-phosphatase	97.81
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	97.79
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.77
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	97.72
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	97.72
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	97.62
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	97.58
KOG0202	972	consensus Ca2+ transporting ATPase [Inorganic ion	97.55
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	97.51
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.49
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.41
KOG2470	510	consensus Similar to IMP-GMP specific 5'-nucleotid	97.4
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	97.39
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	97.39
COG5610	635	Predicted hydrolase (HAD superfamily) [General fun	97.38
COG4030	315	Uncharacterized protein conserved in archaea [Func	97.27
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	97.26
PLN02499	498	glycerol-3-phosphate acyltransferase	97.24
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	97.19
PLN03190	1178	aminophospholipid translocase; Provisional	97.17
PLN03017	366	trehalose-phosphatase	97.15
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	97.07
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	96.75
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	96.48
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	96.48
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	96.43
KOG3128	298	consensus Uncharacterized conserved protein [Funct	96.42
TIGR01658	274	EYA-cons_domain eyes absent protein conserved doma	96.41
PF05822	246	UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); Inter	96.31
KOG0206	1151	consensus P-type ATPase [General function predicti	96.22
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	96.15
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	96.14
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	96.11
KOG3107	468	consensus Predicted haloacid dehalogenase-like hyd	96.05
PRK10444	248	UMP phosphatase; Provisional	95.54
KOG0210	1051	consensus P-type ATPase [Inorganic ion transport a	95.49
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	95.23
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	94.91
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	94.49
PLN02151	354	trehalose-phosphatase	93.96
KOG0204	1034	consensus Calcium transporting ATPase [Inorganic i	93.75
KOG2116	738	consensus Protein involved in plasmid maintenance/	92.58
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	92.55
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	91.04
KOG1618	389	consensus Predicted phosphatase [General function	90.7
KOG0209	1160	consensus P-type ATPase [Inorganic ion transport a	90.6
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	90.29
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	89.75
PRK10513	270	sugar phosphate phosphatase; Provisional	89.69
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	89.52
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	89.51
KOG2469	424	consensus IMP-GMP specific 5'-nucleotidase [Nucleo	89.51
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	89.13
PRK00994	277	F420-dependent methylenetetrahydromethanopterin de	88.65
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	88.61
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	88.54
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	88.4
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	88.23
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	88.02
PRK00208	250	thiG thiazole synthase; Reviewed	87.91
PRK01158	230	phosphoglycolate phosphatase; Provisional	87.76
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	86.88
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	86.86
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	86.73
PTZ00445	219	p36-lilke protein; Provisional	86.19
PRK10976	266	putative hydrolase; Provisional	86.04
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	85.86
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	85.75
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	85.73
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	85.44
KOG4549	144	consensus Magnesium-dependent phosphatase [General	85.29
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	85.25
PLN02151	354	trehalose-phosphatase	85.14
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	84.73
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	84.7
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	83.66
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	83.55
PRK05627	305	bifunctional riboflavin kinase/FMN adenylyltransfe	83.37
KOG0203	1019	consensus Na+/K+ ATPase, alpha subunit [Inorganic	83.07
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	82.96
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	82.87
PF06014	62	DUF910: Bacterial protein of unknown function (DUF	82.79
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	82.06
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	81.13

>PLN02940 riboflavin kinase

Probab=100.00  E-value=1.9e-42  Score=290.02  Aligned_cols=254  Identities=78%  Similarity=1.268  Sum_probs=228.5

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      ...+|+|+||+||||+|+...+..++..+++++|..++........|.+..+.++.+++.++++...+++.+.+.+.+..
T Consensus         8 ~~~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (382)
T PLN02940          8 KKLVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWDGREAQKIVGKTPLEAAATVVEDYGLPCSTDEFNSEITPLLSE   87 (382)
T ss_pred             cccCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999998887777788889888888888888888776667777777776666


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .+....++||+.++|+.|+++|++++|+||+....+...+++..++..+|+.+++++++...||+|+.+..++++++++|
T Consensus        88 ~~~~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~~lgv~p  167 (382)
T PLN02940         88 QWCNIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAKRLNVEP  167 (382)
T ss_pred             HHccCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHHHcCCCh
Confidence            66678899999999999999999999999999998888883378999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCCCCCcccccCCCCCCCccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVK  245 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  245 (260)
                      +++++|||+..|+.+|+++|+.++++.++.........++++++++.++...-.++|+++||+.++.+.+|+-+.|.+++
T Consensus       168 ~~~l~VGDs~~Di~aA~~aGi~~I~v~~g~~~~~~~~~ad~~i~sl~el~~~~~~~~~~~~~~~~~~~~~~y~~~G~Vv~  247 (382)
T PLN02940        168 SNCLVIEDSLPGVMAGKAAGMEVIAVPSIPKQTHLYSSADEVINSLLDLQPEKWGLPPFNDWIEGTLPIEPWHIGGPVIK  247 (382)
T ss_pred             hHEEEEeCCHHHHHHHHHcCCEEEEECCCCcchhhccCccEEeCCHhHcCHHHcCCCCccccccCcCCcCCEEEEEEEEe
Confidence            99999999999999999999999999886543434567889999999998887889999999999999999999999999


Q ss_pred             cccCCccccCCCCC
Q 024956          246 GLGRGSKVLGIPTG  259 (260)
Q Consensus       246 ~~~~~~~~~~~~~~  259 (260)
                      |+|||++.+|+|||
T Consensus       248 G~~~G~~~lg~PTa  261 (382)
T PLN02940        248 GFGRGSKVLGIPTA  261 (382)
T ss_pred             CCccCcccCCCCcc
Confidence            99999999999998

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=100.00  E-value=2.6e-32  Score=213.59  Aligned_cols=211  Identities=25%  Similarity=0.398  Sum_probs=179.0

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      +++++|+||+||||+|+...+..++..++++++.. ..........|......+............. +..+.+.+.+..
T Consensus         2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (220)
T COG0546           2 MMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLIGLGLDELIERLLGEADEEAAA-ELVERLREEFLT   80 (220)
T ss_pred             CCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHhcCCHHHHHHHHhccccchhHH-HHHHHHHHHHHH
Confidence            56899999999999999999999999999999988 6788888888888887776665544333211 344455444444


Q ss_pred             hhcc---CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           86 HLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        86 ~~~~---~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .+..   ..++||+.++|.+|+++|++++|+||.....+...+ +.+|+..+|+.+++.++....||+|..+..++++++
T Consensus        81 ~~~~~~~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l-~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~~~~  159 (220)
T COG0546          81 AYAELLESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILL-KALGLADYFDVIVGGDDVPPPKPDPEPLLLLLEKLG  159 (220)
T ss_pred             HHHhhccCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHhCCccccceEEcCCCCCCCCcCHHHHHHHHHHhC
Confidence            4332   479999999999999999999999999999999999 889999999999998888999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC-cccc-ccccchhcccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QTHR-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~-~~~~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|++++||||+.+|+.+|+++|+.++.+.+++. .... ...+++++.++.||...+.
T Consensus       160 ~~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~~g~~~~~~l~~~~~d~vi~~~~el~~~l~  218 (220)
T COG0546         160 LDPEEALMVGDSLNDILAAKAAGVPAVGVTWGYNSREELAQAGADVVIDSLAELLALLA  218 (220)
T ss_pred             CChhheEEECCCHHHHHHHHHcCCCEEEEECCCCCCcchhhcCCCEEECCHHHHHHHHh
Confidence            9988999999999999999999999999999764 2233 6679999999999887654

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=100.00  E-value=8.9e-32  Score=211.43  Aligned_cols=209  Identities=22%  Similarity=0.376  Sum_probs=171.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh-hhhhhccCCCHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGL-PCAKHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   84 (260)
                      .++|+|+||+||||+|+...+..++.+++.+++...+. .......|.......+.+...... ........+.+.+.+.
T Consensus         5 ~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (222)
T PRK10826          5 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDTLGLRIDQVVDLWYARQPWNGPSRQEVVQRIIARVI   84 (222)
T ss_pred             ccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHhhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999977654 455667777666666555554432 2233344444444443


Q ss_pred             hh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      .. .....++||+.++|+.|+++|++++++||+....++..+ +.+++..+|+.+++++..+..||+|+.++.+++++|+
T Consensus        85 ~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~~  163 (222)
T PRK10826         85 SLIEETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVL-TMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAKLGV  163 (222)
T ss_pred             HHHhcCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HhCcchhcccEEEEcccCCCCCCCHHHHHHHHHHcCC
Confidence            33 235789999999999999999999999999999999888 8899999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-cccccchhccccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLRP  216 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~~~~~~~~v~~~~~l~~  216 (260)
                      +|++|++|||+.+|+.+|+.+|+.+++++.+....+ ....++.++.++.++..
T Consensus       164 ~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~dl~~  217 (222)
T PRK10826        164 DPLTCVALEDSFNGMIAAKAARMRSIVVPAPEQQNDPRWALADVKLESLTELTA  217 (222)
T ss_pred             CHHHeEEEcCChhhHHHHHHcCCEEEEecCCccCchhhhhhhheeccCHHHHhh
Confidence            999999999999999999999999999988544332 24568889999998754

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=100.00  E-value=3.8e-32  Score=212.37  Aligned_cols=206  Identities=23%  Similarity=0.336  Sum_probs=167.7

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+|+||+||||+|+...+..++.+++++++.. .+.+.+....|.+..+.+..+    . +...+.+...+...+...
T Consensus         2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~   76 (214)
T PRK13288          2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKI----D-ESKVEEMITTYREFNHEH   76 (214)
T ss_pred             CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhc----C-HHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999998754 456667777787765544432    1 112233333333333322


Q ss_pred             h-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        87 ~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      . ....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++....||+|+.+..++++++++|
T Consensus        77 ~~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~  155 (214)
T PRK13288         77 HDELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGL-KLTGLDEFFDVVITLDDVEHAKPDPEPVLKALELLGAKP  155 (214)
T ss_pred             hhhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhceeEEEecCcCCCCCCCcHHHHHHHHHcCCCH
Confidence            2 34679999999999999999999999999999999889 889999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++++||||+++|+.+|+++|+.++++.++..... . ...++++++++.++.+.+.
T Consensus       156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~~g~~~~~~l~~~~~~~~i~~~~~l~~~i~  211 (214)
T PRK13288        156 EEALMVGDNHHDILAGKNAGTKTAGVAWTIKGREYLEQYKPDFMLDKMSDLLAIVG  211 (214)
T ss_pred             HHEEEECCCHHHHHHHHHCCCeEEEEcCCCCCHHHHhhcCcCEEECCHHHHHHHHh
Confidence            9999999999999999999999999988643332 2 3568899999999877653

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=100.00  E-value=6e-32  Score=215.33  Aligned_cols=206  Identities=26%  Similarity=0.345  Sum_probs=163.6

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCC----CCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK----EWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY   80 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
                      +.++|+|+||+||||+|+...+..++.+++++++.    +.+.+.+ ....|.+..+.+..++.. ... ...++...+.
T Consensus        19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~-~~~~~~~~~~   96 (248)
T PLN02770         19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVENIAGKHNEDIALGLFPD-DLE-RGLKFTDDKE   96 (248)
T ss_pred             cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHcCCCCHHHHHHHHcCc-chh-hHHHHHHHHH
Confidence            35689999999999999999999999999999863    3344433 355677665555444321 111 0112222333


Q ss_pred             HHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           81 SMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        81 ~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ..+.... ....++||+.++|++|+++|++++|+||+....++..+ +.+++..+|+.++++++++..||+|+.|..+++
T Consensus        97 ~~y~~~~~~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~  175 (248)
T PLN02770         97 ALFRKLASEQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMI-SLLGLSDFFQAVIIGSECEHAKPHPDPYLKALE  175 (248)
T ss_pred             HHHHHHHHhcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCChhhCcEEEecCcCCCCCCChHHHHHHHH
Confidence            3343332 35789999999999999999999999999999999999 889999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhccccccc
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDL  214 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l  214 (260)
                      +++++|++++||||++.|+++|+++|+.++++.++...... ...++++++++.++
T Consensus       176 ~~~~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~g~~~~~l~~~~a~~vi~~~~e~  231 (248)
T PLN02770        176 VLKVSKDHTFVFEDSVSGIKAGVAAGMPVVGLTTRNPESLLMEAKPTFLIKDYEDP  231 (248)
T ss_pred             HhCCChhHEEEEcCCHHHHHHHHHCCCEEEEEeCCCCHHHHhhcCCCEEeccchhh
Confidence            99999999999999999999999999999999886433323 45788999999983

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=100.00  E-value=6.1e-32  Score=212.21  Aligned_cols=208  Identities=24%  Similarity=0.368  Sum_probs=171.8

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh-ccCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCA-KHEFVNEVYSMFSDH   86 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   86 (260)
                      +|+|+||+||||+|+...+..++.+++++++.+.+...... +.|....+.++.++...+.+.. .+++...+.+.+...
T Consensus         1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (220)
T TIGR03351         1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTPEEVQSAWMGQSKIEAIRALLALDGADEAEAQAAFADFEERLAEA   80 (220)
T ss_pred             CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCHHHHHHhhcCCCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999998777666655 7788888888888776664311 223334444444443


Q ss_pred             hc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc--cccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        87 ~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~--~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      +.  ..+++||+.++|+.|+++|++++++||+....+...+ +.+++.  .+|+.++++++....||+|+.+..++++++
T Consensus        81 ~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~~~~~  159 (220)
T TIGR03351        81 YDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLL-EKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAMELTG  159 (220)
T ss_pred             hcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHHHHcC
Confidence            32  4689999999999999999999999999999999999 888998  999999999999899999999999999999


Q ss_pred             CC-CCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc--ccccchhcccccccccc
Q 024956          163 ME-PSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR--YTAADEVINSLLDLRPE  217 (260)
Q Consensus       163 ~~-~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~  217 (260)
                      +. |++++||||+++|+.+|+++|+.+ +++.++......  ...++++++++.++...
T Consensus       160 ~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~g~~~~~~~~~~~~~~~i~~~~~l~~~  218 (220)
T TIGR03351       160 VQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLTGAHDAEELSRHPHTHVLDSVADLPAL  218 (220)
T ss_pred             CCChhHeEEeCCCHHHHHHHHHCCCCeEEEEecCCCcHHHHhhcCCceeecCHHHHHHh
Confidence            97 799999999999999999999999 888775433322  34678888998887654

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=100.00  E-value=9.9e-32  Score=210.05  Aligned_cols=205  Identities=22%  Similarity=0.302  Sum_probs=168.7

Q ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHH---HHHHHHHHHHHhhh
Q 024956           12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH---EFVNEVYSMFSDHL   87 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   87 (260)
                      |+||+||||+|+...+..++..++++++.. .+.+.+....|......++.++..++...+.+   ++.+.+...+....
T Consensus         1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T TIGR01449         1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGFIGNGVPVLMERVLAWAGQEPDAQRVAELRKLFDRHYEEVA   80 (213)
T ss_pred             CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhcccHHHHHHHHhhccccccChHHHHHHHHHHHHHHHHhc
Confidence            689999999999988889999999999875 45566667778777777777776665543332   22333344443333


Q ss_pred             c-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           88 C-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        88 ~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      . ...++||+.++|+.|+++|++++++|++....++..+ +++++..+|+.++++++.+..||+|+.+..++++++++|+
T Consensus        81 ~~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~  159 (213)
T TIGR01449        81 GELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLL-ELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ  159 (213)
T ss_pred             cccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence            2 4689999999999999999999999999999999888 8899999999999999999999999999999999999999


Q ss_pred             cEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccc
Q 024956          167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE  217 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~  217 (260)
                      +++||||+.+|+.+|+++|+.++++.++......  ...++++++++.++...
T Consensus       160 ~~~~igDs~~d~~aa~~aG~~~i~v~~g~~~~~~l~~~~a~~~i~~~~~l~~~  212 (213)
T TIGR01449       160 QMVYVGDSRVDIQAARAAGCPSVLLTYGYRYGEAIDLLPPDVLYDSLNELPPL  212 (213)
T ss_pred             HeEEeCCCHHHHHHHHHCCCeEEEEccCCCCCcchhhcCCCeEeCCHHHHHhh
Confidence            9999999999999999999999999886543322  35688999999987653

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=100.00  E-value=8.2e-32  Score=212.25  Aligned_cols=210  Identities=21%  Similarity=0.348  Sum_probs=167.2

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      .++|+|+||+||||+|+...+..++..+++++|.+ .+.+......|.+....++.+..... ....+++.+.+.+.+..
T Consensus        10 ~~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   88 (229)
T PRK13226         10 RFPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAMLAVAFPELD-AAARDALIPEFLQRYEA   88 (229)
T ss_pred             ccCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999875 45555555666554444333322111 01123444455555544


Q ss_pred             hh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        86 ~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      .. ....++||+.++|++|+++|++++++||+........+ +.+++..+|+.+++++..+..||+|+.+..+++++|++
T Consensus        89 ~~~~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~l~~~  167 (229)
T PRK13226         89 LIGTQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLIL-PQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAERIGVA  167 (229)
T ss_pred             hhhhcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCchhcccEEEecCcCCCCCCCHHHHHHHHHHhCCC
Confidence            33 34789999999999999999999999999998888788 88999999999999988889999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc--c-ccccchhccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--R-YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~--~-~~~~~~~v~~~~~l~~~~  218 (260)
                      |++++||||+.+|+.+|+++|+.++++.++.....  . ...++++++++.+|.+.+
T Consensus       168 p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~~  224 (229)
T PRK13226        168 PTDCVYVGDDERDILAARAAGMPSVAALWGYRLHDDDPLAWQADVLVEQPQLLWNPA  224 (229)
T ss_pred             hhhEEEeCCCHHHHHHHHHCCCcEEEEeecCCCCCcChhhcCCCeeeCCHHHHHHHh
Confidence            99999999999999999999999999988654221  2 356899999999986654

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=100.00  E-value=9.7e-32  Score=214.32  Aligned_cols=210  Identities=22%  Similarity=0.296  Sum_probs=166.9

Q ss_pred             ccccEEEEecCCccccCH-HHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMF   83 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   83 (260)
                      ..+|+|+|||||||+|+. ..+..++.++++++|...+.... ....|.+....++.++... ... ...++...+...+
T Consensus        22 ~~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~~~G~~~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~  100 (260)
T PLN03243         22 CGWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKRAEGMKNEQAISEVLCWS-RDFLQMKRLAIRKEDLY  100 (260)
T ss_pred             CCceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhccC-CCHHHHHHHHHHHHHHH
Confidence            358999999999999995 56677999999999987765544 5678888777766654321 110 1122233333333


Q ss_pred             Hhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           84 SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        84 ~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .... ....++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++++++...||+|+.|..++++++
T Consensus       101 ~~~~~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l-~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~l~  179 (260)
T PLN03243        101 EYMQGGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAI-EAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAERLG  179 (260)
T ss_pred             HHHHccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHH-HHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHHhC
Confidence            2211 24678999999999999999999999999999999888 889999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|++++||||+..|+.+|+.+|+.++++.. .........++++++++.++.....
T Consensus       180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g-~~~~~~l~~ad~vi~~~~el~~~~~  235 (260)
T PLN03243        180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG-KHPVYELSAGDLVVRRLDDLSVVDL  235 (260)
T ss_pred             CChHHeEEEcCCHHHHHHHHHcCCEEEEEec-CCchhhhccCCEEeCCHHHHHHHHH
Confidence            9999999999999999999999999999974 3333334468889999999876654

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=100.00  E-value=2e-31  Score=213.43  Aligned_cols=210  Identities=18%  Similarity=0.242  Sum_probs=164.5

Q ss_pred             cccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHH----------HHHHhCCCCCHHH--
Q 024956            8 LMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI----------IVEDYGLPCAKHE--   74 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----------~~~~~~~~~~~~~--   74 (260)
                      ++|+|+||+||||+|+.. .+..++.++++++|.+.+.+.+....|.+....++.          +.+.++.....+.  
T Consensus         1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (253)
T TIGR01422         1 KIEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQITLEEARGPMGLGKWDHIRALLKMPAVAERWRAKFGRLPTEADIE   80 (253)
T ss_pred             CceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCccHHHHHHhcCccHHHHHHHHhcCHHHHHHHHHHhCCCCCHHHHH
Confidence            368999999999999854 346788899999998777776766777665443332          3344554433322  


Q ss_pred             -HHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCCh
Q 024956           75 -FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSP  151 (260)
Q Consensus        75 -~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~~  151 (260)
                       +...+...+.... ....++||+.++|+.|+++|++++|+||+....++..+ +.+|+..+| +.++++++.+..||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l-~~~gl~~~f~d~ii~~~~~~~~KP~p  159 (253)
T TIGR01422        81 AIYEAFEPLQLAKLAEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA-PEAALQGYRPDYNVTTDDVPAGRPAP  159 (253)
T ss_pred             HHHHHHHHHHHHHHHhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HHHHhcCCCCceEEccccCCCCCCCH
Confidence             2223333322222 35789999999999999999999999999999999888 888999886 8999999999999999


Q ss_pred             HHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------ccc-ccccc
Q 024956          152 DIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAAD  205 (260)
Q Consensus       152 ~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~-~~~~~  205 (260)
                      +.+..+++++++. |++++||||+++|+.+|+++|+.+|++.++...                        ... ...++
T Consensus       160 ~~~~~a~~~l~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  239 (253)
T TIGR01422       160 WMALKNAIELGVYDVAACVKVGDTVPDIEEGRNAGMWTVGLILSSNELGLSEEEYRALDPAELEARRAEATARLKAAGAH  239 (253)
T ss_pred             HHHHHHHHHcCCCCchheEEECCcHHHHHHHHHCCCeEEEEecCCcccCCCHHHHHhCCHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999995 999999999999999999999999999886542                        122 45689


Q ss_pred             hhccccccccccc
Q 024956          206 EVINSLLDLRPEK  218 (260)
Q Consensus       206 ~~v~~~~~l~~~~  218 (260)
                      ++++++.++.+.+
T Consensus       240 ~v~~~~~el~~~~  252 (253)
T TIGR01422       240 YVIDTLAELPAVI  252 (253)
T ss_pred             EehhcHHHHHHhh
Confidence            9999999986553

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.98  E-value=6.6e-31  Score=216.48  Aligned_cols=209  Identities=24%  Similarity=0.280  Sum_probs=169.6

Q ss_pred             ccccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChh-hhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      ...++|||||||||+|+.. .+..++.++++++|...... ......|.+..+.++.++.........+++.+.+.+.+.
T Consensus       129 ~~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~~~G~~~~~~l~~ll~~~~~~~~~e~l~~~~~~~y~  208 (381)
T PLN02575        129 CGWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRRVEGMKNEQAISEVLCWSRDPAELRRMATRKEEIYQ  208 (381)
T ss_pred             CCCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            3679999999999999976 55578999999999876555 346788988887777765432211112334444444444


Q ss_pred             hhhc-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      .... ...++||+.++|+.|+++|++++|+||+....++..+ +.+|+..+|+.++++++....||+|+.|..+++++|+
T Consensus       209 ~~~~~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L-~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~lgl  287 (381)
T PLN02575        209 ALQGGIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAI-GSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQLLNF  287 (381)
T ss_pred             HHhccCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHHcCC
Confidence            3332 4678999999999999999999999999999999999 8899999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      .|++|+||||+..|+++|+++|+.+|++.++.... ....++++++++.||...
T Consensus       288 ~Peecl~IGDS~~DIeAAk~AGm~~IgV~~~~~~~-~l~~Ad~iI~s~~EL~~~  340 (381)
T PLN02575        288 IPERCIVFGNSNQTVEAAHDARMKCVAVASKHPIY-ELGAADLVVRRLDELSIV  340 (381)
T ss_pred             CcccEEEEcCCHHHHHHHHHcCCEEEEECCCCChh-HhcCCCEEECCHHHHHHH
Confidence            99999999999999999999999999998743222 234588899999998543

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.98  E-value=4.7e-31  Score=212.69  Aligned_cols=213  Identities=19%  Similarity=0.246  Sum_probs=165.1

Q ss_pred             cccccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHH----------HHHhCCCCCHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAII----------VEDYGLPCAKHE   74 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~~~~~~~~~   74 (260)
                      |+++|+|+||+||||+|+.. .+..++.++++++|.+.+.+......|.+....++.+          ...++.....+.
T Consensus         1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~   80 (267)
T PRK13478          1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEITLEEARGPMGLGKWDHIRALLKMPRVAARWQAVFGRLPTEAD   80 (267)
T ss_pred             CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHhcHHHHHHHHHHhCCCCCHHH
Confidence            45689999999999999853 3357889999999987766666667776654433332          334454333222


Q ss_pred             ---HHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCC
Q 024956           75 ---FVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKP  149 (260)
Q Consensus        75 ---~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp  149 (260)
                         +...+...+.... ....++||+.++|+.|+++|++++|+||+....+...+ +.+++..+| +.++++++.+..||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l-~~~~l~~~~~d~i~~~~~~~~~KP  159 (267)
T PRK13478         81 VDALYAAFEPLQIAKLADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVV-PLAAAQGYRPDHVVTTDDVPAGRP  159 (267)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHHhhcCCCceEEEcCCcCCCCCC
Confidence               2233333333222 35789999999999999999999999999999888888 777777764 88999999999999


Q ss_pred             ChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------ccc-ccc
Q 024956          150 SPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTA  203 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~-~~~  203 (260)
                      +|+.+..+++++++. +++++||||+++|+.+|+++|+.+|++.+++..                        ... ...
T Consensus       160 ~p~~~~~a~~~l~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  239 (267)
T PRK13478        160 YPWMALKNAIELGVYDVAACVKVDDTVPGIEEGLNAGMWTVGVILSGNELGLSEEEYQALSAAELAARRERARARLRAAG  239 (267)
T ss_pred             ChHHHHHHHHHcCCCCCcceEEEcCcHHHHHHHHHCCCEEEEEccCcccccCCHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence            999999999999996 699999999999999999999999999986542                        122 456


Q ss_pred             cchhcccccccccccc
Q 024956          204 ADEVINSLLDLRPEKW  219 (260)
Q Consensus       204 ~~~~v~~~~~l~~~~~  219 (260)
                      ++++++++.++...+.
T Consensus       240 a~~vi~~~~~l~~~l~  255 (267)
T PRK13478        240 AHYVIDTIADLPAVIA  255 (267)
T ss_pred             CCeehhhHHHHHHHHH
Confidence            8999999999887653

>PRK11587 putative phosphatase; Provisional

Probab=99.98  E-value=1.1e-30  Score=204.48  Aligned_cols=202  Identities=27%  Similarity=0.401  Sum_probs=157.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH--HHh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM--FSD   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   85 (260)
                      ++|+|+||+||||+|+...+..++.++++++|.+. .+......|.+....++.+...    ...+++.+.+...  +..
T Consensus         2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~   76 (218)
T PRK11587          2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP-DEVLNFIHGKQAITSLRHFMAG----ASEAEIQAEFTRLEQIEA   76 (218)
T ss_pred             CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH-HHHHHHHcCCCHHHHHHHHhcc----CCcHHHHHHHHHHHHHHH
Confidence            57999999999999999999999999999999753 2223344576666555544321    1223333333321  111


Q ss_pred             -hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           86 -HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        86 -~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                       ......++||+.++|+.|+++|++++++||+........+ +..++ .+|+.++++++....||+|+.+..+++++|++
T Consensus        77 ~~~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l-~~~~l-~~~~~i~~~~~~~~~KP~p~~~~~~~~~~g~~  154 (218)
T PRK11587         77 TDTEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH-KAAGL-PAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA  154 (218)
T ss_pred             hhhcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH-HhcCC-CCccEEEEHHHhcCCCCCcHHHHHHHHHcCCC
Confidence             2245789999999999999999999999999888777667 77777 45788888888888999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      |++++||||+..|+.+|+++|+.+++++++... .....++++++++.+|...
T Consensus       155 p~~~l~igDs~~di~aA~~aG~~~i~v~~~~~~-~~~~~~~~~~~~~~el~~~  206 (218)
T PRK11587        155 PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADT-PRLDEVDLVLHSLEQLTVT  206 (218)
T ss_pred             cccEEEEecchhhhHHHHHCCCEEEEECCCCch-hhhccCCEEecchhheeEE
Confidence            999999999999999999999999999875432 2345688899999987533

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.98  E-value=9.5e-31  Score=205.53  Aligned_cols=208  Identities=23%  Similarity=0.350  Sum_probs=170.0

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhh-hhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      +++|+|+||+||||+|+...+..++.++++++|.+.+.++ .....|.+....++.+...++.+.+.+++...+.+.+..
T Consensus         2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (221)
T PRK10563          2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLSLEEVFKRFKGVKLYEIIDIISKEHGVTLAKAELEPVYRAEVAR   81 (221)
T ss_pred             CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999998888999999999998766543 456677778888888888888776556665555544433


Q ss_pred             h-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc-eEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           86 H-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        86 ~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~-~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      . .....++||+.++|+.|+   ++++++||+....+...+ +.+++..+|+ .++++++.+..||+|+.|..+++++++
T Consensus        82 ~~~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l-~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~  157 (221)
T PRK10563         82 LFDSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSL-GKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAEAMNV  157 (221)
T ss_pred             HHHccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHH-HhcChHHhCcceEeeHHhcCCCCCChHHHHHHHHHcCC
Confidence            2 245789999999999993   899999999999898888 8899999996 677888888999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      +|++|+||||++.|+.+|+++|+.++++..+.........+..++.++.||...+
T Consensus       158 ~p~~~l~igDs~~di~aA~~aG~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  212 (221)
T PRK10563        158 NVENCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPLVTTFTDLAQLPELW  212 (221)
T ss_pred             CHHHeEEEeCcHhhHHHHHHCCCEEEEECCCCCCcchhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999763332223344566788888877654

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.97  E-value=3.1e-30  Score=197.70  Aligned_cols=185  Identities=28%  Similarity=0.454  Sum_probs=159.1

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      ||+++|+|+||+||||+|+...+..++.++++++|.+.+........|.+..+.++.+...++.....+++...+...+.
T Consensus         1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (188)
T PRK10725          1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFDEQAMVALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVK   80 (188)
T ss_pred             CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            56778999999999999999999999999999999877666777788888877778887777665555555555544444


Q ss_pred             hhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      ... ....++|+ .++|..|++. ++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.+..+++++++
T Consensus        81 ~~~~~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~  157 (188)
T PRK10725         81 SMLLDSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALL-AHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQLMGV  157 (188)
T ss_pred             HHHhccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHH-HhCCcHhHceEEEehhhccCCCCChHHHHHHHHHcCC
Confidence            332 34567885 6999999876 899999999999999899 8899999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~  192 (260)
                      +|++++||||+..|+++|+.+|+.+|.+.
T Consensus       158 ~~~~~l~igDs~~di~aA~~aG~~~i~~~  186 (188)
T PRK10725        158 QPTQCVVFEDADFGIQAARAAGMDAVDVR  186 (188)
T ss_pred             CHHHeEEEeccHhhHHHHHHCCCEEEeec
Confidence            99999999999999999999999999874

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=202.18  Aligned_cols=208  Identities=33%  Similarity=0.495  Sum_probs=170.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSD   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~   85 (260)
                      ++|+|||||||||+|+...+..+|.++++++|...+.+......|.........+.+......  ...............
T Consensus         1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T COG0637           1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEAL   80 (221)
T ss_pred             CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999998888877788877777777777665442  222222223333334


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .....++.||+.++|++|+++|+++++.|++.+..+...+ +..|+.++|+.+++++++..+||+|+.|..+++++|++|
T Consensus        81 ~~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L-~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P  159 (221)
T COG0637          81 ELEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVL-ARLGLLDYFDVIVTADDVARGKPAPDIYLLAAERLGVDP  159 (221)
T ss_pred             hhcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHH-HHccChhhcchhccHHHHhcCCCCCHHHHHHHHHcCCCh
Confidence            4456899999999999999999999999999999999899 999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc----ccccccchhccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRP  216 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~----~~~~~~~~~v~~~~~l~~  216 (260)
                      ++|+.|+|+++.+.+++++||.++.+..+....    .....++....++.++..
T Consensus       160 ~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  214 (221)
T COG0637         160 EECVVVEDSPAGIQAAKAAGMRVVGVPAGHDRPHLDPLDAHGADTVLLDLAELPA  214 (221)
T ss_pred             HHeEEEecchhHHHHHHHCCCEEEEecCCCCccccchhhhhhcchhhccHHHHHH
Confidence            999999999999999999999999998843321    113344555555555443

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.97  E-value=1.8e-30  Score=204.04  Aligned_cols=205  Identities=21%  Similarity=0.331  Sum_probs=149.1

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHH---HHHcCCCCChhhhhhcc-------CCCHHHHHHHHHHHhCCCCCHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGREKHKIV-------GKTPLEEAAIIVEDYGLPCAKHEFVNE   78 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (260)
                      +++|+||+||||+|+...+..++..+   +.+.+.+.+.+......       +........................+.
T Consensus         2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (221)
T TIGR02253         2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNVDFEEAYEELLKLIKEYGSNYPTHFDYLIRRLWEEYNPKLVAAF   81 (221)
T ss_pred             ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcCCHHHHHHHHHHHHHHhccccCcchHHHHHHHhhhcCHHHHHHH
Confidence            78999999999999987766665544   34556555544332211       110000111112222221112222222


Q ss_pred             HHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHH
Q 024956           79 VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA  158 (260)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l  158 (260)
                      ...........+.++||+.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.|..++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~  160 (221)
T TIGR02253        82 VYAYHKLKFAYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL-ERLGVRDFFDAVITSEEEGVEKPHPKIFYAAL  160 (221)
T ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH-HhCChHHhccEEEEeccCCCCCCCHHHHHHHH
Confidence            22222323345789999999999999999999999999998888888 88999999999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc---ccccccchhccccccc
Q 024956          159 KRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT---HRYTAADEVINSLLDL  214 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~---~~~~~~~~~v~~~~~l  214 (260)
                      ++++++|++++||||++ +|+.+|+++|+.++++.++....   .....++++++++.++
T Consensus       161 ~~~~~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el  220 (221)
T TIGR02253       161 KRLGVKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL  220 (221)
T ss_pred             HHcCCChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence            99999999999999998 89999999999999998854432   1234577888888775

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.97  E-value=3.4e-30  Score=207.52  Aligned_cols=210  Identities=25%  Similarity=0.311  Sum_probs=167.1

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHH----hCCC-CCHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVED----YGLP-CAKHEFVNEVY   80 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~   80 (260)
                      ..+|+|+||+||||+|+...+..++..++++++.+.. .+.+....+.+.......++..    .+++ ...+.+.+.+.
T Consensus        11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   90 (272)
T PRK13223         11 RLPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHWVGNGAPVLVRRALAGSIDHDGVDDELAEQALALFM   90 (272)
T ss_pred             ccCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhChhHHHHHHHHhcccccccCCCHHHHHHHHHHHH
Confidence            5689999999999999999999999999999998753 3445566676655555444321    1221 01122333333


Q ss_pred             HHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH
Q 024956           81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR  160 (260)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~  160 (260)
                      +.+........++||+.++|+.|+++|++++++||+....+...+ ..+++..+|+.+++++..+..||+|+.++.++++
T Consensus        91 ~~~~~~~~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l-~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~  169 (272)
T PRK13223         91 EAYADSHELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLL-DQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM  169 (272)
T ss_pred             HHHHhcCcCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHH-HHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence            333332334678999999999999999999999999998888888 8889999999999999888899999999999999


Q ss_pred             cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccc
Q 024956          161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPE  217 (260)
Q Consensus       161 l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~  217 (260)
                      +|++|++++||||+.+|+++|+.+|+.++++.++......  ...++++++++.+|...
T Consensus       170 ~g~~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~G~~~~~~l~~~~~~~vi~~l~el~~~  228 (272)
T PRK13223        170 AGVPPSQSLFVGDSRSDVLAAKAAGVQCVALSYGYNHGRPIAEESPALVIDDLRALLPG  228 (272)
T ss_pred             hCCChhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCchhhhhcCCCEEECCHHHHHHH
Confidence            9999999999999999999999999999999886543332  35789999999998755

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.97  E-value=5.5e-30  Score=198.88  Aligned_cols=199  Identities=24%  Similarity=0.309  Sum_probs=159.0

Q ss_pred             EEEecCCccccCHHHHHHHHHHHHHHc-CCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956           12 VILDLDGTLLNTDGMFSEVLKTFLVKY-GKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK   89 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (260)
                      |+||+||||+|+...+..++.+++++. +.+ .+.+.+....|......++    ..+.+.  .. ...+..........
T Consensus         1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~--~~-~~~~~~~~~~~~~~   73 (205)
T TIGR01454         1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRHLGRYFPDIMR----IMGLPL--EM-EEPFVRESYRLAGE   73 (205)
T ss_pred             CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHhCccHHHHHH----HcCCCH--HH-HHHHHHHHHHhhcc
Confidence            689999999999999999999999874 653 4555566666765544433    334331  11 11111111122346


Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      ..++||+.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+++.+..++++++++|++++
T Consensus        74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~l  152 (205)
T TIGR01454        74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLL-EALGLLPLFDHVIGSDEVPRPKPAPDIVREALRLLDVPPEDAV  152 (205)
T ss_pred             cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHcCChhheeeEEecCcCCCCCCChHHHHHHHHHcCCChhheE
Confidence            789999999999999999999999999999998888 8899999999999999888999999999999999999999999


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      ||||+.+|+.+|+++|+.++.+.++......  ...++++++++.++...+
T Consensus       153 ~igD~~~Di~aA~~~Gi~~i~~~~g~~~~~~l~~~~~~~~~~~~~~l~~~~  203 (205)
T TIGR01454       153 MVGDAVTDLASARAAGTATVAALWGEGDAGELLAARPDFLLRKPQSLLALC  203 (205)
T ss_pred             EEcCCHHHHHHHHHcCCeEEEEEecCCChhhhhhcCCCeeeCCHHHHHHHh
Confidence            9999999999999999999999987544332  456889999999886543

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.97  E-value=2e-29  Score=198.85  Aligned_cols=212  Identities=22%  Similarity=0.297  Sum_probs=171.1

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC-ChhhhhhccCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSM   82 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   82 (260)
                      +++++|+||+||||+|+...+..++..++++++.+. +...+....+......++..+...+...+.++   ....+.+.
T Consensus         4 ~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (226)
T PRK13222          4 MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTWVGNGADVLVERALTWAGREPDEELLEKLRELFDRH   83 (226)
T ss_pred             CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence            468999999999999998888889999999988753 45556667777776666666554433333222   23334444


Q ss_pred             HHhhhc-cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           83 FSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      +..... ...++||+.++++.|++.|++++++||+....+...+ +.+++..+|+.+++++..+..||+|+.++.+++++
T Consensus        84 ~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~  162 (226)
T PRK13222         84 YAENVAGGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLL-EALGIADYFSVVIGGDSLPNKKPDPAPLLLACEKL  162 (226)
T ss_pred             HHHhccccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCccCccEEEcCCCCCCCCcChHHHHHHHHHc
Confidence            433332 4789999999999999999999999999999888888 88899999999999998889999999999999999


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      +++++++++|||+.+|+++|+.+|+.++++.++..... . ...++++++++.+|...+.
T Consensus       163 ~~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~~~~~l~~~l~  222 (226)
T PRK13222        163 GLDPEEMLFVGDSRNDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVIDHFAELLPLLG  222 (226)
T ss_pred             CCChhheEEECCCHHHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999999998654222 2 4568899999999877653

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.97  E-value=5.6e-30  Score=205.44  Aligned_cols=205  Identities=19%  Similarity=0.288  Sum_probs=164.1

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (260)
                      +++|+|+||+||||+|+...+..++.++++++|.+ .+.+.+....+......    ++.++... ..+++...+.+.+.
T Consensus        60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i----~~~~~~~~~~~~~~~~~~~~~~~  135 (273)
T PRK13225         60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTI----VRRAGLSPWQQARLLQRVQRQLG  135 (273)
T ss_pred             hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHH----HHHcCCCHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999975 44445556666544333    33344321 12334445555555


Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ......+++||+.++|+.|+++|++++|+||+....+...+ +.+|+..+|+.+++.+...   ++++.+..++++++++
T Consensus       136 ~~~~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L-~~~gl~~~F~~vi~~~~~~---~k~~~~~~~l~~~~~~  211 (273)
T PRK13225        136 DCLPALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFL-QRQGLRSLFSVVQAGTPIL---SKRRALSQLVAREGWQ  211 (273)
T ss_pred             hhcccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCChhheEEEEecCCCC---CCHHHHHHHHHHhCcC
Confidence            44556789999999999999999999999999999999999 8899999999988776542   4568999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      |++++||||+.+|+.+|+++|+.++++.++..... . ...++++++++.+|.+.+.
T Consensus       212 p~~~l~IGDs~~Di~aA~~AG~~~I~v~~g~~~~~~l~~~~ad~~i~~~~eL~~~~~  268 (273)
T PRK13225        212 PAAVMYVGDETRDVEAARQVGLIAVAVTWGFNDRQSLVAACPDWLLETPSDLLQAVT  268 (273)
T ss_pred             hhHEEEECCCHHHHHHHHHCCCeEEEEecCCCCHHHHHHCCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999998655443 2 4578999999999987654

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.97  E-value=8e-29  Score=189.42  Aligned_cols=178  Identities=30%  Similarity=0.444  Sum_probs=149.2

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHHhhh
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMFSDHL   87 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~   87 (260)
                      +|+||+||||+|+...+..++.++++.++.+.+........+.+..+.++.++...+...+.+..   .+.+.+.+...+
T Consensus         1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR01990         1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFDEEFNESLKGVSREDSLERILDLGGKKYSEEEKEELAERKNDYYVELL   80 (185)
T ss_pred             CeEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHhcCCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999887766667778888888888888887765444332   223223333222


Q ss_pred             ---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           88 ---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        88 ---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                         ....++||+.++|+.|+++|++++++|++..  ....+ +.+++..+|+.++++++.+..||+|+.|..++++++++
T Consensus        81 ~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~~~~~~  157 (185)
T TIGR01990        81 KELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVL-EKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAEGLGVS  157 (185)
T ss_pred             HhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHH-HhcCcHhhCcEEEehhhcCCCCCChHHHHHHHHHcCCC
Confidence               2347899999999999999999999998653  34567 88999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      |++++||||+.+|+.+|+.+|+.+|.+
T Consensus       158 ~~~~v~vgD~~~di~aA~~aG~~~i~v  184 (185)
T TIGR01990       158 PSECIGIEDAQAGIEAIKAAGMFAVGV  184 (185)
T ss_pred             HHHeEEEecCHHHHHHHHHcCCEEEec
Confidence            999999999999999999999999986

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.97  E-value=4.7e-29  Score=196.42  Aligned_cols=203  Identities=21%  Similarity=0.264  Sum_probs=155.0

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc------------CC-CHH----HHHHHHHHHhCCCCC
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------GK-TPL----EEAAIIVEDYGLPCA   71 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~-~~~----~~~~~~~~~~~~~~~   71 (260)
                      +|+|+||+||||+|+...+..++.+++++++...+......+.            +. ...    ..+..+++.++.+..
T Consensus         1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T TIGR02254         1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTEDMFAQYKEINQGLWRAYEEGKITKDEVVNTRFSALLKEYNTEAD   80 (224)
T ss_pred             CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccHHHHHHHHHHhHHHHHHHHcCCCCHHHHHHHHHHHHHHHhCCCCc
Confidence            5899999999999999888888898888888665433221111            11 011    112233444443322


Q ss_pred             HHHHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCC
Q 024956           72 KHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS  150 (260)
Q Consensus        72 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~  150 (260)
                      .+.    +...+.... ...+++||+.++|++|++. ++++++||+....+...+ +.+++..+|+.++++++.+..||+
T Consensus        81 ~~~----~~~~~~~~~~~~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l-~~~~l~~~fd~i~~~~~~~~~KP~  154 (224)
T TIGR02254        81 EAL----LNQKYLRFLEEGHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRL-RKSGLFPFFDDIFVSEDAGIQKPD  154 (224)
T ss_pred             HHH----HHHHHHHHHhccCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHH-HHCCcHhhcCEEEEcCccCCCCCC
Confidence            112    222222222 2468899999999999999 999999999999888888 889999999999999999999999


Q ss_pred             hHHHHHHHHHc-CCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956          151 PDIFLEAAKRL-NMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       151 ~~~~~~~l~~l-~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      |+++..+++++ +++|++++||||++ +|+.+|+.+|+.+++++++.........++++++++.+|...
T Consensus       155 ~~~~~~~~~~~~~~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~el~~~  223 (224)
T TIGR02254       155 KEIFNYALERMPKFSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPDDIIPTYEIRSLEELYEI  223 (224)
T ss_pred             HHHHHHHHHHhcCCCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCceEECCHHHHHhh
Confidence            99999999999 99999999999998 799999999999999987544333345678889998887654

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.97  E-value=1.2e-28  Score=188.41  Aligned_cols=180  Identities=30%  Similarity=0.497  Sum_probs=149.8

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHHh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHE---FVNEVYSMFSD   85 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   85 (260)
                      +|+|+||+||||+|+...+..++..++++++..++........|.+....+..++..++...+.++   +.+.+.+.+..
T Consensus         1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T TIGR02009         1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFDKQYNTSLGGLSREDILRAILKLRKPGLSLETIHQLAERKNELYRE   80 (185)
T ss_pred             CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCCHHHHHHcCCCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999987665445566777777888888877644433333   23333344433


Q ss_pred             hh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           86 HL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        86 ~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      ..  ....++||+.++|+.|+++|++++++|++  ..++..+ +.+++..+|+.++++++.+..||+|+.+..+++++++
T Consensus        81 ~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l-~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~~~~~  157 (185)
T TIGR02009        81 LLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL-AKLGLTDYFDAIVDADEVKEGKPHPETFLLAAELLGV  157 (185)
T ss_pred             HHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH-HHcChHHHCCEeeehhhCCCCCCChHHHHHHHHHcCC
Confidence            33  24789999999999999999999999998  5567777 8899999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      +|++++||||+..|+.+|+.+|+.++.+
T Consensus       158 ~~~~~v~IgD~~~di~aA~~~G~~~i~v  185 (185)
T TIGR02009       158 SPNECVVFEDALAGVQAARAAGMFAVAV  185 (185)
T ss_pred             CHHHeEEEeCcHhhHHHHHHCCCeEeeC
Confidence            9999999999999999999999998864

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK09449 dUMP phosphatase; Provisional

Probab=99.97  E-value=8.7e-29  Score=194.84  Aligned_cols=201  Identities=22%  Similarity=0.325  Sum_probs=147.3

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhc--cCCC-----------HHHH----HHHHHHHhCCCC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKT-----------PLEE----AAIIVEDYGLPC   70 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~-----------~~~~----~~~~~~~~~~~~   70 (260)
                      ++|+|+||+||||+|..  ...++.++++.+|...+.+.+..+  .+.+           ..+.    ++.+.+.++.. 
T Consensus         2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (224)
T PRK09449          2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFTAEDFQDYQAVNKPLWVDYQNGAITALQLQHTRFESWAEKLNVT-   78 (224)
T ss_pred             CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCC-
Confidence            58999999999999854  245777888888876554433322  1111           0000    11122222221 


Q ss_pred             CHHHHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCC
Q 024956           71 AKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP  149 (260)
Q Consensus        71 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp  149 (260)
                       ..++    .+.+...+ ....++||+.++|++|+ +|++++++||+........+ +.+|+..+|+.++++++.+..||
T Consensus        79 -~~~~----~~~~~~~~~~~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP  151 (224)
T PRK09449         79 -PGEL----NSAFLNAMAEICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRL-ERTGLRDYFDLLVISEQVGVAKP  151 (224)
T ss_pred             -HHHH----HHHHHHHHhhcCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHH-HhCChHHHcCEEEEECccCCCCC
Confidence             1222    22222222 24678999999999999 57999999999999888888 88999999999999999999999


Q ss_pred             ChHHHHHHHHHcCCCC-CcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          150 SPDIFLEAAKRLNMEP-SSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~-~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      +|++|..+++++|+.+ ++++||||+. +|+.+|+++|+.+++++++.........++++++++.+|...+
T Consensus       152 ~p~~~~~~~~~~~~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~i~~~~el~~~l  222 (224)
T PRK09449        152 DVAIFDYALEQMGNPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEGIAPTYQVSSLSELEQLL  222 (224)
T ss_pred             CHHHHHHHHHHcCCCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCCCCCeEEECCHHHHHHHH
Confidence            9999999999999854 7999999998 7999999999999999863222222335788999998887643

>PLN02811 hydrolase

Probab=99.96  E-value=6e-28  Score=189.26  Aligned_cols=202  Identities=40%  Similarity=0.671  Sum_probs=164.6

Q ss_pred             cCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHhhhccCCCC
Q 024956           16 LDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFVNEVYSMFSDHLCKVKAL   93 (260)
Q Consensus        16 ~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   93 (260)
                      |||||+|+...+..+|.+++++++...+.......+|.+....+..+....+++.  ..+.+.......+........++
T Consensus         1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   80 (220)
T PLN02811          1 MDGLLLDTEKFYTEVQEKILARYGKTFDWSLKAKMMGKKAIEAARIFVEESGLSDSLSPEDFLVEREAMLQDLFPTSDLM   80 (220)
T ss_pred             CCCcceecHHHHHHHHHHHHHHcCCCCCHHHHHHccCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence            6999999999999999999999998876666777889888888888888776642  33444444444444444567889


Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc--ccCCCCCChHHHHHHHHHcC---CCCCcE
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN---MEPSSS  168 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~--~~~~~kp~~~~~~~~l~~l~---~~~~~~  168 (260)
                      ||+.++|+.|+++|++++|+||.........+.+..++..+|+.+++++  +++..||+|+.|..++++++   ++|+++
T Consensus        81 ~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~~~  160 (220)
T PLN02811         81 PGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLAAARRFEDGPVDPGKV  160 (220)
T ss_pred             ccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcHHHHHHHHHhCCCCCCccce
Confidence            9999999999999999999999987655544424457788999999999  88889999999999999997   999999


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      +||||+..|+++|+++|+.+|++.++.........++++++++.++...
T Consensus       161 v~IgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~d~vi~~~~e~~~~  209 (220)
T PLN02811        161 LVFEDAPSGVEAAKNAGMSVVMVPDPRLDKSYCKGADQVLSSLLDFKPE  209 (220)
T ss_pred             EEEeccHhhHHHHHHCCCeEEEEeCCCCcHhhhhchhhHhcCHhhCCHH
Confidence            9999999999999999999999987543333345788999999886544

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.96  E-value=1.2e-28  Score=212.53  Aligned_cols=208  Identities=15%  Similarity=0.198  Sum_probs=165.1

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcC------CCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYG------KEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY   80 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
                      +|+++|+||+||||+|+...+..++.+++++++      ...+.+.+....|.+..+.++.+....+.. ..++....+.
T Consensus       239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~~~~~-~~~~~~~~~~  317 (459)
T PRK06698        239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYREIMGVPLPKVWEALLPDHSLE-IREQTDAYFL  317 (459)
T ss_pred             HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHcCCChHHHHHHHhhhcchh-HHHHHHHHHH
Confidence            457999999999999999999999999998874      122345667788888887777776654332 1122333333


Q ss_pred             HHHHhhh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHH
Q 024956           81 SMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAA  158 (260)
Q Consensus        81 ~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l  158 (260)
                      +.+....  ...+++||+.++|++|+++|++++|+||+....+...+ +.+++..+|+.++++++.. .||+|+.+..++
T Consensus       318 ~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l-~~~~l~~~f~~i~~~d~v~-~~~kP~~~~~al  395 (459)
T PRK06698        318 ERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIV-SYYDLDQWVTETFSIEQIN-SLNKSDLVKSIL  395 (459)
T ss_pred             HHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHH-HHCCcHhhcceeEecCCCC-CCCCcHHHHHHH
Confidence            3333322  24689999999999999999999999999999999999 8899999999999998764 467788999999


Q ss_pred             HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++++  |+++++|||+++|+.+|+++|+.++++.++.........++++++++.++...+.
T Consensus       396 ~~l~--~~~~v~VGDs~~Di~aAk~AG~~~I~v~~~~~~~~~~~~~d~~i~~l~el~~~l~  454 (459)
T PRK06698        396 NKYD--IKEAAVVGDRLSDINAAKDNGLIAIGCNFDFAQEDELAQADIVIDDLLELKGILS  454 (459)
T ss_pred             HhcC--cceEEEEeCCHHHHHHHHHCCCeEEEEeCCCCcccccCCCCEEeCCHHHHHHHHH
Confidence            8864  6899999999999999999999999998865444444568999999999877653

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.96  E-value=1.2e-27  Score=193.77  Aligned_cols=210  Identities=27%  Similarity=0.406  Sum_probs=153.3

Q ss_pred             ccccEEEEecCCccccCH-HHHHHHHHHHHHHcCC-CC--Chhhhhh--ccCCCHHHHHHHHHHHhCCC--------CCH
Q 024956            7 KLMSCVILDLDGTLLNTD-GMFSEVLKTFLVKYGK-EW--DGREKHK--IVGKTPLEEAAIIVEDYGLP--------CAK   72 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~-~~~~~~~~~~~~~~~~-~~--~~~~~~~--~~g~~~~~~~~~~~~~~~~~--------~~~   72 (260)
                      ..+++|+|||||||+|+. ..+..++.++++++|. ..  +.+.+..  ..|.+.....+.+ ...+..        .+.
T Consensus        38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~  116 (286)
T PLN02779         38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDELLNIGGGKERMTWYF-NENGWPTSTIEKAPKDE  116 (286)
T ss_pred             cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHccCCChHHHHHHH-HHcCCCccccccCCccc
Confidence            457999999999999999 9999999999999987 32  2222211  2454443333332 222221        111


Q ss_pred             ---HHHHH----HHHHHHHhhhc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc---cceEEe
Q 024956           73 ---HEFVN----EVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES---FSVIVG  140 (260)
Q Consensus        73 ---~~~~~----~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~---f~~i~~  140 (260)
                         ++..+    .....+...+.  .++++||+.++|+.|+++|++++|+||+....+...+ +..+...+   |+.+ +
T Consensus       117 e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l-~~~~~~~~~~~~~~v-~  194 (286)
T PLN02779        117 EERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIV-NTLLGPERAQGLDVF-A  194 (286)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhccccccCceEEE-e
Confidence               11222    22233333332  2589999999999999999999999999998888777 54432233   3444 7


Q ss_pred             ccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       141 ~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +++++..||+|+.|..++++++++|++++||||+.+|+.+|+++|+.+|++.++.........++++++++.++...-+
T Consensus       195 ~~~~~~~KP~p~~~~~a~~~~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g~~~~~~l~~ad~vi~~~~~l~~~~~  273 (286)
T PLN02779        195 GDDVPKKKPDPDIYNLAAETLGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSSYTADEDFSGADAVFDCLGDVPLEDF  273 (286)
T ss_pred             ccccCCCCCCHHHHHHHHHHhCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccCCccccccCCCcEEECChhhcchhhh
Confidence            7778889999999999999999999999999999999999999999999998865544334568999999999876543

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.96  E-value=8.2e-28  Score=185.72  Aligned_cols=179  Identities=18%  Similarity=0.322  Sum_probs=135.2

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh--------h-hhhhccCCC------HHHHHHHHHHHhCCCCCHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG--------R-EKHKIVGKT------PLEEAAIIVEDYGLPCAKH   73 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~g~~------~~~~~~~~~~~~~~~~~~~   73 (260)
                      +|+|+||+||||+|+... ...+.+.+...+.....        . ......|..      ....++.+++.++......
T Consensus         1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~   79 (198)
T TIGR01428         1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGEALSQLWRQKQLEYSWLRTLMGPYADFWDLTREALRYLLGRLGLEDDES   79 (198)
T ss_pred             CcEEEEeCCCcCccHHHH-HHHHHHHhCchHHHHHHHHHHHHHHHHHHHHccCCCcCHHHHHHHHHHHHHHHcCCCCCHH
Confidence            478999999999998764 33344433222111100        0 000111211      1244566677777653322


Q ss_pred             HHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH
Q 024956           74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI  153 (260)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~  153 (260)
                       ..+.    +.+.+....++|++.++|++|+++|++++++||+....+...+ +.+|+..+|+.++++++++..||+++.
T Consensus        80 -~~~~----~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~KP~~~~  153 (198)
T TIGR01428        80 -AADR----LAEAYLRLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLV-KHAGLDDPFDAVLSADAVRAYKPAPQV  153 (198)
T ss_pred             -HHHH----HHHHHhcCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHCCChhhhheeEehhhcCCCCCCHHH
Confidence             1222    2333445788999999999999999999999999999999888 889999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      |..++++++++|+++++|||+++|+.+|+.+|+.+|++++.
T Consensus       154 ~~~~~~~~~~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~  194 (198)
T TIGR01428       154 YQLALEALGVPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP  194 (198)
T ss_pred             HHHHHHHhCCChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence            99999999999999999999999999999999999999883

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.96  E-value=3.9e-27  Score=218.88  Aligned_cols=208  Identities=25%  Similarity=0.367  Sum_probs=174.2

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (260)
                      .++|+|+|||||||+|+...+..++.++++++|.+++.+.+....|....+.+..+...+++. .+.++..+.+.+.+..
T Consensus        73 ~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~it~e~~~~~~G~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  152 (1057)
T PLN02919         73 GKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEVTVEDFVPFMGTGEANFLGGVASVKGVKGFDPDAAKKRFFEIYLE  152 (1057)
T ss_pred             CCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999888777778888888777777766666543 2334444444444433


Q ss_pred             hhc---cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-cccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           86 HLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        86 ~~~---~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      .+.   ...++||+.++|++|+++|++++|+||.....++..+ +.+++. .+|+.+++++++...||+|+.|..+++++
T Consensus       153 ~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L-~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~~l  231 (1057)
T PLN02919        153 KYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANL-AAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAKIL  231 (1057)
T ss_pred             HhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-HHcCCChhHCCEEEECcccccCCCCHHHHHHHHHHc
Confidence            221   2347999999999999999999999999999999888 888996 78999999999999999999999999999


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhcccccccc
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR  215 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l~  215 (260)
                      +++|++++||||+..|+++|+++|+.+|++.++....+. ...++++++++.++.
T Consensus       232 gv~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~~~~~~L~~~~a~~vi~~l~el~  286 (1057)
T PLN02919        232 GVPTSECVVIEDALAGVQAARAAGMRCIAVTTTLSEEILKDAGPSLIRKDIGNIS  286 (1057)
T ss_pred             CcCcccEEEEcCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHCC
Confidence            999999999999999999999999999999986544333 456788999999974

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.96  E-value=1.4e-27  Score=189.25  Aligned_cols=205  Identities=16%  Similarity=0.191  Sum_probs=146.8

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCC------CChhhhhhccC------------C--CHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE------WDGREKHKIVG------------K--TPLEEAAIIVED   65 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~g------------~--~~~~~~~~~~~~   65 (260)
                      +.++|+|+||+||||+|+...+..+++++++..+..      +....+..+.+            .  .....++.+++.
T Consensus         7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   86 (238)
T PRK10748          7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQRLRQALREAEPEIYHDVTRWRWRAIEQAMLD   86 (238)
T ss_pred             CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHHHHHHHHHHhCchhhCcHHHHHHHHHHHHHHH
Confidence            456899999999999999888888777766544211      11111111000            0  012334556666


Q ss_pred             hCCCCCHHH-HHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956           66 YGLPCAKHE-FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~  144 (260)
                      ++++....+ ..+.....+........++||+.++|++|++. ++++++||++..     + +..|+..+|+.++++++.
T Consensus        87 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~-~~~gl~~~fd~i~~~~~~  159 (238)
T PRK10748         87 AGLSAEEASAGADAAMINFAKWRSRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----P-ELFGLGDYFEFVLRAGPH  159 (238)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----H-HHCCcHHhhceeEecccC
Confidence            666422211 11122222333334578999999999999976 999999998765     3 668999999999999999


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc----ccccccchhcccccccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~----~~~~~~~~~v~~~~~l~~~  217 (260)
                      +..||+|+.|..++++++++|++++||||++ .|+.+|+.+|+.+++++.+....    .....++..++++.||.+.
T Consensus       160 ~~~KP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~i~~l~el~~~  237 (238)
T PRK10748        160 GRSKPFSDMYHLAAEKLNVPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIEISRLASLTSL  237 (238)
T ss_pred             CcCCCcHHHHHHHHHHcCCChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEEECCHHHHHhh
Confidence            9999999999999999999999999999995 99999999999999998843221    1124577888888887654

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.96  E-value=8.3e-28  Score=181.93  Aligned_cols=175  Identities=31%  Similarity=0.531  Sum_probs=146.1

Q ss_pred             EEEecCCccccCHHHHHHHHHH-HHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 024956           12 VILDLDGTLLNTDGMFSEVLKT-FLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV   90 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (260)
                      |+||+||||+|+...+..++.. +.+.++...+...++...+....+.++.++...+..  ...+.+.+.+.  ......
T Consensus         1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~   76 (176)
T PF13419_consen    1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLEISAEELRELFGKSYEEALERLLERFGID--PEEIQELFREY--NLESKL   76 (176)
T ss_dssp             EEEESBTTTEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH--HHHHHHHHHHH--HHHGGE
T ss_pred             cEEECCCCcEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHhhhccchh--HHHHHHHhhhh--hhhhcc
Confidence            7999999999998877778776 477777665556666667777777777777766432  22222222222  113568


Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      +++|++.++|+.|+++|++++++||++...+...+ +.+|+..+|+.++++++.+..||+++.|+.++++++++|+++++
T Consensus        77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l-~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~~~~~  155 (176)
T PF13419_consen   77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVL-ERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEKLGIPPEEILF  155 (176)
T ss_dssp             EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHH-HHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHHHTSSGGGEEE
T ss_pred             chhhhhhhhhhhcccccceeEEeecCCcccccccc-cccccccccccccccchhhhhhhHHHHHHHHHHHcCCCcceEEE
Confidence            89999999999999999999999999999999899 88999999999999999999999999999999999999999999


Q ss_pred             EecCHhhHHHHHHcCCeEEEE
Q 024956          171 IEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      |||++.|+.+|+.+|+.+|++
T Consensus       156 vgD~~~d~~~A~~~G~~~i~v  176 (176)
T PF13419_consen  156 VGDSPSDVEAAKEAGIKTIWV  176 (176)
T ss_dssp             EESSHHHHHHHHHTTSEEEEE
T ss_pred             EeCCHHHHHHHHHcCCeEEeC
Confidence            999999999999999999975

...

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.96  E-value=2.7e-27  Score=185.58  Aligned_cols=107  Identities=15%  Similarity=0.232  Sum_probs=99.4

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.|..++++++++|++
T Consensus        90 ~~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~  168 (224)
T PRK14988         90 PRAVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKL-EHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER  168 (224)
T ss_pred             ccCCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH-HHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence            46789999999999999999999999999999988888 88999999999999999999999999999999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeE-EEEcCCC
Q 024956          168 SLVIEDSVIGVVAGKAAGMEV-VAVPSLP  195 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~  195 (260)
                      ++||||+++|+++|+.+|+.+ +++..+.
T Consensus       169 ~l~igDs~~di~aA~~aG~~~~~~v~~~~  197 (224)
T PRK14988        169 TLFIDDSEPILDAAAQFGIRYCLGVTNPD  197 (224)
T ss_pred             EEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence            999999999999999999985 6666643

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.95  E-value=5.4e-27  Score=181.86  Aligned_cols=178  Identities=28%  Similarity=0.351  Sum_probs=136.6

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh------------------ccCCCHHHH----HHHHHHHhC
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK------------------IVGKTPLEE----AAIIVEDYG   67 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~~~~~~----~~~~~~~~~   67 (260)
                      |+|+||+||||+|+...+..++.++++++|..........                  ..|.+..+.    ++..+...+
T Consensus         1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   80 (203)
T TIGR02252         1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVSPDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRAG   80 (203)
T ss_pred             CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            5899999999999988888899999999998765433210                  014343322    333334444


Q ss_pred             CCCCHHHHHHHHHHHHHhhh--ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC
Q 024956           68 LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR  145 (260)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~  145 (260)
                      .. ....+.+.+...+....  ....++||+.++|+.|+++|++++|+||+... ....+ +.+|+..+|+.+++++..+
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l-~~~~l~~~fd~i~~s~~~~  157 (203)
T TIGR02252        81 VP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLL-EALGLLEYFDFVVTSYEVG  157 (203)
T ss_pred             CC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHH-HHCCcHHhcceEEeecccC
Confidence            22 22233333333332221  23578999999999999999999999998765 46677 8889999999999999999


Q ss_pred             CCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEE
Q 024956          146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVA  190 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~  190 (260)
                      ..||+|+.|..++++++++|++++||||++ +|+.+|+++|+.+|+
T Consensus       158 ~~KP~~~~~~~~~~~~~~~~~~~~~IgD~~~~Di~~A~~aG~~~i~  203 (203)
T TIGR02252       158 AEKPDPKIFQEALERAGISPEEALHIGDSLRNDYQGARAAGWRALL  203 (203)
T ss_pred             CCCCCHHHHHHHHHHcCCChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence            999999999999999999999999999998 899999999999874

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=99.95  E-value=5e-26  Score=174.24  Aligned_cols=213  Identities=38%  Similarity=0.587  Sum_probs=187.1

Q ss_pred             CccccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 024956            2 AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS   81 (260)
Q Consensus         2 ~~~~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (260)
                      +..+...+.+++||+||||+|+...+.+.++.++.+++..++.......+|....+..+.++..+..+.+.+++..+..+
T Consensus         3 ~~~~~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~   82 (222)
T KOG2914|consen    3 SKSLSLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEE   82 (222)
T ss_pred             ccccccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence            33455678899999999999999999999999999999988888889999999999999999888899999999999999


Q ss_pred             HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC-CccccceEEe--ccccCCCCCChHHHHHHH
Q 024956           82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-WNESFSVIVG--SDEVRTGKPSPDIFLEAA  158 (260)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g-l~~~f~~i~~--~~~~~~~kp~~~~~~~~l  158 (260)
                      .+...+....+.||+.++++.|+.+|++++++|+.........+ ++++ +...|+.++.  ...+..+||+|++|..+.
T Consensus        83 ~~~~~~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~-~~~~~~~~~f~~~v~~d~~~v~~gKP~Pdi~l~A~  161 (222)
T KOG2914|consen   83 ILDRLFMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKI-SRHEDIFKNFSHVVLGDDPEVKNGKPDPDIYLKAA  161 (222)
T ss_pred             HHHHhccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHH-HHhhHHHHhcCCCeecCCccccCCCCCchHHHHHH
Confidence            99988888999999999999999999999999999888888788 5554 6677887776  567788999999999999


Q ss_pred             HHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          159 KRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       159 ~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      ++++.+| +.+++|+|+++.+++|+++|+.+|++....-.......++.+++++.+..
T Consensus       162 ~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~~~~~~~~~~~~~~~~~~~~~  219 (222)
T KOG2914|consen  162 KRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPDLSNLFSAGATLILESLEDFK  219 (222)
T ss_pred             HhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCCCcchhhhhccceecccccccC
Confidence            9999998 99999999999999999999999999883333334667777777776653

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.94  E-value=1.6e-25  Score=172.61  Aligned_cols=173  Identities=16%  Similarity=0.231  Sum_probs=133.0

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHHHcC-CCCChhhhhhccCCCHH--------HHHHHHHHHhC-----CCCCHHHH
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYG-KEWDGREKHKIVGKTPL--------EEAAIIVEDYG-----LPCAKHEF   75 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~--------~~~~~~~~~~~-----~~~~~~~~   75 (260)
                      ++|+||+||||+|+...+..++..++++++ ...+.+.+..+.|.+..        ..+...+....     .....+.+
T Consensus         1 ~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (197)
T TIGR01548         1 QALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTKLAGNANNDWQLTHRLVVDGLNSASSERVRDAPTLEAV   80 (197)
T ss_pred             CceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHHHccCccCchHHHHHHHHHhhhcccchhccCCccHHHH
Confidence            479999999999999999999999999987 56666666666654321        11111221110     11233444


Q ss_pred             HHHHHHHHHhhh----------ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC
Q 024956           76 VNEVYSMFSDHL----------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR  145 (260)
Q Consensus        76 ~~~~~~~~~~~~----------~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~  145 (260)
                      .+.+.+.+....          ...++.+++.++|+.|++.|++++|+||+....+...+ +.+|+..+|+.++++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~  159 (197)
T TIGR01548        81 TAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFL-TTHGLEILFPVQIWMEDCP  159 (197)
T ss_pred             HHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHH-HHcCchhhCCEEEeecCCC
Confidence            455555544211          12244556799999999999999999999999999999 8899999999999999887


Q ss_pred             CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956          146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      . ||+|+.+..+++++++++++++||||+++|+.+|+++
T Consensus       160 ~-KP~p~~~~~~~~~~~~~~~~~i~vGD~~~Di~aA~~a  197 (197)
T TIGR01548       160 P-KPNPEPLILAAKALGVEACHAAMVGDTVDDIITGRKA  197 (197)
T ss_pred             C-CcCHHHHHHHHHHhCcCcccEEEEeCCHHHHHHHHhC
Confidence            7 9999999999999999999999999999999999874

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.94  E-value=8e-26  Score=178.60  Aligned_cols=129  Identities=27%  Similarity=0.358  Sum_probs=114.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ..+++|++.+.|++++++ ++++++||+....+...+ +.+|+..+||.++.++..+..||++++|+.+++++|++|+++
T Consensus        97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l-~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~  174 (229)
T COG1011          97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKL-RQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA  174 (229)
T ss_pred             hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHH-HHcCChhhhheEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence            478999999999999999 999999999999899899 889999999999999999999999999999999999999999


Q ss_pred             EEEecCH-hhHHHHHHcCCeEEEEcCCCCcc-ccccccchhcccccccccccc
Q 024956          169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       169 ~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +||||++ ||+.+|+.+|+.+++++.+.... .....+++.+.++.++.+.+.
T Consensus       175 l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~~~~~~~~i~~l~~l~~~~~  227 (229)
T COG1011         175 LFVGDSLENDILGARALGMKTVWINRGGKPLPDALEAPDYEISSLAELLDLLE  227 (229)
T ss_pred             EEECCChhhhhHHHHhcCcEEEEECCCCCCCCCCccCCceEEcCHHHHHHHHh
Confidence            9999999 78899999999999999843322 122567888888888876653

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.94  E-value=1.5e-25  Score=174.73  Aligned_cols=179  Identities=21%  Similarity=0.217  Sum_probs=124.5

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-----
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF-----   83 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----   83 (260)
                      +|+|+||+||||+|+.. ....|...+...+.+ .........+.......+.+.  .+ ..+.+++.+.+.+.+     
T Consensus         2 ik~viFDldGtL~d~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~--~g-~~~~~~~~~~~~~~~~~~~~   76 (211)
T TIGR02247         2 IKAVIFDFGGVLLPSPG-VMRRWETERGLPGLK-DFIVTVNITGPDFNPWARTFE--RG-ELTAEAFDGLFRHEYGLRLG   76 (211)
T ss_pred             ceEEEEecCCceecCHH-HHHHHHHHcCCCCCc-cHHHHHHhcCCCCChHHHHHH--cC-CCCHHHHHHHHHHHhccccC
Confidence            57999999999999966 555565544444432 121222233332222222110  11 111222222222111     


Q ss_pred             ---------Hhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHh--HHHHHHhhcCCccccceEEeccccCCCCCCh
Q 024956           84 ---------SDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSP  151 (260)
Q Consensus        84 ---------~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~--~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~  151 (260)
                               .... ....++|++.++|++|+++|++++++||+....  ....+ ...++..+|+.++++++.+..||+|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~-~~~~l~~~fd~v~~s~~~~~~KP~p  155 (211)
T TIGR02247        77 HDVRIAPVFPLLYGENTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEAL-LPGDIMALFDAVVESCLEGLRKPDP  155 (211)
T ss_pred             CCcCchhhHHHHhccccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHh-hhhhhHhhCCEEEEeeecCCCCCCH
Confidence                     1111 246789999999999999999999999987543  22233 4467888999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.|..+++++|++|++++||||+..|+.+|+++|+.++++.+
T Consensus       156 ~~~~~~~~~~g~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~  197 (211)
T TIGR02247       156 RIYQLMLERLGVAPEECVFLDDLGSNLKPAAALGITTIKVSD  197 (211)
T ss_pred             HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999999999999999999999976

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.94  E-value=4e-25  Score=168.61  Aligned_cols=175  Identities=30%  Similarity=0.436  Sum_probs=124.9

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHH------HHHHHH
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNE------VYSMFS   84 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~   84 (260)
                      +|+||+||||+++.+.+.....   ................ .......+.+...++.......+...      ....+.
T Consensus         1 ~vlFDlDgtLv~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (183)
T TIGR01509         1 AILFDLDGVLVDTSSAIEKLVN---REEFPLVPDELGVSAV-GKLELALRRWKEKYGRTMSAEDFYLLYENADIKQLFYD   76 (183)
T ss_pred             CeeeccCCceechHHHHHHHHH---HHhCCCCcHHHHHHHH-HHHHHHhhccccccCCCCCcHHHHHHHhHHHHHHHHHH
Confidence            4899999999999876654211   1222112221111111 11222333333334444333332222      222333


Q ss_pred             hhhcc--CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           85 DHLCK--VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        85 ~~~~~--~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .....  .+++||+.++|+.|+++|++++++||+.... ...+ .++|+..+|+.++++++.+..||+|+.++.++++++
T Consensus        77 ~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~~~  154 (183)
T TIGR01509        77 AILDEEKLKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLV-QELGLRDLFDVVIFSGDVGRGKPDPDIYLLALKKLG  154 (183)
T ss_pred             HHHhccCCccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHH-HhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHHHcC
Confidence            32233  6899999999999999999999999999887 5454 558999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ++|+++++|||++.|+.+|+.+|+.+|++
T Consensus       155 ~~~~~~~~vgD~~~di~aA~~~G~~~i~v  183 (183)
T TIGR01509       155 LKPEECLFVDDSPAGIEAAKAAGMHTVLV  183 (183)
T ss_pred             CCcceEEEEcCCHHHHHHHHHcCCEEEeC
Confidence            99999999999999999999999999864

HAD subfamilies caused by an overly broad single model.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.93  E-value=1.3e-24  Score=167.91  Aligned_cols=179  Identities=15%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             cEEEEecCCccccCHHHHH-HHHHHHH----HHcC--CCCChhhhhhccC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 024956           10 SCVILDLDGTLLNTDGMFS-EVLKTFL----VKYG--KEWDGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYS   81 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~-~~~~~~~----~~~~--~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (260)
                      .+|+||+||||++.+.... ..+....    ..+.  ............| .+..+..+.+.+.++...+.+.+...+.+
T Consensus         1 ~~viFDldgvL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (199)
T PRK09456          1 MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLATLKKRFTMGEAFHQHERGEISDEAFAEALCHEMALSLSYEQFAHGWQA   80 (199)
T ss_pred             CEEEEeCCCccccCcHHHHHHHHHHhcCCCHHHHHHHHhcCcHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            3799999999999854221 1111110    0000  0000111112223 44556667788888776554444444433


Q ss_pred             HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      .+      ..++||+.++|++|+++|++++++||+........+....++..+|+.++++++++..||+|+.|+.+++++
T Consensus        81 ~~------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~~  154 (199)
T PRK09456         81 VF------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQAE  154 (199)
T ss_pred             HH------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHHHc
Confidence            22      357999999999999999999999999988766555233477889999999999999999999999999999


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      |++|++++||||+..|+.+|+++|+.++++..+
T Consensus       155 ~~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~  187 (199)
T PRK09456        155 GFSAADAVFFDDNADNIEAANALGITSILVTDK  187 (199)
T ss_pred             CCChhHeEEeCCCHHHHHHHHHcCCEEEEecCC
Confidence            999999999999999999999999999999773

>PHA02597 30

Probab=99.93  E-value=8.1e-25  Score=168.84  Aligned_cols=189  Identities=14%  Similarity=0.159  Sum_probs=129.5

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-h
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD-H   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   86 (260)
                      |+|+|+||+||||+|+.    .++.++++++|.+.  +.+....+.........   .++.  +.....+.+..+... .
T Consensus         1 m~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~   69 (197)
T PHA02597          1 MKPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT--DHILKMIQDERFRDPGE---LFGC--DQELAKKLIEKYNNSDF   69 (197)
T ss_pred             CCcEEEEecCCceEchh----hccHHHHHhcCCCH--HHHHHHHhHhhhcCHHH---Hhcc--cHHHHHHHhhhhhHHHH
Confidence            47899999999999953    34567777777543  34444434322222222   2221  222222223322222 2


Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc----ccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE----SFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~----~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .....++||+.++|+.|++. ++++++||.........+ ..+++..    +|+.+++++..   ||+|+.+..++++++
T Consensus        70 ~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~-~~~~l~~~f~~~f~~i~~~~~~---~~kp~~~~~a~~~~~  144 (197)
T PHA02597         70 IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLN-RQFNLNALFPGAFSEVLMCGHD---ESKEKLFIKAKEKYG  144 (197)
T ss_pred             HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHH-hhCCHHHhCCCcccEEEEeccC---cccHHHHHHHHHHhC
Confidence            24567999999999999987 578888887666554444 5566654    45667776653   567899999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHc--CCeEEEEcCCCCccccccccchhccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINSLLDLRP  216 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~--G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~  216 (260)
                        |++++||||+.+|+.+|+++  |+.+++++++..  .....+.+.+.++.|+..
T Consensus       145 --~~~~v~vgDs~~di~aA~~a~~Gi~~i~~~~~~~--~~~~~~~~~~~~~~~~~~  196 (197)
T PHA02597        145 --DRVVCFVDDLAHNLDAAHEALSQLPVIHMLRGER--DHIPKLAHRVKSWNDIEN  196 (197)
T ss_pred             --CCcEEEeCCCHHHHHHHHHHHcCCcEEEecchhh--ccccchhhhhccHHHHhc
Confidence              88999999999999999999  999999998643  333456699999988754

2 hypothetical protein; Provisional

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.92  E-value=1.9e-24  Score=164.95  Aligned_cols=170  Identities=22%  Similarity=0.252  Sum_probs=124.1

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHH-----HcCCCCChh-hhh----hccCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLV-----KYGKEWDGR-EKH----KIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV   79 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~-----~~~~~~~~~-~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (260)
                      ++|+||+||||+|+...+..++.+.+.     +++.+.... ...    ...|...    ..+.....  ...+.+.+.+
T Consensus         1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~~g~~~----~~~~~~~~--~~~~~~~~~~   74 (184)
T TIGR01993         1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYREYGTTL----AGLMILHE--IDADEYLRYV   74 (184)
T ss_pred             CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHchHH----HHHHHhhC--CCHHHHHHHH
Confidence            479999999999997777777766543     445432211 111    1122211    11222222  2222222222


Q ss_pred             HHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCC----CCCChHHHH
Q 024956           80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT----GKPSPDIFL  155 (260)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~----~kp~~~~~~  155 (260)
                      .+.  ......+++||+.++|++|+   ++++++||+....+...+ +.+|+..+|+.++++++.+.    .||+|+.|+
T Consensus        75 ~~~--~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~  148 (184)
T TIGR01993        75 HGR--LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRAL-NRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYE  148 (184)
T ss_pred             hcc--CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHH-HHcCcHhhhCeEEEeecccCccCCCCCCHHHHH
Confidence            211  11235678999999999998   579999999999999899 88999999999999988876    599999999


Q ss_pred             HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          156 EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       156 ~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      .+++++|++|++++||||++.|+.+|+++|+.++++
T Consensus       149 ~~~~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~v  184 (184)
T TIGR01993       149 KALREAGVDPERAIFFDDSARNIAAAKALGMKTVLV  184 (184)
T ss_pred             HHHHHhCCCccceEEEeCCHHHHHHHHHcCCEEeeC
Confidence            999999999999999999999999999999999864

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.91  E-value=5.6e-24  Score=166.91  Aligned_cols=194  Identities=20%  Similarity=0.238  Sum_probs=129.8

Q ss_pred             cccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhcc-C-CCHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 024956            4 PLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIV-G-KTPLEEAAIIVEDYGLPCAKHEFVNEVY   80 (260)
Q Consensus         4 ~~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (260)
                      ++++++|+++||+||||+++.     .+.++++.++........ .... | .......+.....+. ... .+      
T Consensus         9 ~~~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~-~~------   75 (219)
T TIGR00338         9 PLLRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEEVSEITERAMRGELDFKASLRERVALLK-GLP-VE------   75 (219)
T ss_pred             hhhccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhC-CCC-HH------
Confidence            356788999999999999974     344555666643222111 1111 1 112222222222221 101 11      


Q ss_pred             HHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-------cc---ccCCCCCC
Q 024956           81 SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-------SD---EVRTGKPS  150 (260)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-------~~---~~~~~kp~  150 (260)
                       .+.......+++||+.++|+.|+++|++++++|++....+...+ +.+++..+|+..+.       +.   .....+|+
T Consensus        76 -~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  153 (219)
T TIGR00338        76 -LLKEVRENLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVK-DKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK  153 (219)
T ss_pred             -HHHHHHhcCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence             12222345679999999999999999999999999999888888 88898887753221       11   12234678


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--ccccccc
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP  216 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~  216 (260)
                      +..++.+++++++++++++||||+.+|+.+|+.+|+..+ ++.   .......+++++.  ++.++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~-~~~---~~~~~~~a~~~i~~~~~~~~~~  217 (219)
T TIGR00338       154 GKTLLILLRKEGISPENTVAVGDGANDLSMIKAAGLGIA-FNA---KPKLQQKADICINKKDLTDILP  217 (219)
T ss_pred             HHHHHHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEE-eCC---CHHHHHhchhccCCCCHHHHHh
Confidence            999999999999999999999999999999999999754 433   3444567777766  4455443

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.91  E-value=3.4e-23  Score=153.53  Aligned_cols=154  Identities=25%  Similarity=0.417  Sum_probs=119.5

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV   90 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (260)
                      +|+||+||||+|+...+..++.+.+++++.  +.+.+....|...... ....             ..+.+.. ......
T Consensus         1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~-~~~~-------------~~~~~~~-~~~~~~   63 (154)
T TIGR01549         1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE--DFQALKALRGLAEELL-YRIA-------------TSFEELL-GYDAEE   63 (154)
T ss_pred             CeEecCCCcccccHHHHHHHHHHHHHHhcc--cHHHHHHHHccChHHH-HHHH-------------HHHHHHh-Ccchhh
Confidence            489999999999988889999999998874  3333333333322111 1111             1111111 112245


Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ..+||+.++|+.|+++|++++++||+....+...+ +.+ +..+|+.++++++.+ .||+|+.+..+++++++++ +++|
T Consensus        64 ~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~-l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~~~~~-~~l~  139 (154)
T TIGR01549        64 AYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLL-RKH-LGDYFDLILGSDEFG-AKPEPEIFLAALESLGLPP-EVLH  139 (154)
T ss_pred             eeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHH-HHH-HHhcCcEEEecCCCC-CCcCHHHHHHHHHHcCCCC-CEEE
Confidence            56799999999999999999999999999988888 665 778899999988888 9999999999999999999 9999


Q ss_pred             EecCHhhHHHHHHcC
Q 024956          171 IEDSVIGVVAGKAAG  185 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G  185 (260)
                      |||+..|+.+|+++|
T Consensus       140 iGDs~~Di~aa~~aG  154 (154)
T TIGR01549       140 VGDNLNDIEGARNAG  154 (154)
T ss_pred             EeCCHHHHHHHHHcc
Confidence            999999999999987

HAD subfamilies caused by an overly broad single model.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.90  E-value=1.4e-23  Score=159.01  Aligned_cols=161  Identities=17%  Similarity=0.293  Sum_probs=122.6

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCC---CCh-----hhhhhccCC--CHH----HHHHHHHHHhCCCCCHHHHH
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE---WDG-----REKHKIVGK--TPL----EEAAIIVEDYGLPCAKHEFV   76 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~g~--~~~----~~~~~~~~~~~~~~~~~~~~   76 (260)
                      +|+||+||||+|+...+..++..++...+..   +..     .......+.  ...    ..++.+.+.++++...+ . 
T Consensus         1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~-   78 (175)
T TIGR01493         1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRAKQQEYSWRRSLMGDRRAFPEDTVRALRYIADRLGLDAEPK-Y-   78 (175)
T ss_pred             CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHcCCCCCHH-H-
Confidence            5899999999999988888887776653321   111     111122221  111    25667777777764432 1 


Q ss_pred             HHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956           77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                         .+.+...+....++||+.++|+       +++|+||++...+...+ +++++..+|+.+++++.++..||+|+.|..
T Consensus        79 ---~~~~~~~~~~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l-~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~  147 (175)
T TIGR01493        79 ---GERLRDAYKNLPPWPDSAAALA-------RVAILSNASHWAFDQFA-QQAGLPWYFDRAFSVDTVRAYKPDPVVYEL  147 (175)
T ss_pred             ---HHHHHHHHhcCCCCCchHHHHH-------HHhhhhCCCHHHHHHHH-HHCCCHHHHhhhccHhhcCCCCCCHHHHHH
Confidence               2233333446789999999998       37899999999999888 889999999999999998999999999999


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      +++++|++|++|+||||+..|+.+|+++
T Consensus       148 ~~~~~~~~p~~~l~vgD~~~Di~~A~~~  175 (175)
T TIGR01493       148 VFDTVGLPPDRVLMVAAHQWDLIGARKF  175 (175)
T ss_pred             HHHHHCCCHHHeEeEecChhhHHHHhcC
Confidence            9999999999999999999999999863

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PLN02954 phosphoserine phosphatase

Probab=99.89  E-value=8.7e-22  Score=154.99  Aligned_cols=196  Identities=16%  Similarity=0.140  Sum_probs=130.8

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh-hhhhccC--CCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR-EKHKIVG--KTPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      .+++|+|+|||||||+++.     .+..+++.+|...... ....+.+  ....+.+...+.....  ..    +.+...
T Consensus         9 ~~~~k~viFDfDGTL~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~----~~~~~~   77 (224)
T PLN02954          9 WRSADAVCFDVDSTVCVDE-----GIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKP--SL----SQVEEF   77 (224)
T ss_pred             HccCCEEEEeCCCcccchH-----HHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCC--CH----HHHHHH
Confidence            4578999999999999974     3456667777542222 2223333  2233333333333221  11    222222


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc--cccceEE--------eccc----cCCCC
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSVIV--------GSDE----VRTGK  148 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~--~~f~~i~--------~~~~----~~~~k  148 (260)
                      +..  ....++||+.++|+.|+++|++++|+|++....++..+ +.+|+.  .+|+..+        .+..    ....+
T Consensus        78 ~~~--~~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l-~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  154 (224)
T PLN02954         78 LEK--RPPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVA-AILGIPPENIFANQILFGDSGEYAGFDENEPTSRSG  154 (224)
T ss_pred             HHH--ccCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCc
Confidence            222  13568999999999999999999999999999999888 888886  3554211        1111    12356


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhcccccccccc
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~  217 (260)
                      ++++.++.++++++.  ++++||||+.+|+.+++.+|+.++....+... ......++++++++.++.+.
T Consensus       155 ~K~~~i~~~~~~~~~--~~~i~iGDs~~Di~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~  222 (224)
T PLN02954        155 GKAEAVQHIKKKHGY--KTMVMIGDGATDLEARKPGGADLFIGYGGVQVREAVAAKADWFVTDFQDLIEV  222 (224)
T ss_pred             cHHHHHHHHHHHcCC--CceEEEeCCHHHHHhhhcCCCCEEEecCCCccCHHHHhcCCEEECCHHHHHHh
Confidence            788999999998875  68999999999999999988876654332222 22345688999999888654

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.89  E-value=3.5e-22  Score=153.56  Aligned_cols=186  Identities=25%  Similarity=0.285  Sum_probs=138.2

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh------------------hccC-CCHHHHHHHHHHHh
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH------------------KIVG-KTPLEEAAIIVEDY   66 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~g-~~~~~~~~~~~~~~   66 (260)
                      .+++|+|+||++|||+.........+.++.+.+|.+.+.....                  ...| ....++...+....
T Consensus         4 ~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~lv~~~   83 (237)
T KOG3085|consen    4 LMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDDSLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKLVEST   83 (237)
T ss_pred             ccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCHHHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHHHHHH
Confidence            4578999999999999876666677788888888774443221                  1122 24455555444433


Q ss_pred             CCCCCH---HHHHHHH-HHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec
Q 024956           67 GLPCAK---HEFVNEV-YSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        67 ~~~~~~---~~~~~~~-~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      ......   ++..+.+ ...+.... ......+++.++++.|+++|..+.++||.+...- ..+ ..+++..+||.++.|
T Consensus        84 f~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l-~~~~l~~~fD~vv~S  161 (237)
T KOG3085|consen   84 FGKAGIDYEEELLENFSFRLFSTFAPSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLL-LPLGLSAYFDFVVES  161 (237)
T ss_pred             hccccchhHHHHHhhhhhheeccccccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHh-hccCHHHhhhhhhhh
Confidence            222111   1111111 11222211 2355667888999999999999999999888865 455 788999999999999


Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~  193 (260)
                      ...+..||+|.+|+.+++++++.|++|++|||+. ||+++|+++|+.++++..
T Consensus       162 ~e~g~~KPDp~If~~al~~l~v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~  214 (237)
T KOG3085|consen  162 CEVGLEKPDPRIFQLALERLGVKPEECVHIGDLLENDYEGARNLGWHAILVDN  214 (237)
T ss_pred             hhhccCCCChHHHHHHHHHhCCChHHeEEecCccccccHhHHHcCCEEEEEcc
Confidence            9999999999999999999999999999999999 899999999999999976

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.89  E-value=5.6e-21  Score=148.08  Aligned_cols=185  Identities=13%  Similarity=0.094  Sum_probs=124.1

Q ss_pred             ccEEEEecCCccccCHHH-------HHHHHHHHHHHcCCCCChhhhhhccCCC-HHHHHHHHHHHhCCC---CCHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGM-------FSEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAIIVEDYGLP---CAKHEFVN   77 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~---~~~~~~~~   77 (260)
                      +++|++|+.||+.+-...       ....+..+++...........+...+.. .......+......+   ...+.+..
T Consensus         1 ~~~~l~diegt~~~isfv~~~lfpy~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~k~~~lk~lqg   80 (220)
T TIGR01691         1 IKNVLLDIEGTTGSISFVHDVLFPYAASRLESFVNDNYESTIVENLRELGKTPEELILLRKLHAEMDKDRKATPLKTLQG   80 (220)
T ss_pred             CCEEEEecCCCcccHHHHHhhhhHHHHHHHHHHHHHhCCCHHHHHHHHhccCCcHHHHHHHHHHHHHcCCCcchHHHHHH
Confidence            478999999999975322       1222223332221111111222222221 122233333332222   22333333


Q ss_pred             H-HHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc---CCccccceEEeccccCCCCCChHH
Q 024956           78 E-VYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH---GWNESFSVIVGSDEVRTGKPSPDI  153 (260)
Q Consensus        78 ~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~---gl~~~f~~i~~~~~~~~~kp~~~~  153 (260)
                      . +.+.+........++|++.++|++|+++|++++|+||++...++..+ +..   ++..+|+.++... . ..||+|+.
T Consensus        81 ~iw~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~-~~~~~~~L~~~f~~~fd~~-~-g~KP~p~~  157 (220)
T TIGR01691        81 LIWRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLF-GHSDAGNLTPYFSGYFDTT-V-GLKTEAQS  157 (220)
T ss_pred             HHHHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-hhccccchhhhcceEEEeC-c-ccCCCHHH
Confidence            3 44444443445779999999999999999999999999998877776 543   5777788776532 3 37999999


Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                      |..+++++|++|++++||||+..|+.+|+++|+.++++.++.+
T Consensus       158 y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~r~g~  200 (220)
T TIGR01691       158 YVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLVRPGN  200 (220)
T ss_pred             HHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEECCCC
Confidence            9999999999999999999999999999999999999988543

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.88  E-value=9e-22  Score=152.35  Aligned_cols=106  Identities=13%  Similarity=0.058  Sum_probs=88.7

Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCC----------CChHHHHH
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK----------PSPDIFLE  156 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~k----------p~~~~~~~  156 (260)
                      +....++||+.++|+.|+++|++++|+|++....++..+ +.+|+..+|+..+..+..+..+          ++++.++.
T Consensus        76 ~~~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~  154 (201)
T TIGR01491        76 FKEISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVA-EKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVER  154 (201)
T ss_pred             HHhCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHHH
Confidence            345689999999999999999999999999999999888 8889888776665544333333          33468899


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +++++++++++++||||+.+|+.+|+.+|+.++....
T Consensus       155 ~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~  191 (201)
T TIGR01491       155 LKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDE  191 (201)
T ss_pred             HHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCC
Confidence            9999999999999999999999999999998776554

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.88  E-value=1.1e-21  Score=160.39  Aligned_cols=184  Identities=15%  Similarity=0.164  Sum_probs=125.6

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh--hccCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH--KIVGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSMF   83 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (260)
                      .++++|+|||||||+..     +++.++.+..|.........  ...|. ...+.+..-...+.  ...++.       +
T Consensus       108 ~~~~LvvfDmDGTLI~~-----e~i~eia~~~g~~~~v~~it~~~m~Geldf~esl~~rv~~l~--g~~~~i-------l  173 (322)
T PRK11133        108 RTPGLLVMDMDSTAIQI-----ECIDEIAKLAGTGEEVAEVTERAMRGELDFEASLRQRVATLK--GADANI-------L  173 (322)
T ss_pred             cCCCEEEEECCCCCcch-----HHHHHHHHHhCCchHHHHHHHHHHcCCcCHHHHHHHHHHHhC--CCCHHH-------H
Confidence            46899999999999943     45566666666543322221  11111 11222221111111  011111       1


Q ss_pred             HhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc-------eEEecc---ccCCCCCChHH
Q 024956           84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-------VIVGSD---EVRTGKPSPDI  153 (260)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~-------~i~~~~---~~~~~kp~~~~  153 (260)
                      ......++++||+.++++.|++.|++++|+|++.....+..+ +.+++...+.       ..+.+.   .....++|++.
T Consensus       174 ~~v~~~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~-~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~  252 (322)
T PRK11133        174 QQVRENLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR-DKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADT  252 (322)
T ss_pred             HHHHHhCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH-HHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHH
Confidence            222235789999999999999999999999999988877666 7788765443       122221   23356899999


Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN  209 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~  209 (260)
                      ++.+++++|++++++++|||+.||+.|++.+|+.+++ +.   .+..+..+++.++
T Consensus       253 L~~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA---kp~Vk~~Ad~~i~  304 (322)
T PRK11133        253 LTRLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA---KPKVNEQAQVTIR  304 (322)
T ss_pred             HHHHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC---CHHHHhhCCEEec
Confidence            9999999999999999999999999999999998776 54   5777788888886

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.87  E-value=2e-21  Score=146.99  Aligned_cols=123  Identities=24%  Similarity=0.309  Sum_probs=99.1

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEec-----------cc
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----------DE  143 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-----------~~  143 (260)
                      .+++||+.++|++|+++|++++++||.+.               ..+...+ ...++.  |+.++.+           +.
T Consensus        25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~--~~~i~~~~~~~~~~~~~~~~  101 (176)
T TIGR00213        25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSL-AERDVD--LDGIYYCPHHPEGVEEFRQV  101 (176)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCCC--ccEEEECCCCCcccccccCC
Confidence            46889999999999999999999999985               2233344 444554  6666543           24


Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc-ccccchhcccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLR  215 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~-~~~~~~~v~~~~~l~  215 (260)
                      ....||+|+.|..+++++++++++++||||+..|+++|+++|+.+ +++.++...... ...++++++++.+|.
T Consensus       102 ~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~~~~i~v~~g~~~~~~~~~~ad~~i~~~~el~  175 (176)
T TIGR00213       102 CDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKVKTNVLVRTGKPITPEAENIADWVLNSLADLP  175 (176)
T ss_pred             CCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCCcEEEEEecCCcccccccccCCEEeccHHHhh
Confidence            557899999999999999999999999999999999999999998 788886543332 345899999998875

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PRK06769 hypothetical protein; Validated

Probab=99.87  E-value=7.9e-22  Score=148.35  Aligned_cols=128  Identities=14%  Similarity=0.182  Sum_probs=101.3

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChH--------hHHHHHHhhcCCccccceEE-eccccCCCCCChHHHHHHHHH
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRA--------TIESKISYQHGWNESFSVIV-GSDEVRTGKPSPDIFLEAAKR  160 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~--------~~~~~l~~~~gl~~~f~~i~-~~~~~~~~kp~~~~~~~~l~~  160 (260)
                      ..++||+.++|++|+++|++++++||....        .....+ +.+|+..+|.... .++..+..||+|+.+..++++
T Consensus        27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~  105 (173)
T PRK06769         27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQEL-KGFGFDDIYLCPHKHGDGCECRKPSTGMLLQAAEK  105 (173)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHH-HhCCcCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence            457899999999999999999999998642        122334 5566654433222 345567899999999999999


Q ss_pred             cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-------cc-ccccchhccccccccccc
Q 024956          161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-------HR-YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       161 l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-------~~-~~~~~~~v~~~~~l~~~~  218 (260)
                      ++++|++++||||+.+|+.+|+++|+.+|++.++....       .. ...++++++++.|+...+
T Consensus       106 l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l  171 (173)
T PRK06769        106 HGLDLTQCAVIGDRWTDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWI  171 (173)
T ss_pred             cCCCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHH
Confidence            99999999999999999999999999999999864332       11 345889999999987654

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.87  E-value=1.8e-21  Score=147.93  Aligned_cols=126  Identities=28%  Similarity=0.325  Sum_probs=100.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEec-----cccCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS-----DEVRTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~-----~~~~~~kp  149 (260)
                      ..++||+.++|++|++.|++++++||...               ..+...+ +.+++  .|+.++.+     +..+..||
T Consensus        28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~--~f~~i~~~~~~~~~~~~~~KP  104 (181)
T PRK08942         28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL-ADRGG--RLDGIYYCPHHPEDGCDCRKP  104 (181)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcCCCC
Confidence            46889999999999999999999999863               2233344 45565  37776653     34577999


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-cccc--chhccccccccccc
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA--DEVINSLLDLRPEK  218 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~--~~~v~~~~~l~~~~  218 (260)
                      +|+.+..++++++++|++++||||+.+|+.+|+++|+.++++.++...... ...+  +++++++.++.+.+
T Consensus       105 ~p~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~~~ii~~l~el~~~l  176 (181)
T PRK08942        105 KPGMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAGVTPVLVRTGKGVTTLAEGAAPGTWVLDSLADLPQAL  176 (181)
T ss_pred             CHHHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEEEcCCCCchhhhcccCCCceeecCHHHHHHHH
Confidence            999999999999999999999999999999999999999999875433222 3345  78888888877654

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.85  E-value=8.8e-21  Score=139.13  Aligned_cols=101  Identities=28%  Similarity=0.420  Sum_probs=84.1

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEE----eccccCCCCCCh
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIV----GSDEVRTGKPSP  151 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~----~~~~~~~~kp~~  151 (260)
                      +++||+.++|+.|+++|++++++||...               ..+...+ +.+++... ..++    .++..+..||++
T Consensus        27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~l~~~-~~~~~~~~~~~~~~~~KP~~  104 (147)
T TIGR01656        27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELL-RQLGVAVD-GVLFCPHHPADNCSCRKPKP  104 (147)
T ss_pred             EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHH-HhCCCcee-EEEECCCCCCCCCCCCCCCH
Confidence            5789999999999999999999999873               3445556 67777521 1222    134556689999


Q ss_pred             HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.++.+++++++++++++||||+..|+++|+++|+.+++++.
T Consensus       105 ~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi~~v~i~~  146 (147)
T TIGR01656       105 GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGLAAVLLVD  146 (147)
T ss_pred             HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCCCEEEecC
Confidence            999999999999999999999999999999999999999875

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.84  E-value=1.4e-19  Score=141.35  Aligned_cols=147  Identities=16%  Similarity=0.130  Sum_probs=107.4

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK   89 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (260)
                      +|+||+||||+|+...+         .+|.. .+...+..+.+.                    .+.+.+.+..   -..
T Consensus        65 aViFDlDgTLlDSs~~~---------~~G~~~~s~~~~~~l~g~--------------------~~w~~~~~~~---~~~  112 (237)
T TIGR01672        65 AVSFDIDDTVLFSSPGF---------WRGKKTFSPGSEDYLKNQ--------------------VFWEKVNNGW---DEF  112 (237)
T ss_pred             EEEEeCCCccccCcHHH---------hCCcccCCHHHhhhhcCh--------------------HHHHHHHHhc---ccC
Confidence            89999999999997766         14443 233333222222                    1112222111   123


Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCC----ChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNS----HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~----~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      ..+.+++.++|++++++|++++++||.    ....++..+ +.+|+..+|+.+++++.....||++.   ..++++++  
T Consensus       113 s~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll-~~lGi~~~f~~i~~~d~~~~~Kp~~~---~~l~~~~i--  186 (237)
T TIGR01672       113 SIPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLA-KNFHIPAMNPVIFAGDKPGQYQYTKT---QWIQDKNI--  186 (237)
T ss_pred             CcchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHH-HHhCCchheeEEECCCCCCCCCCCHH---HHHHhCCC--
Confidence            456777999999999999999999998    445566666 88999999999999888777777764   35666665  


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ  197 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~  197 (260)
                        ++||||+.+|+.+|+++|+.++.+.++...
T Consensus       187 --~i~vGDs~~DI~aAk~AGi~~I~V~~g~~s  216 (237)
T TIGR01672       187 --RIHYGDSDNDITAAKEAGARGIRILRASNS  216 (237)
T ss_pred             --eEEEeCCHHHHHHHHHCCCCEEEEEecCCC
Confidence              799999999999999999999999885443

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.83  E-value=1.7e-20  Score=146.95  Aligned_cols=192  Identities=14%  Similarity=0.145  Sum_probs=124.8

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh-hc--cCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KI--VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+||+||||++.+..+ .    +++.++. ...+... .+  -.....+.++..++.+....     .+.+.+.+.  
T Consensus         4 ~~vifDfDgTi~~~d~~~-~----~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~--   70 (219)
T PRK09552          4 IQIFCDFDGTITNNDNII-A----IMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLPSNL-----KEEIIQFLL--   70 (219)
T ss_pred             cEEEEcCCCCCCcchhhH-H----HHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCc-----hHHHHHHHH--
Confidence            489999999999987654 2    2233332 1111111 11  11134455566666543220     122222222  


Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--cc--ceEEeccccCCCCCChHH---------
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SF--SVIVGSDEVRTGKPSPDI---------  153 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f--~~i~~~~~~~~~kp~~~~---------  153 (260)
                       ...+++||+.++|+.|+++|++++|+|++....++..+ +.+ +..  ++  +..+.++.....||.|..         
T Consensus        71 -~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~  147 (219)
T PRK09552         71 -ETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLL-QGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGC  147 (219)
T ss_pred             -hCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHH-HHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCC
Confidence             35789999999999999999999999999999999888 655 432  22  333445555556666543         


Q ss_pred             -HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhcccccccccccc
Q 024956          154 -FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       154 -~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                       ...++++++.++++++||||+.+|+.+|+.+|+.++  ... .........+...++++.|+...+.
T Consensus       148 ~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~~~a--~~~l~~~~~~~~~~~~~~~~f~ei~~~l~  213 (219)
T PRK09552        148 CKPSLIRKLSDTNDFHIVIGDSITDLEAAKQADKVFA--RDFLITKCEELGIPYTPFETFHDVQTELK  213 (219)
T ss_pred             chHHHHHHhccCCCCEEEEeCCHHHHHHHHHCCccee--HHHHHHHHHHcCCCccccCCHHHHHHHHH
Confidence             457889999999999999999999999999999433  221 1111224457777888888766653

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=134.43  Aligned_cols=193  Identities=20%  Similarity=0.259  Sum_probs=135.5

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHH----HHH-HHcCCCCChhhh-----hhccCCCHHHHHHHHHHHhCCCCCHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLK----TFL-VKYGKEWDGREK-----HKIVGKTPLEEAAIIVEDYGLPCAKHEF   75 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~----~~~-~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~   75 (260)
                      -.++++++||+|+||+..+..+....+    +++ +++|..-+....     ....|.    .+..+ ...+...+..  
T Consensus        12 ~~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~----t~aGL-~~~~~~~d~d--   84 (244)
T KOG3109|consen   12 GPNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGL----TMAGL-KAVGYIFDAD--   84 (244)
T ss_pred             CccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhH----HHHHH-HHhcccCCHH--
Confidence            347899999999999998766655544    333 355644322211     111111    11111 1122222222  


Q ss_pred             HHHHHHHHHhh--hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC------CC
Q 024956           76 VNEVYSMFSDH--LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR------TG  147 (260)
Q Consensus        76 ~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~------~~  147 (260)
                        .+.++....  ++.+++.+-.+.+|-.|+.++  .+++||+...++.+.+ +++|+.++|+.+++.+...      .-
T Consensus        85 --eY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~L-k~LGieDcFegii~~e~~np~~~~~vc  159 (244)
T KOG3109|consen   85 --EYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRIL-KKLGIEDCFEGIICFETLNPIEKTVVC  159 (244)
T ss_pred             --HHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHH-HHhChHHhccceeEeeccCCCCCceee
Confidence              333334333  245889999999999999764  9999999999999999 9999999999998876443      57


Q ss_pred             CCChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccc
Q 024956          148 KPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL  214 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l  214 (260)
                      ||.+++|+.+.+..|+. |.+++||+||.++|..|+..|+.++++.....    ...+++++.+..+.
T Consensus       160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv~~~~~----~~~~d~~l~~ih~~  223 (244)
T KOG3109|consen  160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLVGREHK----IKGVDYALEQIHNN  223 (244)
T ss_pred             cCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEEEeeec----ccchHHHHHHhhch
Confidence            99999999999999998 99999999999999999999999999977222    23445555544443

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.83  E-value=3.5e-20  Score=137.93  Aligned_cols=107  Identities=16%  Similarity=0.069  Sum_probs=95.0

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcCCc---------cccceEEeccccCCCCCChHHHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN---------ESFSVIVGSDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~gl~---------~~f~~i~~~~~~~~~kp~~~~~~~~  157 (260)
                      ....++||+.++|+.|+++|++++++||+ ....++..+ +.+++.         .+|+.+++++.....||.+.+++.+
T Consensus        42 ~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L-~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~  120 (174)
T TIGR01685        42 TEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEIL-GTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKV  120 (174)
T ss_pred             CEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHH-HhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHh
Confidence            35788999999999999999999999998 778788888 888988         9999999988776677777777777


Q ss_pred             HHHc--CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 024956          158 AKRL--NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP  195 (260)
Q Consensus       158 l~~l--~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~  195 (260)
                      .+.+  +++|++++||||++.|+.+|+++|+.++++.++.
T Consensus       121 ~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i~v~~g~  160 (174)
T TIGR01685       121 NKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSCYCPSGM  160 (174)
T ss_pred             hhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEEEcCCCc
Confidence            7777  8999999999999999999999999999998854

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.83  E-value=1.4e-19  Score=130.58  Aligned_cols=98  Identities=23%  Similarity=0.434  Sum_probs=84.9

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCC--------hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSH--------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~--------~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      ..++|++.++|++|++.|++++++||+.        ...+...+ +.+++.  ++.++.+.  ...||+++.++.+++++
T Consensus        24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l-~~~~l~--~~~~~~~~--~~~KP~~~~~~~~~~~~   98 (132)
T TIGR01662        24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRL-EELGVP--IDVLYACP--HCRKPKPGMFLEALKRF   98 (132)
T ss_pred             heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHH-HHCCCC--EEEEEECC--CCCCCChHHHHHHHHHc
Confidence            3578999999999999999999999998        77777777 778875  34444443  56799999999999999


Q ss_pred             -CCCCCcEEEEec-CHhhHHHHHHcCCeEEEEc
Q 024956          162 -NMEPSSSLVIED-SVIGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       162 -~~~~~~~~~vGD-~~~Dv~~a~~~G~~~i~~~  192 (260)
                       +++|++++|||| +.+|+.+|+.+|+.+|+++
T Consensus        99 ~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~~  131 (132)
T TIGR01662        99 NEIDPEESVYVGDQDLTDLQAAKRAGLAFILVA  131 (132)
T ss_pred             CCCChhheEEEcCCCcccHHHHHHCCCeEEEee
Confidence             599999999999 6899999999999999985

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.82  E-value=3e-19  Score=138.67  Aligned_cols=189  Identities=17%  Similarity=0.123  Sum_probs=118.7

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-CCHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYG-LPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   86 (260)
                      +++|+||+||||++      +.|..+.+++|.+... .+  ..+ ......+..-.+... ...+.+++        ...
T Consensus         1 ~~~v~FD~DGTL~~------~~~~~~~~~~g~~~~~-~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~i--------~~~   63 (205)
T PRK13582          1 MEIVCLDLEGVLVP------EIWIAFAEKTGIPELR-AT--TRDIPDYDVLMKQRLDILDEHGLGLADI--------QEV   63 (205)
T ss_pred             CeEEEEeCCCCChh------hHHHHHHHHcCChHHH-HH--hcCCCCHHHHHHHHHHHHHHcCCCHHHH--------HHH
Confidence            47899999999993      2445556676643211 00  000 111122211111111 01111111        222


Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----cCCCCCChHHHHHHHHHcC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----VRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~~~~kp~~~~~~~~l~~l~  162 (260)
                      ....+++||+.++|+.|+++ ++++++|++....++..+ +.+|+..+|+..+..+.    .+..++.|.....+++.++
T Consensus        64 ~~~~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~  141 (205)
T PRK13582         64 IATLDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLM-RQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK  141 (205)
T ss_pred             HHhCCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHH-HHcCCchhhcceEEECCCCeEECccccccchHHHHHHHHH
Confidence            34578899999999999999 999999999999999888 88899887765433211    1222334455566667777


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch-hcccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE-VINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~-~v~~~~~l~~~~~  219 (260)
                      ..+++++||||+.+|+.+++.+|+... ++.  ........+++ +++++.++...+.
T Consensus       142 ~~~~~~v~iGDs~~D~~~~~aa~~~v~-~~~--~~~~~~~~~~~~~~~~~~el~~~l~  196 (205)
T PRK13582        142 SLGYRVIAAGDSYNDTTMLGEADAGIL-FRP--PANVIAEFPQFPAVHTYDELLAAID  196 (205)
T ss_pred             HhCCeEEEEeCCHHHHHHHHhCCCCEE-ECC--CHHHHHhCCcccccCCHHHHHHHHH
Confidence            778899999999999999999998553 333  11112234444 8999998876654

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.81  E-value=1.7e-19  Score=133.54  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=89.3

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCC---------------hHhHHHHHHhhcCCccccceEE-e----ccccCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~gl~~~f~~i~-~----~~~~~~~kp  149 (260)
                      .+++||+.++|++|+++|++++++||..               ...+...+ +.+|+.  |+.++ +    ++.....||
T Consensus        28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~ii~~~~~~~~~~~~~KP  104 (161)
T TIGR01261        28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIF-RSQGII--FDDVLICPHFPDDNCDCRKP  104 (161)
T ss_pred             eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHH-HHCCCc--eeEEEECCCCCCCCCCCCCC
Confidence            5789999999999999999999999973               34556666 778886  77554 4    477888999


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +++.+..+++++++++++++||||+.+|+.+|+.+|+.++++.+
T Consensus       105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~~~  148 (161)
T TIGR01261       105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQYDE  148 (161)
T ss_pred             CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEECh
Confidence            99999999999999999999999999999999999999999987

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.79  E-value=1.1e-18  Score=126.49  Aligned_cols=104  Identities=31%  Similarity=0.471  Sum_probs=93.4

Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC----------------CCC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG----------------KPS  150 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~----------------kp~  150 (260)
                      .....+++++.++|++|+++|++++++|++....++..+ +..++...++.+++.+.....                ||+
T Consensus        20 ~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (139)
T cd01427          20 IEELELYPGVKEALKELKEKGIKLALATNKSRREVLELL-EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPN   98 (139)
T ss_pred             cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHH-HHcCCchhhhheeccchhhhhcccccccccccccccCCCC
Confidence            356789999999999999999999999999999999888 888888888888877655544                999


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      +..+..+++.++..++++++|||+.+|+.+++.+|+.++++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~~i~v  139 (139)
T cd01427          99 PDKLLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGLGVAV  139 (139)
T ss_pred             HHHHHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCceeeC
Confidence            99999999999999999999999999999999999988764

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.78  E-value=3.9e-18  Score=130.55  Aligned_cols=95  Identities=17%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc--------------------cCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE--------------------VRTGK  148 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~--------------------~~~~k  148 (260)
                      ..+++|++.++|+.|+++|++++++|++....++..+ +.+++..+|+.+++.+.                    ...+.
T Consensus        70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~  148 (188)
T TIGR01489        70 SAPIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVL-EGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC  148 (188)
T ss_pred             hCCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence            4689999999999999999999999999999998888 88899999999886532                    12334


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      +|++.++++++..   +++++||||+.+|+.+|+.+++-
T Consensus       149 ~K~~~~~~~~~~~---~~~~i~iGD~~~D~~aa~~~d~~  184 (188)
T TIGR01489       149 CKGKVIHKLSEPK---YQHIIYIGDGVTDVCPAKLSDVV  184 (188)
T ss_pred             CHHHHHHHHHhhc---CceEEEECCCcchhchHhcCCcc
Confidence            4667787777664   78999999999999999998753

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.77  E-value=7.3e-18  Score=130.20  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=85.8

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----------cCCCCCChHHHHHHHH
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------VRTGKPSPDIFLEAAK  159 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------~~~~kp~~~~~~~~l~  159 (260)
                      .++.|++.++++.+++.|++++++|++....++... +.+|++..+...+..++          ....+-|...++++++
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia-~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~  154 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIA-ERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAA  154 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHH-HHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHH
Confidence            789999999999999999999999999999998888 99999887765544432          1123446688899999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      .+|+++++++++|||.||+.|.+.+|.+.+.-
T Consensus       155 ~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n  186 (212)
T COG0560         155 ELGIPLEETVAYGDSANDLPMLEAAGLPIAVN  186 (212)
T ss_pred             HcCCCHHHeEEEcCchhhHHHHHhCCCCeEeC
Confidence            99999999999999999999999999875543

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.77  E-value=2.1e-18  Score=128.48  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=82.3

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChH------------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRA------------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~------------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ++||+.++|++|+++|++++|+||+...            .+...+ +.+|+..  +.+++++.....||+++.+..+++
T Consensus        43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l-~~~gl~~--~~ii~~~~~~~~KP~p~~~~~~~~  119 (166)
T TIGR01664        43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFL-EKLKVPI--QVLAATHAGLYRKPMTGMWEYLQS  119 (166)
T ss_pred             ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHH-HHcCCCE--EEEEecCCCCCCCCccHHHHHHHH
Confidence            6899999999999999999999998763            355666 7788853  566666666678999999999999


Q ss_pred             HcC--CCCCcEEEEecCH--------hhHHHHHHcCCeEEE
Q 024956          160 RLN--MEPSSSLVIEDSV--------IGVVAGKAAGMEVVA  190 (260)
Q Consensus       160 ~l~--~~~~~~~~vGD~~--------~Dv~~a~~~G~~~i~  190 (260)
                      +++  +++++++||||+.        +|+++|+++|+.+++
T Consensus       120 ~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~  160 (166)
T TIGR01664       120 QYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKY  160 (166)
T ss_pred             HcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCC
Confidence            999  9999999999996        699999999998754

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.76  E-value=4.5e-17  Score=125.26  Aligned_cols=181  Identities=17%  Similarity=0.145  Sum_probs=112.9

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCC-HHHHHHH---HHHHhCCCCCHHHHHHHHHHHHHh
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKT-PLEEAAI---IVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      .+++||+||||++.      .|.++..+.|..  ...... .+.. ..+..+.   +++..+++  .+.+        .+
T Consensus         2 ~la~FDlD~TLi~~------~w~~~~~~~g~~--~~~~~~-~~~~~~~~~~~~r~~ll~~~g~~--~~~i--------~~   62 (203)
T TIGR02137         2 EIACLDLEGVLVPE------IWIAFAEKTGID--ALKATT-RDIPDYDVLMKQRLRILDEHGLK--LGDI--------QE   62 (203)
T ss_pred             eEEEEeCCcccHHH------HHHHHHHHcCCc--HHHHHh-cCCcCHHHHHHHHHHHHHHCCCC--HHHH--------HH
Confidence            46899999999964      466666777732  211111 1111 1111111   11111332  2222        22


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce--------EEeccccCCCCCChHHHHHH
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--------IVGSDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~--------i~~~~~~~~~kp~~~~~~~~  157 (260)
                      ....++++||+.++++.+++. .+++|+|++....+...+ +.+|+..+|..        .+++... ..++.+......
T Consensus        63 ~~~~i~l~pga~ell~~lk~~-~~~~IVS~~~~~~~~~il-~~lgi~~~~an~l~~~~~g~~tG~~~-~~~~~K~~~l~~  139 (203)
T TIGR02137        63 VIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQL-RQKDPKRQSVIA  139 (203)
T ss_pred             HHHhCCCCccHHHHHHHHHhC-CeEEEEeCChHHHHHHHH-HHcCCchhhceeeEEecCCeeECeee-cCcchHHHHHHH
Confidence            334568999999999999997 499999999999999888 88999887762        2222111 234444444444


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-cccc-chhcccccccccccc
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAA-DEVINSLLDLRPEKW  219 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~-~~~v~~~~~l~~~~~  219 (260)
                      +++.+.   ++++|||+.||+.|++.+|...++...    +.. ...+ ..++.+++||+..+.
T Consensus       140 l~~~~~---~~v~vGDs~nDl~ml~~Ag~~ia~~ak----~~~~~~~~~~~~~~~~~~~~~~~~  196 (203)
T TIGR02137       140 FKSLYY---RVIAAGDSYNDTTMLSEAHAGILFHAP----ENVIREFPQFPAVHTYEDLKREFL  196 (203)
T ss_pred             HHhhCC---CEEEEeCCHHHHHHHHhCCCCEEecCC----HHHHHhCCCCCcccCHHHHHHHHH
Confidence            455553   799999999999999999998776544    222 2222 345667777766653

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.75  E-value=1.5e-18  Score=138.66  Aligned_cols=125  Identities=19%  Similarity=0.163  Sum_probs=100.2

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc---CCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~---~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      ++++.+.++.|++.++++++.||.+........ ...+...+|+.+..+...   ..+||+|..++.++++++++|++++
T Consensus       122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~~~~~~~~  200 (257)
T TIGR01458       122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDG-LALDVGPFVTALEYATDTKATVVGKPSKTFFLEALRATGCEPEEAV  200 (257)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCC-CCCCchHHHHHHHHHhCCCceeecCCCHHHHHHHHHHhCCChhhEE
Confidence            567888899999888999999998877665555 556777777766544332   2479999999999999999999999


Q ss_pred             EEecCH-hhHHHHHHcCCeEEEEcCCCC-cc---ccccccchhccccccccccc
Q 024956          170 VIEDSV-IGVVAGKAAGMEVVAVPSLPK-QT---HRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       170 ~vGD~~-~Dv~~a~~~G~~~i~~~~~~~-~~---~~~~~~~~~v~~~~~l~~~~  218 (260)
                      ||||+. +|+.+|+.+|+.++++.++.. ..   .....|+++++++.++.+.+
T Consensus       201 ~vGD~~~~Di~~a~~~G~~~i~v~~G~~~~~~~~~~~~~pd~~~~sl~el~~~l  254 (257)
T TIGR01458       201 MIGDDCRDDVGGAQDCGMRGIQVRTGKYRPSDEEKINVPPDLTCDSLPHAVDLI  254 (257)
T ss_pred             EECCCcHHHHHHHHHcCCeEEEECCCCCChHHhcccCCCCCEEECCHHHHHHHH
Confidence            999997 899999999999999988642 21   12456889999999987654

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.75  E-value=1e-16  Score=124.20  Aligned_cols=178  Identities=16%  Similarity=0.124  Sum_probs=114.9

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh------hhhhhcc--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG------REKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      +++||+||||++.+... ..+...+.+.......      ..+....  +....+..+.+....-...+.+++.....+.
T Consensus         1 ~a~FD~DgTL~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~   79 (202)
T TIGR01490         1 LAFFDFDGTLTAKDTLF-IFLKFLASKNILFEELRLPKVLARFEFFLNRGLDYMAYYRAFALDALAGLLEEDVRAIVEEF   79 (202)
T ss_pred             CeEEccCCCCCCCchHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            37999999999975433 2233333322111000      0011111  1122333333332222233455554444444


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce-EEe-------cc---ccCCCCCCh
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVG-------SD---EVRTGKPSP  151 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~-i~~-------~~---~~~~~kp~~  151 (260)
                      +...+ ...++|++.++++.++++|++++++|++....++..+ +.+|+..+|.. +..       +.   ....++++.
T Consensus        80 ~~~~~-~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~-~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~  157 (202)
T TIGR01490        80 VNQKI-ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLA-RILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKV  157 (202)
T ss_pred             HHHHH-HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCcceEecceEEcCCCEEeCCccCCCCCChHHH
Confidence            44332 3578999999999999999999999999999999888 88898877654 221       11   112345667


Q ss_pred             HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ..+++.+++.++++++++++|||.+|+++++.+|..++..
T Consensus       158 ~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~  197 (202)
T TIGR01490       158 HALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVN  197 (202)
T ss_pred             HHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeC
Confidence            7899999999999999999999999999999999876544

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=99.75  E-value=2.8e-18  Score=139.11  Aligned_cols=121  Identities=26%  Similarity=0.332  Sum_probs=92.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEE---eccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV---GSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~---~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      ++++.++++.|+++|. ++++||.+............+...+|+.+.   +.+....+||+|..+..++++++++|++++
T Consensus       145 y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~~~~~~~l  223 (279)
T TIGR01452       145 YAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYMFECITENFSIDPARTL  223 (279)
T ss_pred             HHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHHHHHHHHHHhCCceeccCCCCHHHHHHHHHHhCCChhhEE
Confidence            6789999999998886 788888876443111102344545555443   344556789999999999999999999999


Q ss_pred             EEecCH-hhHHHHHHcCCeEEEEcCCCCcccc-c---------cccchhccccccc
Q 024956          170 VIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y---------TAADEVINSLLDL  214 (260)
Q Consensus       170 ~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~-~---------~~~~~~v~~~~~l  214 (260)
                      ||||++ .|+.+|+++|+.++++.+|....+. .         ..|+++++++.+|
T Consensus       224 mIGD~~~tDI~~A~~aGi~si~V~~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l  279 (279)
T TIGR01452       224 MVGDRLETDILFGHRCGMTTVLVLSGVSRLEEAQEYLAAGQHDLVPDYVVESLADL  279 (279)
T ss_pred             EECCChHHHHHHHHHcCCcEEEECCCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence            999996 9999999999999999987554322 1         3588888888764

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=99.74  E-value=1e-17  Score=130.66  Aligned_cols=192  Identities=16%  Similarity=0.157  Sum_probs=116.8

Q ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhc--cCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhcc
Q 024956           12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI--VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK   89 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (260)
                      |+||+||||++.+... .    +++.+..+...+....+  -..+..+.++..++......     .+...+.+.   ..
T Consensus         2 ~~fDFDgTit~~d~~~-~----~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~~~~~-----~~~~~~~~~---~~   68 (214)
T TIGR03333         2 IICDFDGTITNNDNII-S----IMKQFAPPEWEALKDGVLSKTLSIQEGVGRMFGLLPSSL-----KEEITSFVL---ET   68 (214)
T ss_pred             EEeccCCCCCcchhHH-H----HHHHhCcHHHHHHHHHHHcCCccHHHHHHHHHhhCCCch-----HHHHHHHHH---hc
Confidence            7999999999876432 1    12222211001111111  12235555555555443221     122222222   24


Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc---ceEEeccccCCCCCChHHH----------HH
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF---SVIVGSDEVRTGKPSPDIF----------LE  156 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f---~~i~~~~~~~~~kp~~~~~----------~~  156 (260)
                      .+++||+.++++.|+++|++++|+|++....++..+ +.++....+   +.++.++.....+|.+..+          ..
T Consensus        69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il-~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~~  147 (214)
T TIGR03333        69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKPS  147 (214)
T ss_pred             CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHH-HhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCCCHHH
Confidence            789999999999999999999999999999888888 554433222   2344444444556655443          46


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhcccccccccccc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++++++..+++++||||+.+|+.+|+.+++  +.+... ....+....+.....++.++.+.+.
T Consensus       148 ~l~~~~~~~~~~i~iGDg~~D~~~a~~Ad~--~~ar~~l~~~~~~~~~~~~~~~~f~di~~~l~  209 (214)
T TIGR03333       148 LIRKLSEPNDYHIVIGDSVTDVEAAKQSDL--CFARDYLLNECEELGLNHAPFQDFYDVRKELE  209 (214)
T ss_pred             HHHHHhhcCCcEEEEeCCHHHHHHHHhCCe--eEehHHHHHHHHHcCCCccCcCCHHHHHHHHH
Confidence            777777788999999999999999999998  333221 1111223345666677777665543

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.74  E-value=5.7e-18  Score=125.84  Aligned_cols=98  Identities=12%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      .+..|++.|++++|+|+.....++..+ +.+++..+|+.         .||+|+.++.++++++++++++++|||+.||+
T Consensus        42 ~~~~L~~~Gi~laIiT~k~~~~~~~~l-~~lgi~~~f~~---------~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi  111 (169)
T TIGR02726        42 GVIVLQLCGIDVAIITSKKSGAVRHRA-EELKIKRFHEG---------IKKKTEPYAQMLEEMNISDAEVCYVGDDLVDL  111 (169)
T ss_pred             HHHHHHHCCCEEEEEECCCcHHHHHHH-HHCCCcEEEec---------CCCCHHHHHHHHHHcCcCHHHEEEECCCHHHH
Confidence            567788899999999999999999999 88999877763         27889999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN  209 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~  209 (260)
                      .+++.+|+..++.+.   .+..+..+++++.
T Consensus       112 ~~~~~ag~~~am~nA---~~~lk~~A~~I~~  139 (169)
T TIGR02726       112 SMMKRVGLAVAVGDA---VADVKEAAAYVTT  139 (169)
T ss_pred             HHHHHCCCeEECcCc---hHHHHHhCCEEcC
Confidence            999999999888876   4556677777665

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=99.71  E-value=1.9e-16  Score=120.02  Aligned_cols=95  Identities=21%  Similarity=0.238  Sum_probs=78.0

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc------------ccCCCCCChHHHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------------EVRTGKPSPDIFLE  156 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~------------~~~~~kp~~~~~~~  156 (260)
                      .+.++|++.++++.++++|++++++|++....++..+ +.+|+..++...+..+            ....+..|+..+++
T Consensus        71 ~~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~-~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~  149 (177)
T TIGR01488        71 QVALRPGARELISWLKERGIDTVIVSGGFDFFVEPVA-EKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE  149 (177)
T ss_pred             cCCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence            4668999999999999999999999999999999888 8788887665443321            12234455678888


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      +++++++++++++||||+.+|+.+++.+
T Consensus       150 ~~~~~~~~~~~~~~iGDs~~D~~~~~~a  177 (177)
T TIGR01488       150 LLEESKITLKKIIAVGDSVNDLPMLKLA  177 (177)
T ss_pred             HHHHhCCCHHHEEEEeCCHHHHHHHhcC
Confidence            8999999999999999999999999764

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.71  E-value=2.7e-17  Score=121.36  Aligned_cols=101  Identities=18%  Similarity=0.183  Sum_probs=83.2

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      ++++|+++|++++|+||.....+...+ +.+|+..+|+.         .+|+++.+..+++++++++++++||||+.+|+
T Consensus        36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l-~~~gi~~~~~~---------~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~  105 (154)
T TIGR01670        36 GIRCALKSGIEVAIITGRKAKLVEDRC-KTLGITHLYQG---------QSNKLIAFSDILEKLALAPENVAYIGDDLIDW  105 (154)
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHH-HHcCCCEEEec---------ccchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence            799999999999999999999888888 88898766542         36889999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL  212 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~  212 (260)
                      .+++.+|+. +.+...  ....+..+++++.+..
T Consensus       106 ~~~~~ag~~-~~v~~~--~~~~~~~a~~i~~~~~  136 (154)
T TIGR01670       106 PVMEKVGLS-VAVADA--HPLLIPRADYVTRIAG  136 (154)
T ss_pred             HHHHHCCCe-EecCCc--CHHHHHhCCEEecCCC
Confidence            999999997 555442  2334555666665543

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.70  E-value=2.1e-16  Score=130.12  Aligned_cols=101  Identities=17%  Similarity=0.240  Sum_probs=85.8

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCC---------------hHhHHHHHHhhcCCccccceEE-e----ccccCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIV-G----SDEVRTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~gl~~~f~~i~-~----~~~~~~~kp  149 (260)
                      ..++|++.++|++|+++|++++|+||.+               ...+...+ +.+++.  |+.++ +    +++....||
T Consensus        29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL-~~~gl~--fd~i~i~~~~~sd~~~~rKP  105 (354)
T PRK05446         29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF-ESQGIK--FDEVLICPHFPEDNCSCRKP  105 (354)
T ss_pred             ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH-HHcCCc--eeeEEEeCCcCcccCCCCCC
Confidence            6789999999999999999999999952               33344455 666773  66654 3    356678999


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ++..+..+++.+++++++++||||+.+|+.+|+++|+.+++++.
T Consensus       106 ~p~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~aGi~~I~v~~  149 (354)
T PRK05446        106 KTGLVEEYLAEGAIDLANSYVIGDRETDVQLAENMGIKGIRYAR  149 (354)
T ss_pred             CHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEC
Confidence            99999999999999999999999999999999999999999976

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.70  E-value=8.4e-17  Score=114.91  Aligned_cols=88  Identities=19%  Similarity=0.166  Sum_probs=76.8

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcC-------CccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHG-------WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~g-------l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .++||+.++|++|+++|++++++|++ ....+...+ +..+       +..+|+.+++++.    +|+|+.+..+++++|
T Consensus        29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l-~~~~~~~~i~~l~~~f~~~~~~~~----~pkp~~~~~a~~~lg  103 (128)
T TIGR01681        29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELL-KIFEDFGIIFPLAEYFDPLTIGYW----LPKSPRLVEIALKLN  103 (128)
T ss_pred             HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHH-HhccccccchhhHhhhhhhhhcCC----CcHHHHHHHHHHHhc
Confidence            57899999999999999999999999 777777777 7677       7888888887753    578899999999999


Q ss_pred             --CCCCcEEEEecCHhhHHHHHH
Q 024956          163 --MEPSSSLVIEDSVIGVVAGKA  183 (260)
Q Consensus       163 --~~~~~~~~vGD~~~Dv~~a~~  183 (260)
                        +.|++++||||++.|+...+.
T Consensus       104 ~~~~p~~~l~igDs~~n~~~~~~  126 (128)
T TIGR01681       104 GVLKPKSILFVDDRPDNNEEVDY  126 (128)
T ss_pred             CCCCcceEEEECCCHhHHHHHHh
Confidence              999999999999999877653

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=99.69  E-value=6.9e-17  Score=126.18  Aligned_cols=90  Identities=31%  Similarity=0.430  Sum_probs=77.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      .+++|++.++|++|++.|++++++|+.......... +.+|+.   +..+.+...  +||.+..+..+++.+++++++|+
T Consensus       126 d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~-~~lgi~---~~~v~a~~~--~kP~~k~~~~~i~~l~~~~~~v~  199 (215)
T PF00702_consen  126 DPLRPGAKEALQELKEAGIKVAILTGDNESTASAIA-KQLGIF---DSIVFARVI--GKPEPKIFLRIIKELQVKPGEVA  199 (215)
T ss_dssp             EEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHH-HHTTSC---SEEEEESHE--TTTHHHHHHHHHHHHTCTGGGEE
T ss_pred             CcchhhhhhhhhhhhccCcceeeeeccccccccccc-cccccc---ccccccccc--ccccchhHHHHHHHHhcCCCEEE
Confidence            477899999999999999999999999888888787 888883   333332222  78888899999999999999999


Q ss_pred             EEecCHhhHHHHHHcC
Q 024956          170 VIEDSVIGVVAGKAAG  185 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G  185 (260)
                      ||||+.||+.|++.+|
T Consensus       200 ~vGDg~nD~~al~~Ag  215 (215)
T PF00702_consen  200 MVGDGVNDAPALKAAG  215 (215)
T ss_dssp             EEESSGGHHHHHHHSS
T ss_pred             EEccCHHHHHHHHhCc
Confidence            9999999999999986

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.68  E-value=6e-16  Score=120.86  Aligned_cols=98  Identities=15%  Similarity=0.135  Sum_probs=78.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCC----hHhHHHHHHhhcCC--ccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSH----RATIESKISYQHGW--NESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~----~~~~~~~l~~~~gl--~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      ...++||+.++|+.|+++|++++++||+.    ....+..+ +.+|+  ..+|+.+++++..  .|+++.   ..+++++
T Consensus       112 ~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Ll-k~~gip~~~~f~vil~gd~~--~K~~K~---~~l~~~~  185 (237)
T PRK11009        112 FSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLA-DDFHIPADNMNPVIFAGDKP--GQYTKT---QWLKKKN  185 (237)
T ss_pred             cCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHH-HHcCCCcccceeEEEcCCCC--CCCCHH---HHHHhcC
Confidence            47789999999999999999999999964    33444444 67899  7888888887653  556553   3556666


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                      +    ++||||+.+|+.+|+++|+.++.+.++..
T Consensus       186 i----~I~IGDs~~Di~aA~~AGi~~I~v~~G~~  215 (237)
T PRK11009        186 I----RIFYGDSDNDITAAREAGARGIRILRAAN  215 (237)
T ss_pred             C----eEEEcCCHHHHHHHHHcCCcEEEEecCCC
Confidence            5    89999999999999999999999998644

>PRK10444 UMP phosphatase; Provisional

Probab=99.67  E-value=1.6e-16  Score=126.03  Aligned_cols=73  Identities=23%  Similarity=0.337  Sum_probs=62.4

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL  214 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l  214 (260)
                      +....+||++..+..+++++++++++++||||++ +|+.+|+++|+.++++.+|....+.    ...|+++++++.++
T Consensus       168 ~~~~~gKP~~~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~~G~~~~~~l~~~~~~pd~~~~sl~el  245 (248)
T PRK10444        168 KPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSTLDDIDSMPFRPSWIYPSVADI  245 (248)
T ss_pred             CccccCCCCHHHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEECCCCCCHHHHhcCCCCCCEEECCHHHh
Confidence            3444689999999999999999999999999997 8999999999999999987554333    24688999998886

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.67  E-value=1.1e-15  Score=109.31  Aligned_cols=92  Identities=24%  Similarity=0.397  Sum_probs=81.3

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEE
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI  171 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~v  171 (260)
                      ..|.+.+.+.+++.+|++++|+||+....+.... ..+|+    +.++.     ..||.+..|+++++++++++++|+||
T Consensus        47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~-~~l~v----~fi~~-----A~KP~~~~fr~Al~~m~l~~~~vvmV  116 (175)
T COG2179          47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAA-EKLGV----PFIYR-----AKKPFGRAFRRALKEMNLPPEEVVMV  116 (175)
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhh-hhcCC----ceeec-----ccCccHHHHHHHHHHcCCChhHEEEE
Confidence            3456678889999999999999999999888777 77776    45543     48999999999999999999999999


Q ss_pred             ecCH-hhHHHHHHcCCeEEEEcC
Q 024956          172 EDSV-IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       172 GD~~-~Dv~~a~~~G~~~i~~~~  193 (260)
                      ||.. .|+.+++.+|+.+|+|..
T Consensus       117 GDqL~TDVlggnr~G~~tIlV~P  139 (175)
T COG2179         117 GDQLFTDVLGGNRAGMRTILVEP  139 (175)
T ss_pred             cchhhhhhhcccccCcEEEEEEE
Confidence            9999 899999999999999976

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.65  E-value=2.8e-16  Score=125.19  Aligned_cols=79  Identities=27%  Similarity=0.376  Sum_probs=63.8

Q ss_pred             ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc--c--cccchhccc
Q 024956          136 SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR--Y--TAADEVINS  210 (260)
Q Consensus       136 ~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~--~--~~~~~~v~~  210 (260)
                      +...+.+....+||++..++.+++++++++++++||||++ +|+.+|+++|+.++++.++......  .  ..|++++++
T Consensus       166 ~~~~~~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~G~~~~~~~~~~~~~pd~~v~~  245 (249)
T TIGR01457       166 EVATGVKPVYIGKPNAIIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHTGVTKAEEVAGLPIAPTHVVSS  245 (249)
T ss_pred             HHHhCCCccccCCChHHHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcCCCCCHHHHhcCCCCCCEEeCC
Confidence            3344555666789999999999999999999999999997 8999999999999999986543322  1  357788877


Q ss_pred             cccc
Q 024956          211 LLDL  214 (260)
Q Consensus       211 ~~~l  214 (260)
                      +.++
T Consensus       246 l~~~  249 (249)
T TIGR01457       246 LAEW  249 (249)
T ss_pred             hhhC
Confidence            7654

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PRK11590 hypothetical protein; Provisional

Probab=99.64  E-value=1.7e-14  Score=112.24  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=105.3

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh-hhhhhccCCCHHHHHHH-------HHHHhCCCCCHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAI-------IVEDYGLPCAKHEFVNEV   79 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~   79 (260)
                      ..|+++||+||||++.+ ........++++.+..... ......+|.......+.       ++-......+.+++ +.+
T Consensus         5 ~~k~~iFD~DGTL~~~d-~~~~~~~~~~~~~g~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~   82 (211)
T PRK11590          5 ERRVVFFDLDGTLHQQD-MFGSFLRYLLRRQPLNLLLVLPLLPVIGLGLLVKGRAARWPMSLLLWGCTFGHSEARL-QAL   82 (211)
T ss_pred             cceEEEEecCCCCcccc-hHHHHHHHHHHhcchhhHHHhHHHHHhccCcccchhhhhhhHHHHHHHHHcCCCHHHH-HHH
Confidence            45799999999999543 3333333333666644322 34444455433322111       11111111123332 233


Q ss_pred             HHHHHhhhc-cCCCCccHHHHH-HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc--------ccCCCCC
Q 024956           80 YSMFSDHLC-KVKALPGANRLI-KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--------EVRTGKP  149 (260)
Q Consensus        80 ~~~~~~~~~-~~~~~~~~~~~l-~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~--------~~~~~kp  149 (260)
                      .+.+.+.+. ...++|++.+.| +.+++.|++++|+|++....++..+ ..+++.. .+.+++++        ..+...-
T Consensus        83 ~~~f~~~~~~~~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il-~~l~~~~-~~~~i~t~l~~~~tg~~~g~~c~  160 (211)
T PRK11590         83 EADFVRWFRDNVTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVY-FDTPWLP-RVNLIASQMQRRYGGWVLTLRCL  160 (211)
T ss_pred             HHHHHHHHHHhCcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHccccc-cCceEEEEEEEEEccEECCccCC
Confidence            333333232 257799999999 5788899999999999999998888 7777522 23333322        1111111


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ..+=...+.+.++.+.+.+.+.|||.+|+.|...++.+.+ +|.
T Consensus       161 g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~-vnp  203 (211)
T PRK11590        161 GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWR-VTP  203 (211)
T ss_pred             ChHHHHHHHHHhCCCcceEEEecCCcccHHHHHhCCCCEE-ECc
Confidence            1222333444456677788999999999999999998654 443

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.64  E-value=8.3e-17  Score=122.21  Aligned_cols=108  Identities=17%  Similarity=0.225  Sum_probs=86.1

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      .++.|+++|++++++|+.....+...+ +.+|+..+|+    +     .++++..+..+++++++++++++||||+.+|+
T Consensus        56 ~i~~L~~~Gi~v~I~T~~~~~~v~~~l-~~lgl~~~f~----g-----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~  125 (183)
T PRK09484         56 GIRCLLTSGIEVAIITGRKSKLVEDRM-TTLGITHLYQ----G-----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDW  125 (183)
T ss_pred             HHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCceeec----C-----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence            667777899999999999999998888 8888876654    1     35677999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcc------cccccccccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN------SLLDLRPEKW  219 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~------~~~~l~~~~~  219 (260)
                      .+++.+|+.++ +..  ........+++++.      .+.++.+.++
T Consensus       126 ~~a~~aG~~~~-v~~--~~~~~~~~a~~v~~~~~g~g~~~el~~~i~  169 (183)
T PRK09484        126 PVMEKVGLSVA-VAD--AHPLLLPRADYVTRIAGGRGAVREVCDLLL  169 (183)
T ss_pred             HHHHHCCCeEe-cCC--hhHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence            99999999854 432  22333566778875      5667666654

>PLN02645 phosphoglycolate phosphatase

Probab=99.64  E-value=2e-16  Score=130.01  Aligned_cols=109  Identities=21%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             cEEEEeCCChHh-HHHHHHhhcCCccccceEEecccc---CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHH
Q 024956          109 PMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEV---RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKA  183 (260)
Q Consensus       109 ~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i~~~~~~---~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~  183 (260)
                      ..+++||.+... ....+ ...|...+|+.+......   ..+||+|..+..+++++++++++++||||++ +|+.+|++
T Consensus       188 ~~~i~tn~d~~~~~~~~~-~~~g~g~~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~A~~  266 (311)
T PLN02645        188 CLFIATNRDAVTHLTDAQ-EWAGAGSMVGAIKGSTEREPLVVGKPSTFMMDYLANKFGIEKSQICMVGDRLDTDILFGQN  266 (311)
T ss_pred             CEEEEeCCCCCCCCCCCC-CccchHHHHHHHHHHhCCCcccCCCChHHHHHHHHHHcCCCcccEEEEcCCcHHHHHHHHH
Confidence            466666666533 11122 233444455555544332   2469999999999999999999999999998 99999999


Q ss_pred             cCCeEEEEcCCCCcccc------ccccchhccccccccccc
Q 024956          184 AGMEVVAVPSLPKQTHR------YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       184 ~G~~~i~~~~~~~~~~~------~~~~~~~v~~~~~l~~~~  218 (260)
                      +|+.++++.+|....+.      ...|+++++++.+|.+.+
T Consensus       267 aG~~~ilV~~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~  307 (311)
T PLN02645        267 GGCKTLLVLSGVTSESMLLSPENKIQPDFYTSKISDFLTLK  307 (311)
T ss_pred             cCCCEEEEcCCCCCHHHHHhccCCCCCCEEECCHHHHHHHh
Confidence            99999999886543322      145899999999887654

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=99.62  E-value=5.8e-14  Score=101.57  Aligned_cols=122  Identities=16%  Similarity=0.115  Sum_probs=94.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      +..++|++.+.|++.++.|++++|+|+++...++-.+.  ....+..+|+..+...  .-.|....-|.+++...|++|.
T Consensus       101 kahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~lfsGyfDtt--iG~KrE~~SY~kIa~~iGl~p~  178 (229)
T COG4229         101 KAHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNSLFSGYFDTT--IGKKRESQSYAKIAGDIGLPPA  178 (229)
T ss_pred             ccccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHhhhcceeecc--ccccccchhHHHHHHhcCCCch
Confidence            57899999999999999999999999999887664441  2223556666666542  2255666889999999999999


Q ss_pred             cEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956          167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL  212 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~  212 (260)
                      +++|+.|+++.+.+|+.+|+.++++.+..+.+-.......+.+++.
T Consensus       179 eilFLSDn~~EL~AA~~vGl~t~l~~R~g~~P~~d~~~~~~~~sf~  224 (229)
T COG4229         179 EILFLSDNPEELKAAAGVGLATGLAVRPGNAPVPDGQGFLVYKSFE  224 (229)
T ss_pred             heEEecCCHHHHHHHHhcchheeeeecCCCCCCCCCcCceeeechh
Confidence            9999999999999999999999999885544443444455555554

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=99.61  E-value=4.9e-15  Score=120.04  Aligned_cols=118  Identities=14%  Similarity=0.089  Sum_probs=76.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCCh-Hh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHR-AT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~-~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ++++.++++.++..+..+.++++... ..   ....+.+.+++...+.....-+....+..|+.+++.+++++|++++++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~  218 (272)
T PRK10530        139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNV  218 (272)
T ss_pred             eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHe
Confidence            45666777777766666666665432 11   112221334432111100011333445567799999999999999999


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ++|||+.||++|++.+|+.+++-+.   .+..+..|++++++..+
T Consensus       219 i~~GD~~NDi~m~~~ag~~vamgna---~~~lk~~Ad~v~~~n~~  260 (272)
T PRK10530        219 VAFGDNFNDISMLEAAGLGVAMGNA---DDAVKARADLVIGDNTT  260 (272)
T ss_pred             EEeCCChhhHHHHHhcCceEEecCc---hHHHHHhCCEEEecCCC
Confidence            9999999999999999986555443   45557778888876554

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.60  E-value=1.4e-14  Score=108.71  Aligned_cols=99  Identities=19%  Similarity=0.241  Sum_probs=82.9

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCC-hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~-~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ..++|++.++|++|++.|++++++||+. ...+...+ +.+++..+         .+..||+++.+..++++++++++++
T Consensus        42 ~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~-~~~gl~~~---------~~~~KP~p~~~~~~l~~~~~~~~~~  111 (170)
T TIGR01668        42 NEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVE-KALGIPVL---------PHAVKPPGCAFRRAHPEMGLTSEQV  111 (170)
T ss_pred             CCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHH-HHcCCEEE---------cCCCCCChHHHHHHHHHcCCCHHHE
Confidence            3568899999999999999999999998 45555454 55665322         1347999999999999999999999


Q ss_pred             EEEecCH-hhHHHHHHcCCeEEEEcCCCCcc
Q 024956          169 LVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT  198 (260)
Q Consensus       169 ~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~  198 (260)
                      +||||+. .|+.+|+++|+.+++++++....
T Consensus       112 l~IGDs~~~Di~aA~~aGi~~i~v~~g~~~~  142 (170)
T TIGR01668       112 AVVGDRLFTDVMGGNRNGSYTILVEPLVHPD  142 (170)
T ss_pred             EEECCcchHHHHHHHHcCCeEEEEccCcCCc
Confidence            9999998 79999999999999999865443

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PRK08238 hypothetical protein; Validated

Probab=99.56  E-value=3.7e-14  Score=121.96  Aligned_cols=135  Identities=13%  Similarity=0.073  Sum_probs=93.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ..++.|++.+.+++++++|++++++|++....++..+ +.+|+   |+.++++++....||++.. ..+.+.++  .+++
T Consensus        70 ~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~-~~lGl---Fd~Vigsd~~~~~kg~~K~-~~l~~~l~--~~~~  142 (479)
T PRK08238         70 TLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVA-AHLGL---FDGVFASDGTTNLKGAAKA-AALVEAFG--ERGF  142 (479)
T ss_pred             hCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCC---CCEEEeCCCccccCCchHH-HHHHHHhC--ccCe
Confidence            3567899999999999999999999999999999888 77877   8999999877666665432 23445554  3568


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccc---cccCCCCCcccccCC
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP---EKWGLPPFQDWIEGT  231 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~---~~~~l~~~~~~~~~~  231 (260)
                      +|+||+.+|+.+++.+| ..+.++.+..-........+.+..+.....   ...++-...+|+.+.
T Consensus       143 ~yvGDS~~Dlp~~~~A~-~av~Vn~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~  207 (479)
T PRK08238        143 DYAGNSAADLPVWAAAR-RAIVVGASPGVARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNL  207 (479)
T ss_pred             eEecCCHHHHHHHHhCC-CeEEECCCHHHHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHH
Confidence            99999999999999999 566777632222222233344444433332   233444556665543

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=99.55  E-value=1.7e-14  Score=114.13  Aligned_cols=75  Identities=27%  Similarity=0.405  Sum_probs=65.0

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhcccccccccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l~~~~~  219 (260)
                      -.+||++.+++.+++.++.++++++||||++ +||.+++++|+.+++|.+|....+.    ...++++++++.++...+.
T Consensus       187 ~~GKP~~~i~~~al~~~~~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~TGv~~~~~~~~~~~~p~~v~~sl~~~~~~~~  266 (269)
T COG0647         187 VIGKPSPAIYEAALEKLGLDRSEVLMVGDRLDTDILGAKAAGLDTLLVLTGVSSAEDLDRAEVKPTYVVDSLAELITALK  266 (269)
T ss_pred             ccCCCCHHHHHHHHHHhCCCcccEEEEcCCchhhHHHHHHcCCCEEEEccCCCChhhhhhhccCCcchHhhHHHHHhhhh
Confidence            4799999999999999999999999999999 7999999999999999997553333    4568899999988776554

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=99.55  E-value=2.8e-13  Score=105.33  Aligned_cols=169  Identities=17%  Similarity=0.157  Sum_probs=113.3

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-CCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhhhc
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSDHLC   88 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   88 (260)
                      +|+||+|+||+|.+...     .+++.++.......+..... ....+.+..+++.+... .+.++        +.+.+.
T Consensus         2 LvvfDFD~TIvd~dsd~-----~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~--------I~~~l~   68 (234)
T PF06888_consen    2 LVVFDFDHTIVDQDSDD-----WVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPED--------IRDALR   68 (234)
T ss_pred             EEEEeCCCCccCCccHH-----HHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHH--------HHHHHH
Confidence            58999999999875432     12334443332233322222 23445556666554321 22222        233346


Q ss_pred             cCCCCccHHHHHHHH--HHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----c-----------CC-CCC-
Q 024956           89 KVKALPGANRLIKHL--SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----V-----------RT-GKP-  149 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l--~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----~-----------~~-~kp-  149 (260)
                      .+++.|++.++++.+  .+.|+.++|+|++...+++..| +..|+...|+.|++...    .           .+ ..| 
T Consensus        69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL-~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~  147 (234)
T PF06888_consen   69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETIL-EHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPP  147 (234)
T ss_pred             cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHH-HhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCC
Confidence            789999999999999  4579999999999999999999 99999999988876421    0           01 112 


Q ss_pred             ---ChHHHHHHHHH---cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 ---SPDIFLEAAKR---LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 ---~~~~~~~~l~~---l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                         |...++++++.   -|++.++++||||+.||+-++..++-.-+.+.+
T Consensus       148 NmCK~~il~~~~~~~~~~g~~~~rviYiGDG~nD~Cp~~~L~~~D~v~~R  197 (234)
T PF06888_consen  148 NMCKGKILERLLQEQAQRGVPYDRVIYIGDGRNDFCPALRLRPRDVVFPR  197 (234)
T ss_pred             ccchHHHHHHHHHHHhhcCCCcceEEEECCCCCCcCcccccCCCCEEecC
Confidence               34666777766   367889999999999999999988765444443

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=99.54  E-value=5.4e-15  Score=116.80  Aligned_cols=69  Identities=19%  Similarity=0.144  Sum_probs=57.5

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +....+.+|+.+++.+++.++++++++++|||+.||++|++.+|+.+++-|.   .+..+..+++++.+..+
T Consensus       150 ei~~~~~~Kg~al~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~vam~Na---~~~vk~~a~~v~~~n~~  218 (230)
T PRK01158        150 HIKSPGVNKGTGLKKLAELMGIDPEEVAAIGDSENDLEMFEVAGFGVAVANA---DEELKEAADYVTEKSYG  218 (230)
T ss_pred             EEeeCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhcCceEEecCc---cHHHHHhcceEecCCCc
Confidence            3445667788999999999999999999999999999999999998877766   56667778887765443

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.54  E-value=3.5e-14  Score=103.89  Aligned_cols=195  Identities=15%  Similarity=0.134  Sum_probs=117.9

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      ....++|+||+|-|++..     +.+.++....|..-...+. +..++... .+-+.+..+..+-   ........... 
T Consensus        13 ~~~~~aVcFDvDSTvi~e-----EgIdelA~~~G~~~~Va~~T~rAMng~~-~F~eaL~~Rl~ll---qp~~~qv~~~v-   82 (227)
T KOG1615|consen   13 WRSADAVCFDVDSTVIQE-----EGIDELAAYCGVGEAVAEVTRRAMNGEA-DFQEALAARLSLL---QPLQVQVEQFV-   82 (227)
T ss_pred             HHhcCeEEEecCcchhHH-----hhHHHHHHHhCchHHHHHHHHHHhCCCC-cHHHHHHHHHHHh---cccHHHHHHHH-
Confidence            346789999999999864     3445555555543222222 22222211 1222233333221   11111111111 


Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--ccce--------EEec-c---ccCCCCCC
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSV--------IVGS-D---EVRTGKPS  150 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f~~--------i~~~-~---~~~~~kp~  150 (260)
                       .-+..++.||+++++..|+++|.+++++|++....+.... +.+|+..  .+..        -+.+ +   ....+--+
T Consensus        83 -~~~k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va-~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggK  160 (227)
T KOG1615|consen   83 -IKQKPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVA-EQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGK  160 (227)
T ss_pred             -hcCCCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHhCCcHhhhhhheeeeccCCcccccccCCccccCCcc
Confidence             1246889999999999999999999999999999988877 8888764  2321        1111 1   11122234


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      ++.+..+++  +.+.+.++||||+.+|+++... +..++.+....-....+..+.+.+.++..|.
T Consensus       161 a~~i~~lrk--~~~~~~~~mvGDGatDlea~~p-a~afi~~~g~~~r~~vk~nak~~~~~f~~L~  222 (227)
T KOG1615|consen  161 AEVIALLRK--NYNYKTIVMVGDGATDLEAMPP-ADAFIGFGGNVIREGVKANAKWYVTDFYVLG  222 (227)
T ss_pred             HHHHHHHHh--CCChheeEEecCCccccccCCc-hhhhhccCCceEcHhhHhccHHHHHHHHHHc
Confidence            577777777  7788999999999999998777 4444444332223444666777777776654

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.52  E-value=6.7e-14  Score=114.97  Aligned_cols=104  Identities=17%  Similarity=0.109  Sum_probs=93.9

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEecc-------ccCCCCCChHHHHHHHHHc
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSD-------EVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~-------~~~~~kp~~~~~~~~l~~l  161 (260)
                      ..++|++.+++++|+++|++++++|+++....+..+ +.+++.. +|+.+++.+       ..+..||+|..+..+++++
T Consensus       186 ~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l-~~l~~~~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~  264 (300)
T PHA02530        186 DKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTV-EWLRQTDIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK  264 (300)
T ss_pred             CCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHH-HHHHHcCCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH
Confidence            357899999999999999999999999999888888 8888886 899888887       3556899999999999999


Q ss_pred             CC-CCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          162 NM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       162 ~~-~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +. ++++++||||+.+|+.+|+++|+.++++.+|
T Consensus       265 ~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~~g  298 (300)
T PHA02530        265 IAPKYDVLLAVDDRDQVVDMWRRIGLECWQVAPG  298 (300)
T ss_pred             hccCceEEEEEcCcHHHHHHHHHhCCeEEEecCC
Confidence            88 6799999999999999999999999999774

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=99.52  E-value=2.7e-13  Score=100.52  Aligned_cols=123  Identities=23%  Similarity=0.288  Sum_probs=92.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEecc-----ccCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGSD-----EVRTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~~-----~~~~~kp  149 (260)
                      ..+.|++.+.+..|++.|++++++||.+-               ..+...+ +..|.  .|+.++.+.     .+.+.||
T Consensus        30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l-~~~gv--~id~i~~Cph~p~~~c~cRKP  106 (181)
T COG0241          30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKIL-ASQGV--KIDGILYCPHHPEDNCDCRKP  106 (181)
T ss_pred             hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHH-HHcCC--ccceEEECCCCCCCCCcccCC
Confidence            46789999999999999999999999522               2233444 44444  467776653     3578999


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhcccccccc
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVINSLLDLR  215 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v~~~~~l~  215 (260)
                      ++..+..+++++++++++.++|||+..|+++|.++|+..+.+..+...... ....++...++.++.
T Consensus       107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (181)
T COG0241         107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIKGVLVLTGIGVTTDGAGRAKWVFDSLAEFA  173 (181)
T ss_pred             ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCCceEEEcCcccccccccccccccccHHHHH
Confidence            999999999999999999999999999999999999998877763222211 223455555555544

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=99.50  E-value=2e-12  Score=102.75  Aligned_cols=95  Identities=20%  Similarity=0.268  Sum_probs=80.0

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE------EeccccCCCCCCh---------HH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI------VGSDEVRTGKPSP---------DI  153 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i------~~~~~~~~~kp~~---------~~  153 (260)
                      .+++.||+.++++.|+++|++++|+|++....++..+ +..|+...+..+      +..+....++|.|         ..
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL-~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v  197 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVL-RQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV  197 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence            6889999999999999999999999999999999999 778886555555      4344444556666         56


Q ss_pred             HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHc
Q 024956          154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       154 ~~~~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      ++...+.++  .++++|++|||+.+|+.||..+
T Consensus       198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~  230 (277)
T TIGR01544       198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGV  230 (277)
T ss_pred             HHHHHHHhCccCCcceEEEECcChhhhhHhcCC
Confidence            667888888  8999999999999999998877

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=99.49  E-value=2.9e-14  Score=112.28  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=70.3

Q ss_pred             EEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE
Q 024956          110 MALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV  188 (260)
Q Consensus       110 i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~  188 (260)
                      ..+.+..........+ +.++....+ ......+..+...+|+..++.++++++++++++++|||+.||+.|++.+|+.+
T Consensus       110 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~~GD~~NDi~m~~~ag~~v  188 (225)
T TIGR01482       110 VKMRYGIDVDTVREII-KELGLNLVAVDSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETLVCGDSENDIDLFEVPGFGV  188 (225)
T ss_pred             EEEeecCCHHHHHHHH-HhcCceEEEecCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEEEECCCHhhHHHHHhcCceE
Confidence            3444444555555555 555542110 00112234456778889999999999999999999999999999999999988


Q ss_pred             EEEcCCCCccccccccchhcccccc
Q 024956          189 VAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       189 i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ++-|.   .+..+..+++++.+..+
T Consensus       189 am~Na---~~~~k~~A~~vt~~~~~  210 (225)
T TIGR01482       189 AVANA---QPELKEWADYVTESPYG  210 (225)
T ss_pred             EcCCh---hHHHHHhcCeecCCCCC
Confidence            87766   56667788888765444

catalyze the same reaction as SPP.

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.48  E-value=6.7e-14  Score=102.61  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=85.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .+.++||+.++|++|+ ++++++|+|++....++..+ +.+++.. +|+.+++++++...||.   +.+.+++++.+|++
T Consensus        43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il-~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l~~~p~~  117 (148)
T smart00577       43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVL-DLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLLGRDLSN  117 (148)
T ss_pred             EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHH-HHhCcCCCEeeeEEECccccccCCe---EeecHHHcCCChhc
Confidence            4678999999999998 56999999999999999888 8888854 56999999999888886   89999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEE
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      |++|||+++|+.++..+|+..-
T Consensus       118 ~i~i~Ds~~~~~aa~~ngI~i~  139 (148)
T smart00577      118 VIIIDDSPDSWPFHPENLIPIK  139 (148)
T ss_pred             EEEEECCHHHhhcCccCEEEec
Confidence            9999999999999999987543

>TIGR01686 FkbH FkbH-like domain

Probab=99.48  E-value=1.1e-13  Score=114.39  Aligned_cols=90  Identities=22%  Similarity=0.152  Sum_probs=81.2

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh----cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ----HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~----~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      +++++.++|++|+++|+.++++|++....+...+ +.    +++..+|+.+...     .||+++.+..+++++|+.+++
T Consensus        32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l-~~~~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l~i~~~~  105 (320)
T TIGR01686        32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVF-ERRKDFILQAEDFDARSIN-----WGPKSESLRKIAKKLNLGTDS  105 (320)
T ss_pred             cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHH-HhCccccCcHHHeeEEEEe-----cCchHHHHHHHHHHhCCCcCc
Confidence            4789999999999999999999999999999888 76    7788888887554     579999999999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCe
Q 024956          168 SLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      ++||||++.|+.+++...-.
T Consensus       106 ~vfidD~~~d~~~~~~~lp~  125 (320)
T TIGR01686       106 FLFIDDNPAERANVKITLPV  125 (320)
T ss_pred             EEEECCCHHHHHHHHHHCCC
Confidence            99999999999999997753

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=99.48  E-value=4.1e-12  Score=98.49  Aligned_cols=100  Identities=11%  Similarity=0.053  Sum_probs=67.4

Q ss_pred             cCCCCccHHHHHH-HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc----c----cCCCCCChHHHHHHHH
Q 024956           89 KVKALPGANRLIK-HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----E----VRTGKPSPDIFLEAAK  159 (260)
Q Consensus        89 ~~~~~~~~~~~l~-~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~----~----~~~~kp~~~~~~~~l~  159 (260)
                      ...++|++.+.|+ .++++|++++|+|++....++... +..++... +.+++++    +    .+...-..+=...+.+
T Consensus        92 ~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia-~~~~~~~~-~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~~  169 (210)
T TIGR01545        92 KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY-FDSNFIHR-LNLIASQIERGNGGWVLPLRCLGHEKVAQLEQ  169 (210)
T ss_pred             hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH-Hhcccccc-CcEEEEEeEEeCCceEcCccCCChHHHHHHHH
Confidence            3468999999996 788899999999999999888777 55444221 2233322    1    1111111122333334


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      .++.+.+.+.+.|||.+|+.|...++.+.+.
T Consensus       170 ~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~V  200 (210)
T TIGR01545       170 KIGSPLKLYSGYSDSKQDNPLLAFCEHRWRV  200 (210)
T ss_pred             HhCCChhheEEecCCcccHHHHHhCCCcEEE
Confidence            4565667889999999999999999986543

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=99.46  E-value=2.8e-12  Score=105.90  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=59.3

Q ss_pred             CCCCCChHHHHHHHHHc--------CC-----CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc-cc--ccccchh
Q 024956          145 RTGKPSPDIFLEAAKRL--------NM-----EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HR--YTAADEV  207 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l--------~~-----~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~-~~--~~~~~~~  207 (260)
                      ..+||++..|+.+++.+        +.     ++++++||||++ +|+.+|+++|+.++++.+|.... +.  ...|+++
T Consensus       230 ~~GKP~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~tG~~~~~~~~~~~~p~~v  309 (321)
T TIGR01456       230 TLGKPTKLTYDFAEDVLIDWEKRLSGTKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKTGVYNGGDDLKECKPTLI  309 (321)
T ss_pred             EcCCCChHHHHHHHHHHHHHHhhhccccccCCChheEEEEcCChhhhhhhHHhCCceEEEecccccCCCCCCCCCCCCEE
Confidence            35999999999988877        43     457999999999 89999999999999999862222 22  2457899


Q ss_pred             ccccccccccc
Q 024956          208 INSLLDLRPEK  218 (260)
Q Consensus       208 v~~~~~l~~~~  218 (260)
                      ++++.|+...+
T Consensus       310 v~~l~e~~~~i  320 (321)
T TIGR01456       310 VNDVFDAVTKI  320 (321)
T ss_pred             ECCHHHHHHHh
Confidence            99999887655

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=99.45  E-value=4.1e-13  Score=106.22  Aligned_cols=49  Identities=29%  Similarity=0.554  Sum_probs=45.5

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcE-EEEecCH-hhHHHHHHcCCeEEEEcC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSV-IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~-~~vGD~~-~Dv~~a~~~G~~~i~~~~  193 (260)
                      ..+||++..++.++++++++++++ +||||++ +|+.+|+.+|+.++++.+
T Consensus       185 ~~~KP~~~~~~~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~~  235 (236)
T TIGR01460       185 VVGKPSPAIYRAALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLVLT  235 (236)
T ss_pred             eecCCCHHHHHHHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEEec
Confidence            367999999999999999999887 9999999 899999999999999875

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=99.45  E-value=5.3e-14  Score=109.98  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             EEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956          110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       110 i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      +++++..........+ +..++..+... ..-+..+.+..|...++.+++.++++++++++|||+.||++|++.+|+.++
T Consensus       110 ~~~~~~~~~~~~~~~l-~~~~~~~~~~~-~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~ml~~ag~~va  187 (215)
T TIGR01487       110 VIMREGKDVDEVREII-KERGLNLVDSG-FAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGDSENDIDLFRVVGFKVA  187 (215)
T ss_pred             EEecCCccHHHHHHHH-HhCCeEEEecC-ceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCeEE
Confidence            3344555555566566 55555432221 112333456677899999999999999999999999999999999999888


Q ss_pred             EEcCCCCccccccccchhccccc
Q 024956          190 AVPSLPKQTHRYTAADEVINSLL  212 (260)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~v~~~~  212 (260)
                      +.+.   .++.+..+++++++..
T Consensus       188 m~na---~~~~k~~A~~v~~~~~  207 (215)
T TIGR01487       188 VANA---DDQLKEIADYVTSNPY  207 (215)
T ss_pred             cCCc---cHHHHHhCCEEcCCCC
Confidence            7766   6666777888876543

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=99.44  E-value=2.5e-13  Score=87.60  Aligned_cols=69  Identities=32%  Similarity=0.484  Sum_probs=61.6

Q ss_pred             CCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccc
Q 024956          146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL  214 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l  214 (260)
                      ++||+|..+..+++++++++++++||||+ ..|+.+|+++|+.++++.++....+.    ...|+++++++.|+
T Consensus         2 ~gKP~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~tG~~~~~~~~~~~~~pd~vv~~l~e~   75 (75)
T PF13242_consen    2 CGKPSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLTGVYSPEDLEKAEHKPDYVVDDLKEA   75 (75)
T ss_dssp             CSTTSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESSSSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred             CCCCcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECCCCCCHHHHhccCCCCCEEECCHHhC
Confidence            58999999999999999999999999999 69999999999999999997655433    35889999999875

...

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=99.43  E-value=2.8e-11  Score=99.23  Aligned_cols=103  Identities=18%  Similarity=0.226  Sum_probs=84.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc-C-------CccccceEEeccc-----------------c
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-G-------WNESFSVIVGSDE-----------------V  144 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~-g-------l~~~f~~i~~~~~-----------------~  144 (260)
                      +...|++.++|++|+++|++++|+||+....+...+ +.+ +       +..+||.++++..                 .
T Consensus       183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im-~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~~~~  261 (343)
T TIGR02244       183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGM-KYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVDVET  261 (343)
T ss_pred             hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEeCCC
Confidence            567999999999999999999999999999999888 664 6       8899999887532                 0


Q ss_pred             CCCCCC-------h-----HHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956          145 RTGKPS-------P-----DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS  193 (260)
Q Consensus       145 ~~~kp~-------~-----~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~  193 (260)
                      +..++.       +     .....+.+.+++.+++++||||++ .|+..++ .+|+.++++..
T Consensus       262 g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p  324 (343)
T TIGR02244       262 GSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP  324 (343)
T ss_pred             CcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence            111111       1     225678888999999999999999 8999998 99999999965

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=99.41  E-value=1.6e-12  Score=96.03  Aligned_cols=101  Identities=17%  Similarity=0.196  Sum_probs=72.6

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCC-ChHhHHHHHHhhcCCc----------cccceEEeccccCCCCCChHHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWN----------ESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~-~~~~~~~~l~~~~gl~----------~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                      ..+.++|++.++|++|+++|+++++.|-+ .++.+++.| +.+++.          .+|+..-...     -++...|+.
T Consensus        42 ~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L-~~l~i~~~~~~~~~~~~~F~~~eI~~-----gsK~~Hf~~  115 (169)
T PF12689_consen   42 EEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELL-KLLEIDDADGDGVPLIEYFDYLEIYP-----GSKTTHFRR  115 (169)
T ss_dssp             -EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHH-HHTT-C----------CCECEEEESS-----S-HHHHHHH
T ss_pred             CEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHH-HhcCCCccccccccchhhcchhheec-----CchHHHHHH
Confidence            46889999999999999999999999954 566788888 888988          7777643322     266789999


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +.+..|+++++++||+|...++......|+.++++..|
T Consensus       116 i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~G  153 (169)
T PF12689_consen  116 IHRKTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDG  153 (169)
T ss_dssp             HHHHH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS
T ss_pred             HHHhcCCChhHEEEecCchhcceeeEecCcEEEEeCCC
Confidence            99999999999999999999999999999999999874

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.41  E-value=8.6e-13  Score=114.07  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=79.3

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCCh------------HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHR------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~------------~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ++|++.+.|++|++.|++++|+||...            ..+...+ +.+|+.  |+.+++.+.....||++..+..+++
T Consensus       198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL-~~lgip--fdviia~~~~~~RKP~pGm~~~a~~  274 (526)
T TIGR01663       198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIV-AKLGVP--FQVFIAIGAGFYRKPLTGMWDHLKE  274 (526)
T ss_pred             cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHH-HHcCCc--eEEEEeCCCCCCCCCCHHHHHHHHH
Confidence            579999999999999999999999766            3456666 777874  8888888888889999999999999


Q ss_pred             HcC----CCCCcEEEEecCHhhHHHHHHcCC
Q 024956          160 RLN----MEPSSSLVIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       160 ~l~----~~~~~~~~vGD~~~Dv~~a~~~G~  186 (260)
                      +++    +++++++||||+..|+.+++.+|-
T Consensus       275 ~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~  305 (526)
T TIGR01663       275 EANDGTEIQEDDCFFVGDAAGRPANGKAAGK  305 (526)
T ss_pred             hcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence            985    899999999999988887776664

Note that the EC number for the kinase function is: 2.7.1.78

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=99.40  E-value=3.4e-13  Score=95.49  Aligned_cols=98  Identities=20%  Similarity=0.286  Sum_probs=79.1

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      -++.|.+.|++++|+|+.....++.+. +.+|+..++..+         +.+...++.+++++++.++++.|+||..+|+
T Consensus        43 Gik~l~~~Gi~vAIITGr~s~ive~Ra-~~LGI~~~~qG~---------~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dl  112 (170)
T COG1778          43 GIKLLLKSGIKVAIITGRDSPIVEKRA-KDLGIKHLYQGI---------SDKLAAFEELLKKLNLDPEEVAYVGDDLVDL  112 (170)
T ss_pred             HHHHHHHcCCeEEEEeCCCCHHHHHHH-HHcCCceeeech---------HhHHHHHHHHHHHhCCCHHHhhhhcCccccH
Confidence            567788889999999999999999999 888886544333         2355899999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVIN  209 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~  209 (260)
                      ...+.+|+++...+.   .+.....++++..
T Consensus       113 pvm~~vGls~a~~dA---h~~v~~~a~~Vt~  140 (170)
T COG1778         113 PVMEKVGLSVAVADA---HPLLKQRADYVTS  140 (170)
T ss_pred             HHHHHcCCccccccc---CHHHHHhhHhhhh
Confidence            999999998766554   4444555555543

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=99.39  E-value=2.6e-13  Score=109.42  Aligned_cols=68  Identities=19%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ..+.+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|.   .+..+..++++..+..+
T Consensus       183 i~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na---~~~~k~~A~~vt~~n~~  250 (264)
T COG0561         183 ITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNA---DEELKELADYVTTSNDE  250 (264)
T ss_pred             EecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCC---CHHHHhhCCcccCCccc
Confidence            345777888999999999999999999999999999999999998888777   56666777765555443

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=99.39  E-value=2.2e-13  Score=110.34  Aligned_cols=69  Identities=9%  Similarity=0.068  Sum_probs=56.8

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch--hcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~v~~~~~  213 (260)
                      +..+.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|.   .++.+..+++  ++.+..+
T Consensus       181 eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na---~~~vK~~A~~~~v~~~n~e  251 (272)
T PRK15126        181 EVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNA---MPQLRAELPHLPVIGHCRN  251 (272)
T ss_pred             EeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCC---hHHHHHhCCCCeecCCCcc
Confidence            3455667788999999999999999999999999999999999998887766   6666777765  5555443

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.36  E-value=1.9e-11  Score=98.98  Aligned_cols=49  Identities=14%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             cCCCCCChHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .+.. .+...++++++.+++++ +++++|||+.||+.|++.+|+.+++-|.
T Consensus       186 ~~~~-~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA  235 (273)
T PRK00192        186 LGGG-DKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGP  235 (273)
T ss_pred             eCCC-CHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCC
Confidence            3445 67789999999999999 9999999999999999999999998887

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=99.33  E-value=9.4e-13  Score=106.55  Aligned_cols=69  Identities=17%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +-.+.+..|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|.   .+..+..|++++.+..+
T Consensus       189 eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~vt~~n~~  257 (270)
T PRK10513        189 EILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNA---IPSVKEVAQFVTKSNLE  257 (270)
T ss_pred             EEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCc---cHHHHHhcCeeccCCCc
Confidence            3456677888999999999999999999999999999999999998888776   67778888888876544

>PRK10976 putative hydrolase; Provisional

Probab=99.32  E-value=1.4e-11  Score=99.53  Aligned_cols=69  Identities=17%  Similarity=0.141  Sum_probs=57.1

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccc--hhcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD--EVINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~--~~v~~~~~  213 (260)
                      +..+.+-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-|.   .+..+..++  +++.+..|
T Consensus       183 eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA---~~~vK~~A~~~~v~~~n~e  253 (266)
T PRK10976        183 EVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNA---HQRLKDLLPELEVIGSNAD  253 (266)
T ss_pred             EEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCC---cHHHHHhCCCCeecccCch
Confidence            3445667788999999999999999999999999999999999998888877   666677765  56665444

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=99.30  E-value=1.6e-11  Score=94.21  Aligned_cols=85  Identities=22%  Similarity=0.388  Sum_probs=61.9

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc--C--------CCC---CChHHHHHH---
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV--R--------TGK---PSPDIFLEA---  157 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~--~--------~~k---p~~~~~~~~---  157 (260)
                      |++.++++.+++.|++++|+|++....++..+ +.+|+....  +++.+..  +        .+.   -|...++.+   
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~-~~~~i~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~  168 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIA-ERLGIDDDN--VIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIR  168 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHH-HHTTSSEGG--EEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHH-HHcCCCceE--EEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHH
Confidence            56669999999999999999999999998888 788876521  2221110  0        000   145566666   


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHH
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGK  182 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~  182 (260)
                      ... +.+...+++||||.+|+.|++
T Consensus       169 ~~~-~~~~~~~~~iGDs~~D~~~lr  192 (192)
T PF12710_consen  169 DEE-DIDPDRVIAIGDSINDLPMLR  192 (192)
T ss_dssp             HHH-THTCCEEEEEESSGGGHHHHH
T ss_pred             hhc-CCCCCeEEEEECCHHHHHHhC
Confidence            344 788999999999999999986

>PLN02887 hydrolase family protein

Probab=99.29  E-value=3.5e-12  Score=111.84  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=59.6

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +.+..+-.|..+++.+++.+|++++++++|||+.||++|.+.+|+.+++-|.   .+..+..|++++.+..+
T Consensus       500 EI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA---~eeVK~~Ad~VT~sNdE  568 (580)
T PLN02887        500 EIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNG---AEKTKAVADVIGVSNDE  568 (580)
T ss_pred             EEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCC---CHHHHHhCCEEeCCCCc
Confidence            3455677788999999999999999999999999999999999998888876   67778888988876554

>PTZ00445 p36-lilke protein; Provisional

Probab=99.27  E-value=7.5e-11  Score=88.76  Aligned_cols=135  Identities=13%  Similarity=0.199  Sum_probs=96.2

Q ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHHhhhccC---------CCCccHHHHHHHHHHCCCcEEEEeCCChHh--------
Q 024956           58 EAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKV---------KALPGANRLIKHLSCHGVPMALASNSHRAT--------  120 (260)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~--------  120 (260)
                      .+-..+++.|+..-.-++...+.......+...         ...|++..++.+|++.|++++|+|-++...        
T Consensus        33 ~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~  112 (219)
T PTZ00445         33 KFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPR  112 (219)
T ss_pred             HHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcc
Confidence            344455666665333333344433222222222         367899999999999999999999877644        


Q ss_pred             -------HHHHHHhhcCCccccceEEecc-----------ccCCCCCChHH--H--HHHHHHcCCCCCcEEEEecCHhhH
Q 024956          121 -------IESKISYQHGWNESFSVIVGSD-----------EVRTGKPSPDI--F--LEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus       121 -------~~~~l~~~~gl~~~f~~i~~~~-----------~~~~~kp~~~~--~--~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                             ++..+ +..+.....+.+++..           .++..||+|+.  |  ++++++.|+.|++++||+|+..++
T Consensus       113 ~Isg~~li~~~l-k~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NV  191 (219)
T PTZ00445        113 YISGDRMVEAAL-KKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNC  191 (219)
T ss_pred             eechHHHHHHHH-HhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHH
Confidence                   45555 5444444444444321           24788999999  8  999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcC
Q 024956          179 VAGKAAGMEVVAVPS  193 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~  193 (260)
                      .+|+.+|+.++.+..
T Consensus       192 eaA~~lGi~ai~f~~  206 (219)
T PTZ00445        192 KNALKEGYIALHVTG  206 (219)
T ss_pred             HHHHHCCCEEEEcCC
Confidence            999999999999975

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=99.24  E-value=1.4e-11  Score=91.37  Aligned_cols=76  Identities=24%  Similarity=0.292  Sum_probs=64.1

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc--cc--ccccchhccccccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT--HR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~--~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      ...+||++.+|+.+++.+|++|++++||||.. .|+-.|..+||..+.+..|...+  +.  ...|+..++++.+...+|
T Consensus       177 ~vvGKP~~~fFe~al~~~gv~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I  256 (262)
T KOG3040|consen  177 TVVGKPSPFFFESALQALGVDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI  256 (262)
T ss_pred             EEecCCCHHHHHHHHHhcCCChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence            34799999999999999999999999999999 59999999999999999864443  22  456788888888876665


Q ss_pred             c
Q 024956          219 W  219 (260)
Q Consensus       219 ~  219 (260)
                      .
T Consensus       257 ~  257 (262)
T KOG3040|consen  257 I  257 (262)
T ss_pred             H
Confidence            4

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=99.24  E-value=2e-10  Score=91.41  Aligned_cols=85  Identities=13%  Similarity=0.190  Sum_probs=65.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccc-cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~-f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ...++||+.++|+.|+++|++++++|++....   ....+ +.+|+..+ ++.++..++   .++++.....+.+..++ 
T Consensus       116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~L-kk~Gi~~~~~d~lllr~~---~~~K~~rr~~I~~~y~I-  190 (266)
T TIGR01533       116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNL-KRFGFPQADEEHLLLKKD---KSSKESRRQKVQKDYEI-  190 (266)
T ss_pred             CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHH-HHcCcCCCCcceEEeCCC---CCCcHHHHHHHHhcCCE-
Confidence            56789999999999999999999999987543   34566 77888754 356665542   24566777777776666 


Q ss_pred             CCcEEEEecCHhhHHHH
Q 024956          165 PSSSLVIEDSVIGVVAG  181 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a  181 (260)
                         +++|||+.+|+..+
T Consensus       191 ---vl~vGD~~~Df~~~  204 (266)
T TIGR01533       191 ---VLLFGDNLLDFDDF  204 (266)
T ss_pred             ---EEEECCCHHHhhhh
Confidence               89999999999654

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.22  E-value=5e-11  Score=94.79  Aligned_cols=90  Identities=20%  Similarity=0.311  Sum_probs=74.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH--HHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIE--SKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~--~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .++||+.++|++|+++|++++++||+.+....  ..+ +.+|+.. +|+.++++.....     ..+..++++++.++++
T Consensus        24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L-~~~gl~~~~~~~Ii~s~~~~~-----~~l~~~~~~~~~~~~~   97 (242)
T TIGR01459        24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTL-KSLGINADLPEMIISSGEIAV-----QMILESKKRFDIRNGI   97 (242)
T ss_pred             ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHH-HHCCCCccccceEEccHHHHH-----HHHHhhhhhccCCCce
Confidence            35789999999999999999999998877655  677 8899987 8999998865432     4667777888889999


Q ss_pred             EEEEecCHhhHHHHHHcCC
Q 024956          168 SLVIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~  186 (260)
                      +++|||+..|+......+.
T Consensus        98 ~~~vGd~~~d~~~~~~~~~  116 (242)
T TIGR01459        98 IYLLGHLENDIINLMQCYT  116 (242)
T ss_pred             EEEeCCcccchhhhcCCCc
Confidence            9999999999888766654

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.21  E-value=1.8e-11  Score=97.33  Aligned_cols=98  Identities=23%  Similarity=0.388  Sum_probs=80.3

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE--EeccccCCCCCChHHHHHHHHHcCCC-CCcEE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI--VGSDEVRTGKPSPDIFLEAAKRLNME-PSSSL  169 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i--~~~~~~~~~kp~~~~~~~~l~~l~~~-~~~~~  169 (260)
                      ++++.++++.+.++|+++ ++||.+.......+ ...+...++..+  .+.+....+||++..++.++++++.. +++++
T Consensus       140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~-~~~~~g~~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~~~~~~~~~  217 (242)
T TIGR01459       140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGI-YRYGAGYYAELIKQLGGKVIYSGKPYPAIFHKALKECSNIPKNRML  217 (242)
T ss_pred             HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCc-eEecccHHHHHHHHhCCcEecCCCCCHHHHHHHHHHcCCCCcccEE
Confidence            578899999998889987 78998887765444 556665556544  45555568999999999999999875 57999


Q ss_pred             EEecCH-hhHHHHHHcCCeEEEEc
Q 024956          170 VIEDSV-IGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       170 ~vGD~~-~Dv~~a~~~G~~~i~~~  192 (260)
                      ||||++ +|+.+|+++|+.++++.
T Consensus       218 ~vGD~~~~Di~~a~~~G~~~i~v~  241 (242)
T TIGR01459       218 MVGDSFYTDILGANRLGIDTALVL  241 (242)
T ss_pred             EECCCcHHHHHHHHHCCCeEEEEe
Confidence            999995 99999999999999885

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.20  E-value=5.3e-11  Score=96.32  Aligned_cols=52  Identities=8%  Similarity=-0.089  Sum_probs=46.5

Q ss_pred             cccCCCCCChHHHHHHHHHcCC---CCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNM---EPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~---~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +....+-.|..+++.+++.+|+   ++++++.|||+.||++|.+.+|..+++-+.
T Consensus       180 Ei~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~  234 (271)
T PRK03669        180 HVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGL  234 (271)
T ss_pred             EEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCC
Confidence            4456677888999999999999   999999999999999999999998887765

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=99.19  E-value=2.2e-11  Score=97.81  Aligned_cols=68  Identities=18%  Similarity=0.131  Sum_probs=55.9

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      -.+.+..|..+++.+++.++++++++++|||+.||+.|++.+|+.+++.+.   .+..+..+++++.+..+
T Consensus       182 I~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na---~~~~k~~a~~~~~~n~~  249 (256)
T TIGR00099       182 ITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNA---DEELKALADYVTDSNNE  249 (256)
T ss_pred             ecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCc---hHHHHHhCCEEecCCCC
Confidence            345667788999999999999999999999999999999999998777544   45556777777776544

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=99.17  E-value=4.6e-10  Score=82.70  Aligned_cols=89  Identities=25%  Similarity=0.259  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHCCC--cEEEEeCCC-------hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC--
Q 024956           95 GANRLIKHLSCHGV--PMALASNSH-------RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM--  163 (260)
Q Consensus        95 ~~~~~l~~l~~~g~--~i~i~s~~~-------~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~--  163 (260)
                      .+.+.++++++.+.  ++.|+||+.       ...++ .+++.+|+.    .+..    ...||  ..++++++.++.  
T Consensus        63 ~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~-~~~~~lgIp----vl~h----~~kKP--~~~~~i~~~~~~~~  131 (168)
T PF09419_consen   63 EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAE-ALEKALGIP----VLRH----RAKKP--GCFREILKYFKCQK  131 (168)
T ss_pred             HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHH-HHHHhhCCc----EEEe----CCCCC--ccHHHHHHHHhhcc
Confidence            34456666667654  499999984       33343 333666642    2211    13566  566666666654  


Q ss_pred             ---CCCcEEEEecCH-hhHHHHHHcCCeEEEEcCC
Q 024956          164 ---EPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       164 ---~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~  194 (260)
                         .|+++++|||.+ .|+.+++.+|+.++++..|
T Consensus       132 ~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~g  166 (168)
T PF09419_consen  132 VVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTDG  166 (168)
T ss_pred             CCCCchhEEEEcchHHHHHHHhhccCceEEEEecC
Confidence               599999999999 8999999999999999764

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=99.15  E-value=3.5e-10  Score=83.57  Aligned_cols=95  Identities=19%  Similarity=0.271  Sum_probs=66.7

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCCh--------------HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHR--------------ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~--------------~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~  157 (260)
                      ..|++.+.|++|.+.|+.++|+||...              ..+...+ +.+++.  +...++.....+.||++..+..+
T Consensus        30 ~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il-~~l~ip--~~~~~a~~~d~~RKP~~GM~~~~  106 (159)
T PF08645_consen   30 FPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENIL-KELGIP--IQVYAAPHKDPCRKPNPGMWEFA  106 (159)
T ss_dssp             C-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHH-HHCTS---EEEEECGCSSTTSTTSSHHHHHH
T ss_pred             cchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHH-HHcCCc--eEEEecCCCCCCCCCchhHHHHH
Confidence            345799999999999999999998721              1122233 445554  33444445557899999999999


Q ss_pred             HHHcCC----CCCcEEEEecC-----------HhhHHHHHHcCCeEE
Q 024956          158 AKRLNM----EPSSSLVIEDS-----------VIGVVAGKAAGMEVV  189 (260)
Q Consensus       158 l~~l~~----~~~~~~~vGD~-----------~~Dv~~a~~~G~~~i  189 (260)
                      ++.++.    +.++++||||.           -.|...|.++|+++.
T Consensus       107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~~D~~fA~N~gi~f~  153 (159)
T PF08645_consen  107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSDSDRKFALNCGIKFY  153 (159)
T ss_dssp             CCCTSTT--S-CCC-EEEESSCHCTB-S--S--HHHHHHHHHT--EE
T ss_pred             HHhccccccccccceEEEeccCCCCCcccccChhHHHHHHHcCCccc
Confidence            999874    88999999996           578999999999754

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=99.15  E-value=7.6e-10  Score=86.87  Aligned_cols=45  Identities=13%  Similarity=-0.018  Sum_probs=39.9

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      +..-.|+.+++.+++.+|++++++++|||+.||++|++.+|..++
T Consensus       175 ~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va  219 (221)
T TIGR02463       175 GASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVV  219 (221)
T ss_pred             cCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEE
Confidence            344456789999999999999999999999999999999998765

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=99.14  E-value=2.3e-10  Score=90.69  Aligned_cols=61  Identities=13%  Similarity=-0.051  Sum_probs=50.7

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAAD  205 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~  205 (260)
                      +..+...+|+.+++.++++++++++++++|||+.||+.|++.+|...++-+.   .++.+..++
T Consensus       152 ei~~~~~~K~~al~~l~~~~g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na---~~~~k~~a~  212 (236)
T TIGR02471       152 DVLPLRASKGLALRYLSYRWGLPLEQILVAGDSGNDEEMLRGLTLGVVVGNH---DPELEGLRH  212 (236)
T ss_pred             EEeeCCCChHHHHHHHHHHhCCCHHHEEEEcCCccHHHHHcCCCcEEEEcCC---cHHHHHhhc
Confidence            4556788899999999999999999999999999999999999987766554   444555555

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=99.13  E-value=3.7e-10  Score=88.99  Aligned_cols=76  Identities=26%  Similarity=0.354  Sum_probs=63.4

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccc--------cccccchhcccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH--------RYTAADEVINSLLD  213 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~--------~~~~~~~~v~~~~~  213 (260)
                      ..-.+||++..+..++++.+++|++++||||++ .||..+++.|++++++.+|....+        ....|++.++++.+
T Consensus       219 P~v~GKP~~~m~~~l~~~~~i~psRt~mvGDRL~TDIlFG~~~G~~TLLvltGv~~led~~~~~~~~~~~PDyy~~~l~d  298 (306)
T KOG2882|consen  219 PIVLGKPSTFMFEYLLEKFNIDPSRTCMVGDRLDTDILFGKNCGFKTLLVLSGVTTLEDILEAQGDNKMVPDYYADSLGD  298 (306)
T ss_pred             CeecCCCCHHHHHHHHHHcCCCcceEEEEcccchhhhhHhhccCcceEEEecCcCcHHHHHhcccccCCCCchHHhhHHH
Confidence            344799999999999999999999999999999 699999999999999998754322        23447888888887


Q ss_pred             ccccc
Q 024956          214 LRPEK  218 (260)
Q Consensus       214 l~~~~  218 (260)
                      +....
T Consensus       299 ~~~~~  303 (306)
T KOG2882|consen  299 LLPLL  303 (306)
T ss_pred             Hhhhc
Confidence            76654

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=99.13  E-value=7.6e-10  Score=83.06  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=107.0

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc-CCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV-GKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (260)
                      +..+++||+|.||+|.+...  +   +...++........+..+ ...+.+.+.+++++++-. -..++        ...
T Consensus        12 ~ril~~FDFD~TIid~dSD~--w---Vv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~--------ik~   78 (256)
T KOG3120|consen   12 PRILLVFDFDRTIIDQDSDN--W---VVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAE--------IKQ   78 (256)
T ss_pred             CcEEEEEecCceeecCCcch--H---HHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHH--------HHH
Confidence            34578899999999864322  1   112223222222222222 122455566666665422 12222        223


Q ss_pred             hhccCCCCccHHHHHHHHHHCCC-cEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----C-------------CC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----R-------------TG  147 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----~-------------~~  147 (260)
                      .+..++..||+.++++.+++.|. .+.|+|+.+..+++..+ +.+++.++|+.|++....    |             ..
T Consensus        79 ~~r~iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~L-ea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~  157 (256)
T KOG3120|consen   79 VLRSIPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEIL-EAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNL  157 (256)
T ss_pred             HHhcCCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHH-HHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCc
Confidence            34568899999999999999985 99999999999999999 999999989877663210    0             01


Q ss_pred             CC----ChHHHHHHH---HHcCCCCCcEEEEecCHhhHHHHHHcC-CeEEEEcCC
Q 024956          148 KP----SPDIFLEAA---KRLNMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPSL  194 (260)
Q Consensus       148 kp----~~~~~~~~l---~~l~~~~~~~~~vGD~~~Dv~~a~~~G-~~~i~~~~~  194 (260)
                      .|    |...+.++.   .+-|+..++.+||||+-||+....... ..+++...+
T Consensus       158 CPsNmCKg~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~CP~l~Lr~~D~ampRkg  212 (256)
T KOG3120|consen  158 CPSNMCKGLVLDELVASQLKDGVRYERLIYVGDGANDFCPVLRLRACDVAMPRKG  212 (256)
T ss_pred             CchhhhhhHHHHHHHHHHhhcCCceeeEEEEcCCCCCcCcchhcccCceecccCC
Confidence            11    112233322   224678889999999999987755544 445554443

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=99.12  E-value=1.9e-10  Score=88.12  Aligned_cols=173  Identities=16%  Similarity=0.260  Sum_probs=95.8

Q ss_pred             cE-EEEecCCccccCHHHHHHHHHHHHHHcCCC--CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH--
Q 024956           10 SC-VILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS--   84 (260)
Q Consensus        10 k~-vifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   84 (260)
                      |+ |.+||||||.|....+...+.   +.++..  ++.+....+   .       ..+.++..  ..+..+.+...+.  
T Consensus         2 ~i~I~iDiDgVLad~~~~~~~~~n---~~~~~~~~~~~~~~~~~---~-------~~~~~g~~--~~e~~~~~~~~~~~~   66 (191)
T PF06941_consen    2 KIRIAIDIDGVLADFNSAFIEWFN---EEFGKNPELTPEDITGY---W-------DWEKWGIT--EPEFYEKLWRFYEEP   66 (191)
T ss_dssp             -EEEEEESBTTTB-HHHHHHHHHH---HHTTTS----GGGGTSS---S-------HHHHHHHH--STTHHHHHHHHHTST
T ss_pred             CcEEEEECCCCCcccHHHHHHHHH---HHcCCCCCCCHHHhhhh---h-------HHHHhCCC--CHHHHHHHHHHHhCh
Confidence            45 899999999998665554444   344544  444433211   1       11111110  0122333333332  


Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChH-------hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-------TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~-------~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~  157 (260)
                      ..+...++.||+.++|++|.+.|..++++|.....       ...+-+.+.++...+-+.+++.+     |.        
T Consensus        67 ~~f~~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~~-----K~--------  133 (191)
T PF06941_consen   67 GFFSNLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTGD-----KT--------  133 (191)
T ss_dssp             TTTTT--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEESS-----GG--------
T ss_pred             hhhcCCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEecC-----CC--------
Confidence            23567899999999999999999888888776543       22334434444333324444422     11        


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                        .++.+    ++|+|++..+..+...|++++++..++++...   ....+.+++|+.+.+.
T Consensus       134 --~v~~D----vlIDD~~~n~~~~~~~g~~~iLfd~p~Nr~~~---~~~Rv~~W~ei~~~i~  186 (191)
T PF06941_consen  134 --LVGGD----VLIDDRPHNLEQFANAGIPVILFDQPYNRDES---NFPRVNNWEEIEDLIL  186 (191)
T ss_dssp             --GC--S----EEEESSSHHHSS-SSESSEEEEE--GGGTT-----TSEEE-STTSHHHHHH
T ss_pred             --eEecc----EEecCChHHHHhccCCCceEEEEcCCCCCCCC---CCccCCCHHHHHHHHH
Confidence              12222    89999999999999999999999986665543   6678888888776653

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=99.07  E-value=2.1e-11  Score=97.36  Aligned_cols=66  Identities=20%  Similarity=0.130  Sum_probs=56.4

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ...-.|..+++.+++.+|++++++++|||+.||++|.+.+|..+++-+.   .+..+..+++++++..+
T Consensus       182 ~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na---~~~~k~~a~~i~~~~~~  247 (254)
T PF08282_consen  182 PKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNA---TPELKKAADYITPSNND  247 (254)
T ss_dssp             ETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS----HHHHHHSSEEESSGTC
T ss_pred             eCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCC---CHHHHHhCCEEecCCCC
Confidence            4566778999999999999999999999999999999999998777766   56667888888877665

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=7.2e-09  Score=75.62  Aligned_cols=188  Identities=15%  Similarity=0.123  Sum_probs=107.7

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc--CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV--GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC   88 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (260)
                      .|+.|+|||+.-.+.     ...+...++..-........+  ..+-++.+.+++...+..  .++..+.       ...
T Consensus         5 vi~sDFDGTITl~Ds-----~~~itdtf~~~e~k~l~~~vls~tiS~rd~~g~mf~~i~~s--~~Eile~-------llk   70 (220)
T COG4359           5 VIFSDFDGTITLNDS-----NDYITDTFGPGEWKALKDGVLSKTISFRDGFGRMFGSIHSS--LEEILEF-------LLK   70 (220)
T ss_pred             EEEecCCCceEecch-----hHHHHhccCchHHHHHHHHHhhCceeHHHHHHHHHHhcCCC--HHHHHHH-------HHh
Confidence            466799999985422     122223333221111111111  112344555565554433  2333222       234


Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce----------------EEeccc--cCCCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV----------------IVGSDE--VRTGKPS  150 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~----------------i~~~~~--~~~~kp~  150 (260)
                      .+.+.|+.+++++..++++++++++|++...++...++...|-+.....                +...++  .|.-|  
T Consensus        71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~dK--  148 (220)
T COG4359          71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGHDK--  148 (220)
T ss_pred             hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCCCc--
Confidence            5789999999999999999999999999999999888544433221111                111111  22223  


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC--CCccccccccchhccccccccccccCC
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL--PKQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                          ...+..+.-+++.++|.||+..|+++|+..-.-   +...  -+....+........++.|++..+.++
T Consensus       149 ----~~vI~~l~e~~e~~fy~GDsvsDlsaaklsDll---FAK~~L~nyc~eqn~~f~~fe~F~eIlk~iekv  214 (220)
T COG4359         149 ----SSVIHELSEPNESIFYCGDSVSDLSAAKLSDLL---FAKDDLLNYCREQNLNFLEFETFYEILKEIEKV  214 (220)
T ss_pred             ----chhHHHhhcCCceEEEecCCcccccHhhhhhhH---hhHHHHHHHHHHcCCCCcccccHHHHHHHHHHH
Confidence                345556666778899999999999999987642   2210  001122344556666666666555443

>TIGR01684 viral_ppase viral phosphatase

Probab=99.05  E-value=1e-09  Score=87.23  Aligned_cols=60  Identities=13%  Similarity=0.168  Sum_probs=54.4

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI  153 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~  153 (260)
                      .|++.++|++|+++|++++++|++.++.+...+ +.+|+..+|+.++++++....||+++.
T Consensus       148 dPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L-~~lGLd~YFdvIIs~Gdv~~~kp~~e~  207 (301)
T TIGR01684       148 DPRIYDSLTELKKRGCILVLWSYGDRDHVVESM-RKVKLDRYFDIIISGGHKAEEYSTMST  207 (301)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH-HHcCCCcccCEEEECCccccCCCCccc
Confidence            378899999999999999999999999999888 899999999999999988888887643

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.02  E-value=6.3e-10  Score=98.77  Aligned_cols=115  Identities=20%  Similarity=0.214  Sum_probs=84.9

Q ss_pred             cCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ..+++|++.+++++|+++| ++++++|+.....++..+ +.+|+..+|..+.       +.++    ..++++++..+++
T Consensus       382 ~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~v~~l~~~~~~  449 (556)
T TIGR01525       382 RDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVA-AELGIDEVHAELL-------PEDK----LAIVKELQEEGGV  449 (556)
T ss_pred             cccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHH-HHhCCCeeeccCC-------HHHH----HHHHHHHHHcCCE
Confidence            3578999999999999999 999999999999998888 8899977665431       1222    3455555546779


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--ccccccccc
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRPEK  218 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~~~  218 (260)
                      ++||||+.||+.+++.+|+.   +..+...+.....+++++.  ++..+...+
T Consensus       450 v~~vGDg~nD~~al~~A~vg---ia~g~~~~~~~~~Ad~vi~~~~~~~l~~~i  499 (556)
T TIGR01525       450 VAMVGDGINDAPALAAADVG---IAMGAGSDVAIEAADIVLLNDDLSSLPTAI  499 (556)
T ss_pred             EEEEECChhHHHHHhhCCEe---EEeCCCCHHHHHhCCEEEeCCCHHHHHHHH
Confidence            99999999999999999954   3333223333556777776  566555443

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=99.01  E-value=9.3e-09  Score=82.19  Aligned_cols=52  Identities=25%  Similarity=0.243  Sum_probs=44.3

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +..+...+|..+++.+++.++++++++++|||+.||+.|++.++..++.+..
T Consensus       160 di~~~~~~K~~al~~l~~~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~n  211 (249)
T TIGR01485       160 DILPQGSGKGQALQYLLQKLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSN  211 (249)
T ss_pred             EEEeCCCChHHHHHHHHHHcCCCccCEEEEECChhHHHHHHccCCcEEEECC
Confidence            4566788999999999999999999999999999999999996654555543

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.01  E-value=7.2e-10  Score=97.89  Aligned_cols=115  Identities=20%  Similarity=0.223  Sum_probs=87.7

Q ss_pred             cCCCCccHHHHHHHHHHCCC-cEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~-~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ..+++|++.+++++|+++|+ +++++|+......+..+ +.+|+..+|..+.       +.++    ..++++++...++
T Consensus       360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~-~~lgi~~~f~~~~-------p~~K----~~~i~~l~~~~~~  427 (536)
T TIGR01512       360 SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVA-RELGIDEVHAELL-------PEDK----LEIVKELREKYGP  427 (536)
T ss_pred             eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHH-HHcCChhhhhccC-------cHHH----HHHHHHHHhcCCE
Confidence            45788999999999999999 99999999999999888 8899987765332       1222    4455555556689


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCC-CCccccccccchhc--cccccccccc
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSL-PKQTHRYTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~-~~~~~~~~~~~~~v--~~~~~l~~~~  218 (260)
                      ++||||+.||+.+++.+|+.   +..+ .........++.++  +++.++...+
T Consensus       428 v~~vGDg~nD~~al~~A~vg---ia~g~~~~~~~~~~ad~vl~~~~l~~l~~~i  478 (536)
T TIGR01512       428 VAMVGDGINDAPALAAADVG---IAMGASGSDVAIETADVVLLNDDLSRLPQAI  478 (536)
T ss_pred             EEEEeCCHHHHHHHHhCCEE---EEeCCCccHHHHHhCCEEEECCCHHHHHHHH
Confidence            99999999999999999963   3333 22333356778888  7888876653

.

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=99.01  E-value=4.3e-10  Score=90.29  Aligned_cols=68  Identities=9%  Similarity=-0.060  Sum_probs=52.5

Q ss_pred             ccCCCCCChHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccc---cchhccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA---ADEVINS  210 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~--~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~---~~~~v~~  210 (260)
                      ..+....|...++++++.++++  .+++++|||+.||+.|++.+|..+++-|.....+..+..   ++++..+
T Consensus       170 i~~~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~~~~~lk~~~~a~~~vt~~  242 (256)
T TIGR01486       170 VLGAGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNGPNVSLKPGDPGSFLLTPA  242 (256)
T ss_pred             EecCCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCCCccccCccCCCcEEEcCC
Confidence            3455667889999999999999  999999999999999999999988888763211334443   2355544

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=98.96  E-value=3.7e-10  Score=83.91  Aligned_cols=100  Identities=8%  Similarity=0.055  Sum_probs=86.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .+...||+.++|++|.+. +.++|+|++...+++..+ +.++... +|+.+++.+.+...+++   +.+.++.+|.++++
T Consensus        40 ~v~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il-~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~l~~~~~~  114 (162)
T TIGR02251        40 YVFKRPHVDEFLERVSKW-YELVIFTASLEEYADPVL-DILDRGGKVISRRLYRESCVFTNGK---YVKDLSLVGKDLSK  114 (162)
T ss_pred             EEEECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHH-HHHCcCCCEEeEEEEccccEEeCCC---EEeEchhcCCChhh
Confidence            467889999999999988 999999999999999998 8888765 88999888877665654   66778889999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +++|||++.++.++...|+....+..
T Consensus       115 vIiVDD~~~~~~~~~~NgI~i~~f~~  140 (162)
T TIGR02251       115 VIIIDNSPYSYSLQPDNAIPIKSWFG  140 (162)
T ss_pred             EEEEeCChhhhccCccCEeecCCCCC
Confidence            99999999999999999987666654

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]

Probab=98.87  E-value=2.3e-07  Score=70.38  Aligned_cols=124  Identities=17%  Similarity=0.095  Sum_probs=90.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC---CccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG---WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g---l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      ....++++...++..+..|++++|+|.++...++... ...+   +..+++..+.. .. -.|.....|..+.+..+.++
T Consensus       121 k~~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllf-g~s~~gdl~~y~~gyfDt-~i-G~K~e~~sy~~I~~~Ig~s~  197 (254)
T KOG2630|consen  121 KAHVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLF-GYSDAGDLRKYISGYFDT-TI-GLKVESQSYKKIGHLIGKSP  197 (254)
T ss_pred             cccccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHH-cccCcchHHHHhhhhhhc-cc-cceehhHHHHHHHHHhCCCh
Confidence            4578999999999999999999999999988776544 2221   22222322222 11 24555688999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccc--cchhcccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINSLLDLR  215 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~--~~~~v~~~~~l~  215 (260)
                      .+++|.-|.+....+|+.+|+.+..+.++.+.......  ..-++.+++.|.
T Consensus       198 ~eiLfLTd~~~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~  249 (254)
T KOG2630|consen  198 REILFLTDVPREAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE  249 (254)
T ss_pred             hheEEeccChHHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence            99999999999999999999998888775444333222  356666666653

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=98.85  E-value=3.3e-09  Score=83.28  Aligned_cols=43  Identities=9%  Similarity=0.037  Sum_probs=36.7

Q ss_pred             CCCChHHHHHHHHHcCC--CCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956          147 GKPSPDIFLEAAKRLNM--EPSSSLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~--~~~~~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      .-.++.+++.+++.+++  +++++++|||+.||+.|++.+|+.++
T Consensus       179 ~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~  223 (225)
T TIGR02461       179 GSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFL  223 (225)
T ss_pred             CCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEe
Confidence            45566888999988876  66789999999999999999998754

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=98.85  E-value=5.7e-09  Score=92.64  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=81.5

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ..+++|++.+++++|++.|++++++|+......+..+ +.+|+.     ++. +.  .++++    ...++++..+++++
T Consensus       403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia-~~lgi~-----~~~-~~--~p~~K----~~~v~~l~~~~~~v  469 (562)
T TIGR01511       403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVA-KELGIN-----VRA-EV--LPDDK----AALIKELQEKGRVV  469 (562)
T ss_pred             cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCc-----EEc-cC--ChHHH----HHHHHHHHHcCCEE
Confidence            3568899999999999999999999999999998888 888884     221 11  12233    33444444467899


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccccc
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~  218 (260)
                      +||||+.||+.+++.+|+...   .+...+.....++.++  +++.++...+
T Consensus       470 ~~VGDg~nD~~al~~A~vgia---~g~g~~~a~~~Advvl~~~~l~~l~~~i  518 (562)
T TIGR01511       470 AMVGDGINDAPALAQADVGIA---IGAGTDVAIEAADVVLMRNDLNDVATAI  518 (562)
T ss_pred             EEEeCCCccHHHHhhCCEEEE---eCCcCHHHHhhCCEEEeCCCHHHHHHHH
Confidence            999999999999999997432   2222333355677777  3666665543

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PLN02382 probable sucrose-phosphatase

Probab=98.81  E-value=5.1e-08  Score=83.16  Aligned_cols=51  Identities=18%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             ccCCCCCChHHHHHHHHHc---CCCCCcEEEEecCHhhHHHHHHcC-CeEEEEcC
Q 024956          143 EVRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDSVIGVVAGKAAG-MEVVAVPS  193 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l---~~~~~~~~~vGD~~~Dv~~a~~~G-~~~i~~~~  193 (260)
                      ..+.+-.|..+++.+++++   |++++++++|||+.||++|.+.+| ..+++-|.
T Consensus       169 I~p~g~sKg~Al~~L~~~~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA  223 (413)
T PLN02382        169 VLPQGAGKGQALAYLLKKLKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNA  223 (413)
T ss_pred             EEeCCCCHHHHHHHHHHHhhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCC
Confidence            3455667789999999999   999999999999999999999999 56666554

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=98.81  E-value=2.9e-08  Score=79.93  Aligned_cols=71  Identities=11%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc----CCeEEEEcCCCCccccccccchhccccccccccccC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~----G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +.+..|..+++++++.+++..+++++|||+.||+.|.+.+    |+. +.+..  .    ...|.+.+++..++..++..
T Consensus       170 p~g~~Kg~al~~ll~~~~~~~~~v~~~GD~~nD~~mf~~~~~~~g~~-vavg~--a----~~~A~~~l~~~~~v~~~L~~  242 (266)
T PRK10187        170 PRGTNKGEAIAAFMQEAPFAGRTPVFVGDDLTDEAGFAVVNRLGGIS-VKVGT--G----ATQASWRLAGVPDVWSWLEM  242 (266)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCeEEEEcCCccHHHHHHHHHhcCCeE-EEECC--C----CCcCeEeCCCHHHHHHHHHH
Confidence            4455678999999999999999999999999999999998    554 44432  1    13477788888888777765


Q ss_pred             CC
Q 024956          221 LP  222 (260)
Q Consensus       221 l~  222 (260)
                      |.
T Consensus       243 l~  244 (266)
T PRK10187        243 IT  244 (266)
T ss_pred             HH
Confidence            54

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.77  E-value=7e-08  Score=76.96  Aligned_cols=82  Identities=16%  Similarity=0.212  Sum_probs=62.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC-------------------------
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG-------------------------  147 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~-------------------------  147 (260)
                      .|++.++|++|+++|++++++|++..+.+...+ +.+|+..+|+.+++++.....                         
T Consensus       150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~L-e~lgL~~yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~  228 (303)
T PHA03398        150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSL-KETKLEGYFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT  228 (303)
T ss_pred             ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HHcCCCccccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence            378889999999999999999999999999888 999999999988877543211                         


Q ss_pred             ----CC-ChHHHHHHHHHcCCCC-CcEEEEecCH
Q 024956          148 ----KP-SPDIFLEAAKRLNMEP-SSSLVIEDSV  175 (260)
Q Consensus       148 ----kp-~~~~~~~~l~~l~~~~-~~~~~vGD~~  175 (260)
                          -| +|......|++.|+.. +.+-.|+|-.
T Consensus       229 ~~~~lPKSprvVl~yL~~~gvn~~KtiTLVDDl~  262 (303)
T PHA03398        229 DVKNLPKSPRVVLWYLRKKGVNYFKTITLVDDLK  262 (303)
T ss_pred             cccCCCCCCeehHHHHHHcCcceeccEEEeccCc
Confidence                11 2456677777777654 4455566655

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.76  E-value=2.3e-08  Score=77.41  Aligned_cols=47  Identities=21%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEE
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      -.+.+.+|+.+++.++++++++++++++|||+.||+.|++.+|+..+
T Consensus       157 v~p~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~va  203 (204)
T TIGR01484       157 VLPAGVDKGSALQALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVA  203 (204)
T ss_pred             EecCCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceE
Confidence            34567888999999999999999999999999999999999998765

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=98.76  E-value=8.4e-07  Score=75.85  Aligned_cols=104  Identities=18%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--------CCccccceEEeccc-----------------c
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V  144 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--------gl~~~f~~i~~~~~-----------------~  144 (260)
                      +...|.+..+|+.|++.|.++.++||+...++...+.-.+        .+.++||.|+....                 .
T Consensus       182 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~  261 (448)
T PF05761_consen  182 IHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTET  261 (448)
T ss_dssp             EE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTT
T ss_pred             ccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCC
Confidence            3456899999999999999999999999998877763222        46789999887421                 1


Q ss_pred             CCC---------CC----ChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHc-CCeEEEEcC
Q 024956          145 RTG---------KP----SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAA-GMEVVAVPS  193 (260)
Q Consensus       145 ~~~---------kp----~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~-G~~~i~~~~  193 (260)
                      +..         ++    ...-...+++.++...++++||||+. .|+...+.. |+.++++-.
T Consensus       262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~  325 (448)
T PF05761_consen  262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP  325 (448)
T ss_dssp             SSEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred             CccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence            110         00    01235777888899999999999999 799887776 999999965

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.74  E-value=2.2e-08  Score=93.01  Aligned_cols=114  Identities=15%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      .+++|++.+.+++|++.|++++++|+......+..+ +.+|+..+|..+           .|+...+++++++..+++++
T Consensus       649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia-~~lgi~~~~~~~-----------~p~~K~~~i~~l~~~~~~v~  716 (834)
T PRK10671        649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIA-KEAGIDEVIAGV-----------LPDGKAEAIKRLQSQGRQVA  716 (834)
T ss_pred             CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCCEEEeCC-----------CHHHHHHHHHHHhhcCCEEE
Confidence            367899999999999999999999999999888787 888986544322           13445567777777888999


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCccccccc--cchhccccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINSLLDLRPEK  218 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~  218 (260)
                      ||||+.||+.+++.+|+...+-+   ..+.....  .....+++.++...+
T Consensus       717 ~vGDg~nD~~al~~Agvgia~g~---g~~~a~~~ad~vl~~~~~~~i~~~i  764 (834)
T PRK10671        717 MVGDGINDAPALAQADVGIAMGG---GSDVAIETAAITLMRHSLMGVADAL  764 (834)
T ss_pred             EEeCCHHHHHHHHhCCeeEEecC---CCHHHHHhCCEEEecCCHHHHHHHH
Confidence            99999999999999999544432   23333333  344556677666554

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=98.74  E-value=7.6e-08  Score=66.34  Aligned_cols=122  Identities=11%  Similarity=0.141  Sum_probs=96.3

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      .-++++.+.+.+++|++. +.+++.|+.....+.+.+ +..|+.  .+.++..       .+++....+++.|+-+.+.+
T Consensus        28 gGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~la-e~~gi~--~~rv~a~-------a~~e~K~~ii~eLkk~~~k~   96 (152)
T COG4087          28 GGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLA-EFVGIP--VERVFAG-------ADPEMKAKIIRELKKRYEKV   96 (152)
T ss_pred             CcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHH-HHcCCc--eeeeecc-------cCHHHHHHHHHHhcCCCcEE
Confidence            467899999999999999 999999998888887777 777754  2344322       34577788999998877899


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCC
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +||||+.||+.+.+++-+..+-+............++.+++++.|+++.....
T Consensus        97 vmVGnGaND~laLr~ADlGI~tiq~e~v~~r~l~~ADvvik~i~e~ldl~~~~  149 (152)
T COG4087          97 VMVGNGANDILALREADLGICTIQQEGVPERLLLTADVVLKEIAEILDLLKDT  149 (152)
T ss_pred             EEecCCcchHHHhhhcccceEEeccCCcchHHHhhchhhhhhHHHHHHHhhcc
Confidence            99999999999999999876666553334444678899999999888776543

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=98.72  E-value=2.8e-08  Score=92.73  Aligned_cols=124  Identities=19%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC----------------CCCCChHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR----------------TGKPSPDIF  154 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~----------------~~kp~~~~~  154 (260)
                      +++|++.+.+++|++.|++++++|+.......... +..|+...++.+++++...                .....|+..
T Consensus       528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia-~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~K  606 (884)
T TIGR01522       528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA-RRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEHK  606 (884)
T ss_pred             cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHHH
Confidence            67899999999999999999999999999988888 8899976666554443221                233566777


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchhc--cccccccccc
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~v--~~~~~l~~~~  218 (260)
                      ..+++.++-..+.++|+||+.||+.+++.+++...+   +....+. +..++.++  +++..+...+
T Consensus       607 ~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~---g~~g~~va~~aaDivl~dd~~~~i~~~i  670 (884)
T TIGR01522       607 MKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAM---GQTGTDVAKEAADMILTDDDFATILSAI  670 (884)
T ss_pred             HHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEec---CCCcCHHHHHhcCEEEcCCCHHHHHHHH
Confidence            777777776678899999999999999999975433   3222333 56778888  4577765543

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=98.65  E-value=1.5e-06  Score=77.11  Aligned_cols=47  Identities=6%  Similarity=-0.020  Sum_probs=41.8

Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEE--ecCHhhHHHHHHcCCeEEEEcC
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVI--EDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~v--GD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .-.|..+++.+++.++++.++++.|  ||+.||+.|.+.+|..+++-+.
T Consensus       611 gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~  659 (694)
T PRK14502        611 GNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRP  659 (694)
T ss_pred             CCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCC
Confidence            5677899999999999999999999  9999999999999998776544

>COG4996 Predicted phosphatase [General function prediction only]

Probab=98.61  E-value=1.8e-07  Score=64.47  Aligned_cols=90  Identities=16%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH------c
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR------L  161 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~------l  161 (260)
                      .++.++|.+.+++.+++..|+-+..+|=+........| +.+++..+|+.++.-.. + .  +...+.+++.+      .
T Consensus        38 ~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aL-ral~~~~yFhy~ViePh-P-~--K~~ML~~llr~i~~er~~  112 (164)
T COG4996          38 REVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKAL-RALDLLQYFHYIVIEPH-P-Y--KFLMLSQLLREINTERNQ  112 (164)
T ss_pred             eEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHH-HHhchhhhEEEEEecCC-C-h--hHHHHHHHHHHHHHhhcc
Confidence            35789999999999999999999999999888888888 99999999999875321 1 1  12344445543      3


Q ss_pred             CCCCCcEEEEecCHhhHHHHH
Q 024956          162 NMEPSSSLVIEDSVIGVVAGK  182 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~  182 (260)
                      .+.|++++|++|..-.+.-..
T Consensus       113 ~ikP~~Ivy~DDR~iH~~~Iw  133 (164)
T COG4996         113 KIKPSEIVYLDDRRIHFGNIW  133 (164)
T ss_pred             ccCcceEEEEecccccHHHHH
Confidence            478999999999986554433

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.60  E-value=1.5e-07  Score=69.29  Aligned_cols=82  Identities=18%  Similarity=0.135  Sum_probs=63.2

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-ccc-ceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .+.++||+.++|+++++. ++++|+|++....+...+ +.++.. .+| +.+++.+.+..  +.   .+.+-..++.+.+
T Consensus        56 ~v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl-~~ldp~~~~F~~ri~~rd~~~~--~~---~KdL~~i~~~d~~  128 (156)
T TIGR02250        56 LTKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIA-KLIDPDGKYFGDRIISRDESGS--PH---TKSLLRLFPADES  128 (156)
T ss_pred             EEEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHH-HHhCcCCCeeccEEEEeccCCC--Cc---cccHHHHcCCCcc
Confidence            577899999999999966 999999999999999988 888877 478 66777665431  11   1122244577889


Q ss_pred             cEEEEecCHhh
Q 024956          167 SSLVIEDSVIG  177 (260)
Q Consensus       167 ~~~~vGD~~~D  177 (260)
                      .+++|+|++.-
T Consensus       129 ~vvivDd~~~~  139 (156)
T TIGR02250       129 MVVIIDDREDV  139 (156)
T ss_pred             cEEEEeCCHHH
Confidence            99999999953

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>smart00775 LNS2 LNS2 domain

Probab=98.59  E-value=8.1e-07  Score=65.59  Aligned_cols=92  Identities=14%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhh-----cCCccccceEEecccc---------CCCCC---ChH
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQ-----HGWNESFSVIVGSDEV---------RTGKP---SPD  152 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~-----~gl~~~f~~i~~~~~~---------~~~kp---~~~  152 (260)
                      .|++.+++++++++|++++++|+++.....   ..+ ..     .++..  ..++.++..         ...+|   +.+
T Consensus        29 ~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l-~~~~~~~~~lp~--g~li~~~g~~~~~~~~e~i~~~~~~~K~~  105 (157)
T smart00775       29 HPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYL-SQIKQDGHNLPH--GPVLLSPDRLFAALHREVISKKPEVFKIA  105 (157)
T ss_pred             CHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHH-HHhhhccccCCC--ceEEEcCCcchhhhhcccccCCHHHHHHH
Confidence            588999999999999999999999887764   455 33     22321  234433321         12223   334


Q ss_pred             HHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCe
Q 024956          153 IFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       153 ~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      .++.+++.+.-.- .-++.+||+.+|+.+-+++|+.
T Consensus       106 ~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~~~gi~  141 (157)
T smart00775      106 CLRDIKSLFPPQGNPFYAGFGNRITDVISYSAVGIP  141 (157)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCchhHHHHHHcCCC
Confidence            4455554433111 2245689999999999999985

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=98.58  E-value=1.2e-07  Score=74.39  Aligned_cols=91  Identities=15%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCC---CCChHHHHHHHHHcCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTG---KPSPDIFLEAAKRLNM  163 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~---kp~~~~~~~~l~~l~~  163 (260)
                      ....|++.++++.++++|+.|+++|++....   ....| ...|+..+-..++-.+.....   ......-+..+++-|.
T Consensus       114 ~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL-~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~Gy  192 (229)
T PF03767_consen  114 APAIPGALELYNYARSRGVKVFFITGRPESQREATEKNL-KKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKKGY  192 (229)
T ss_dssp             GEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHH-HHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHTTE
T ss_pred             CcccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHH-HHcCCCccchhccccccccccccccccchHHHHHHHHcCC
Confidence            4788999999999999999999999987664   34456 666765432333333222111   1111333444444332


Q ss_pred             CCCcEEEEecCHhhHHHHHH
Q 024956          164 EPSSSLVIEDSVIGVVAGKA  183 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~  183 (260)
                      .  =+++|||+.+|+..++.
T Consensus       193 ~--Ii~~iGD~~~D~~~~~~  210 (229)
T PF03767_consen  193 R--IIANIGDQLSDFSGAKT  210 (229)
T ss_dssp             E--EEEEEESSGGGCHCTHH
T ss_pred             c--EEEEeCCCHHHhhcccc
Confidence            2  28899999999998443

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=98.56  E-value=4.1e-07  Score=72.46  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=38.3

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .+..-.|..+++.+++++++++++++++|||-||+.|. ..+...|.+..
T Consensus       160 lP~~a~K~~Al~~L~~~~~~~~~~vl~aGDSgND~~mL-~~~~~~vvV~N  208 (247)
T PF05116_consen  160 LPKGASKGAALRYLMERWGIPPEQVLVAGDSGNDLEML-EGGDHGVVVGN  208 (247)
T ss_dssp             EETT-SHHHHHHHHHHHHT--GGGEEEEESSGGGHHHH-CCSSEEEE-TT
T ss_pred             ccCCCCHHHHHHHHHHHhCCCHHHEEEEeCCCCcHHHH-cCcCCEEEEcC
Confidence            34556678999999999999999999999999999999 66667777755

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=98.56  E-value=4.4e-06  Score=72.65  Aligned_cols=95  Identities=13%  Similarity=-0.006  Sum_probs=56.9

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--------ceEEeccccCCC-CCChHHHHHHHHHcC
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--------SVIVGSDEVRTG-KPSPDIFLEAAKRLN  162 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--------~~i~~~~~~~~~-kp~~~~~~~~l~~l~  162 (260)
                      +.+.+.+   .++++|. .+++|++....++..+++.+|++..+        +..+++...+.. .-..+-...+.+.++
T Consensus       111 l~~~a~~---~~~~~g~-~vvVSASp~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~~~~g  186 (497)
T PLN02177        111 VHPETWR---VFNSFGK-RYIITASPRIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVLKEFG  186 (497)
T ss_pred             cCHHHHH---HHHhCCC-EEEEECCcHHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHHHHhC
Confidence            5555555   4455664 59999999999998884447765331        223332222110 011122233334556


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      .+... +++|||.+|..+...++...+.-
T Consensus       187 ~~~~~-~aYgDS~sD~plL~~a~e~y~V~  214 (497)
T PLN02177        187 DALPD-LGLGDRETDHDFMSICKEGYMVP  214 (497)
T ss_pred             CCCce-EEEECCccHHHHHHhCCccEEeC
Confidence            44444 89999999999999999765443

>TIGR01675 plant-AP plant acid phosphatase

Probab=98.55  E-value=2.9e-06  Score=65.97  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCCh----HHHHHHHHHc
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSP----DIFLEAAKRL  161 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~----~~~~~~l~~l  161 (260)
                      ..+..|++.++++.++++|++++++|+++...   ....| ...|+..+ +.++-.......++..    +...++. .-
T Consensus       118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL-~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~  194 (229)
T TIGR01675       118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNL-INAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLM-EE  194 (229)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH-HHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHH-hC
Confidence            56889999999999999999999999998766   55666 66787654 5555543222222211    2222222 22


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      |  ..=+..|||..+|+... .+|.++.-
T Consensus       195 G--YrIv~~iGDq~sDl~G~-~~~~RtFK  220 (229)
T TIGR01675       195 G--YRIWGNIGDQWSDLLGS-PPGRRTFK  220 (229)
T ss_pred             C--ceEEEEECCChHHhcCC-CccCceee
Confidence            2  22367899999999553 34434433

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PTZ00174 phosphomannomutase; Provisional

Probab=98.55  E-value=1.4e-08  Score=80.94  Aligned_cols=48  Identities=8%  Similarity=-0.131  Sum_probs=39.8

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +....+-.|..+++.+++.    ++++++|||    +.||++|.+.++...+.+..
T Consensus       181 eI~~~gvsKg~al~~L~~~----~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n  232 (247)
T PTZ00174        181 DVFPKGWDKTYCLRHLEND----FKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKN  232 (247)
T ss_pred             EeeeCCCcHHHHHHHHHhh----hhhEEEEcccCCCCCCcHhhhhcCCCceEEeCC
Confidence            4455677788999999998    589999999    89999999988877677753

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.52  E-value=1.1e-06  Score=70.20  Aligned_cols=45  Identities=16%  Similarity=0.011  Sum_probs=36.0

Q ss_pred             CCCChHHHHHHHHHcCCC--CCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          147 GKPSPDIFLEAAKRLNME--PSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~--~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ..+|..+++.+++.+.-.  +-.++.+|||+||+.|.+.+-+.++.-
T Consensus       206 ~~dKg~A~~~L~~~y~~~~~~~~tiaLGDspND~~mLe~~D~~vvi~  252 (302)
T PRK12702        206 SLPGEQAVQLLLDCYQRHLGPIKALGIGCSPPDLAFLRWSEQKVVLP  252 (302)
T ss_pred             CCCHHHHHHHHHHHHHhccCCceEEEecCChhhHHHHHhCCeeEEec
Confidence            446678888888776643  447999999999999999999987653

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=98.47  E-value=6.2e-07  Score=82.21  Aligned_cols=111  Identities=17%  Similarity=0.166  Sum_probs=77.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -+++|++.+.+++|++.|++++++|+.......... +.+|+..+++      ..      |+-...++++++ .+..++
T Consensus       567 d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia-~~lgi~~~~~------~~------p~~K~~~v~~l~-~~~~v~  632 (741)
T PRK11033        567 DTLRADARQAISELKALGIKGVMLTGDNPRAAAAIA-GELGIDFRAG------LL------PEDKVKAVTELN-QHAPLA  632 (741)
T ss_pred             cCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCeecC------CC------HHHHHHHHHHHh-cCCCEE
Confidence            478899999999999999999999999999888888 8899853221      11      223334555554 346899


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--ccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE  217 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~  217 (260)
                      ||||+.||..+++.+++...+-+.   .+.....++.++  +++.+|...
T Consensus       633 mvGDgiNDapAl~~A~vgia~g~~---~~~a~~~adivl~~~~l~~l~~~  679 (741)
T PRK11033        633 MVGDGINDAPAMKAASIGIAMGSG---TDVALETADAALTHNRLRGLAQM  679 (741)
T ss_pred             EEECCHHhHHHHHhCCeeEEecCC---CHHHHHhCCEEEecCCHHHHHHH
Confidence            999999999999999976554322   222233444333  455555543

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=98.40  E-value=1.8e-05  Score=63.04  Aligned_cols=104  Identities=14%  Similarity=0.221  Sum_probs=73.8

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCc--cc-c--ceEE---------------e-ccccCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWN--ES-F--SVIV---------------G-SDEVRT  146 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~--~~-f--~~i~---------------~-~~~~~~  146 (260)
                      -...+.+.++++.|+.+|+++..+|..........++  ..+|+.  .. |  +..+               . +=-...
T Consensus        80 ~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~  159 (252)
T PF11019_consen   80 ELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG  159 (252)
T ss_pred             EEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence            3456789999999999999999999998877655552  334432  11 0  0000               0 001123


Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH----HHHcCCeEEEEcC
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA----GKAAGMEVVAVPS  193 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~----a~~~G~~~i~~~~  193 (260)
                      +-++...+..++...+..|+.++||+|+..++..    ++..|+.++++..
T Consensus       160 ~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Y  210 (252)
T PF11019_consen  160 GQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHY  210 (252)
T ss_pred             CCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEE
Confidence            4567799999999999999999999999977655    4557888888876

The function is not known.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=98.37  E-value=1.2e-05  Score=63.67  Aligned_cols=91  Identities=12%  Similarity=0.126  Sum_probs=56.1

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHH----HHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFL----EAAKR  160 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~----~~l~~  160 (260)
                      ...+..|++.++++.+++.|++++++|++....   ....| ...|+..+ +.++-.......+.+.-.++    .-+.+
T Consensus       142 ~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL-~kaGy~~~-~~LiLR~~~D~~~~~av~yKs~~R~~li~  219 (275)
T TIGR01680       142 GEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANL-KKAGYHTW-EKLILKDPQDNSAENAVEYKTAARAKLIQ  219 (275)
T ss_pred             ccCCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHH-HHcCCCCc-ceeeecCCCCCccchhHHHHHHHHHHHHH
Confidence            357789999999999999999999999998654   34455 55677543 55554322111111111111    11222


Q ss_pred             cCCCCCcEEEEecCHhhHHHHH
Q 024956          161 LNMEPSSSLVIEDSVIGVVAGK  182 (260)
Q Consensus       161 l~~~~~~~~~vGD~~~Dv~~a~  182 (260)
                      -|.  .=+..|||..+|+....
T Consensus       220 eGY--rIv~~iGDq~sDl~G~~  239 (275)
T TIGR01680       220 EGY--NIVGIIGDQWNDLKGEH  239 (275)
T ss_pred             cCc--eEEEEECCCHHhccCCC
Confidence            222  23688999999985443

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=98.36  E-value=7.8e-07  Score=83.51  Aligned_cols=124  Identities=16%  Similarity=0.108  Sum_probs=87.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc----cceEEeccc----------------cCCCCCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----FSVIVGSDE----------------VRTGKPS  150 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~----f~~i~~~~~----------------~~~~kp~  150 (260)
                      +++|++.+.++.|++.|++++++|+.......... +..|+...    ....+++..                .-..+..
T Consensus       537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia-~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~  615 (917)
T TIGR01116       537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAIC-RRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVE  615 (917)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHH-HHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecC
Confidence            67899999999999999999999999888887777 77887531    011222111                1123334


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc--cccccccc
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPEK  218 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~--~~~l~~~~  218 (260)
                      |+-..++++.++-..+.++|+||+.||+.|.+.+++...+- .  ..+..+..+++++.+  +..+.+.+
T Consensus       616 P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g-~--g~~~ak~aAD~vl~dd~f~~i~~~i  682 (917)
T TIGR01116       616 PSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMG-S--GTEVAKEASDMVLADDNFATIVAAV  682 (917)
T ss_pred             HHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECC-C--CcHHHHHhcCeEEccCCHHHHHHHH
Confidence            56667777777766778999999999999999999854433 2  233346678888876  66665543

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=98.34  E-value=4.3e-06  Score=61.01  Aligned_cols=95  Identities=17%  Similarity=0.154  Sum_probs=68.7

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhH---HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATI---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~---~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      +.+-++++++-..++|-.++++|++....+   ...|++.+.+......++.++-   .||...-....++..++.    
T Consensus       115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~m~pv~f~Gdk---~k~~qy~Kt~~i~~~~~~----  187 (237)
T COG3700         115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITNMNPVIFAGDK---PKPGQYTKTQWIQDKNIR----  187 (237)
T ss_pred             hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCCCcceeeccCC---CCcccccccHHHHhcCce----
Confidence            445678899999999999999999876543   3455466777665555555532   233333445566776664    


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ++.|||-+|+.+|+.+|.+.|-+.+
T Consensus       188 IhYGDSD~Di~AAkeaG~RgIRilR  212 (237)
T COG3700         188 IHYGDSDNDITAAKEAGARGIRILR  212 (237)
T ss_pred             EEecCCchhhhHHHhcCccceeEEe
Confidence            9999999999999999998877765

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=98.34  E-value=4.2e-06  Score=64.20  Aligned_cols=89  Identities=15%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh----HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT----IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~----~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ...+.||+.++++..-++|..|+.+||+..+.    ....| .+.|+....+..+.--  ...+++..-.+.+-+    .
T Consensus       120 ~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nL-k~~g~~~~~~~~~llk--k~~k~Ke~R~~~v~k----~  192 (274)
T COG2503         120 KSKAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENL-KSEGLPQVLESHLLLK--KDKKSKEVRRQAVEK----D  192 (274)
T ss_pred             ccccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHH-HHcCcccccccceEEe--eCCCcHHHHHHHHhh----c
Confidence            56899999999999999999999999998775    34455 6677765543322111  224444444444444    3


Q ss_pred             CCcEEEEecCHhhHHHHHHc
Q 024956          165 PSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      .+-++.|||++.|.......
T Consensus       193 ~~iVm~vGDNl~DF~d~~~k  212 (274)
T COG2503         193 YKIVMLVGDNLDDFGDNAYK  212 (274)
T ss_pred             cceeeEecCchhhhcchhhh
Confidence            45589999999987654443

>COG5663 Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=9.7e-06  Score=58.57  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=64.1

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      ++.....++...|..+++. .+++.+|.......+..- ..+-. ...++.+...+..++        -.+.+..+++  
T Consensus        69 ke~l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~-~~l~~q~ih~~~l~i~g~h~K--------V~~vrth~id--  136 (194)
T COG5663          69 KEALLAQLVKQVLPSLKEE-HRLIYITARKADLTRITY-AWLFIQNIHYDHLEIVGLHHK--------VEAVRTHNID--  136 (194)
T ss_pred             HHHHHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHH-HHHHHhccchhhhhhhccccc--------chhhHhhccC--
Confidence            3455667888999999988 688889888776644332 21111 123344433222221        3456677776  


Q ss_pred             cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc
Q 024956          167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT  198 (260)
Q Consensus       167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~  198 (260)
                        +++.|+. |-++.|+.+|++++.+++.+++-
T Consensus       137 --lf~ed~~~na~~iAk~~~~~vilins~ynRk  167 (194)
T COG5663         137 --LFFEDSHDNAGQIAKNAGIPVILINSPYNRK  167 (194)
T ss_pred             --ccccccCchHHHHHHhcCCcEEEecCccccc
Confidence              8999999 78888999999999999955443

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.28  E-value=1.7e-06  Score=79.41  Aligned_cols=69  Identities=14%  Similarity=-0.022  Sum_probs=49.0

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +..-.|..+++.+++  +++++.+++|||+.||+.|.+.++.....+..+.    ....|.+.+++..|+...+.
T Consensus       653 p~~vnKG~al~~ll~--~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~----~~s~A~~~l~~~~eV~~~L~  721 (726)
T PRK14501        653 PAGVNKGRAVRRLLE--AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGP----GESRARYRLPSQREVRELLR  721 (726)
T ss_pred             ECCCCHHHHHHHHHh--cCCCCEEEEECCCCChHHHHHhcccCceEEEECC----CCCcceEeCCCHHHHHHHHH
Confidence            345567788888888  6788899999999999999999742222222222    13567788888887666554

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=98.27  E-value=2.6e-06  Score=76.54  Aligned_cols=89  Identities=13%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ++.|++.+.+++|++.|++++++|+.......... +..|+.+++    ..       -.|+-...+++.+.-....++|
T Consensus       446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA-~~lGI~~v~----a~-------~~PedK~~~v~~lq~~g~~Vam  513 (675)
T TIGR01497       446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIA-AEAGVDDFI----AE-------ATPEDKIALIRQEQAEGKLVAM  513 (675)
T ss_pred             cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCEEE----cC-------CCHHHHHHHHHHHHHcCCeEEE
Confidence            77899999999999999999999999999888777 888985432    21       1234444555554434457999


Q ss_pred             EecCHhhHHHHHHcCCeEEEE
Q 024956          171 IEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      +||+.||..+.+.+++...+-
T Consensus       514 vGDG~NDapAL~~AdvGiAm~  534 (675)
T TIGR01497       514 TGDGTNDAPALAQADVGVAMN  534 (675)
T ss_pred             ECCCcchHHHHHhCCEeEEeC
Confidence            999999999999999876654

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PLN02423 phosphomannomutase

Probab=98.24  E-value=1.7e-07  Score=74.52  Aligned_cols=47  Identities=11%  Similarity=-0.136  Sum_probs=38.8

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.+..+-.|..+++.++     +++++++|||    +.||++|.+..|+.++-|..
T Consensus       182 Di~~~gvnKg~al~~L~-----~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~  232 (245)
T PLN02423        182 DVFPQGWDKTYCLQFLE-----DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS  232 (245)
T ss_pred             EEeeCCCCHHHHHHHhc-----CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence            34456666667777777     8999999999    69999999999998888876

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=98.23  E-value=3.3e-07  Score=68.06  Aligned_cols=86  Identities=19%  Similarity=0.214  Sum_probs=59.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC-ccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW-NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl-~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .+...|++.++|+.+.+. +.++++|.+...++...+ +.+.- ..+|+.+++.+.+...+.. .  .+-++.++.++++
T Consensus        34 ~v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~-~~ldp~~~~~~~~~~r~~~~~~~~~-~--~KdL~~l~~~~~~  108 (159)
T PF03031_consen   34 YVKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVL-DALDPNGKLFSRRLYRDDCTFDKGS-Y--IKDLSKLGRDLDN  108 (159)
T ss_dssp             EEEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHH-HHHTTTTSSEEEEEEGGGSEEETTE-E--E--GGGSSS-GGG
T ss_pred             eEeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHH-Hhhhhhccccccccccccccccccc-c--ccchHHHhhcccc
Confidence            366789999999999777 999999999999999888 66655 4678888877655322211 1  2556667778899


Q ss_pred             EEEEecCHhhHH
Q 024956          168 SLVIEDSVIGVV  179 (260)
Q Consensus       168 ~~~vGD~~~Dv~  179 (260)
                      +++|+|++.-..
T Consensus       109 vvivDD~~~~~~  120 (159)
T PF03031_consen  109 VVIVDDSPRKWA  120 (159)
T ss_dssp             EEEEES-GGGGT
T ss_pred             EEEEeCCHHHee
Confidence            999999997543

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.22  E-value=4.6e-05  Score=68.96  Aligned_cols=90  Identities=16%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.|++...+..|++.|++++++|+.+....+... +..|    ++.+++.     -+|  +-..+.++++.-....++
T Consensus       722 D~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA-~~VG----i~~V~ae-----v~P--~~K~~~Ik~lq~~~~~Va  789 (951)
T KOG0207|consen  722 DQVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVA-QQVG----IDNVYAE-----VLP--EQKAEKIKEIQKNGGPVA  789 (951)
T ss_pred             cccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHH-HhhC----cceEEec-----cCc--hhhHHHHHHHHhcCCcEE
Confidence            477899999999999999999999999999888777 7777    4555542     122  333444444444446799


Q ss_pred             EEecCHhhHHHHHHcCCeEEEE
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ||||+.||-.+...+.+.....
T Consensus       790 MVGDGINDaPALA~AdVGIaig  811 (951)
T KOG0207|consen  790 MVGDGINDAPALAQADVGIAIG  811 (951)
T ss_pred             EEeCCCCccHHHHhhccceeec
Confidence            9999999999988887654433

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=98.19  E-value=8.3e-06  Score=73.40  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=77.8

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ++.|++.+.+++|++.|++++++|+.+........ +..|+..+|.           .-.|+-..++.+.++-.-+-+.|
T Consensus       441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGI~~v~A-----------~~~PedK~~iV~~lQ~~G~~VaM  508 (673)
T PRK14010        441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIA-KEAGVDRFVA-----------ECKPEDKINVIREEQAKGHIVAM  508 (673)
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCceEEc-----------CCCHHHHHHHHHHHHhCCCEEEE
Confidence            77899999999999999999999999999888777 8889864321           22456667777776655567999


Q ss_pred             EecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      +||+.||..+.+.+.+...+- ++  .+-.++.++.+.
T Consensus       509 tGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVL  543 (673)
T PRK14010        509 TGDGTNDAPALAEANVGLAMN-SG--TMSAKEAANLID  543 (673)
T ss_pred             ECCChhhHHHHHhCCEEEEeC-CC--CHHHHHhCCEEE
Confidence            999999999999999865554 32  222245555444

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=98.18  E-value=6e-06  Score=74.35  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ++.|++.+.+++|++.|++++++|+.+........ +..|+.++    +.       .-.|+-..++.++++-.-+-+.|
T Consensus       445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA-~elGId~v----~A-------~~~PedK~~iV~~lQ~~G~~VaM  512 (679)
T PRK01122        445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDF----LA-------EATPEDKLALIRQEQAEGRLVAM  512 (679)
T ss_pred             cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcEE----Ec-------cCCHHHHHHHHHHHHHcCCeEEE
Confidence            67899999999999999999999999999888777 88898542    21       22456666666666655567999


Q ss_pred             EecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      +||+.||..+.+.+.+...+- .+  .+-.++.++.+.
T Consensus       513 tGDGvNDAPALa~ADVGIAMg-sG--TdvAkeAADiVL  547 (679)
T PRK01122        513 TGDGTNDAPALAQADVGVAMN-SG--TQAAKEAGNMVD  547 (679)
T ss_pred             ECCCcchHHHHHhCCEeEEeC-CC--CHHHHHhCCEEE
Confidence            999999999999999866555 32  222245555444

>PLN02645 phosphoglycolate phosphatase

Probab=98.10  E-value=4.7e-05  Score=62.90  Aligned_cols=90  Identities=16%  Similarity=0.135  Sum_probs=70.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .++|++.++|++|+++|++++++||+...   .....+ +.+|+...++.++++.         ......++..+.....
T Consensus        44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l-~~lGi~~~~~~I~ts~---------~~~~~~l~~~~~~~~~  113 (311)
T PLN02645         44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKF-ESLGLNVTEEEIFSSS---------FAAAAYLKSINFPKDK  113 (311)
T ss_pred             ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEeehH---------HHHHHHHHhhccCCCC
Confidence            57899999999999999999999998844   334455 6688877777787763         3556677776665556


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEE
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      .+|++++..+...++.+|+.++.
T Consensus       114 ~V~viG~~~~~~~l~~~Gi~~~~  136 (311)
T PLN02645        114 KVYVIGEEGILEELELAGFQYLG  136 (311)
T ss_pred             EEEEEcCHHHHHHHHHCCCEEec
Confidence            78889999999999999998654

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.09  E-value=1.3e-05  Score=72.37  Aligned_cols=91  Identities=20%  Similarity=0.237  Sum_probs=71.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.|++.+.+++|++.|++++++|+.+....+... +.+|+++++..+.           |+-..+.++++.-.-..++
T Consensus       536 D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA-~~lGId~v~Aell-----------PedK~~~V~~l~~~g~~Va  603 (713)
T COG2217         536 DELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA-KELGIDEVRAELL-----------PEDKAEIVRELQAEGRKVA  603 (713)
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcChHhheccCC-----------cHHHHHHHHHHHhcCCEEE
Confidence            478899999999999999999999999999888777 8899865544332           2444555555554446899


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~  192 (260)
                      ||||+.||..+...+-+...+-.
T Consensus       604 mVGDGINDAPALA~AdVGiAmG~  626 (713)
T COG2217         604 MVGDGINDAPALAAADVGIAMGS  626 (713)
T ss_pred             EEeCCchhHHHHhhcCeeEeecC
Confidence            99999999999999987655444

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=98.03  E-value=1.5e-05  Score=75.29  Aligned_cols=122  Identities=14%  Similarity=0.030  Sum_probs=82.9

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----------------cCCCCCChHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------------VRTGKPSPDIF  154 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------------~~~~kp~~~~~  154 (260)
                      ++.|++.+.+++|++.|++++++|+.....+.... +..|+..--+.++.+++                .-...-.|+-.
T Consensus       579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA-~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~K  657 (941)
T TIGR01517       579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIA-RNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLDK  657 (941)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHHH
Confidence            67889999999999999999999999999888777 88888532122332221                11123345666


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--cccccc
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLR  215 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~  215 (260)
                      .++.+.+.-.-+.++|+||+.||..+.+.|.+...+-..+  .+-.+..+|.++.  ++..+.
T Consensus       658 ~~iV~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~g--tdvAk~aADivL~dd~f~~I~  718 (941)
T TIGR01517       658 QLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISG--TEVAKEASDIILLDDNFASIV  718 (941)
T ss_pred             HHHHHHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCc--cHHHHHhCCEEEecCCHHHHH
Confidence            6666666545567999999999999999998865543221  2223455666655  444433

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.01  E-value=1.9e-05  Score=73.18  Aligned_cols=75  Identities=13%  Similarity=0.025  Sum_probs=54.5

Q ss_pred             CCCCCChHHHHHHHH---HcCCCCCcEEEEecCHhhHHHHHHcCC-------------eEEEEcCCCCccccccccchhc
Q 024956          145 RTGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGM-------------EVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~---~l~~~~~~~~~vGD~~~Dv~~a~~~G~-------------~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      +.+-.|..+++.+++   .++.+++.+++|||+.||..|.+.++-             -+|-+..      ....|.+.+
T Consensus       758 p~gvnKG~Al~~Ll~~~~~~g~~~d~vl~~GDD~nDedMF~~~~~~~~g~~~~~~~~~~~v~VG~------~~S~A~y~L  831 (854)
T PLN02205        758 PQGVSKGLVAKRLLSIMQERGMLPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGQ------KPSKAKYYL  831 (854)
T ss_pred             eCCCCHHHHHHHHHHHHHhcCCCcccEEEEcCCccHHHHHHHhhhhccCCcccccccceeEEECC------CCccCeEec
Confidence            345567788888875   468899999999999999999998862             2233322      135577888


Q ss_pred             cccccccccccCCCCCc
Q 024956          209 NSLLDLRPEKWGLPPFQ  225 (260)
Q Consensus       209 ~~~~~l~~~~~~l~~~~  225 (260)
                      ++..++.+++..+...+
T Consensus       832 ~d~~eV~~lL~~L~~~~  848 (854)
T PLN02205        832 DDTAEIVRLMQGLASVS  848 (854)
T ss_pred             CCHHHHHHHHHHHHhcc
Confidence            88888888877665433

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=98.01  E-value=1.3e-05  Score=73.86  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=73.3

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------------CCCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------------RTGK  148 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------------~~~k  148 (260)
                      ++.|++.+.+++|++.|+++.++|+.+........ +..|+...   +++++..                      ...+
T Consensus       442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfAr  517 (755)
T TIGR01647       442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETA-RRLGLGTN---IYTADVLLKGDNRDDLPSGELGEMVEDADGFAE  517 (755)
T ss_pred             CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCC---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEEe
Confidence            67899999999999999999999999999888777 88888541   1111110                      1223


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      -.|+-...+.+.++-.-+.+.|+||+.||..+.+.+.+...+-
T Consensus       518 ~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~  560 (755)
T TIGR01647       518 VFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA  560 (755)
T ss_pred             cCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec
Confidence            3456666666666655667999999999999999999875553

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=97.99  E-value=2e-05  Score=73.66  Aligned_cols=112  Identities=10%  Similarity=0.065  Sum_probs=78.3

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF  154 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~  154 (260)
                      ++.|++.+.+++|++.|+++.++|+.......... +..|+..  +.++.+.+.                ....-.|+-.
T Consensus       515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA-~~lGI~~--~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~K  591 (867)
T TIGR01524       515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARIC-QEVGIDA--NDFLLGADIEELSDEELARELRKYHIFARLTPMQK  591 (867)
T ss_pred             CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC--CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHHH
Confidence            56789999999999999999999999888887777 8889852  223222111                1122344555


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      .++.+.+.-.-+.+.|+||+.||..+.+.+.+...+- .+  .+-.+..++.++
T Consensus       592 ~~iV~~lq~~G~vVam~GDGvNDapALk~AdVGIAmg-~g--tdvAk~aADiVL  642 (867)
T TIGR01524       592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TA--ADIAKEASDIIL  642 (867)
T ss_pred             HHHHHHHHhCCCEEEEECCCcccHHHHHhCCEEEEeC-Cc--cHHHHHhCCEEE
Confidence            6666666545567999999999999999999876654 32  222245555544

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=97.98  E-value=1.7e-05  Score=74.24  Aligned_cols=112  Identities=13%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF  154 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~  154 (260)
                      ++.|++.+.+++|++.|+++.++|+.+........ +..|+..  +.++++.+.                -...-.|+-.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA-~~lGI~~--~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~K  626 (902)
T PRK10517        550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVC-HEVGLDA--GEVLIGSDIETLSDDELANLAERTTLFARLTPMHK  626 (902)
T ss_pred             cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCc--cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHHH
Confidence            56789999999999999999999999998888777 8889852  233332211                1223345666


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      .++.+.+.-.-+-+.|+||+.||..+.+.+.+...+- .+  .+-.++.+|.++
T Consensus       627 ~~IV~~Lq~~G~vVam~GDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVL  677 (902)
T PRK10517        627 ERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVD-GA--VDIAREAADIIL  677 (902)
T ss_pred             HHHHHHHHHCCCEEEEECCCcchHHHHHhCCEEEEeC-Cc--CHHHHHhCCEEE
Confidence            6666666655567999999999999999999876554 32  222355566555

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=97.92  E-value=2.6e-05  Score=73.11  Aligned_cols=120  Identities=17%  Similarity=0.105  Sum_probs=82.9

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----------------CCCCCChHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----------------RTGKPSPDIF  154 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----------------~~~kp~~~~~  154 (260)
                      ++.|++.+.+++|++.|+++.++|+.+........ +..|+..  +.++++.+.                -...-.|+-.
T Consensus       550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA-~~lGI~~--~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K  626 (903)
T PRK15122        550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKIC-REVGLEP--GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQK  626 (903)
T ss_pred             ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCC--CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHH
Confidence            67789999999999999999999999998888777 8889852  222222211                1223345666


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccc
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRP  216 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~  216 (260)
                      .++.+.+.-.-+-+.|+||+.||..+.+.+.+...+- .+  .+-.++.+|.++  +++..+..
T Consensus       627 ~~iV~~Lq~~G~vVamtGDGvNDaPALk~ADVGIAmg-~g--tdvAkeaADiVLldd~f~~Iv~  687 (903)
T PRK15122        627 SRVLKALQANGHTVGFLGDGINDAPALRDADVGISVD-SG--ADIAKESADIILLEKSLMVLEE  687 (903)
T ss_pred             HHHHHHHHhCCCEEEEECCCchhHHHHHhCCEEEEeC-cc--cHHHHHhcCEEEecCChHHHHH
Confidence            6677666655567999999999999999999875544 32  222255566555  34444433

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=97.91  E-value=3.8e-05  Score=73.10  Aligned_cols=118  Identities=11%  Similarity=0.071  Sum_probs=81.8

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc----------cceEEecccc---------------
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES----------FSVIVGSDEV---------------  144 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~----------f~~i~~~~~~---------------  144 (260)
                      -++.|++.++++.|++.|++++++|+.......... +..|+..-          -+.++++...               
T Consensus       645 Dp~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA-~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~  723 (1053)
T TIGR01523       645 DPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIA-QEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALC  723 (1053)
T ss_pred             cCCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcC
Confidence            367899999999999999999999999999888777 88888421          0123333211               


Q ss_pred             -CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc
Q 024956          145 -RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       145 -~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                       -...-.|+-...+.+.+.-.-+.++|+||+.||..+.+.+.+...+-..+  .+..+..++.++.+
T Consensus       724 ~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~g--t~vak~aADivl~d  788 (1053)
T TIGR01523       724 LVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGING--SDVAKDASDIVLSD  788 (1053)
T ss_pred             eEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCc--cHHHHHhcCEEEec
Confidence             11233455666666666555567999999999999999999876643221  12235566666643

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>PLN02580 trehalose-phosphatase

Probab=97.81  E-value=5.6e-05  Score=63.40  Aligned_cols=70  Identities=16%  Similarity=0.051  Sum_probs=51.3

Q ss_pred             CCCChHHHHHHHHHcCCCCCc---EEEEecCHhhHHHHHHc-----CCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          147 GKPSPDIFLEAAKRLNMEPSS---SLVIEDSVIGVVAGKAA-----GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~---~~~vGD~~~Dv~~a~~~-----G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      .-.|..+++.+++.++++..+   ++||||..||..|.+.+     |+. |.+..+.    ....|.+.+++..++..++
T Consensus       299 g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~-I~Vgn~~----~~t~A~y~L~dp~eV~~~L  373 (384)
T PLN02580        299 DWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYG-ILVSSVP----KESNAFYSLRDPSEVMEFL  373 (384)
T ss_pred             CCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceE-EEEecCC----CCccceEEcCCHHHHHHHH
Confidence            456779999999999987653   38999999999999963     544 3333211    1245788899999988777


Q ss_pred             cCC
Q 024956          219 WGL  221 (260)
Q Consensus       219 ~~l  221 (260)
                      ..|
T Consensus       374 ~~L  376 (384)
T PLN02580        374 KSL  376 (384)
T ss_pred             HHH
Confidence            544

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.79  E-value=0.00011  Score=69.20  Aligned_cols=104  Identities=15%  Similarity=0.132  Sum_probs=78.3

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEecccc----------------CCCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEV----------------RTGKPS  150 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~----------------~~~kp~  150 (260)
                      .-++.+++.++++.|++.|++++++|+.......... +..|+..--.  .++.+...                ...+-.
T Consensus       545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa-~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvs  623 (917)
T COG0474         545 EDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIA-KECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVS  623 (917)
T ss_pred             cCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHH-HHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcC
Confidence            3578899999999999999999999999999888777 8888754332  24443221                123344


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      |+...++.+.++-.-.-+.|.||+.||+.|.+.|.+...+...
T Consensus       624 P~qK~~IV~~lq~~g~vVamtGDGvNDapALk~ADVGIamg~~  666 (917)
T COG0474         624 PEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGGE  666 (917)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeCCCchhHHHHHhcCccEEeccc
Confidence            5666666666665567799999999999999999988766653

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.77  E-value=2.1e-05  Score=62.65  Aligned_cols=69  Identities=13%  Similarity=-0.064  Sum_probs=55.8

Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc-------CCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-------GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~-------G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +..|...++.++++++.++++++||||+.||+.|++.+       |..++.+..+    ..+..+++++++..++..++.
T Consensus       165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~~g----~~~~~A~~~~~~~~~v~~~L~  240 (244)
T TIGR00685       165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIGSG----SKKTVAKFHLTGPQQVLEFLG  240 (244)
T ss_pred             CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEecC----CcCCCceEeCCCHHHHHHHHH
Confidence            33456999999999999999999999999999999998       6666777532    234668899999998876654

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=97.72  E-value=0.00026  Score=48.13  Aligned_cols=86  Identities=19%  Similarity=0.155  Sum_probs=57.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      ..+++||+.+++++|+++|++++++||++..   .....| +..|+.--.+.++++.         ......+++. ...
T Consensus        12 g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L-~~~Gi~~~~~~i~ts~---------~~~~~~l~~~-~~~   80 (101)
T PF13344_consen   12 GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL-KKLGIPVDEDEIITSG---------MAAAEYLKEH-KGG   80 (101)
T ss_dssp             TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH-HHTTTT--GGGEEEHH---------HHHHHHHHHH-TTS
T ss_pred             CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhcCcCCCcCEEEChH---------HHHHHHHHhc-CCC
Confidence            4678999999999999999999999999644   344566 6788875557777653         3445555553 234


Q ss_pred             CcEEEEecCHhhHHHHHHcCC
Q 024956          166 SSSLVIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~  186 (260)
                      ..++++|.. ...+.++.+|+
T Consensus        81 ~~v~vlG~~-~l~~~l~~~G~  100 (101)
T PF13344_consen   81 KKVYVLGSD-GLREELREAGF  100 (101)
T ss_dssp             SEEEEES-H-HHHHHHHHTTE
T ss_pred             CEEEEEcCH-HHHHHHHHcCC
Confidence            567777755 66666777664

...

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=97.72  E-value=0.00011  Score=69.93  Aligned_cols=123  Identities=15%  Similarity=0.093  Sum_probs=81.9

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc------------------------ceEEecccc--
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEV--  144 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f------------------------~~i~~~~~~--  144 (260)
                      ++.|++.+.++++++.|++++++|+.....+.... +..|+..--                        ..++++...  
T Consensus       568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia-~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~  646 (997)
T TIGR01106       568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKD  646 (997)
T ss_pred             CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhh
Confidence            66789999999999999999999999999888777 777773210                        023332211  


Q ss_pred             ----------------CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          145 ----------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       145 ----------------~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                                      -..+-.|+-...+.+.+.-...-++|+||+.||+.|.+.+.+...+-..|.  +-.+..++.++
T Consensus       647 l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~--~vak~aADivL  724 (997)
T TIGR01106       647 MTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS--DVSKQAADMIL  724 (997)
T ss_pred             CCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCccc--HHHHHhhceEE
Confidence                            123344555555555555444579999999999999999998765543321  11245566665


Q ss_pred             cc--cccccc
Q 024956          209 NS--LLDLRP  216 (260)
Q Consensus       209 ~~--~~~l~~  216 (260)
                      .+  +..+..
T Consensus       725 ~dd~f~~Iv~  734 (997)
T TIGR01106       725 LDDNFASIVT  734 (997)
T ss_pred             ecCCHHHHHH
Confidence            54  444433

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=97.62  E-value=0.00045  Score=48.74  Aligned_cols=30  Identities=13%  Similarity=0.265  Sum_probs=24.9

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHh
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRAT  120 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~  120 (260)
                      .+.+++.+.|++++++|+.++++|+++...
T Consensus        24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~   53 (126)
T TIGR01689        24 APILAVIEKLRHYKALGFEIVISSSRNMRT   53 (126)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEECCCCchh
Confidence            355677889999999999999999997764

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=97.58  E-value=0.00044  Score=52.68  Aligned_cols=90  Identities=13%  Similarity=0.132  Sum_probs=56.3

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--ccce--EEeccc--------cC--CCCCChHHHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSV--IVGSDE--------VR--TGKPSPDIFLE  156 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f~~--i~~~~~--------~~--~~kp~~~~~~~  156 (260)
                      ...|++.++|+.+.+. +.++|.|++...++...+ ..+++..  .+..  +..+..        .+  ..|+    +..
T Consensus        45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l-~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~  118 (195)
T TIGR02245        45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKM-TELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGV  118 (195)
T ss_pred             EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHH-HHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHH
Confidence            4679999999999996 999999999999999888 6665421  1111  111110        11  0122    222


Q ss_pred             HHHHcC--CCCCcEEEEecCHhhHHHHHHcCC
Q 024956          157 AAKRLN--MEPSSSLVIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       157 ~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~G~  186 (260)
                      +-..++  .+.+++++|+|++.-..+=-..|+
T Consensus       119 lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i  150 (195)
T TIGR02245       119 IWALLPEFYSMKNTIMFDDLRRNFLMNPQNGL  150 (195)
T ss_pred             hhhhcccCCCcccEEEEeCCHHHHhcCCCCcc
Confidence            223444  377899999999965444333343

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.00024  Score=63.99  Aligned_cols=103  Identities=16%  Similarity=0.118  Sum_probs=77.5

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc----eEEecccc----------------CCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEV----------------RTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~----~i~~~~~~----------------~~~kp  149 (260)
                      -+|.+++.+.++.+++.|+++.++|+.......... ++.|+...-+    ..+++...                -..+-
T Consensus       583 DPPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~-r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~  661 (972)
T KOG0202|consen  583 DPPRPEVADAIELCRQAGIRVIMITGDNKETAEAIA-REIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA  661 (972)
T ss_pred             CCCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHH-HHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence            367899999999999999999999999999888777 7788654333    22222111                12233


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .|....++.+.|+-.-+-+.|-||+.||..+.+.+.+..++--.
T Consensus       662 ~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~  705 (972)
T KOG0202|consen  662 EPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGIS  705 (972)
T ss_pred             CchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCC
Confidence            45666777777777777899999999999999999987666533

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=97.51  E-value=0.00021  Score=68.55  Aligned_cols=127  Identities=15%  Similarity=0.119  Sum_probs=82.2

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--------------------------------
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--------------------------------  136 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--------------------------------  136 (260)
                      +-++.|++.++++.|++.|++++++|+...+.+.... ...|+...-.                                
T Consensus       629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA-~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~  707 (1057)
T TIGR01652       629 EDKLQEGVPETIELLRQAGIKIWVLTGDKVETAINIG-YSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFN  707 (1057)
T ss_pred             hhhhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhh
Confidence            3578899999999999999999999998888776665 5555432100                                


Q ss_pred             ---------eEEecccc----------------------CCCCCChHHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHc
Q 024956          137 ---------VIVGSDEV----------------------RTGKPSPDIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       137 ---------~i~~~~~~----------------------~~~kp~~~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~  184 (260)
                               .+++++..                      -..+-.|.-...+.+.+.-. ..-++++||+.||+.|.+.|
T Consensus       708 ~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~A  787 (1057)
T TIGR01652       708 NLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEA  787 (1057)
T ss_pred             hhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhhc
Confidence                     12222110                      01122233333333333322 45799999999999999999


Q ss_pred             CCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          185 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       185 G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      .+.. .+.. ....+....+|+++.++..|...+
T Consensus       788 dVGI-gi~g-~eg~qA~~aaD~~i~~F~~L~~ll  819 (1057)
T TIGR01652       788 DVGV-GISG-KEGMQAVMASDFAIGQFRFLTKLL  819 (1057)
T ss_pred             Ceee-EecC-hHHHHHHHhhhhhhhhHHHHHHHH
Confidence            8765 4333 222234567899999888777665

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.49  E-value=0.00068  Score=53.80  Aligned_cols=49  Identities=16%  Similarity=0.274  Sum_probs=43.8

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD  142 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~  142 (260)
                      .|.+.+.|.+|++.|..+++.|.+.++++...+ +..++..+|+.+++..
T Consensus       144 ~~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl-~~~~L~~~Fd~ii~~G  192 (297)
T PF05152_consen  144 DPAVYDSLRELKEQGCVLVLWSYGNREHVRHSL-KELKLEGYFDIIICGG  192 (297)
T ss_pred             ChHHHHHHHHHHHcCCEEEEecCCCHHHHHHHH-HHhCCccccEEEEeCC
Confidence            456678899999999999999999999999999 8899999999998854

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.41  E-value=0.0017  Score=47.42  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhc-----CCccccceEEec-cc------cCCCCCChHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQH-----GWNESFSVIVGS-DE------VRTGKPSPDIFLE  156 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~-----gl~~~f~~i~~~-~~------~~~~kp~~~~~~~  156 (260)
                      ..+|+.++++.++++||++..+|+++.-.   .+..| ...     ++..  ..++.+ +.      -..-..+|+.|+.
T Consensus        28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L-~~~~q~~~~lP~--Gpv~~sP~~l~~al~rEvi~~~p~~fK~  104 (157)
T PF08235_consen   28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL-AQHQQQGHNLPD--GPVLLSPDSLFSALHREVISKDPEEFKI  104 (157)
T ss_pred             hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH-HHHHhCCccCCC--CCEEECCcchhhhhhccccccChHHHHH
Confidence            45799999999999999999999987544   33344 322     3321  112222 10      0011123343332


Q ss_pred             -HHHHc-CC----CCCcEEEEecCHhhHHHHHHcCCe
Q 024956          157 -AAKRL-NM----EPSSSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       157 -~l~~l-~~----~~~~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                       +|+.+ ..    ...=...+|++.+|+.+=+++|+.
T Consensus       105 ~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip  141 (157)
T PF08235_consen  105 ACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIP  141 (157)
T ss_pred             HHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCC
Confidence             23332 11    222356699999999999999985

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=97.40  E-value=0.0059  Score=49.85  Aligned_cols=103  Identities=15%  Similarity=0.213  Sum_probs=72.1

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh---cCCccccceEEecccc-----CCCCCC-----------
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ---HGWNESFSVIVGSDEV-----RTGKPS-----------  150 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~---~gl~~~f~~i~~~~~~-----~~~kp~-----------  150 (260)
                      +...|....+|+.|+++|.++.++||++..++..-+ +.   -.+.+.||.++..-.-     ...+|-           
T Consensus       239 i~r~~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM-~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~  317 (510)
T KOG2470|consen  239 IERNPQLLAFLRKLKDHGKKLFLITNSPYSFVDKGM-RFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLL  317 (510)
T ss_pred             hhccHHHHHHHHHHHHhcCcEEEEeCCchhhhhcCc-eeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchh
Confidence            455678899999999999999999999998876433 21   1355677877653210     011110           


Q ss_pred             --------------hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956          151 --------------PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS  193 (260)
Q Consensus       151 --------------~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~  193 (260)
                                    ...+...++.-++.-.+++||||.+ +|+...- ..|+.+-.+-.
T Consensus       318 wdkv~klekgkiYy~G~l~~flelt~WrG~~VlYFGDHlySDLad~tlkhgWRTgAII~  376 (510)
T KOG2470|consen  318 WDKVDKLEKGKIYYQGNLKSFLELTGWRGPRVLYFGDHLYSDLADLTLKHGWRTGAIIP  376 (510)
T ss_pred             hhhhhhcccCceeeeccHHHHHHHhccCCCeeEEecCcchhhhhhhHhhcccccccchH
Confidence                          0224566777788889999999999 8998877 88888766543

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=97.39  E-value=0.00097  Score=58.93  Aligned_cols=86  Identities=15%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.+++.+.+++|++.|++++++|+.......... +..|+       +       ..-.|+-..++++.+.-....+.
T Consensus       346 d~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia-~~lgi-------~-------~~~~p~~K~~~v~~l~~~g~~v~  410 (499)
T TIGR01494       346 DPLRDDAKETISELREAGIRVIMLTGDNVLTAKAIA-KELGI-------F-------ARVTPEEKAALVEALQKKGRVVA  410 (499)
T ss_pred             CCCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCc-------e-------eccCHHHHHHHHHHHHHCCCEEE
Confidence            478899999999999999999999999988877666 76765       1       11234555555555543446799


Q ss_pred             EEecCHhhHHHHHHcCCeEEE
Q 024956          170 VIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      |+||+.||..+.+.+.+...+
T Consensus       411 ~vGDg~nD~~al~~Advgia~  431 (499)
T TIGR01494       411 MTGDGVNDAPALKKADVGIAM  431 (499)
T ss_pred             EECCChhhHHHHHhCCCcccc
Confidence            999999999999999876333

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=97.39  E-value=0.0013  Score=63.21  Aligned_cols=42  Identities=14%  Similarity=0.143  Sum_probs=37.3

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      -++.|++.+.+++|++.|++++++|+.+........ +..|+.
T Consensus       655 d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA-~~~gii  696 (1054)
T TIGR01657       655 NPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVA-RECGIV  696 (1054)
T ss_pred             cCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCC
Confidence            468899999999999999999999999998888777 777874

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.38  E-value=0.00067  Score=57.12  Aligned_cols=98  Identities=17%  Similarity=0.126  Sum_probs=82.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCC--ChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      .....++.+.+.+.|.+++++|+-  +....+..| ..+|.+-.--.++.+......|.+...|..+++.-+++|..++.
T Consensus       101 n~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L-~s~g~d~~nipiY~S~e~rl~KnSg~LFk~Vlk~EnVd~~~w~H  179 (635)
T COG5610         101 NKKNIELVEEAIKNEKRVILISDMYLPSSILRTFL-NSFGPDFNNIPIYMSSEFRLKKNSGNLFKAVLKLENVDPKKWIH  179 (635)
T ss_pred             cccchHHHHHHHhCCCeEEEEecccCcHHHHHHHH-HhcCCCccCceeeecceeehhcccchHHHHHHhhcCCChhheEE
Confidence            345678999999999999999987  444566666 77777654445778877888899999999999999999999999


Q ss_pred             EecCH-hhHHHHHHcCCeEEEE
Q 024956          171 IEDSV-IGVVAGKAAGMEVVAV  191 (260)
Q Consensus       171 vGD~~-~Dv~~a~~~G~~~i~~  191 (260)
                      +||+. .|..+++..|+.+...
T Consensus       180 ~GDN~~aD~l~pk~LgI~Tlf~  201 (635)
T COG5610         180 CGDNWVADYLKPKNLGISTLFY  201 (635)
T ss_pred             ecCchhhhhcCccccchhHHHH
Confidence            99999 7999999999987655

>COG4030 Uncharacterized protein conserved in archaea [Function unknown]

Probab=97.27  E-value=0.01  Score=45.63  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=31.0

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW  131 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl  131 (260)
                      .++.||+.+++..|.+. .+-+++|.+...++++.. +..|+
T Consensus        82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a-~~ig~  121 (315)
T COG4030          82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTA-SMIGV  121 (315)
T ss_pred             cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHH-HhcCC
Confidence            68899999999999987 677888877777776555 55544

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.26  E-value=0.0023  Score=54.40  Aligned_cols=86  Identities=21%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----CCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----RTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ...+.+..|+++|+-+++.|-+....++..+ .++.     +.++--++.    ..-.|+.+-++++++++++..+..+|
T Consensus       259 ~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF-~khp-----~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvF  332 (574)
T COG3882         259 TFQNFIKGLKKQGVLLAVCSKNTEKDAKEVF-RKHP-----DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVF  332 (574)
T ss_pred             HHHHHHHHHHhccEEEEEecCCchhhHHHHH-hhCC-----CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEE
Confidence            4457888999999999999999888888777 4432     333333222    23568889999999999999999999


Q ss_pred             EecCHhhHHHHHHcCC
Q 024956          171 IEDSVIGVVAGKAAGM  186 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~  186 (260)
                      ++|++...+-.+..+-
T Consensus       333 iDD~p~ErE~vk~~~~  348 (574)
T COG3882         333 IDDNPAERELVKRELP  348 (574)
T ss_pred             ecCCHHHHHHHHhcCc
Confidence            9999988877777664

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=97.24  E-value=0.007  Score=52.34  Aligned_cols=89  Identities=10%  Similarity=-0.059  Sum_probs=51.3

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--------eEEeccccCCCCCChHH-HHHHHHHcCCCCCcEE
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--------VIVGSDEVRTGKPSPDI-FLEAAKRLNMEPSSSL  169 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--------~i~~~~~~~~~kp~~~~-~~~~l~~l~~~~~~~~  169 (260)
                      .++.+++.| +++++|..++..++..+++++|.+..+.        ..+++-..+..  ..+. ...+.+.++ +....+
T Consensus       101 ~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~VvGTEL~v~~~G~~TG~~~G~n--~~ek~~~rl~~~~g-~~~~~v  176 (498)
T PLN02499        101 AWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADEVIGSELVVNRFGFATGFIRGTD--VDQSVANRVANLFV-DERPQL  176 (498)
T ss_pred             HHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCceEEeeeEEEeeccEEEEEEecCc--cHHHHHHHHHHHhC-ccCcee
Confidence            556667777 9999999999999999966688754421        11111111111  1233 334444455 334577


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcC
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      -+||+..|-....-+  +.+++..
T Consensus       177 g~~~~~~~~~f~~~c--k~~~~~~  198 (498)
T PLN02499        177 GLGRISASSSFLSLC--KEQIHPP  198 (498)
T ss_pred             cccCCcccchhhhhC--ceEEecC
Confidence            788877655544443  3444433

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=97.19  E-value=0.0044  Score=50.44  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .++|++.++|++|+++|++++++||++..   .....+ +.+|+....+.++++.         ......+++.......
T Consensus        18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l-~~~G~~~~~~~i~ts~---------~~~~~~l~~~~~~~~~   87 (279)
T TIGR01452        18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKF-ARLGFNGLAEQLFSSA---------LCAARLLRQPPDAPKA   87 (279)
T ss_pred             eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEecHH---------HHHHHHHHhhCcCCCE
Confidence            47889999999999999999999997643   233456 6678765555666542         4455666665445567


Q ss_pred             EEEEecCHhhHHHHHHcCCeEE
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVV  189 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i  189 (260)
                      ++++|+. .....++..|+..+
T Consensus        88 v~~iG~~-~~~~~l~~~g~~~~  108 (279)
T TIGR01452        88 VYVIGEE-GLRAELDAAGIRLA  108 (279)
T ss_pred             EEEEcCH-HHHHHHHHCCCEEe
Confidence            9999985 34455677887654

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PLN03190 aminophospholipid translocase; Provisional

Probab=97.17  E-value=0.00039  Score=66.89  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=40.4

Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      .-++++||+.||+.|.+.|.+.. .+.. ....+....+|+.+..+.-|.++++
T Consensus       872 ~vtlaIGDGaNDv~mIq~AdVGI-GIsG-~EG~qA~~aSDfaI~~Fr~L~rLLl  923 (1178)
T PLN03190        872 DMTLAIGDGANDVSMIQMADVGV-GISG-QEGRQAVMASDFAMGQFRFLVPLLL  923 (1178)
T ss_pred             cEEEEECCCcchHHHHHhcCeee-eecC-chhHHHHHhhccchhhhHHHHHHHH
Confidence            45899999999999999998764 4433 3333445678999999998888876

>PLN03017 trehalose-phosphatase

Probab=97.15  E-value=0.0012  Score=55.19  Aligned_cols=72  Identities=13%  Similarity=-0.098  Sum_probs=51.6

Q ss_pred             CCChHHHHHHHHHcCCCC---CcEEEEecCHhhHHHHHHcC----CeEEEEcCCCCccccccccchhccccccccccccC
Q 024956          148 KPSPDIFLEAAKRLNMEP---SSSLVIEDSVIGVVAGKAAG----MEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~---~~~~~vGD~~~Dv~~a~~~G----~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      -.|..+++.+++.++...   .-++|+||...|..+++.+.    -..|.|...    .....|.+.+++..++..++..
T Consensus       282 ~dKG~Av~~LL~~l~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~VG~~----~k~T~A~y~L~dp~eV~~fL~~  357 (366)
T PLN03017        282 WDKGKALEFLLESLGFGNTNNVFPVYIGDDRTDEDAFKMLRDRGEGFGILVSKF----PKDTDASYSLQDPSEVMDFLAR  357 (366)
T ss_pred             CCHHHHHHHHHHhcccccCCCceEEEeCCCCccHHHHHHHhhcCCceEEEECCC----CCCCcceEeCCCHHHHHHHHHH
Confidence            356789999999988653   35899999999988888763    234555431    1235688899999998887765


Q ss_pred             CCC
Q 024956          221 LPP  223 (260)
Q Consensus       221 l~~  223 (260)
                      |..
T Consensus       358 L~~  360 (366)
T PLN03017        358 LVE  360 (366)
T ss_pred             HHH
Confidence            433

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=97.07  E-value=0.0067  Score=48.65  Aligned_cols=87  Identities=21%  Similarity=0.238  Sum_probs=54.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      ..+++||+.++|+.|+++|++++++||++...   ..+.|....++....+.++++..         .....+.+.. ++
T Consensus        22 G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~~i~TS~~---------at~~~l~~~~-~~   91 (269)
T COG0647          22 GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPDDIVTSGD---------ATADYLAKQK-PG   91 (269)
T ss_pred             CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHHHeecHHH---------HHHHHHHhhC-CC
Confidence            45789999999999999999999999997654   34555233556566677777642         2223332221 22


Q ss_pred             CcEEEEecCHhhHHHHHHcCC
Q 024956          166 SSSLVIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~  186 (260)
                      ..++.|| ...+.+.++.+|+
T Consensus        92 ~kv~viG-~~~l~~~l~~~G~  111 (269)
T COG0647          92 KKVYVIG-EEGLKEELEGAGF  111 (269)
T ss_pred             CEEEEEC-CcchHHHHHhCCc
Confidence            4555555 3344455555554

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=96.75  E-value=0.0015  Score=45.97  Aligned_cols=85  Identities=9%  Similarity=0.135  Sum_probs=57.3

Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCC--hHhHHH---HHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSH--RATIES---KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~--~~~~~~---~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      +..+...|++.+.+++|.+. +.++++|...  +...+.   .+.+.+.+.++-..++++.-.-                
T Consensus        64 FRnL~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~vfCgnKni----------------  126 (180)
T COG4502          64 FRNLGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNIVFCGNKNI----------------  126 (180)
T ss_pred             hhhcCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCChhhEEEecCCCe----------------
Confidence            34578899999999999998 9999999872  222222   2226677776666777653211                


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                         -..-++|+|++-.++..+...   |++...
T Consensus       127 ---vkaDilIDDnp~nLE~F~G~k---IlFdA~  153 (180)
T COG4502         127 ---VKADILIDDNPLNLENFKGNK---ILFDAH  153 (180)
T ss_pred             ---EEeeEEecCCchhhhhccCce---EEEecc
Confidence               112489999999888776554   455553

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=96.48  E-value=0.0027  Score=43.15  Aligned_cols=17  Identities=35%  Similarity=0.628  Sum_probs=13.0

Q ss_pred             EEEecCCccccCHHHHH
Q 024956           12 VILDLDGTLLNTDGMFS   28 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~   28 (260)
                      ++||+||||++....+.
T Consensus         1 ~l~D~dGvl~~g~~~ip   17 (101)
T PF13344_consen    1 FLFDLDGVLYNGNEPIP   17 (101)
T ss_dssp             EEEESTTTSEETTEE-T
T ss_pred             CEEeCccEeEeCCCcCc
Confidence            68999999998755443

...

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.0065  Score=52.30  Aligned_cols=90  Identities=14%  Similarity=0.131  Sum_probs=68.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ...||.+|-+.+|++.|++.+.+|+.++-...... ...|+++++..         .  +|+-..+++++.+-.-.=+.|
T Consensus       447 ivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA-~EAGVDdfiAe---------a--tPEdK~~~I~~eQ~~grlVAM  514 (681)
T COG2216         447 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIA-AEAGVDDFIAE---------A--TPEDKLALIRQEQAEGRLVAM  514 (681)
T ss_pred             hcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHH-HHhCchhhhhc---------C--ChHHHHHHHHHHHhcCcEEEE
Confidence            45699999999999999999999998887766555 66777543221         2  345666677776666677999


Q ss_pred             EecCHhhHHHHHHcCCeEEEEc
Q 024956          171 IEDSVIGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~~  192 (260)
                      .||+.||..+...+....++-+
T Consensus       515 tGDGTNDAPALAqAdVg~AMNs  536 (681)
T COG2216         515 TGDGTNDAPALAQADVGVAMNS  536 (681)
T ss_pred             cCCCCCcchhhhhcchhhhhcc
Confidence            9999999999999887655443

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.43  E-value=0.042  Score=42.17  Aligned_cols=92  Identities=9%  Similarity=0.041  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccce-EEeccccCCCCCChHHHHHHHHHcC-CCCCc-
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSV-IVGSDEVRTGKPSPDIFLEAAKRLN-MEPSS-  167 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~-i~~~~~~~~~kp~~~~~~~~l~~l~-~~~~~-  167 (260)
                      |.....|..+++.  ...|+.-....   .....| +..|+.-.... .+..-+...+|-  .+...+++... ....+ 
T Consensus       137 pre~aaLa~~rEy--seti~~rs~d~~~~~~~~~L-~e~glt~v~garf~~v~~as~gKg--~Aa~~ll~~y~rl~~~r~  211 (274)
T COG3769         137 PREQAALAMLREY--SETIIWRSSDERMAQFTARL-NERGLTFVHGARFWHVLDASAGKG--QAANWLLETYRRLGGART  211 (274)
T ss_pred             ChHHhHHHHHHHh--hhheeecccchHHHHHHHHH-HhcCceEEeccceEEEeccccCcc--HHHHHHHHHHHhcCceeE
Confidence            4444555555553  44555433333   134455 55565422211 111111122222  34444444332 23334 


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEE
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      ++.+||++||+.+....-..++.
T Consensus       212 t~~~GDg~nD~Pl~ev~d~AfiV  234 (274)
T COG3769         212 TLGLGDGPNDAPLLEVMDYAFIV  234 (274)
T ss_pred             EEecCCCCCcccHHHhhhhheee
Confidence            89999999999999887665443

>KOG3128 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.0096  Score=46.48  Aligned_cols=96  Identities=14%  Similarity=0.216  Sum_probs=61.1

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----cc----cCCCCC-------ChHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DE----VRTGKP-------SPDI  153 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----~~----~~~~kp-------~~~~  153 (260)
                      .+.+.+|..++++.|+++++|+.++|.+-...++..+....++-+ +-.+++.    +.    .+..+|       +-..
T Consensus       136 ~i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~p-n~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v  214 (298)
T KOG3128|consen  136 NIALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHP-NVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSV  214 (298)
T ss_pred             hHHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCc-cHHhhhhhhhhcccchhhhhhHHHHHHHccchHH
Confidence            345677899999999999999999999999888887744444332 2222111    10    111111       1122


Q ss_pred             HHHHHHHcC--CCCCcEEEEecCHhhHHHHHHcC
Q 024956          154 FLEAAKRLN--MEPSSSLVIEDSVIGVVAGKAAG  185 (260)
Q Consensus       154 ~~~~l~~l~--~~~~~~~~vGD~~~Dv~~a~~~G  185 (260)
                      ++...+.+.  -.-.++++-||+..|+.|+..+-
T Consensus       215 ~~~~s~yf~~~~~~~nVillGdsigdl~ma~gv~  248 (298)
T KOG3128|consen  215 LQNESEYFHQLAGRVNVILLGDSIGDLHMADGVP  248 (298)
T ss_pred             HHhhhHHHhhccCCceEEEeccccccchhhcCCc
Confidence            333333333  24468999999999999987653

>TIGR01658 EYA-cons_domain eyes absent protein conserved domain

Probab=96.41  E-value=0.022  Score=44.44  Aligned_cols=79  Identities=15%  Similarity=0.069  Sum_probs=60.0

Q ss_pred             EEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCe
Q 024956          110 MALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       110 i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      =++||++.-...-.+. -.+++..+|.  .|+++-.++    +...|+++.+++|-+...-++|||+...-.+|+..+++
T Consensus       178 NvLVTs~qLVPaLaKc-LLy~L~~~f~ieNIYSa~kvG----K~~cFe~I~~Rfg~p~~~f~~IGDG~eEe~aAk~l~wP  252 (274)
T TIGR01658       178 NVLVTSGQLIPSLAKC-LLFRLDTIFRIENVYSSIKVG----KLQCFKWIKERFGHPKVRFCAIGDGWEECTAAQAMNWP  252 (274)
T ss_pred             EEEEEcCccHHHHHHH-HHhccCCccccccccchhhcc----hHHHHHHHHHHhCCCCceEEEeCCChhHHHHHHhcCCC
Confidence            3566665544333333 4567777774  577765544    35899999999998788999999999999999999999


Q ss_pred             EEEEcC
Q 024956          188 VVAVPS  193 (260)
Q Consensus       188 ~i~~~~  193 (260)
                      ++-++.
T Consensus       253 Fw~I~~  258 (274)
T TIGR01658       253 FVKIDL  258 (274)
T ss_pred             eEEeec
Confidence            998877

This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.

>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice

Probab=96.31  E-value=0.011  Score=46.50  Aligned_cols=94  Identities=20%  Similarity=0.266  Sum_probs=53.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----cc----cCCCCC-------ChHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----DE----VRTGKP-------SPDI  153 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----~~----~~~~kp-------~~~~  153 (260)
                      .+.+.+|+.++++.|+++++|+.|+|++-...++..+ ++.+...-==.+++-    ++    .+...|       +...
T Consensus        88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL-~q~~~~~~Nv~VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~~~  166 (246)
T PF05822_consen   88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVL-RQAGVFHPNVKVVSNFMDFDEDGVLVGFKGPLIHTFNKNESA  166 (246)
T ss_dssp             ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHH-HHTT--BTTEEEEEE-EEE-TTSBEEEE-SS---TT-HHHHH
T ss_pred             chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHH-HHcCCCCCCeEEEeeeEEECCcceEeecCCCceEEeeCCccc
Confidence            5789999999999999999999999999999999999 555542110011111    00    011111       1111


Q ss_pred             HH--HHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956          154 FL--EAAKRLNMEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       154 ~~--~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      +.  ...+.+. .-.+++..||+..|+.|+..+
T Consensus       167 l~~~~~~~~~~-~R~NvlLlGDslgD~~Ma~G~  198 (246)
T PF05822_consen  167 LEDSPYFKQLK-KRTNVLLLGDSLGDLHMADGV  198 (246)
T ss_dssp             HTTHHHHHCTT-T--EEEEEESSSGGGGTTTT-
T ss_pred             ccCchHHHHhc-cCCcEEEecCccCChHhhcCC
Confidence            21  1112222 336899999999999999877

The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.

>KOG0206 consensus P-type ATPase [General function prediction only]

Probab=96.22  E-value=0.056  Score=51.70  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=29.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIES  123 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~  123 (260)
                      +-++.+|+.+.++.|+++|++++++|+-..+.+..
T Consensus       649 EDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiN  683 (1151)
T KOG0206|consen  649 EDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAIN  683 (1151)
T ss_pred             echhccCchHHHHHHHHcCCEEEEEcCcHHHHHHH
Confidence            46788999999999999999999999876655443

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=96.15  E-value=0.07  Score=42.17  Aligned_cols=73  Identities=15%  Similarity=0.064  Sum_probs=49.1

Q ss_pred             CCcEEEEeCCChHhHHHHHH--hhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc
Q 024956          107 GVPMALASNSHRATIESKIS--YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA  184 (260)
Q Consensus       107 g~~i~i~s~~~~~~~~~~l~--~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~  184 (260)
                      -+++++||.++...-++.++  +..|+  .+|..+.-.    +-+|    ..+|+.++-.    +||+|....+..|. .
T Consensus       186 piRtalVTAR~apah~RvI~TLr~Wgv--~vDEafFLg----G~~K----~~vL~~~~ph----IFFDDQ~~H~~~a~-~  250 (264)
T PF06189_consen  186 PIRTALVTARSAPAHERVIRTLRSWGV--RVDEAFFLG----GLPK----GPVLKAFRPH----IFFDDQDGHLESAS-K  250 (264)
T ss_pred             ceEEEEEEcCCCchhHHHHHHHHHcCC--cHhHHHHhC----CCch----hHHHHhhCCC----EeecCchhhhhHhh-c
Confidence            48899999887665555553  44444  355544322    2222    3466666654    99999999999998 8


Q ss_pred             CCeEEEEcCC
Q 024956          185 GMEVVAVPSL  194 (260)
Q Consensus       185 G~~~i~~~~~  194 (260)
                      ++.++.|..+
T Consensus       251 ~vps~hVP~g  260 (264)
T PF06189_consen  251 VVPSGHVPYG  260 (264)
T ss_pred             CCCEEeccCC
Confidence            8888888764

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=96.14  E-value=0.073  Score=42.52  Aligned_cols=50  Identities=10%  Similarity=0.310  Sum_probs=39.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCC---ChHhHHHHHHhhcCCccccceEEec
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~---~~~~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      .+.|++.++|++|+++|++++++||+   ........+ +..|+....+.++++
T Consensus        17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l-~~~g~~~~~~~iit~   69 (249)
T TIGR01457        17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEML-ASFDIPATLETVFTA   69 (249)
T ss_pred             eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCChhhEeeH
Confidence            45679999999999999999999984   455566677 778887666777765

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.11  E-value=0.064  Score=38.64  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=58.9

Q ss_pred             CCCCccHHHHHHHHHHC-C-CcEEEEeCCChH------h-HHHHHHhhcCCccccceEEeccccCCCCCC--hHHHHHHH
Q 024956           90 VKALPGANRLIKHLSCH-G-VPMALASNSHRA------T-IESKISYQHGWNESFSVIVGSDEVRTGKPS--PDIFLEAA  158 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~-g-~~i~i~s~~~~~------~-~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~--~~~~~~~l  158 (260)
                      ..+.|....-+++++.. | ..++++||+.-.      . ....++...|+.      +-..  ...||.  .+.+.+..
T Consensus        60 ~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIp------VlRH--s~kKP~ct~E~~~y~~  131 (190)
T KOG2961|consen   60 LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIP------VLRH--SVKKPACTAEEVEYHF  131 (190)
T ss_pred             cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCc------eEee--cccCCCccHHHHHHHh
Confidence            45566667777777763 3 678888876321      1 122232333432      1111  123332  23333333


Q ss_pred             HHcC-CCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCC
Q 024956          159 KRLN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP  195 (260)
Q Consensus       159 ~~l~-~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~  195 (260)
                      ..-. ..+++++||||.+ .|+.+|..+|--.++...+.
T Consensus       132 ~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~gv  170 (190)
T KOG2961|consen  132 GNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEPGV  170 (190)
T ss_pred             CCcccCChhHeEEEccchhhhHhhhhhccceeEEecccc
Confidence            2222 5789999999999 99999999999999987743

>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]

Probab=96.05  E-value=0.22  Score=41.42  Aligned_cols=80  Identities=21%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             CcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 024956          108 VPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG  185 (260)
Q Consensus       108 ~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G  185 (260)
                      .--+++|+..-...-.++ -.+|+...|  +.|++...+++    ...|+++.+++|- .-.-++|||+.....+|+...
T Consensus       371 cvnVlvTttqLipalaKv-LL~gLg~~fpiENIYSa~kiGK----escFerI~~RFg~-K~~yvvIgdG~eee~aAK~ln  444 (468)
T KOG3107|consen  371 CVNVLVTTTQLIPALAKV-LLYGLGSSFPIENIYSATKIGK----ESCFERIQSRFGR-KVVYVVIGDGVEEEQAAKALN  444 (468)
T ss_pred             eeEEEEeccchhHHHHHH-HHHhcCCcccchhhhhhhhccH----HHHHHHHHHHhCC-ceEEEEecCcHHHHHHHHhhC
Confidence            334566665443333333 345666555  45777665553    4899999999997 556788999999999999999


Q ss_pred             CeEEEEcC
Q 024956          186 MEVVAVPS  193 (260)
Q Consensus       186 ~~~i~~~~  193 (260)
                      |++.-++.
T Consensus       445 ~PfwrI~~  452 (468)
T KOG3107|consen  445 MPFWRISS  452 (468)
T ss_pred             CceEeecc
Confidence            99888876

>PRK10444 UMP phosphatase; Provisional

Probab=95.54  E-value=0.16  Score=40.64  Aligned_cols=50  Identities=26%  Similarity=0.368  Sum_probs=37.1

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhhcCCccccceEEec
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~~gl~~~f~~i~~~  141 (260)
                      .+.|++.+++++|+++|++++++||+......   ..+ +..|+.---+.++++
T Consensus        17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l-~~~G~~~~~~~i~ts   69 (248)
T PRK10444         17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYTS   69 (248)
T ss_pred             eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHhhEecH
Confidence            35789999999999999999999999875443   344 556764334556554

>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]

Probab=95.49  E-value=0.078  Score=47.62  Aligned_cols=125  Identities=12%  Similarity=0.101  Sum_probs=70.5

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHH----------------------------HHHHhhcCCccccceEEe
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIE----------------------------SKISYQHGWNESFSVIVG  140 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~----------------------------~~l~~~~gl~~~f~~i~~  140 (260)
                      +-++.+++...|+.|+..|++++.+|+..-+...                            ..| +.+........++.
T Consensus       656 EDkLQ~dVk~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr~dah~eL-~~lR~k~~~aLvi~  734 (1051)
T KOG0210|consen  656 EDKLQDDVKPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSRGDAHNEL-NNLRRKTDCALVID  734 (1051)
T ss_pred             HHHHhhhhHhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCchHHHHHH-HHhhcCCCcEEEEc
Confidence            3467789999999999999999999977444321                            111 11111111112222


Q ss_pred             cccc-------------------------CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 024956          141 SDEV-------------------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP  195 (260)
Q Consensus       141 ~~~~-------------------------~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~  195 (260)
                      ++..                         ..+..++...+.+.++-+   ..+..|||+=||+.|...+.... ++.. .
T Consensus       735 G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~---krvc~IGDGGNDVsMIq~A~~Gi-GI~g-k  809 (1051)
T KOG0210|consen  735 GESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTG---KRVCAIGDGGNDVSMIQAADVGI-GIVG-K  809 (1051)
T ss_pred             CchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhC---ceEEEEcCCCccchheeecccce-eeec-c
Confidence            2100                         012223333333333333   68999999999999988876542 2222 1


Q ss_pred             Cccccccccchhcccccccccccc
Q 024956          196 KQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       196 ~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ...+..-+||+.+.-++-+.++++
T Consensus       810 EGkQASLAADfSItqF~Hv~rLLl  833 (1051)
T KOG0210|consen  810 EGKQASLAADFSITQFSHVSRLLL  833 (1051)
T ss_pred             cccccchhccccHHHHHHHHHHhh
Confidence            122334567887777766666654

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=95.23  E-value=0.097  Score=42.05  Aligned_cols=49  Identities=18%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEec
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      +.|++.+++++|+++|++++++||++...   ....+ +.+|+.--.+.++++
T Consensus        22 ~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l-~~~g~~~~~~~i~ts   73 (257)
T TIGR01458        22 AVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERL-QRLGFDISEDEVFTP   73 (257)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HHcCCCCCHHHeEcH
Confidence            67899999999999999999999986664   55556 667775434556554

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=94.91  E-value=0.21  Score=40.16  Aligned_cols=47  Identities=15%  Similarity=0.030  Sum_probs=35.7

Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC---CeEEEEcC
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG---MEVVAVPS  193 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G---~~~i~~~~  193 (260)
                      +..+..++..+++++.....-+++.||...|-.+++.+.   -.++-+..
T Consensus       180 ~~~KG~a~~~i~~~~~~~~~~~~~aGDD~TDE~~F~~v~~~~~~~v~v~~  229 (266)
T COG1877         180 GVSKGAAIKYIMDELPFDGRFPIFAGDDLTDEDAFAAVNKLDSITVKVGV  229 (266)
T ss_pred             CcchHHHHHHHHhcCCCCCCcceecCCCCccHHHHHhhccCCCceEEecC
Confidence            334778888899998777677999999999988888876   33444443

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=94.49  E-value=0.54  Score=37.23  Aligned_cols=87  Identities=21%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      ..++|++.+.++.++++|+++.++||+..   ......+.+.+|+.--.+.++++.         ......+++.. +.+
T Consensus        13 ~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~iits~---------~~~~~~l~~~~-~~~   82 (236)
T TIGR01460        13 HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQIITSG---------SVTKDLLRQRF-EGE   82 (236)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHeeeHH---------HHHHHHHHHhC-CCC
Confidence            45688999999999999999999997763   334445523367665566676653         33344444322 234


Q ss_pred             cEEEEecCHhhHHHHHHcCCe
Q 024956          167 SSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      .++.+|. ....+.++..|+.
T Consensus        83 ~v~v~G~-~~~~~~l~~~g~~  102 (236)
T TIGR01460        83 KVYVIGV-GELRESLEGLGFR  102 (236)
T ss_pred             EEEEECC-HHHHHHHHHcCCc
Confidence            5777875 3455566777754

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PLN02151 trehalose-phosphatase

Probab=93.96  E-value=0.11  Score=43.42  Aligned_cols=69  Identities=13%  Similarity=-0.088  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHcCCCCC---cEEEEecCHhhHHHHHHcCC----eEEEEcCCCCccccccccchhccccccccccccCCC
Q 024956          150 SPDIFLEAAKRLNMEPS---SSLVIEDSVIGVVAGKAAGM----EVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLP  222 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~---~~~~vGD~~~Dv~~a~~~G~----~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~  222 (260)
                      |..+++.+++.++..-.   -++|+||-.+|-.+++.+.-    -.|.+..+    .....|.+.+++..++..++..|.
T Consensus       270 KG~Av~~Ll~~~~~~~~~~~~pvyiGDD~TDEDaF~~L~~~~~G~gI~Vg~~----~k~T~A~y~L~dp~eV~~~L~~L~  345 (354)
T PLN02151        270 KGKALEFLLESLGYANCTDVFPIYIGDDRTDEDAFKILRDKKQGLGILVSKY----AKETNASYSLQEPDEVMEFLERLV  345 (354)
T ss_pred             HHHHHHHHHHhcccccCCCCeEEEEcCCCcHHHHHHHHhhcCCCccEEeccC----CCCCcceEeCCCHHHHHHHHHHHH
Confidence            34455556665553322   27999999998888776521    13444321    113467888888888887776544

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]

Probab=93.75  E-value=0.23  Score=45.74  Aligned_cols=100  Identities=12%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce---EEeccc-----------------cCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV---IVGSDE-----------------VRTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~---i~~~~~-----------------~~~~kp  149 (260)
                      -+..||+.+.++.+++.|+.+-.+|+.+-...++.. ..+|+..-=+.   +-+.+.                 ....-|
T Consensus       646 DPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA-~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP  724 (1034)
T KOG0204|consen  646 DPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIA-RECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSP  724 (1034)
T ss_pred             CCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHH-HHcccccCCCccceecchhhhhcCHHHHHhhhhhheeeecCCC
Confidence            367899999999999999999999999988887776 77776432111   111110                 011111


Q ss_pred             -ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          150 -SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       150 -~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                       +...+-+.+++   .-+-+++-||+.||-.+.+.|.+...+--.
T Consensus       725 ~DK~lLVk~L~~---~g~VVAVTGDGTNDaPALkeADVGlAMGIa  766 (1034)
T KOG0204|consen  725 NDKHLLVKGLIK---QGEVVAVTGDGTNDAPALKEADVGLAMGIA  766 (1034)
T ss_pred             chHHHHHHHHHh---cCcEEEEecCCCCCchhhhhcccchhcccc
Confidence             11222333332   234577889999999999999887665544

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=92.58  E-value=0.76  Score=41.17  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCcc--ccc--eEEeccc--------cCCCCCC---hHHHHH
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNE--SFS--VIVGSDE--------VRTGKPS---PDIFLE  156 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~--~f~--~i~~~~~--------~~~~kp~---~~~~~~  156 (260)
                      |+.++..+.+++||++..+|.+..-   ..+.+| +...-..  +-+  .+++.+.        +-..||.   -+++..
T Consensus       562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL-~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~D  640 (738)
T KOG2116|consen  562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYL-KNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTD  640 (738)
T ss_pred             hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHH-HHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHH
Confidence            6667777888888888888876432   234444 2111110  111  1222221        1123331   122333


Q ss_pred             HHHHcCCCCC-cEEEEecCHhhHHHHHHcCCe
Q 024956          157 AAKRLNMEPS-SSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       157 ~l~~l~~~~~-~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                      +...+.-+.+ -.+.||+..+|+-.=+.+|++
T Consensus       641 Ik~LF~p~~nPFYAgFGNR~TDviSY~~VgVP  672 (738)
T KOG2116|consen  641 IKNLFPPSGNPFYAGFGNRITDVISYRQVGVP  672 (738)
T ss_pred             HHHhcCCCCCceeeecCCCcccceeeeeecCC
Confidence            3333331111 256699999999999999986

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=92.55  E-value=2.4  Score=34.44  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH--hhcCCccc-cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS--YQHGWNES-FSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~--~~~gl~~~-f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ..-.+.||+.++++.|++.|.++.++||++....+...+  +.+|+... -+.++++         .......+++....
T Consensus        35 ~g~~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~v~e~~i~ss---------a~~~a~ylk~~~~~  105 (306)
T KOG2882|consen   35 LGEKPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNSVKEENIFSS---------AYAIADYLKKRKPF  105 (306)
T ss_pred             ecCCCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccccCcccccCh---------HHHHHHHHHHhCcC
Confidence            356789999999999999999999999998876555552  34555421 1222222         12333334333333


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .+.+..+|-.- =-+.++.+|+.......
T Consensus       106 ~k~Vyvig~~g-i~~eL~~aG~~~~g~~~  133 (306)
T KOG2882|consen  106 GKKVYVIGEEG-IREELDEAGFEYFGGGP  133 (306)
T ss_pred             CCeEEEecchh-hhHHHHHcCceeecCCC
Confidence            45666666443 23456777766555544

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=91.04  E-value=1.2  Score=37.02  Aligned_cols=88  Identities=16%  Similarity=0.205  Sum_probs=58.0

Q ss_pred             CCCCccHHHHHHHHHHC----CCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           90 VKALPGANRLIKHLSCH----GVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~----g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      -.+.|++.++++.|++.    |+++.++||+..   ......+.+.+|+.--.+.++.+.         .....+++..+
T Consensus        15 ~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~~~~~i~~s~---------~~~~~ll~~~~   85 (321)
T TIGR01456        15 KKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDVSPLQVIQSH---------SPYKSLVNKYE   85 (321)
T ss_pred             ccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCCCHHHHHhhh---------HHHHHHHHHcC
Confidence            45689999999999998    999999999873   332233325667653334444432         23455555542


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                         ..++++|.+- -...++..|+..+.
T Consensus        86 ---~~v~viG~~~-~~~~l~~~G~~~vv  109 (321)
T TIGR01456        86 ---KRILAVGTGS-VRGVAEGYGFQNVV  109 (321)
T ss_pred             ---CceEEEeChH-HHHHHHHcCCcccc
Confidence               2688888764 56777789987653

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=90.70  E-value=0.76  Score=37.58  Aligned_cols=63  Identities=14%  Similarity=0.115  Sum_probs=32.6

Q ss_pred             EEEEecCCccccCHHHHHH---HHHHHHHHcCC-CCChhhhhhccCCCHHHHHHHHHHHhCCCCCHH
Q 024956           11 CVILDLDGTLLNTDGMFSE---VLKTFLVKYGK-EWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKH   73 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   73 (260)
                      +++||+||+|+.....+..   +++.+.+..|. .++-.-...--|.....-.+.+.+.++.+-+..
T Consensus        37 gfafDIDGVL~RG~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~d  103 (389)
T KOG1618|consen   37 GFAFDIDGVLFRGHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSAD  103 (389)
T ss_pred             eEEEecccEEEecCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHH
Confidence            6899999999976544432   33333333221 111122223334444455566666666664443

>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]

Probab=90.60  E-value=0.93  Score=41.96  Aligned_cols=36  Identities=14%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI  125 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l  125 (260)
                      -++.|++++.+++|.+.+++++.+|+.++-..-...
T Consensus       674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVa  709 (1160)
T KOG0209|consen  674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVA  709 (1160)
T ss_pred             CCCCccHHHHHHHHhccCceEEEEeCCCccchheeh
Confidence            467899999999999999999999998775544333

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=90.29  E-value=6.2  Score=31.26  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             CCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .+.|+..++++..+..   |+.+.-+++.+....++.. + .|.....-  ..+++.   .+..+++.++.+.+..+++ 
T Consensus       104 ~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~-~-~G~~~vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~vp-  177 (248)
T cd04728         104 TLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE-D-AGCAAVMPLGSPIGSG---QGLLNPYNLRIIIERADVP-  177 (248)
T ss_pred             ccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-H-cCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhCCCc-
Confidence            4578888888877766   9988878888888776544 3 45443322  333332   3444578889888775443 


Q ss_pred             CcEEEEecC---HhhHHHHHHcCCeEEEEcCC
Q 024956          166 SSSLVIEDS---VIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       166 ~~~~~vGD~---~~Dv~~a~~~G~~~i~~~~~  194 (260)
                         ++++-+   +.|+..+...|...+++++.
T Consensus       178 ---VI~egGI~tpeda~~AmelGAdgVlV~SA  206 (248)
T cd04728         178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTA  206 (248)
T ss_pred             ---EEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence               666654   47999999999999999983

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=89.75  E-value=0.67  Score=37.51  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES  134 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~  134 (260)
                      +.+.++|++|+++|++++++|++....+...+ +.+++..+
T Consensus        24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~-~~l~l~~~   63 (273)
T PRK00192         24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLR-KELGLEDP   63 (273)
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCCC
Confidence            45678999999999999999999999888888 77787643

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=89.69  E-value=1  Score=36.29  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=32.4

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      +...+.|++++++|+++++.|+++...+...+ +.+++.
T Consensus        23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~   60 (270)
T PRK10513         23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYL-KELHME   60 (270)
T ss_pred             HHHHHHHHHHHHCCCEEEEecCCChHHHHHHH-HHhCCC
Confidence            44568999999999999999999999888877 667764

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=89.52  E-value=0.93  Score=33.87  Aligned_cols=17  Identities=35%  Similarity=0.388  Sum_probs=14.8

Q ss_pred             ccccEEEEecCCccccC
Q 024956            7 KLMSCVILDLDGTLLNT   23 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~   23 (260)
                      ..+++|++|+||||+..
T Consensus        23 ~~v~~vv~D~Dgtl~~~   39 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYP   39 (170)
T ss_pred             CCCCEEEEecCCccccC
Confidence            46799999999999965

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=89.51  E-value=5.4  Score=38.61  Aligned_cols=72  Identities=7%  Similarity=-0.018  Sum_probs=49.2

Q ss_pred             HhHHHHHHhhcCCccccceEEecc-----ccCCCCCChHHHHHHHHHcCCCCCcE-EEEecCHh-hHHHHHHcCCeEEEE
Q 024956          119 ATIESKISYQHGWNESFSVIVGSD-----EVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVI-GVVAGKAAGMEVVAV  191 (260)
Q Consensus       119 ~~~~~~l~~~~gl~~~f~~i~~~~-----~~~~~kp~~~~~~~~l~~l~~~~~~~-~~vGD~~~-Dv~~a~~~G~~~i~~  191 (260)
                      ..++..| +..++..  ..+++.+     ..+..-.+..+++++..++|++.+++ +|+||+-| |.+.+..--..+|.+
T Consensus       924 ~elr~~L-r~~gLr~--~~iys~~~~~LDVlP~~ASKgqAlRyL~~rwgi~l~~v~VfaGdSGntD~e~Ll~G~~~tvi~ 1000 (1050)
T TIGR02468       924 KELRKLL-RIQGLRC--HAVYCRNGTRLNVIPLLASRSQALRYLFVRWGIELANMAVFVGESGDTDYEGLLGGLHKTVIL 1000 (1050)
T ss_pred             HHHHHHH-HhCCCce--EEEeecCCcEeeeeeCCCCHHHHHHHHHHHcCCChHHeEEEeccCCCCCHHHHhCCceeEEEE
Confidence            3456666 6666654  3444432     34556667899999999999999999 55999999 977664333345544


Q ss_pred             cC
Q 024956          192 PS  193 (260)
Q Consensus       192 ~~  193 (260)
                      ..
T Consensus      1001 ~g 1002 (1050)
T TIGR02468      1001 KG 1002 (1050)
T ss_pred             ec
Confidence            43

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=89.51  E-value=0.8  Score=38.68  Aligned_cols=100  Identities=17%  Similarity=0.185  Sum_probs=70.7

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--CCccccceEEecc-----------------------------
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--GWNESFSVIVGSD-----------------------------  142 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--gl~~~f~~i~~~~-----------------------------  142 (260)
                      +....++..+++.|.++.++||.............+  ++..+|+.++...                             
T Consensus       201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~~~  280 (424)
T KOG2469|consen  201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWETYFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDNTG  280 (424)
T ss_pred             CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcceeEEEEEEeccCCccccccceeeeeccccccccccccCC
Confidence            444459999999999999999998877665554444  4677888765531                             


Q ss_pred             -ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHH-HHHHcCCeEEEEcC
Q 024956          143 -EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVV-AGKAAGMEVVAVPS  193 (260)
Q Consensus       143 -~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~-~a~~~G~~~i~~~~  193 (260)
                       ....+.+++.....+++.++....+++|+||+. .||. .-+.-|+.++++..
T Consensus       281 p~e~~~~ySggs~~~~~~~l~~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p  334 (424)
T KOG2469|consen  281 PLEQGGVYSGGSLKTVETSMKVKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP  334 (424)
T ss_pred             cchhcccCCcchHHHHHHHhcccccceeecccceeeeEEecceecceEEEEEeh
Confidence             001233445667778888888889999999999 5654 34567777777754

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=89.13  E-value=0.93  Score=35.60  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=33.3

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      +...++|++++++|++++++|+++...+...+ +.+|+..
T Consensus        18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~-~~lg~~~   56 (225)
T TIGR02461        18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYR-EELGVEP   56 (225)
T ss_pred             hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCC
Confidence            45688999999999999999999999888777 7778643

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=88.65  E-value=8.6  Score=30.21  Aligned_cols=88  Identities=15%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             HHHHHHC-CCcEEEEeCCCh---HhHHHHHHhh-cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956          100 IKHLSCH-GVPMALASNSHR---ATIESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS  174 (260)
Q Consensus       100 l~~l~~~-g~~i~i~s~~~~---~~~~~~l~~~-~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~  174 (260)
                      |++..++ ++.+.+++.+..   +.+....... -.+.+-|-.+++.+   ..-|.|..-++.++..|++   ++.|||.
T Consensus        23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN---~a~PGP~~ARE~l~~~~iP---~IvI~D~   96 (277)
T PRK00994         23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPN---PAAPGPKKAREILKAAGIP---CIVIGDA   96 (277)
T ss_pred             HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCC---CCCCCchHHHHHHHhcCCC---EEEEcCC
Confidence            3444444 788888887743   3333333111 13443333333332   2457778889999999986   9999999


Q ss_pred             H--hhHHHHHHcCCeEEEEcC
Q 024956          175 V--IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       175 ~--~Dv~~a~~~G~~~i~~~~  193 (260)
                      +  .+....+..|+.+|.+..
T Consensus        97 p~~K~~d~l~~~g~GYIivk~  117 (277)
T PRK00994         97 PGKKVKDAMEEQGLGYIIVKA  117 (277)
T ss_pred             CccchHHHHHhcCCcEEEEec
Confidence            9  477899999999998876

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=88.61  E-value=7.8  Score=30.49  Aligned_cols=95  Identities=14%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             CCCccHHHHH---HHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc-ccCCCCCChHHHHHHHHHcCCCCC
Q 024956           91 KALPGANRLI---KHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        91 ~~~~~~~~~l---~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~-~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .++|+..+++   +.|.+.|+.+.-+++.+....+ .| ...|.....  ..++. ..+.+-.++..++.++++.+++  
T Consensus       104 ~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~ak-rL-~d~GcaavM--PlgsPIGSg~Gi~n~~~l~~i~~~~~vP--  177 (247)
T PF05690_consen  104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RL-EDAGCAAVM--PLGSPIGSGRGIQNPYNLRIIIERADVP--  177 (247)
T ss_dssp             T--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHH-HH-HHTT-SEBE--EBSSSTTT---SSTHHHHHHHHHHGSSS--
T ss_pred             CcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHCCCCEEE--ecccccccCcCCCCHHHHHHHHHhcCCc--
Confidence            4567777766   5566899999999998888776 44 345543221  11111 2245667889999999999886  


Q ss_pred             cEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956          167 SSLVIEDSV---IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       167 ~~~~vGD~~---~Dv~~a~~~G~~~i~~~~  193 (260)
                        +.|+-+.   +|...|-++|+..|++|+
T Consensus       178 --vIvDAGiG~pSdaa~AMElG~daVLvNT  205 (247)
T PF05690_consen  178 --VIVDAGIGTPSDAAQAMELGADAVLVNT  205 (247)
T ss_dssp             --BEEES---SHHHHHHHHHTT-SEEEESH
T ss_pred             --EEEeCCCCCHHHHHHHHHcCCceeehhh
Confidence              6666655   799999999999999997

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=88.54  E-value=7.3  Score=32.29  Aligned_cols=96  Identities=11%  Similarity=0.124  Sum_probs=68.3

Q ss_pred             CCCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccc--cceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           90 VKALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNES--FSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~--f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ..+.|+..+++++.+..   |+.+.++++.+....++.. + +|...+  +...+++   +.+-.+|+.++.+++...+ 
T Consensus       177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~-~-~g~~avmPl~~pIGs---g~gv~~p~~i~~~~e~~~v-  250 (326)
T PRK11840        177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLE-D-AGAVAVMPLGAPIGS---GLGIQNPYTIRLIVEGATV-  250 (326)
T ss_pred             CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-h-cCCEEEeeccccccC---CCCCCCHHHHHHHHHcCCC-
Confidence            34567888888777766   9999899988888776544 3 344211  1222332   3344588999999999554 


Q ss_pred             CCcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956          165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       165 ~~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~  194 (260)
                         -+.+|-+.   .|+..|-.+|...++++++
T Consensus       251 ---pVivdAGIg~~sda~~AmelGadgVL~nSa  280 (326)
T PRK11840        251 ---PVLVDAGVGTASDAAVAMELGCDGVLMNTA  280 (326)
T ss_pred             ---cEEEeCCCCCHHHHHHHHHcCCCEEEEcce
Confidence               37777765   6999999999999999984

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=88.40  E-value=0.9  Score=35.26  Aligned_cols=40  Identities=15%  Similarity=0.153  Sum_probs=33.4

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      +.+...+.|++|+++|++++++|+++...+...+ +.+++.
T Consensus        19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~-~~l~~~   58 (215)
T TIGR01487        19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALA-VLIGTS   58 (215)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHH-HHhCCC
Confidence            3456678999999999999999999999888777 777765

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=88.23  E-value=3  Score=32.13  Aligned_cols=48  Identities=23%  Similarity=0.407  Sum_probs=34.3

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEe
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVG  140 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~  140 (260)
                      ..|++.+.++.|++++.++-++||...+.   ..+.| .++|+.-.-+.|++
T Consensus        24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL-~rlgf~v~eeei~t   74 (262)
T KOG3040|consen   24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERL-QRLGFDVSEEEIFT   74 (262)
T ss_pred             cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHH-HHhCCCccHHHhcC
Confidence            67899999999998889999999987654   33444 55665433334444

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=88.02  E-value=1.1  Score=34.88  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           96 ANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        96 ~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      ..++|++++++|++++++|+++...+...+ +.+++.
T Consensus        21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~-~~l~~~   56 (221)
T TIGR02463        21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ-KALGLT   56 (221)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence            568999999999999999999999998888 777765

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=87.91  E-value=12  Score=29.83  Aligned_cols=95  Identities=12%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             CCCccHHHHHHHHHHC---CCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           91 KALPGANRLIKHLSCH---GVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~---g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .+.|+..+++++.+..   |+.+.-+++.+....++..  .+|.....-  ..+++.   .+..+++.++.+.+..+++ 
T Consensus       104 ~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~--~~G~~~vmPlg~pIGsg---~gi~~~~~i~~i~e~~~vp-  177 (250)
T PRK00208        104 TLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE--EAGCAAVMPLGAPIGSG---LGLLNPYNLRIIIEQADVP-  177 (250)
T ss_pred             CCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH--HcCCCEeCCCCcCCCCC---CCCCCHHHHHHHHHhcCCe-
Confidence            3467888888777766   9988878888888776444  345443322  334432   3444578888888875543 


Q ss_pred             CcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956          166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       166 ~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~  194 (260)
                         +.++-+.   .|+..+-..|...+++++.
T Consensus       178 ---VIveaGI~tpeda~~AmelGAdgVlV~SA  206 (250)
T PRK00208        178 ---VIVDAGIGTPSDAAQAMELGADAVLLNTA  206 (250)
T ss_pred             ---EEEeCCCCCHHHHHHHHHcCCCEEEEChH
Confidence               6666554   7999999999999999983

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=87.76  E-value=1.1  Score=35.11  Aligned_cols=40  Identities=18%  Similarity=0.116  Sum_probs=33.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .|...+.|++++++|++++++|+++...+...+ ..+++..
T Consensus        22 ~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   61 (230)
T PRK01158         22 SLKAVEAIRKAEKLGIPVILATGNVLCFARAAA-KLIGTSG   61 (230)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCCC
Confidence            345678899999999999999999999888777 7777653

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=86.88  E-value=1.3  Score=35.85  Aligned_cols=40  Identities=8%  Similarity=0.090  Sum_probs=33.6

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .+...+.|++++++|+++++.|+++...+...+ +.+++..
T Consensus        21 ~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   60 (272)
T PRK15126         21 GEKTLSTLARLRERDITLTFATGRHVLEMQHIL-GALSLDA   60 (272)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCCC
Confidence            445578999999999999999999999888887 7777753

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=86.86  E-value=13  Score=29.67  Aligned_cols=95  Identities=13%  Similarity=0.122  Sum_probs=68.3

Q ss_pred             CCCccHHHHHH---HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           91 KALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        91 ~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .+.|+..++++   .|-+.|+.+.-+++.+....+ .| +..|.....-  .-++   .+.+-.++..++.+++...++ 
T Consensus       118 ~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rL-ed~Gc~aVMPlgsPIG---Sg~Gl~n~~~l~~i~e~~~vp-  191 (267)
T CHL00162        118 YLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HL-EDIGCATVMPLGSPIG---SGQGLQNLLNLQIIIENAKIP-  191 (267)
T ss_pred             ccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HH-HHcCCeEEeeccCccc---CCCCCCCHHHHHHHHHcCCCc-
Confidence            45677777664   566789999999999888776 44 4455432211  1122   245667889999999987765 


Q ss_pred             CcEEEEecCH---hhHHHHHHcCCeEEEEcCC
Q 024956          166 SSSLVIEDSV---IGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       166 ~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~~  194 (260)
                         +.+|-+.   +|+..|-.+|...++++++
T Consensus       192 ---VivdAGIgt~sDa~~AmElGaDgVL~nSa  220 (267)
T CHL00162        192 ---VIIDAGIGTPSEASQAMELGASGVLLNTA  220 (267)
T ss_pred             ---EEEeCCcCCHHHHHHHHHcCCCEEeecce
Confidence               6777655   7999999999999999984

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=86.73  E-value=1.5  Score=35.07  Aligned_cols=39  Identities=15%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      .+...+.|++++++|++++++|+++...+...+ +.+++.
T Consensus        18 ~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~-~~~~~~   56 (256)
T TIGR00099        18 SPSTKEALAKLREKGIKVVLATGRPYKEVKNIL-KELGLD   56 (256)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHcCCC
Confidence            345678999999999999999999998888777 767765

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>PTZ00445 p36-lilke protein; Provisional

Probab=86.19  E-value=1.5  Score=33.86  Aligned_cols=16  Identities=19%  Similarity=0.235  Sum_probs=14.5

Q ss_pred             ccccEEEEecCCcccc
Q 024956            7 KLMSCVILDLDGTLLN   22 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d   22 (260)
                      ..+|+|++|+|.||+.
T Consensus        41 ~GIk~Va~D~DnTlI~   56 (219)
T PTZ00445         41 CGIKVIASDFDLTMIT   56 (219)
T ss_pred             cCCeEEEecchhhhhh
Confidence            3689999999999997

>PRK10976 putative hydrolase; Provisional

Probab=86.04  E-value=1.5  Score=35.28  Aligned_cols=40  Identities=18%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .+...+.|++++++|+++++.|++....+...+ +.+++..
T Consensus        21 s~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   60 (266)
T PRK10976         21 SPYAKETLKLLTARGIHFVFATGRHHVDVGQIR-DNLEIKS   60 (266)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence            344578999999999999999999999888777 7777653

>TIGR00685 T6PP trehalose-phosphatase

Probab=85.86  E-value=0.43  Score=37.97  Aligned_cols=15  Identities=33%  Similarity=0.505  Sum_probs=12.7

Q ss_pred             ccEEEEecCCccccC
Q 024956            9 MSCVILDLDGTLLNT   23 (260)
Q Consensus         9 ~k~vifD~DGTL~d~   23 (260)
                      ..+++||+||||.+.
T Consensus         3 ~~~l~lD~DGTL~~~   17 (244)
T TIGR00685         3 KRAFFFDYDGTLSEI   17 (244)
T ss_pred             cEEEEEecCccccCC
Confidence            468999999999963

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=85.75  E-value=2.7  Score=38.05  Aligned_cols=78  Identities=19%  Similarity=0.109  Sum_probs=54.2

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-ccc-ceEEeccccCCCCCChHHHHHHHHHcCCCC-
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEP-  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f-~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~-  165 (260)
                      .+++.|++.++|+++.+. +.+.|+|-+.+.++...+ +...-. .+| +.|++.+..+..|.        +......| 
T Consensus       199 ~vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~-~liDP~~~lF~dRIisrde~~~~kt--------~dL~~~~p~  268 (635)
T KOG0323|consen  199 LVKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIA-KLIDPEGKYFGDRIISRDESPFFKT--------LDLVLLFPC  268 (635)
T ss_pred             EEEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHH-HHhCCCCccccceEEEecCCCcccc--------cccccCCCC
Confidence            478899999999999988 999999999999988777 443322 344 56777776443332        22222233 


Q ss_pred             --CcEEEEecCHh
Q 024956          166 --SSSLVIEDSVI  176 (260)
Q Consensus       166 --~~~~~vGD~~~  176 (260)
                        +.++.|+|+.+
T Consensus       269 g~smvvIIDDr~d  281 (635)
T KOG0323|consen  269 GDSMVVIIDDRSD  281 (635)
T ss_pred             CCccEEEEeCccc
Confidence              34888888774

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=85.73  E-value=1.7  Score=41.44  Aligned_cols=36  Identities=14%  Similarity=0.334  Sum_probs=28.7

Q ss_pred             CCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHH
Q 024956           90 VKALPGANRLIKHLSCH-GVPMALASNSHRATIESKI  125 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l  125 (260)
                      ..+.|++.++|+.|.+. +..++|+|+.+...++..+
T Consensus       621 a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~f  657 (934)
T PLN03064        621 LRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENF  657 (934)
T ss_pred             cCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHh
Confidence            34667888899998875 5689999999998887766

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=85.44  E-value=1.8  Score=34.85  Aligned_cols=40  Identities=13%  Similarity=0.189  Sum_probs=33.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .|...+.|++++++|+.+++.|++....+...+ +.+++..
T Consensus        22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   61 (272)
T PRK10530         22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFY-QALALDT   61 (272)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHH-HhcCCCC
Confidence            345578999999999999999999999888777 7777653

>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]

Probab=85.29  E-value=6.3  Score=27.71  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=55.5

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh-HHHHHHhhcCCccccceE-----EeccccCCCCCChHHHHHHHHHcC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVI-----VGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i-----~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      +...++.+...|..|++.|+.++++|++.... ....| +.+.+..-+-.-     +.....+ ...+-..|..+-...+
T Consensus        42 e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L-~~fkvk~~Gvlkps~e~ft~~~~g-~gsklghfke~~n~s~  119 (144)
T KOG4549|consen   42 EMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGL-ETFKVKQTGVLKPSLEEFTFEAVG-DGSKLGHFKEFTNNSN  119 (144)
T ss_pred             eeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHH-HHhccCcccccchhhhcCceeeec-CcccchhHHHHhhccC
Confidence            46688999999999999999999999987655 44555 655543211111     1111111 1223355666777777


Q ss_pred             CCCCcEEEEecCHh
Q 024956          163 MEPSSSLVIEDSVI  176 (260)
Q Consensus       163 ~~~~~~~~vGD~~~  176 (260)
                      ....+..+++|-..
T Consensus       120 ~~~k~~~~fdDesr  133 (144)
T KOG4549|consen  120 SIEKNKQVFDDESR  133 (144)
T ss_pred             cchhceeeeccccc
Confidence            77788888888763

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=85.25  E-value=1.7  Score=33.79  Aligned_cols=39  Identities=15%  Similarity=0.133  Sum_probs=31.7

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      .+...+.|++++++|++++++|+++...+...+ +.+++.
T Consensus        17 ~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~-~~l~~~   55 (225)
T TIGR01482        17 NESALEAIRKAESVGIPVVLVTGNSVQFARALA-KLIGTP   55 (225)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH-HHhCCC
Confidence            344567889999999999999999999888777 667643

catalyze the same reaction as SPP.

>PLN02151 trehalose-phosphatase

Probab=85.14  E-value=0.47  Score=39.79  Aligned_cols=13  Identities=46%  Similarity=0.621  Sum_probs=11.0

Q ss_pred             ccEEEEecCCccc
Q 024956            9 MSCVILDLDGTLL   21 (260)
Q Consensus         9 ~k~vifD~DGTL~   21 (260)
                      -.+|++|+||||.
T Consensus        98 ~~ll~lDyDGTL~  110 (354)
T PLN02151         98 QIVMFLDYDGTLS  110 (354)
T ss_pred             ceEEEEecCccCC
Confidence            3578889999999

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=84.73  E-value=2.2  Score=34.13  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      ...+.+++|+++|++++++|++....+...+ +.+++.
T Consensus        20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~-~~~~~~   56 (256)
T TIGR01486        20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLR-KELGLE   56 (256)
T ss_pred             HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence            3568899999999999999999999988888 777764

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=84.70  E-value=2.2  Score=34.83  Aligned_cols=40  Identities=23%  Similarity=0.246  Sum_probs=34.0

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .+.+.+.|++|+++|+++++.|+.....+.... +.+++..
T Consensus        20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~-~~Lgl~~   59 (302)
T PRK12702         20 YGAARQALAALERRSIPLVLYSLRTRAQLEHLC-RQLRLEH   59 (302)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence            445678999999999999999999999888777 7777754

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=83.66  E-value=2.2  Score=33.53  Aligned_cols=40  Identities=18%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      +.+...+.|++|+++|+++++.|++....+...+ ..+++.
T Consensus        16 i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~-~~~~~~   55 (254)
T PF08282_consen   16 ISPETIEALKELQEKGIKLVIATGRSYSSIKRLL-KELGID   55 (254)
T ss_dssp             SCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH-HHTTHC
T ss_pred             eCHHHHHHHHhhcccceEEEEEccCccccccccc-ccccch
Confidence            4467788999999999999999999999998888 677765

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=83.55  E-value=1.9  Score=34.02  Aligned_cols=64  Identities=20%  Similarity=0.105  Sum_probs=31.7

Q ss_pred             CCCCChHHHHHHHHHcCCC---CCcEEEEecCHhhHHHHHHcCCe-----EEEEcCCCCccccccccchhccc
Q 024956          146 TGKPSPDIFLEAAKRLNME---PSSSLVIEDSVIGVVAGKAAGME-----VVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~---~~~~~~vGD~~~Dv~~a~~~G~~-----~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                      ....|..+++.++++++..   +.-++|+||...|..+.+.+.-.     .+.+.... .......|.+.+++
T Consensus       162 ~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~-~~~~~t~A~y~l~~  233 (235)
T PF02358_consen  162 PGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVS-VGEKPTAASYRLDD  233 (235)
T ss_dssp             TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES------------------
T ss_pred             CCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeec-cccccccccccccc
Confidence            3444778999999998875   77899999999999999887653     44454421 12223455555544

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed

Probab=83.37  E-value=0.44  Score=39.30  Aligned_cols=24  Identities=46%  Similarity=0.846  Sum_probs=21.9

Q ss_pred             CCccccccccccccCCccccCCCCC
Q 024956          235 EPWYIGGPVVKGLGRGSKVLGIPTG  259 (260)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~  259 (260)
                      .|+-+.|.+.+|.|+| +.+|.|||
T Consensus       184 ~~y~~~g~V~~G~~~G-r~lgfPTa  207 (305)
T PRK05627        184 RPYSISGRVVHGQKLG-RTLGFPTA  207 (305)
T ss_pred             CCCceEEEEEECcccC-ccccceeE
Confidence            6788999999999999 66999997

>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]

Probab=83.07  E-value=0.2  Score=46.03  Aligned_cols=102  Identities=15%  Similarity=0.088  Sum_probs=61.8

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc---------------ccceEEecc-----ccCCCC--
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE---------------SFSVIVGSD-----EVRTGK--  148 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~---------------~f~~i~~~~-----~~~~~k--  148 (260)
                      ++...+.+.+..+++.|++++.+|+..+...++.. ..-|+..               -.+.+.+.+     ..+..+  
T Consensus       590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA-~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~  668 (1019)
T KOG0203|consen  590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPD  668 (1019)
T ss_pred             CCcccCchhhhhhhhhCceEEEEecCccchhhhhh-hheeeecCCchhhhhhHHhcCCcccccCccccceEEEecccccc
Confidence            55667889999999999999999998776665544 4444211               011111110     011111  


Q ss_pred             CChHHHHHHHHHcC------CCC--------------CcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          149 PSPDIFLEAAKRLN------MEP--------------SSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       149 p~~~~~~~~l~~l~------~~~--------------~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      -.++-+.++++...      .+|              +-+.+.||+.||-.+.+.+.+..++--.
T Consensus       669 ~~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGia  733 (1019)
T KOG0203|consen  669 MSSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIA  733 (1019)
T ss_pred             cCHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccc
Confidence            12344555554432      122              2367789999999999999988777433

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=82.96  E-value=21  Score=28.09  Aligned_cols=95  Identities=13%  Similarity=0.205  Sum_probs=68.1

Q ss_pred             CCCCccHHHHHH---HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           90 VKALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        90 ~~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      -.+.|+..++++   .|-+.|+.+.-+|+.+....++ | +..|......  .-+++   +.+--++..++.++++..++
T Consensus       110 ~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arr-L-ee~GcaavMPl~aPIGS---g~G~~n~~~l~iiie~a~VP  184 (262)
T COG2022         110 KTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARR-L-EEAGCAAVMPLGAPIGS---GLGLQNPYNLEIIIEEADVP  184 (262)
T ss_pred             cccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHH-H-HhcCceEeccccccccC---CcCcCCHHHHHHHHHhCCCC
Confidence            346677777775   5567899999999988887764 4 3345432221  12222   34556789999999999886


Q ss_pred             CCcEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956          165 PSSSLVIEDSV---IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       165 ~~~~~~vGD~~---~Dv~~a~~~G~~~i~~~~  193 (260)
                          +.|+-+.   +|...+-+.|+..|++|+
T Consensus       185 ----viVDAGiG~pSdAa~aMElG~DaVL~NT  212 (262)
T COG2022         185 ----VIVDAGIGTPSDAAQAMELGADAVLLNT  212 (262)
T ss_pred             ----EEEeCCCCChhHHHHHHhcccceeehhh
Confidence                6666554   799999999999999998

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=82.87  E-value=2.4  Score=33.97  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=34.6

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      ..+...+.|++++++|++++++|+++...+...+ +.+++..
T Consensus        21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~-~~l~~~~   61 (264)
T COG0561          21 ISPETKEALARLREKGVKVVLATGRPLPDVLSIL-EELGLDG   61 (264)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHH-HHcCCCc
Confidence            3445678999999999999999999999888888 7788764

>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function

Probab=82.79  E-value=0.96  Score=27.33  Aligned_cols=25  Identities=8%  Similarity=0.177  Sum_probs=16.2

Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHH
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGK  182 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~  182 (260)
                      ++++++++|+    ++|+||...|++++.
T Consensus         7 VqQLLK~fG~----~IY~gdr~~DielM~   31 (62)
T PF06014_consen    7 VQQLLKKFGI----IIYVGDRLWDIELME   31 (62)
T ss_dssp             HHHHHHTTS---------S-HHHHHHHHH
T ss_pred             HHHHHHHCCE----EEEeCChHHHHHHHH
Confidence            5778898887    699999999999865

; PDB: 2NN4_A.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=82.06  E-value=2.7  Score=33.94  Aligned_cols=38  Identities=21%  Similarity=0.188  Sum_probs=32.6

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      +...+.|++++++|+++++.|+++...+...+ +.+++.
T Consensus        27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~-~~l~~~   64 (271)
T PRK03669         27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQ-QTLGLQ   64 (271)
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHhCCC
Confidence            34567899999999999999999999998888 777774

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=81.13  E-value=1.2  Score=33.82  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=17.5

Q ss_pred             EEEEecCCccccCHHHHHHHHHHHHHH
Q 024956           11 CVILDLDGTLLNTDGMFSEVLKTFLVK   37 (260)
Q Consensus        11 ~vifD~DGTL~d~~~~~~~~~~~~~~~   37 (260)
                      +++||.||||..........+.+.+.+
T Consensus        13 l~lfdvdgtLt~~r~~~~~e~~~~l~~   39 (252)
T KOG3189|consen   13 LCLFDVDGTLTPPRQKVTPEMLEFLQK   39 (252)
T ss_pred             EEEEecCCccccccccCCHHHHHHHHH
Confidence            678999999997644444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
3l5k_A	250	The Crystal Structure Of Human Haloacid Dehalogenas		3e-31
3e58_A	214	Crystal Structure Of Putative Beta-Phosphoglucomuta		4e-11
3nas_A	233	The Crystal Structure Of Beta-Phosphoglucomutase Fr		1e-10
3kbb_A	216	Crystal Structure Of Putative Beta-Phosphoglucomuta		3e-10
4ex6_A	237	Crystal Structure Of The Alnumycin P Phosphatase Al		4e-09
1te2_A	226	Putative Phosphatase Ynic From Escherichia Coli K12		8e-09
4eek_A	259	Crystal Structure Of Had Family Hydrolase Dr_1622 F		4e-08
4gib_A	250	2.27 Angstrom Crystal Structure Of Beta-Phosphogluc		6e-08
3dv9_A	247	Putative Beta-Phosphoglucomutase From Bacteroides V		8e-08
3fm9_A	221	Analysis Of The Structural Determinants Underlying		2e-07
3qub_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		2e-07
1lvh_A	221	The Structure Of Phosphorylated Beta-phosphoglucomu		2e-07
1o03_A	221	Structure Of Pentavalent Phosphorous Intermediate O		3e-07
3qu5_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		4e-07
3qut_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		4e-07
3qu4_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		4e-07
3quq_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		4e-07
3qyp_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		5e-07
3r9k_A	243	Crystal Structure Of Pyrophosphatase From Bacteroid		5e-07
3d6j_A	225	Crystal Structure Of Putative Haloacid Dehalogenase		7e-07
4g9b_A	243	Crystal Structure Of Beta-Phosphoglucomutase Homolo		1e-06
2fdr_A	229	Crystal Structure Of Conserved Haloacid Dehalogenas		8e-06
3kzx_A	231	Crystal Structure Of A Had-Superfamily Hydrolase Fr		3e-05
2yy6_A	213	Crystal Structure Of The Phosphoglycolate Phosphata		8e-05
2nyv_A	222	X-Ray Crystal Structure Of A Phosphoglycolate Phosp		2e-04
3s6j_A	233	The Crystal Structure Of A Hydrolase From Pseudomon		3e-04
2hdo_A	209	Crystal Structure Of Putative Phosphoglycolate Phos		3e-04

>pdb|3L5K|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like Hydrolase Domain Containing 1a (Hdhd1a) Length = 250

Iteration: 1
 Score =  132 bits (331), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 4/204 (1%)
Query: 26  MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD 85
           ++S V +    +Y K++    K  ++GK  LE A II++   LP +K E V E  +   +
Sbjct: 47  LYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLKE 106
Query: 86  HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS-VIVGSD-E 143
                  +PGA +LI HL  HG+P ALA++S  A+ + K S    +   FS +++G D E
Sbjct: 107 VFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPE 166
Query: 144 VRTGKPSPDIFLEAAKRLNMEPS--SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY 201
           V+ GKP PDIFL  AKR +  P+    LV ED+  GV A  AAGM+VV VP         
Sbjct: 167 VQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLT 226
Query: 202 TAADEVINSLLDLRPEKWGLPPFQ 225
           T A  V+NSL D +PE +GLP ++
Sbjct: 227 TKATLVLNSLQDFQPELFGLPSYE 250

>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Streptococcus Thermophilus Length = 214

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 93  LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 152
            P   +++  +   G+ + LAS+S +A I   +  ++     F +++  +E +  KP+P+
Sbjct: 91  FPDVLKVLNEVKSQGLEIGLASSSVKADIFRALE-ENRLQGFFDIVLSGEEFKESKPNPE 149
Query: 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL 212
           I+L A K+LN++ S +L+IEDS  G+ AG AA +EV A+        + +AA  +++SL 
Sbjct: 150 IYLTALKQLNVQASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGXDQ-SAAKGLLDSLT 208
Query: 213 DL 214
           D+
Sbjct: 209 DV 210

>pdb|3NAS|A Chain A, The Crystal Structure Of Beta-Phosphoglucomutase From Bacillus Subtilis Length = 233

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 62/141 (43%), Gaps = 7/141 (4%)
Query: 77  NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
           N  Y      L     LPG  RL+  L    + + LAS+S  A    KI  +    + F 
Sbjct: 78  NRDYQXLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNA---PKILRRLAIIDDFH 134
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK 196
            IV    +  GKP PDIFL AA  L++ P+    IED+  G+ A K+AG   V V     
Sbjct: 135 AIVDPTTLAKGKPDPDIFLTAAAXLDVSPADCAAIEDAEAGISAIKSAGXFAVGV----G 190
Query: 197 QTHRYTAADEVINSLLDLRPE 217
           Q      AD V+    DL  E
Sbjct: 191 QGQPXLGADLVVRQTSDLTLE 211

>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From Thermotoga Maritima Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 80/169 (47%), Gaps = 10/169 (5%)
Query: 26  MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS---- 81
           ++ E  +     YGK +      +I G    E   I+ E   +  +   F   V+     
Sbjct: 18  LYFEAYRRVAESYGKPYTEDLHRRIXGVPEREGLPILXEALEIKDSLENFKKRVHEEKKR 77
Query: 82  MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNS-HRATIESKISYQHGWNESFSVIVG 140
           +FS+ L   K  PG    ++ +    + +ALA+++  R  +E     +    + F V V 
Sbjct: 78  VFSELL---KENPGVREALEFVKSKRIKLALATSTPQREALER--LRRLDLEKYFDVXVF 132
Query: 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
            D+V+ GKP P+I+L   +RLN+ P   +V EDS  GV A K+AG+E +
Sbjct: 133 GDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERI 181

>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb Length = 237

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 94  PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153
           PG    +  LS  G  +A+A++       + I+   G +   +VI G D V  GKP PD+
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARA-IAELTGLDTRLTVIAGDDSVERGKPHPDM 165
Query: 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVP---SLPKQTHRYTAADEVINS 210
            L  A+ L + P   +VI D V     G+AAGM V+ V    S P +  R   AD V++S
Sbjct: 166 ALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMR-AGADTVVDS 224
Query: 211 L 211
Sbjct: 225 F 225

>pdb|1TE2|A Chain A, Putative Phosphatase Ynic From Escherichia Coli K12 Length = 226

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 93  LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD 152
           LPG    +      G+ + LAS S    +E K+       +SF  +  ++++   KP P 
Sbjct: 96  LPGVREAVALCKEQGLLVGLASASPLHXLE-KVLTXFDLRDSFDALASAEKLPYSKPHPQ 154
Query: 153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSL 211
           ++L+ A +L ++P + + +EDSV G +A KAA    + VP+   Q   R+  A+  ++SL
Sbjct: 155 VYLDCAAKLGVDPLTCVALEDSVNGXIASKAARXRSIVVPAPEAQNDPRFVLANVKLSSL 214
Query: 212 LDL 214
            +L
Sbjct: 215 TEL 217

>pdb|4EEK|A Chain A, Crystal Structure Of Had Family Hydrolase Dr_1622 From Deinococcus Radiodurans R1 (Target Efi-501256) With Bound Phosphate And Sodium Length = 259

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 74  EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIE--------SKI 125
           +F++ + + F+  +  V A+ GA   ++ L   GVP A+ SNS R  +         +++
Sbjct: 93  DFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTEL 152
Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175
           + +H ++ S+   VG      GKP PD++  AA++L + P   +VIEDSV
Sbjct: 153 AGEHIYDPSW---VGG----RGKPHPDLYTFAAQQLGILPERCVVIEDSV 195

>pdb|4GIB|A Chain A, 2.27 Angstrom Crystal Structure Of Beta-Phosphoglucomutase (Pgmb) From Clostridium Difficile Length = 250

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 77  NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
           N  Y    D +     LPG   L+  +  + + + L+S S  A     +    G ++ F 
Sbjct: 102 NNYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKNAI---NVLNHLGISDKFD 158
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
            I  + + +  KP P+IFL +AK LN+ P + + IED+  G+ A  +A M  V V
Sbjct: 159 FIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCIGIEDASAGIDAINSANMFSVGV 213

>pdb|3DV9|A Chain A, Putative Beta-Phosphoglucomutase From Bacteroides Vulgatus Length = 247

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Query: 89  KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGK 148
           K +  PGA  ++  +   G+   + + S + ++  ++++        ++ V + +V+ GK
Sbjct: 106 KAERXPGALEVLTKIKSEGLTPXVVTGSGQTSLLDRLNHNFPGIFQANLXVTAFDVKYGK 165
Query: 149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI 208
           P+P+ +L A K+   +P+ +LVIE++ +GV AG AAG+  +AV + P   H     +E  
Sbjct: 166 PNPEPYLXALKKGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGP--LHDNVLLNEGA 223
Query: 209 NSLLDLRPE 217
           N L    P+
Sbjct: 224 NLLFHSXPD 232

>pdb|3FM9|A Chain A, Analysis Of The Structural Determinants Underlying Discrimination Between Substrate And Solvent In Beta- Phosphoglucomutase Catalysis Length = 221

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77  NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
           N+ Y      +      PG  +L+K L  + + +ALAS S       +     G+   F 
Sbjct: 77  NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
            I    EV   KP+PDIF+ AA  + + PS S+ +EDS  G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182

>pdb|3QUB|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47ala Mutant Complexed With Sulfate Length = 243

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHAGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|1LVH|A Chain A, The Structure Of Phosphorylated Beta-phosphoglucomutase From Lactoccocus Lactis To 2.3 Angstrom Resolution Length = 221

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77  NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
           N+ Y      +      PG  +L+K L  + + +ALAS S       +     G+   F 
Sbjct: 77  NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
            I    EV   KP+PDIF+ AA  + + PS S+ +EDS  G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182

>pdb|1O03|A Chain A, Structure Of Pentavalent Phosphorous Intermediate Of An Enzyme Catalyzed Phosphoryl Transfer Reaction Observed On Cocrystallization With Glucose 6-Phosphate Length = 221

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)
Query: 77  NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS 136
           N+ Y      +      PG  +L+K L  + + +ALAS S       +     G+   F 
Sbjct: 77  NDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLERMNLTGY---FD 133
Query: 137 VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
            I    EV   KP+PDIF+ AA  + + PS S+ +EDS  G+ A K +G
Sbjct: 134 AIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDSG 182

>pdb|3QU5|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp11asn Mutant Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3QUT|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp13asn Mutant, An Open Cap Conformation Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3QU4|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Asp13ala Mutant Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3QUQ|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, An Open Cap Conformation Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3QYP|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47asn Mutant Complexed With Calcium And Phosphate Length = 243

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHNGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3R9K|A Chain A, Crystal Structure Of Pyrophosphatase From Bacteroides Thetaiotaomicron, Glu47asp Mutant Complexed With Sulfate, A Closed Cap Conformation Length = 243

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 85/174 (48%), Gaps = 9/174 (5%)
Query: 28  SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVY---SMFS 84
           SE     +  +G +    E +   G+T      I+ +      A  E +  +Y   S+  
Sbjct: 43  SEAWHQVMKTHGLDLSREEAYMHDGRTGASTINIVFQRELGKEATQEEIESIYHEKSILF 102
Query: 85  DHLCKVKALPGANRLIKHLSCHGV-PMALASNSHRATIESKISYQHGWNESF--SVIVGS 141
           +   + + +PGA  L++ +   G+ PM +  +   + +E     +H +   F   ++V +
Sbjct: 103 NSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLER---LEHNFPGMFHKELMVTA 159
Query: 142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
            +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV AG  AG+  +AV + P
Sbjct: 160 FDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGP 213

>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like Hydrolase From Bacteroides Fragilis Length = 225

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 74/168 (44%), Gaps = 9/168 (5%)
Query: 49  KIVGKTPLEEAAIIVEDYGLPCAKH-EFVNEVYSMFSDHLCKVKAL--PGANRLIKHLSC 105
           + +GKT LEE+  I+   G+  A   E   + YS  +D       +  P     + HL  
Sbjct: 47  RTIGKT-LEESFSILT--GITDADQLESFRQEYSKEADIYXNANTILFPDTLPTLTHLKK 103
Query: 106 HGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165
            G+ + + S  +R  I S +   H  ++ F +I+G ++V   KP P+  L A  RL   P
Sbjct: 104 QGIRIGIISTKYRFRILSFLR-NHXPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACP 162
Query: 166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA--ADEVINSL 211
              L I DS +      AAG+    V S       + A   D +I++L
Sbjct: 163 EEVLYIGDSTVDAGTAAAAGVSFTGVTSGXTTAQEFQAYPYDRIISTL 210

>pdb|4G9B|A Chain A, Crystal Structure Of Beta-Phosphoglucomutase Homolog From Escherichia Coli, Target Efi-501172, With Bound Mg, Open Lid Length = 243

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 93  LPGANRLIKHLSCHGVPMALASNSHRA-TIESKISYQHGWNESFSVIVGSDEVRTGKPSP 151
           LPG   L+  L    + + LAS S  A TI + +  +    E F+    + +++  KP P
Sbjct: 97  LPGIRSLLADLRAQQISVGLASVSLNAPTILAALELR----EFFTFCADASQLKNSKPDP 152
Query: 152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
           +IFL A   L + P + + IED+  G+ A  A+GM  V +
Sbjct: 153 EIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGI 192

>pdb|2FDR|A Chain A, Crystal Structure Of Conserved Haloacid Dehalogenase-like Protein Of Unknown Function Atu0790 From Agrobacterium Tumefaciens Str. C58 Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 139 VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV----AVPSL 194
           +G+D V   KP PDIFL  A +  + P   +V+EDSV G+   +AAG  V+    A  + 
Sbjct: 137 LGADRV---KPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGXRVIGFTGASHTY 193
Query: 195 PKQTHRYT--AADEVINSLLDL 214
           P    R T   A+ VI+   DL
Sbjct: 194 PSHADRLTDAGAETVISRXQDL 215

>pdb|3KZX|A Chain A, Crystal Structure Of A Had-Superfamily Hydrolase From Ehrlichia Chaffeensis At 1.9a Resolution Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 95  GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF 154
           GA  L+  L  + + MA+ SN +   + S+I +++     F  I+GS +  T KPSP+  
Sbjct: 107 GAIELLDTLKENNITMAIVSNKNGERLRSEIHHKN-LTHYFDSIIGSGDTGTIKPSPEPV 165
Query: 155 LEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAG 185
           L A   +N+EPS     I DS+  + +   AG
Sbjct: 166 LAALTNINIEPSKEVFFIGDSISDIQSAIEAG 197

>pdb|2YY6|A Chain A, Crystal Structure Of The Phosphoglycolate Phosphatase From Aquifex Aeolicus Vf5 Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 72  KHEFVNEVYSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 126
           K +F  E   +F  H  +      K  P     ++ L   G  +A+ SN     +  KI 
Sbjct: 57  KDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEE-LSKKIL 115
Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
                +  F +IVG D     KPSP   L+  + L  EP  +L++ D+   + AGK AG
Sbjct: 116 DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAG 174

>pdb|2NYV|A Chain A, X-Ray Crystal Structure Of A Phosphoglycolate Phosphatase From Aquifex Aeolicus Length = 222

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 72  KHEFVNEVYSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS 126
           K +F  E   +F  H  +      K  P     ++ L   G  +A+ SN     +  KI 
Sbjct: 59  KDKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNK-LEELSKKIL 117
Query: 127 YQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
                +  F +IVG D     KPSP   L+  + L  EP  +L++ D+   + AGK AG
Sbjct: 118 DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAGKRAG 176

>pdb|3S6J|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas Syringae Length = 233

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 89  KVKALPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQHGWNESFSVIVGSDEVRT 146
           ++ ALPGA  L++ L    +   +A++     ATI  K + +   N+    IV  D+V  
Sbjct: 89  QIIALPGAVELLETLDKENLKWCIATSGGIDTATINLK-ALKLDINKIN--IVTRDDVSY 145
Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182
           GKP PD+FL AAK++       LVI D++   +A +
Sbjct: 146 GKPDPDLFLAAAKKIGAPIDECLVIGDAIWDXLAAR 181

>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase (Np_784602.1) From Lactobacillus Plantarum At 1.50 A Resolution Length = 209

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 27  FSEVLKTFLVKYGKEWDGREKHKI---VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF 83
           ++ V +  L  YGK +   +  K      +    E  I   ++    A++E V       
Sbjct: 22  YTTVXREVLATYGKPFSPAQAQKTFPXAAEQAXTELGIAASEFDHFQAQYEDVX------ 75
Query: 84  SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE 143
           + H  +++  PG   L + L    + + + ++  R  +ES     + +    +V + +D+
Sbjct: 76  ASHYDQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGXR-SYPFXXRXAVTISADD 133
Query: 144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187
               KP P   L A +++N+ P ++L I DSV      +AA ++
Sbjct: 134 TPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVD 177

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	1e-87
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	1e-67
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	3e-65
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	4e-63
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	2e-61
1te2_A	226	Putative phosphatase; structural genomics, phospha	2e-60
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	3e-59
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	9e-56
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	6e-55
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	8e-53
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	1e-52
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	5e-52
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	2e-51
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	5e-36
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	1e-31
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	2e-31
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	2e-31
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	6e-31
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	2e-30
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	6e-30
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	4e-28
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	2e-27
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	3e-27
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	1e-26
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	2e-26
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	2e-25
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	7e-25
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	7e-25
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	2e-24
2zg6_A	220	Putative uncharacterized protein ST2620, probable	3e-24
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	4e-24
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	5e-24
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	1e-23
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	1e-23
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	2e-23
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	4e-23
2hsz_A	243	Novel predicted phosphatase; structural genomics,	6e-23
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	3e-22
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	3e-20
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	5e-20
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	6e-19
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	1e-18
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	3e-17
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	5e-17
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	5e-16
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	2e-15
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	3e-15
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	5e-15
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	4e-14
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	4e-14
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	6e-14
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	8e-13
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	1e-12
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	3e-09
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	8e-09
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	2e-07
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	3e-07
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	4e-07
1n08_A	163	Putative riboflavin kinase; phophoryl transferases	4e-07
3bnw_A	181	Riboflavin kinase, putative; APO structure, struct	1e-06
1nb0_A	147	Hypothetical protein FLJ11149; beta barrel, transf	6e-06
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	1e-05
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	2e-05
2o2x_A	218	Hypothetical protein; structural genomics, joint c	3e-05
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	5e-05
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	5e-04
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	6e-04
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	7e-04

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens} Length = 250

 Score =  259 bits (664), Expect = 1e-87
 Identities = 91/229 (39%), Positives = 129/229 (56%), Gaps = 5/229 (2%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           MA P + + + +I D+DG LL+T+ ++S V +    +Y K++    K  ++GK  LE A 
Sbjct: 23  MAAPPQPV-THLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQ 81

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
           II++   LP +K E V E  +   +       +PGA +LI HL  HG+P ALA++S  A+
Sbjct: 82  IIIDVLQLPMSKEELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSAS 141

Query: 121 IESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLNMEPSSS--LVIEDSVI 176
            + K S    +   FS IV  D  EV+ GKP PDIFL  AKR +  P+    LV ED+  
Sbjct: 142 FDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFSPPPAMEKCLVFEDAPN 201

Query: 177 GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ 225
           GV A  AAGM+VV VP         T A  V+NSL D +PE +GLP ++
Sbjct: 202 GVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE 250

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311} Length = 214

 Score =  207 bits (530), Expect = 1e-67
 Identities = 53/211 (25%), Positives = 102/211 (48%), Gaps = 4/211 (1%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
             ++  +I D+DG L +T+  + +   +FL + G   D       +G    +    I+ D
Sbjct: 2   NAMVEAIIFDMDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRD 61

Query: 66  YGLPCAKHEFVNEVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
                       E  +   ++    K    P   +++  +   G+ + LAS+S +A I  
Sbjct: 62  EYDKWDVSTLQEEYNTYKQNNPLPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFR 121

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
            +  ++     F +++  +E +  KP+P+I+L A K+LN++ S +L+IEDS  G+ AG A
Sbjct: 122 ALE-ENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAAGVA 180

Query: 184 AGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           A +EV A+    +     +AA  +++SL D+
Sbjct: 181 ADVEVWAIRD-NEFGMDQSAAKGLLDSLTDV 210

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus} Length = 247

 Score =  202 bits (516), Expect = 3e-65
 Identities = 49/229 (21%), Positives = 107/229 (46%), Gaps = 12/229 (5%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           V+ D+DG L ++    +E     + ++G      E +   G+T      I+        A
Sbjct: 26  VLFDMDGVLFDSMPNHAESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRERGHDA 85

Query: 72  KHEFVNEVYSMFSDHLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
             E +  +Y   ++   K    + +PGA  ++  +   G+   + + S + ++  ++++ 
Sbjct: 86  TEEEIKAIYQAKTEEFNKCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNHN 145

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
                  +++V + +V+ GKP+P+ +L A K+   +P+ +LVIE++ +GV AG AAG+  
Sbjct: 146 FPGIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNEALVIENAPLGVQAGVAAGIFT 205

Query: 189 VAVPS--LPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEGTLPSE 235
           +AV +  L         A+ + +S+ D   + W      + ++  L  +
Sbjct: 206 IAVNTGPLHDNVLLNEGANLLFHSMPDF-NKNW------ETLQSALKQD 247

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A Length = 243

 Score =  192 bits (490), Expect = 2e-61
 Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 5/218 (2%)

Query: 2   AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI 61
              ++K +  V+ D+DG L N+    SE     +  +G +    E +   G+T      I
Sbjct: 17  GSHMRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTINI 76

Query: 62  IVEDYGLPCAKHEFVNEVYSMFSDH---LCKVKALPGANRLIKHLSCHGVPMALASNSHR 118
           + +      A  E +  +Y   S       + + +PGA  L++ +   G+   + + S +
Sbjct: 77  VFQRELGKEATQEEIESIYHEKSILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQ 136

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178
            ++  ++ +         ++V + +V+ GKP+P+ +L A K+  ++   ++VIE++ +GV
Sbjct: 137 LSLLERLEHNFPGMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADEAVVIENAPLGV 196

Query: 179 VAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 214
            AG  AG+  +AV +  L  Q      AD +  S+  L
Sbjct: 197 EAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTL 234

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6 Length = 226

 Score =  189 bits (482), Expect = 2e-60
 Identities = 47/211 (22%), Positives = 95/211 (45%), Gaps = 5/211 (2%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KIVGKTPLEEAAIIVEDYGLP- 69
            I D+DG L++++ ++       +   G +   R +    +G        +         
Sbjct: 12  AIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNG 71

Query: 70  CAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
            ++ E V  V +     + +    LPG    +      G+ + LAS S    +E  ++  
Sbjct: 72  PSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLT-M 130

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
               +SF  +  ++++   KP P ++L+ A +L ++P + + +EDSV G++A KAA M  
Sbjct: 131 FDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRS 190

Query: 189 VAVPSLPKQTH-RYTAADEVINSLLDLRPEK 218
           + VP+   Q   R+  A+  ++SL +L  + 
Sbjct: 191 IVVPAPEAQNDPRFVLANVKLSSLTELTAKD 221

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A Length = 259

 Score =  187 bits (478), Expect = 3e-59
 Identities = 63/225 (28%), Positives = 102/225 (45%), Gaps = 13/225 (5%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYG 67
              V+ DLDG L+ ++G+ ++V ++ L + G   D  E      G+      A + + + 
Sbjct: 28  FDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQHD 87

Query: 68  LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY 127
                 +F++ + + F+  +  V A+ GA   ++ L   GVP A+ SNS R  +  K+  
Sbjct: 88  FVPP-PDFLDVLETRFNAAMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLR- 145

Query: 128 QHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
             G  E     +   S     GKP PD++  AA++L + P   +VIEDSV G  AG AAG
Sbjct: 146 VAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDSVTGGAAGLAAG 205

Query: 186 MEVVAV--PSLPKQTH----RYTAADEVINSLLDLRP--EKWGLP 222
             +  +  P  P            A  V+ S  +LR    + GL 
Sbjct: 206 ATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAELRAALAEAGLL 250

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A Length = 221

 Score =  177 bits (451), Expect = 9e-56
 Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 14/214 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPC 70
           V+ DLDG + +T        K    + G     R+   ++ G +  +    I++      
Sbjct: 5   VLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKV 64

Query: 71  AKHEFV------NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 124
           +  EF       N+ Y      +      PG  +L+K L  + + +ALAS S       +
Sbjct: 65  SAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKNGPFLLE 124

Query: 125 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
              +      F  I    EV   KP+PDIF+ AA  + + PS S+ +EDS  G+ A K +
Sbjct: 125 ---RMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKDS 181

Query: 185 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218
           G   + V               ++        E 
Sbjct: 182 GALPIGVGR----PEDLGDDIVIVPDTSHYTLEF 211

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis} Length = 233

 Score =  175 bits (447), Expect = 6e-55
 Identities = 64/215 (29%), Positives = 87/215 (40%), Gaps = 15/215 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           VI DLDG + +T        K    +    +D     ++ G +  E    I+   G    
Sbjct: 5   VIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETK 64

Query: 72  -----KHEFV---NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
                K E +   N  Y M    L     LPG  RL+  L    + + LAS+S  A    
Sbjct: 65  YTNAEKQELMHRKNRDYQMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRNAP--- 121

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
           KI  +    + F  IV    +  GKP PDIFL AA  L++ P+    IED+  G+ A K+
Sbjct: 122 KILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISAIKS 181

Query: 184 AGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218
           AGM  V V            AD V+    DL  E 
Sbjct: 182 AGMFAVGVGQ----GQPMLGADLVVRQTSDLTLEL 212

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6 Length = 229

 Score =  170 bits (432), Expect = 8e-53
 Identities = 52/226 (23%), Positives = 91/226 (40%), Gaps = 20/226 (8%)

Query: 9   MS---CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVE 64
           MS    +I D DG L++++ + ++V    L + G      E  +   G T       +  
Sbjct: 1   MSGFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVES 60

Query: 65  DYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
           +  +P      +++   +    L + VK + G    +  L     P  + SNS    ++ 
Sbjct: 61  EASIP-LSASLLDKSEKLLDMRLERDVKIIDGVKFALSRL---TTPRCICSNSSSHRLDM 116

Query: 124 KISYQHGWNESFSVIVGSDE---VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
            ++ + G    F+  + S +       KP PDIFL  A +  + P   +V+EDSV G+  
Sbjct: 117 MLT-KVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHG 175

Query: 181 GKAAGMEVVAVPSLP------KQTHRYTAADEVINSLLDLRPEKWG 220
            +AAGM V+                    A+ VI+ + DL P    
Sbjct: 176 ARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDL-PAVIA 220

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV} Length = 233

 Score =  169 bits (431), Expect = 1e-52
 Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 12/213 (5%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
            I DLDGTL ++        K  L            H+ +G +       +  + G+   
Sbjct: 9   FIFDLDGTLTDSVYQNVAAWKEALDAENIPLAMWRIHRKIGMSGGLMLKSLSRETGMSIT 68

Query: 72  KHEFV------NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
             +         + Y         + ALPGA  L++ L    +   +A++    T    +
Sbjct: 69  DEQAERLSEKHAQAYERLQHQ---IIALPGAVELLETLDKENLKWCIATSGGIDTATINL 125

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
                 + +   IV  D+V  GKP PD+FL AAK++       LVI D++  ++A +   
Sbjct: 126 K-ALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIGAPIDECLVIGDAIWDMLAARRCK 184

Query: 186 MEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 216
              V + S            A  V    LDL  
Sbjct: 185 ATGVGLLSGGYDIGELERAGALRVYEDPLDLLN 217

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli} Length = 243

 Score =  168 bits (428), Expect = 5e-52
 Identities = 52/226 (23%), Positives = 85/226 (37%), Gaps = 21/226 (9%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           M   L+     VI DLDG + +T  +  +  +    + G   D +    + G +  E   
Sbjct: 1   MVMKLQ----GVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLR 56

Query: 61  IIVEDYGLP--------CAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMAL 112
            I++  G                 N +Y      L     LPG   L+  L    + + L
Sbjct: 57  RILQHGGKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGL 116

Query: 113 ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172
           AS S  A             E F+    + +++  KP P+IFL A   L + P + + IE
Sbjct: 117 ASVSLNAPTILA---ALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIE 173

Query: 173 DSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218
           D+  G+ A  A+GM  V + +        T A  ++ S   L   +
Sbjct: 174 DAQAGIDAINASGMRSVGIGA------GLTGAQLLLPSTESLTWPR 213

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae} Length = 275

 Score =  168 bits (427), Expect = 2e-51
 Identities = 42/227 (18%), Positives = 89/227 (39%), Gaps = 14/227 (6%)

Query: 2   AQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI 61
            +PL   ++  + D+DGT++ +    +   + F             H   G    +  A 
Sbjct: 28  TKPLSLKINAALFDVDGTIIISQPAIAAFWRDFGKDKPYFDAEHVIHISHGWRTYDAIAK 87

Query: 62  IVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHG-VPMALASNSHRAT 120
              D+      ++   E+   + +H      +PGA +L   L+       A+A++  R  
Sbjct: 88  FAPDFADEEYVNKLEGEIPEKYGEH---SIEVPGAVKLCNALNALPKEKWAVATSGTRDM 144

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-------MEPSSSLVIED 173
            +          +     + +++V+ GKP P+ +L+    L           S  +V ED
Sbjct: 145 AKKWF--DILKIKRPEYFITANDVKQGKPHPEPYLKGRNGLGFPINEQDPSKSKVVVFED 202

Query: 174 SVIGVVAGKAAGMEVVAVPS-LPKQTHRYTAADEVINSLLDLRPEKW 219
           +  G+ AGKAAG ++V + +       +    D ++ +   +R  ++
Sbjct: 203 APAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRVGEY 249

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} Length = 277

 Score =  128 bits (323), Expect = 5e-36
 Identities = 34/201 (16%), Positives = 75/201 (37%), Gaps = 16/201 (7%)

Query: 9   MSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYG 67
           +  +ILD  GT ++   +           + G E    E  + +G    E    ++ +  
Sbjct: 14  VEALILDWAGTTIDFGSLAPVYAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGNSR 73

Query: 68  LP---------CAKHEFVNEVYSMFSDHLCK-----VKALPGANRLIKHLSCHGVPMALA 113
           +           +  E +  +Y +F+    +      + +PG   +   L   G+ +   
Sbjct: 74  IANAWLSIKGQASNEEDIKRLYDLFAPIQTRIVAQRSQLIPGWKEVFDKLIAQGIKVGGN 133

Query: 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIE 172
           +      +   +        + +  V + +V  G+P PD+ L+ A  L +   +  + ++
Sbjct: 134 TGYGPGMMAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVALELEVGHVNGCIKVD 193

Query: 173 DSVIGVVAGKAAGMEVVAVPS 193
           D++ G+  G  AGM  V V  
Sbjct: 194 DTLPGIEEGLRAGMWTVGVSC 214

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis} Length = 231

 Score =  115 bits (291), Expect = 1e-31
 Identities = 45/208 (21%), Positives = 81/208 (38%), Gaps = 12/208 (5%)

Query: 12  VILDLDGTLLNT-DGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
           VI D   TL++T   +        L + G +    +    +  + + +  I +       
Sbjct: 28  VIFDWYNTLIDTSINIDRTTFYQVLDQMGYKNIDLDS---IPNSTIPKYLITLLGKRWKE 84

Query: 71  AKHEFVNEVY-SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129
           A   + N +  S  SD+        GA  L+  L  + + MA+ SN +   +     +  
Sbjct: 85  ATILYENSLEKSQKSDN---FMLNDGAIELLDTLKENNITMAIVSNKNGERLR-SEIHHK 140

Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEV 188
                F  I+GS +  T KPSP+  L A   +N+EPS     I DS+  + +   AG   
Sbjct: 141 NLTHYFDSIIGSGDTGTIKPSPEPVLAALTNINIEPSKEVFFIGDSISDIQSAIEAGCLP 200

Query: 189 VAVP--SLPKQTHRYTAADEVINSLLDL 214
           +     ++ K    +    ++ N +  L
Sbjct: 201 IKYGSTNIIKDILSFKNFYDIRNFICQL 228

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3 Length = 190

 Score =  114 bits (287), Expect = 2e-31
 Identities = 42/189 (22%), Positives = 69/189 (36%), Gaps = 14/189 (7%)

Query: 7   KLMS--CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE 64
           K M     I DL GTLL+     +      L  YG   D    ++ +  +        +E
Sbjct: 2   KGMKYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVS----TPFAIE 57

Query: 65  DYGLPCAKHEFVNEVYSMFSDHLC-KVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
            +       E   E Y               G + L++ +S  G    L S+ +   +E 
Sbjct: 58  TFA---PNLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQVLE- 113

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
            I  +      F+ +V S      KP+P+  L   ++  +     LVI D  I + AG+A
Sbjct: 114 -ILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQISS--GLVIGDRPIDIEAGQA 170

Query: 184 AGMEVVAVP 192
           AG++     
Sbjct: 171 AGLDTHLFT 179

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A Length = 267

 Score =  116 bits (291), Expect = 2e-31
 Identities = 41/248 (16%), Positives = 77/248 (31%), Gaps = 43/248 (17%)

Query: 11  CVILDLDGTLLNTDGMFS-EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL- 68
            VI    GT ++       EV      K G      E  K +G   ++    + E   + 
Sbjct: 8   AVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIA 67

Query: 69  --------PCAKHEFVNEVYSMFSDHL-----CKVKALPGANRLIKHLSCHGVPMALASN 115
                          + E+Y  F + L          + G   +I  L   G+ +   + 
Sbjct: 68  SEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTG 127

Query: 116 SHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS-LVIED 173
             R  ++     +          +V  D+V  G+P P +  + A  L + P +  + + D
Sbjct: 128 YTREMMDIVAK-EAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVGD 186

Query: 174 SVIGVVAGKAAGMEVVAVPS-------LPKQTHRYTA------------------ADEVI 208
           +V  +  G+ AGM  V V           ++     +                  A   I
Sbjct: 187 TVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFTI 246

Query: 209 NSLLDLRP 216
            ++ +L  
Sbjct: 247 ETMQELES 254

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 207

 Score =  113 bits (284), Expect = 6e-31
 Identities = 38/208 (18%), Positives = 80/208 (38%), Gaps = 15/208 (7%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEA-AIIVEDYGLPC 70
            I DLDGTLL++       ++    ++   +D  +  + + K  +++    + ED  L  
Sbjct: 7   FIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL-- 64

Query: 71  AKHEFVNEVYSMFSDHLC-KVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISYQ 128
              E +N+V +        +V  +PGA  ++      G+   + ++  + A     I   
Sbjct: 65  -DVEVLNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAF---TILKD 120

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
            G    F+ I+ S      KPSP+       +  +   ++  I D  + V   + +G++ 
Sbjct: 121 LGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQS 180

Query: 189 VAVPSLPKQTHRYTAADEVINSLLDLRP 216
           +               +  I +L D+  
Sbjct: 181 INF------LESTYEGNHRIQALADISR 202

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 225

 Score =  111 bits (281), Expect = 2e-30
 Identities = 48/224 (21%), Positives = 82/224 (36%), Gaps = 19/224 (8%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLP 69
             + D D TL ++        ++ L ++G      +   + +GK  LEE+  I+      
Sbjct: 8   VYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGK-TLEESFSIL----TG 62

Query: 70  CAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIES 123
               + +      +S              P     + HL   G+ + + S       +  
Sbjct: 63  ITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRIL-- 120

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
                H  ++ F +I+G ++V   KP P+  L A  RL   P   L I DS +      A
Sbjct: 121 SFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAA 180

Query: 184 AGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP---EKWGLP 222
           AG+    V S     Q  +    D +I++L  L     +K G P
Sbjct: 181 AGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCP 224

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6 Length = 209

 Score =  110 bits (277), Expect = 6e-30
 Identities = 40/211 (18%), Positives = 83/211 (39%), Gaps = 15/211 (7%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLP 69
            ++ D+DGTL N+   ++ V++  L  YGK +   +  K             + E  G+ 
Sbjct: 6   ALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAA----EQAMTE-LGIA 60

Query: 70  CAKHEFVNEVY-SMFSDHLCKVKALPGANRLIKHLSCHGVPMALASN-SHRATIESKISY 127
            ++ +     Y  + + H  +++  PG   L + L    + + + ++             
Sbjct: 61  ASEFDHFQAQYEDVMASHYDQIELYPGITSLFEQLP-SELRLGIVTSQRRNELE--SGMR 117

Query: 128 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME 187
            + +    +V + +D+    KP P   L A +++N+ P ++L I DSV      +AA ++
Sbjct: 118 SYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVD 177

Query: 188 VVAVP--SLPKQTHRYTAADEVINSLLDLRP 216
                    P   H+           LD+  
Sbjct: 178 FGLAVWGMDPNADHQ--KVAHRFQKPLDILE 206

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6 Length = 234

 Score =  106 bits (266), Expect = 4e-28
 Identities = 43/224 (19%), Positives = 80/224 (35%), Gaps = 17/224 (7%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           + L   V+ D+DGTLL  + M   VL   L++          H   GK        ++ +
Sbjct: 4   RTL---VLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSN 60

Query: 66  YGLPCAK-HEFVNEVYSMFSDHL------CKVKALPGANRLIKHLSCHG-VPMALASNSH 117
            GL  A+  +  ++    +            +  L G   L+  LS    V + L + + 
Sbjct: 61  VGLERAEIADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNF 120

Query: 118 RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL---NMEPSSSLVIEDS 174
            A+   K+    G +  F     +D+       P I LE A+R+   N  PS  ++I D+
Sbjct: 121 EASGRHKLK-LPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSPSQIVIIGDT 179

Query: 175 VIGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 216
              +   +      +AV +     +         +  +  +   
Sbjct: 180 EHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDE 223

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii} Length = 235

 Score =  104 bits (262), Expect = 2e-27
 Identities = 36/226 (15%), Positives = 72/226 (31%), Gaps = 24/226 (10%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYG---------------KEWDGREKHKIVGKTP 55
            V  D+  TLL+ + M  E         G               +    R +     +  
Sbjct: 6   LVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAVIEVRNEIKKMRAQASEDPRKV 65

Query: 56  LEEA-AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALAS 114
           L  +   +     +     E V    +    ++ +   L G    ++ +   G+  A+  
Sbjct: 66  LTGSQEALAGKLKVD---VELVKRATARAILNVDESLVLEGTKEALQFVKERGLKTAVIG 122

Query: 115 N---SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171
           N      +     +  + G  E       +DEV + KP  ++F +      ++P  SL I
Sbjct: 123 NVMFWPGSYTRLLLE-RFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNSFEVKPEESLHI 181

Query: 172 EDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRP 216
            D+        +  GM  V +     +  +       I S+ +L+ 
Sbjct: 182 GDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANLKD 227

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii} Length = 241

 Score =  104 bits (261), Expect = 3e-27
 Identities = 39/220 (17%), Positives = 84/220 (38%), Gaps = 21/220 (9%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------GKTPLEEA 59
           +  DLD TL++T  +     K  +    +     +                       + 
Sbjct: 5   IFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHFD- 63

Query: 60  AIIVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMALASNSHR 118
             ++    LP    ++++     + +     ++ +PGA +++  L   G  + + ++ + 
Sbjct: 64  -YLLRRLDLP-YNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGNP 121

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG- 177
                KI  +   ++ F  ++ SD     KP P IF +A K  N++P  +L++ D +   
Sbjct: 122 VKQWEKI-LRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYSD 180

Query: 178 VVAGKAAGMEVVAV---PSLPKQTHRYTAADEVINSLLDL 214
           +   K  GM+ V         ++      AD  I++L  L
Sbjct: 181 IYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESL 220

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} Length = 226

 Score =  102 bits (257), Expect = 1e-26
 Identities = 40/192 (20%), Positives = 76/192 (39%), Gaps = 15/192 (7%)

Query: 7   KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVED 65
            L + V+ DLDGTL ++    ++ +K  L K+  + +     +K VG  PL+ +   +E 
Sbjct: 2   SLYNYVLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGP-PLKTS--FMEY 58

Query: 66  YGLPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRA 119
           Y       E        + D+     + + K   G   L+  L  +G  + +A++     
Sbjct: 59  YNFD---EETATVAIDYYRDYFKAKGMFENKVYDGIEALLSSLKDYGFHLVVATSKPTVF 115

Query: 120 TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179
           +   +I         F  IVGS          D+   A + LN++   +++I D    V+
Sbjct: 116 SK--QILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMIGDREYDVI 173

Query: 180 AGKAAGMEVVAV 191
                 +  + V
Sbjct: 174 GALKNNLPSIGV 185

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A* Length = 205

 Score =  101 bits (253), Expect = 2e-26
 Identities = 40/206 (19%), Positives = 73/206 (35%), Gaps = 22/206 (10%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
            + D+DGTL      F+ + +          +      +    P +E+A          A
Sbjct: 9   WVFDMDGTLTIAVHDFAAIREAL----SIPAEDDILTHLAA-LPADESA----------A 53

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
           KH ++ E     +      +  PGA  L++ L+  G  + + + + R      +    G 
Sbjct: 54  KHAWLLEHERDLAQGS---RPAPGAVELVRELAGRGYRLGILTRNARELAHVTLE-AIGL 109

Query: 132 NESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190
            + F+   V   +    KP P   L+ A+  ++ PS  +++ D    +  G+AAG   V 
Sbjct: 110 ADCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPSRMVMVGDYRFDLDCGRAAGTRTVL 169

Query: 191 VPSLPKQTHRYTAADEVINSLLDLRP 216
           V             D        LR 
Sbjct: 170 VN--LPDNPWPELTDWHARDCAQLRD 193

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1} Length = 200

 Score = 98.6 bits (246), Expect = 2e-25
 Identities = 36/217 (16%), Positives = 64/217 (29%), Gaps = 34/217 (15%)

Query: 9   MSCVILDLDGTLLNTDG----------MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEE 58
           +  +  D+ G LL               F      F  ++       E     G+  L E
Sbjct: 4   IKALFWDIGGVLLTNGWDREQRADVAQRFGLDTDDFTERHRLAAPELEL----GRMTLAE 59

Query: 59  A-AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSH 117
               +V          +F   +           +  P    L + L      M   +N  
Sbjct: 60  YLEQVVFYQPRDFTPEDFRAVMEEQS-------QPRPEVLALARDLG-QRYRMYSLNNEG 111

Query: 118 RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG 177
           R   E +I    G  E       S  +   KP+P ++        + P  +++++D +  
Sbjct: 112 RDLNEYRIR-TFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVMVDDRLQN 170

Query: 178 VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           V A +A GM             +   A ++   L  L
Sbjct: 171 VQAARAVGM----------HAVQCVDAAQLREELAAL 197

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032} Length = 137

 Score = 95.2 bits (237), Expect = 7e-25
 Identities = 25/127 (19%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 91  KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS 150
           +       L+     +GV   + SN       + I  +   N     ++ S E+   KP 
Sbjct: 18  EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIR-ELETNGVVDKVLLSGELGVEKPE 76

Query: 151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS 210
              F  AA  +++     ++++DS++ V     AG+  V      +       A   I  
Sbjct: 77  EAAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQFDR-------AVVEIVG 129

Query: 211 LLDLRPE 217
           L  L  E
Sbjct: 130 LFGLEGE 136

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens} Length = 263

 Score = 98.3 bits (245), Expect = 7e-25
 Identities = 45/234 (19%), Positives = 77/234 (32%), Gaps = 31/234 (13%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYG--------------------KEWDGREKHKI 50
            +  D+  TLL       E   T    +G                      +        
Sbjct: 3   LLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHG 62

Query: 51  VGKTPLEEAAI--IVEDYGLPCAK--HEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCH 106
           +         +       G+  A+       ++Y  FS   C  + L GA   ++     
Sbjct: 63  LTSRQWWLDVVLQTFHLAGVQDAQAVAPIAEQLYKDFSHP-CTWQVLDGAEDTLRECRTR 121

Query: 107 GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166
           G+ +A+ SN     +E  +    G  E F  ++ S+     KP P IF EA +  +MEP 
Sbjct: 122 GLRLAVISNFD-RRLEGILG-GLGLREHFDFVLTSEAAGWPKPDPRIFQEALRLAHMEPV 179

Query: 167 SSLVIEDSVIG-VVAGKAAGMEVVAVP---SLPKQTHRYTAADEVINSLLDLRP 216
            +  + D+ +      +A GM    V    +L          + ++ SL  L P
Sbjct: 180 VAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLP 233

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2 Length = 206

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 34/216 (15%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKE-------------WDGREKHKIVGKTPLEE 58
            I DL   +++ D  F+ VL  +                    +   E+ +I   +    
Sbjct: 10  YIFDLGNVIVDID--FNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEI---SDEAF 64

Query: 59  AAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHR 118
           A  +  +  LP +  +F +   ++F          P    ++  L   G  + + SN++R
Sbjct: 65  AEALCHEMALPLSYEQFSHGWQAVFVA------LRPEVIAIMHKLREQGHRVVVLSNTNR 118

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV 178
                         ++   I  S ++   KP   I+    +     PS ++  +D+   +
Sbjct: 119 LHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNI 178

Query: 179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
                 G+           +        + +    +
Sbjct: 179 EGANQLGI----------TSILVKDKTTIPDYFAKV 204

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii} Length = 220

 Score = 95.9 bits (239), Expect = 3e-24
 Identities = 35/217 (16%), Positives = 78/217 (35%), Gaps = 24/217 (11%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKT------PLEEA----- 59
            V++D   TL+    +F E +   L   G + D R+  +   K       P E+      
Sbjct: 5   AVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAMGMINYPDEDGLEHVD 64

Query: 60  -AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHR 118
               +   G+       V E+                    ++ L  +G  +AL SN+  
Sbjct: 65  PKDFLYILGIY-PSERLVKELKEADIRDGE-AFLYDDTLEFLEGLKSNGYKLALVSNAS- 121

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG- 177
             +++ +  +    + F  +  S E++  KP+P IF  A  ++      ++ + D     
Sbjct: 122 PRVKTLLE-KFDLKKYFDALALSYEIKAVKPNPKIFGFALAKVGYP---AVHVGDIYELD 177

Query: 178 VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
            +  K + ++ + +     +   Y    + + +L + 
Sbjct: 178 YIGAKRSYVDPILL----DRYDFYPDVRDRVKNLREA 210

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A Length = 260

 Score = 96.8 bits (241), Expect = 4e-24
 Identities = 42/235 (17%), Positives = 83/235 (35%), Gaps = 28/235 (11%)

Query: 6   KKLMS--CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------ 51
             L     V  DLD TL++T G     +   +     ++  +E+ +I+            
Sbjct: 13  MGLSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKEC 72

Query: 52  ---GKTPLEEA-----AIIVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKH 102
                T + +         +++        +   E Y ++     + +        ++  
Sbjct: 73  FHPYSTCITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTE 132

Query: 103 LSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN 162
           L    V + L +N  R T   KI         F  IV   E +  KP+P IF      L 
Sbjct: 133 LR-KEVRLLLLTNGDRQTQREKI-EACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLG 190

Query: 163 MEPSSSLVIEDSVIG-VVAGKAAGME--VVAVPSLPKQTHRYTAADEVINSLLDL 214
           ++P   +++ D++   +  G  AG++  V    S             +++S+L+L
Sbjct: 191 VQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL 245

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A Length = 222

 Score = 95.3 bits (238), Expect = 5e-24
 Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 22/217 (10%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYG 67
           +  ++ DLDGTL+++    +  L+  L + G E    +   K +G         ++E   
Sbjct: 3   LRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGG----VRALLEK-V 57

Query: 68  LPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRATI 121
           L     +F  E   +F  H     +   K  P     ++ L   G  +A+ SN     + 
Sbjct: 58  LK---DKFREEYVEVFRKHYLENPVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSK 114

Query: 122 ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181
             KI      +  F +IVG D     KPSP   L+  + L  EP  +L++ D+   + AG
Sbjct: 115 --KILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEPEKALIVGDTDADIEAG 172

Query: 182 KAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDLRP 216
           K AG +        +   +      D  ++   DL  
Sbjct: 173 KRAGTKTALALWGYVKLNSQI---PDFTLSRPSDLVK 206

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile} Length = 240

 Score = 94.6 bits (236), Expect = 1e-23
 Identities = 32/198 (16%), Positives = 73/198 (36%), Gaps = 19/198 (9%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
           M +  +     V+ DLDGTL +     ++ ++  L  +G + D     + +G  PL +  
Sbjct: 25  MKKNYE----IVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGP-PLHDT- 78

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN 115
              E Y       +   E    + ++     + + K       +++ L  +G  + +A++
Sbjct: 79  -FKEYYKFE---DKKAKEAVEKYREYFADKGIFENKIYENMKEILEMLYKNGKILLVATS 134

Query: 116 -SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM-EPSSSLVIED 173
                     I      +  F  I GS+   T     ++        N+ +    +++ D
Sbjct: 135 KPTVFAE--TILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGD 192

Query: 174 SVIGVVAGKAAGMEVVAV 191
               ++  K  G++ + V
Sbjct: 193 RKYDIIGAKKIGIDSIGV 210

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis} Length = 211

 Score = 93.7 bits (233), Expect = 1e-23
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 36/223 (16%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV----------GKTPLEE-AA 60
           ++ DL G L++ +    E ++ F      + +       +          G+   EE   
Sbjct: 8   IVFDLGGVLIHLN--REESIRRFKAIGVADIE-EMLDPYLQKGLFLDLESGRKSEEEFRT 64

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            +    G      +  + +     +       +                + L SN++   
Sbjct: 65  ELSRYIGKELTYQQVYDALLGFLEE-------ISAEKFDYIDSLRPDYRLFLLSNTNPYV 117

Query: 121 IESKISYQH-----GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175
           ++  +S +        +  F  +  S ++   KP+ DIFLE      M+P  +L I+D  
Sbjct: 118 LDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIFLEMIADSGMKPEETLFIDDGP 177

Query: 176 IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK 218
             V   +  G            T+     +  I ++  L  E+
Sbjct: 178 ANVATAERLGF----------HTYCPDNGENWIPAITRLLREQ 210

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A Length = 238

 Score = 94.4 bits (235), Expect = 2e-23
 Identities = 40/223 (17%), Positives = 82/223 (36%), Gaps = 24/223 (10%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIV----------GKTPLEE 58
            ++ D+D T+L+     +  L+            D + ++K +          GK   +E
Sbjct: 9   TLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDE 68

Query: 59  A-----AIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALA 113
                 + ++++YG          + Y  F +   ++  + GA  LI +L      + + 
Sbjct: 69  VVNTRFSALLKEYGYEADGALL-EQKYRRFLEEGHQL--IDGAFDLISNLQ-QQFDLYIV 124

Query: 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL-NMEPSSSLVIE 172
           +N    T   ++    G    F  I  S++    KP  + F    +R+       +L+I 
Sbjct: 125 TNGVSHTQYKRL-RDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIG 183

Query: 173 DSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           DS+   +  G+ AG++   +    K           I  L +L
Sbjct: 184 DSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEEL 226

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6 Length = 210

 Score = 92.6 bits (231), Expect = 4e-23
 Identities = 29/192 (15%), Positives = 71/192 (36%), Gaps = 20/192 (10%)

Query: 7   KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVED 65
             ++ +  DLDGTL+++             + G      +     +G  PLE +      
Sbjct: 2   TSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGP-PLESS---FAT 57

Query: 66  YGLPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRA 119
             L     + ++E   ++  +     + + +  P    L++ LS    P+ + +      
Sbjct: 58  C-LS---KDQISEAVQIYRSYYKAKGIYEAQLFPQIIDLLEELS-SSYPLYITTTKDTST 112

Query: 120 TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV 179
                ++     +  F  I GS          D+  +A +   + P  +++I D+   ++
Sbjct: 113 AQ--DMAKNLEIHHFFDGIYGSSPE--APHKADVIHQALQTHQLAPEQAIIIGDTKFDML 168

Query: 180 AGKAAGMEVVAV 191
             +  G++ +A+
Sbjct: 169 GARETGIQKLAI 180

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6 Length = 243

 Score = 93.0 bits (232), Expect = 6e-23
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 14/218 (6%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGK---TPLEEAAIIVEDY 66
            +  DLDGTL+N+    +  + + L                +G       + A       
Sbjct: 25  LIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQ 84

Query: 67  GLPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCHGVPMALASN-SHRAT 120
                  +        F  +         +  P     ++ L   G  +A+ +N   +  
Sbjct: 85  AEKELTEDEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHV 144

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
               I    G +  FS ++G   +   KP P  F     +  + P   L + DS   + A
Sbjct: 145 Q--PILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFA 202

Query: 181 GKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 216
             +AG  VV +            +  D + +   D+  
Sbjct: 203 AHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILK 240

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii} Length = 240

 Score = 91.2 bits (227), Expect = 3e-22
 Identities = 47/233 (20%), Positives = 81/233 (34%), Gaps = 30/233 (12%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYG----------KEW--DGREK-------HKIV 51
             I D+DGT+L+T    +  L     + G          K +   G          ++  
Sbjct: 6   AAIFDMDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAG 65

Query: 52  GKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-----LCKVKALPGANRLIKHLSCH 106
                  A    ++          VN V  +F  +       K    PG   L+K+L   
Sbjct: 66  SSRESLVAFGTKDEQIPEAVTQTEVNRVLEVFKPYYADHCQIKTGPFPGILDLMKNLRQK 125

Query: 107 GVPMALASN-SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP 165
           GV +A+ SN  + A        +  +  SF   +G       KP+PD+  E  K L +  
Sbjct: 126 GVKLAVVSNKPNEAVQVLV---EELFPGSFDFALGEKSGIRRKPAPDMTSECVKVLGVPR 182

Query: 166 SSSLVIEDSVIGVVAGKAAGMEVVAVP--SLPKQTHRYTAADEVINSLLDLRP 216
              + I DS I +   + + M+ +AV          +   A  ++++   L  
Sbjct: 183 DKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEE 235

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} PDB: 1x42_A Length = 234

 Score = 85.5 bits (212), Expect = 3e-20
 Identities = 35/223 (15%), Positives = 73/223 (32%), Gaps = 25/223 (11%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYG------------------KEWDGREKHKIVGK 53
           V  D  GTL + +G     LK      G                  + +           
Sbjct: 5   VFFDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPY--- 61

Query: 54  TPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKAL-PGANRLIKHLSCHGVPMAL 112
            PL +    V          ++    + +      +   L P    ++K L      + +
Sbjct: 62  RPLRDILEEVMRKLAEKYGFKYPENFWEISLRMSQRYGELYPEVVEVLKSLK-GKYHVGM 120

Query: 113 ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172
            ++S      + +    G  + F  I  S+E    KP P IF  A K+  ++   ++ + 
Sbjct: 121 ITDSDTEQAMAFL-DALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVG 179

Query: 173 DSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           D+ +      K  GM  + +    ++   +   D +++ L ++
Sbjct: 180 DNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREV 222

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV} Length = 196

 Score = 83.8 bits (207), Expect = 5e-20
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 90  VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP 149
            +  PGA   +K L   G+P A       A      +           ++ +     G P
Sbjct: 35  AQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAAPV------NDWMIAAPRPTAGWP 88

Query: 150 SPDIFLEAAKRLNMEPSSS-LVIEDSVIGVVAGKAAGMEVVAVP 192
            PD    A   LN+      ++I      + +G  AG+  + + 
Sbjct: 89  QPDACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTIGLA 132

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} Length = 240

 Score = 82.1 bits (203), Expect = 6e-19
 Identities = 41/226 (18%), Positives = 71/226 (31%), Gaps = 26/226 (11%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKE--------------------WDGREKHKI 50
            +  DLD T+        +  +    KY  +                    W    + K+
Sbjct: 7   NLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGEGKV 66

Query: 51  VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC-KVKALPGANRLIKHLSCHGVP 109
             K  L           +              F   +  K   +P A  ++++L+     
Sbjct: 67  -TKEELNRQRFFYPLQAVGVEDEALAERFSEDFFAIIPTKSGLMPHAKEVLEYLA-PQYN 124

Query: 110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169
           + + SN  R     K+    G +  F  I+ S+++   KP P+IF  A      E   SL
Sbjct: 125 LYILSNGFRELQSRKMR-SAGVDRYFKKIILSEDLGVLKPRPEIFHFALSATQSELRESL 183

Query: 170 VIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           +I DS    +      GM         +    +      I+SL +L
Sbjct: 184 MIGDSWEADITGAHGVGMHQAFYNVTERTVFPFQ-PTYHIHSLKEL 228

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A Length = 229

 Score = 81.0 bits (200), Expect = 1e-18
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 36/216 (16%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV----------GKTPLEEA-A 60
           +++DL G L+N D      ++ F  K G +    +               G     E   
Sbjct: 31  LLIDLGGVLINLD--RERCIENFK-KIGFQNIEEKFCTHQLDGIFLQQEKGLITPAEFRD 87

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            I E  G   +  +      S   D       +P     +         + L SN++   
Sbjct: 88  GIREMMGKMVSDKQIDAAWNSFLVD-------IPTYKLDLLLKLREKYVVYLLSNTNDIH 140

Query: 121 IE-----SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV 175
            +     +         + F     S E++  KP P+IF    +   ++P  +  I+DS 
Sbjct: 141 WKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAVTEDAGIDPKETFFIDDSE 200

Query: 176 IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL 211
           I     +  G+           T+   A ++  +  
Sbjct: 201 INCKVAQELGI----------STYTPKAGEDWSHLF 226

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} Length = 234

 Score = 77.2 bits (190), Expect = 3e-17
 Identities = 44/234 (18%), Positives = 83/234 (35%), Gaps = 34/234 (14%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKE--------WDGREKHKIVGKT 54
           K+L+  +  D D TL + +  F EV K +   L  YG                 +I+G  
Sbjct: 5   KELIKVIAFDADDTLWSNEPFFQEVEKQYTDLLKPYGTSKEISAALFQTEMNNLQILGYG 64

Query: 55  P------LEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHG 107
                  + E A+ + +  +     + + ++  +    L   ++ LPG    +K L   G
Sbjct: 65  AKAFTISMVETALQISNGKIA---ADIIRQIVDLGKSLLKMPIELLPGVKETLKTLKETG 121

Query: 108 -VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS 166
              + +A+       E+K+  + G +  F  I    +      +   +L     L + PS
Sbjct: 122 KYKLVVATKGDLLDQENKL-ERSGLSPYFDHIEVMSD-----KTEKEYLRLLSILQIAPS 175

Query: 167 SSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAADEV-----INSLLDL 214
             L++ +S    +    + G   V +P      H  T          +  L DL
Sbjct: 176 ELLMVGNSFKSDIQPVLSLGGYGVHIPFEVMWKHEVTETFAHERLKQVKRLDDL 229

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13 Length = 384

 Score = 78.7 bits (193), Expect = 5e-17
 Identities = 30/245 (12%), Positives = 66/245 (26%), Gaps = 46/245 (18%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEA--------AIIV 63
            +  LD   +  + +++ + +    +           K    T  +E          +  
Sbjct: 133 PLQFLDNVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWYLGSKLYE 192

Query: 64  EDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
           +                + +      ++ +     L+  L   G  + +A+         
Sbjct: 193 DVEK-----KIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVV 247

Query: 124 KISYQHGWNESFSV--IVGSDEVRT-----------GKPSPDIFLEAAKRLN-------- 162
                 G    F    I  + +V             GKP+P  ++ A    N        
Sbjct: 248 PFE-NLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYI 306

Query: 163 ------MEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSL 211
                 +      ++ DS+  +++ +  G   +                   AD VIN L
Sbjct: 307 NKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHL 366

Query: 212 LDLRP 216
            +LR 
Sbjct: 367 GELRG 371

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A Length = 232

 Score = 73.7 bits (181), Expect = 5e-16
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 17/216 (7%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKY---GKEWDGREK-------HKIVGK-TPLEEAA 60
           +  DL GTL +   +     + F  +       W  R+K         ++ +    ++A 
Sbjct: 7   IAFDLYGTLFDVHSVVGRCDEAFPGRGREISALW--RQKQLEYTWLRSLMNRYVNFQQAT 64

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
                +       +      S   D   ++         ++ L   G+ +A+ SN    +
Sbjct: 65  EDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQS 124

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           I++ +S+  G  + F  ++  D V+  KP   ++  A + L ++ S+ L +  +      
Sbjct: 125 IDAVVSH-AGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATG 183

Query: 181 GKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 214
            +  G     +       +       D  + SL  +
Sbjct: 184 ARYFGFPTCWINRTGNVFEEMGQ-TPDWEVTSLRAV 218

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans} Length = 231

 Score = 72.5 bits (177), Expect = 2e-15
 Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 20/215 (9%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR---EKHKIVGKTPLEEAAIIVEDYG 67
             + D D TLL+ D + +++    + ++G +   R       +  +    +    ++ Y 
Sbjct: 13  VFLFDCDNTLLDNDHVLADLRAHMMREFGAQNSARYWEIFETLRTELGYADYLGALQRYR 72

Query: 68  LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY 127
           L   +   +  + S   D+    +  PGA   ++HL   G P  + S+        KI+ 
Sbjct: 73  LEQPRDTRLLLMSSFLIDYPFASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKIA- 130

Query: 128 QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA-GM 186
           + G  +        +         ++ L+            ++++D +  + A K A G 
Sbjct: 131 RSGLWDEV------EGRVLIYIHKELMLDQVMEC-YPARHYVMVDDKLRILAAMKKAWGA 183

Query: 187 EVVAV-------PSLPKQTHRYTAADEVINSLLDL 214
            +  V          PK+   +  AD  +  + DL
Sbjct: 184 RLTTVFPRQGHYAFDPKEISSHPPADVTVERIGDL 218

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A* Length = 240

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 15/215 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYG---KEWDGREKH-------KIVGK-TPLEEAA 60
            + D  GTLL+                      W  R++         ++ +     +  
Sbjct: 17  CVFDAYGTLLDVHSAVMRNADEVGASAEALSMLW--RQRQLEYSWTRTLMHQYADFWQLT 74

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
                + L     E    +         ++ A P A   ++ L   G  +A+ SN +   
Sbjct: 75  DEALTFALRTYHLEDRKGLKDRLMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEM 134

Query: 121 IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA 180
           +++ +      +      + +D+++  KP P I+  A  RL + P+    +  +   +  
Sbjct: 135 LQAALKA-SKLDRVLDSCLSADDLKIYKPDPRIYQFACDRLGVNPNEVCFVSSNAWDLGG 193

Query: 181 GKAAGMEVVAVP-SLPKQTHRYTAADEVINSLLDL 214
               G   V +        + +      +NSL +L
Sbjct: 194 AGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSEL 228

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A* Length = 282

 Score = 71.7 bits (175), Expect = 5e-15
 Identities = 30/230 (13%), Positives = 61/230 (26%), Gaps = 18/230 (7%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTD-GMFSEV---LKTFLV-KYGKEWDG-REKHKIVGKT 54
            A P    +     D+D  L  +   +   +   +  F         +     +    K 
Sbjct: 49  SATPQNPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKE 108

Query: 55  PLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMAL-- 112
                  +V  +          N +          +K       ++  L   G    L  
Sbjct: 109 YGLAIRGLVMFHK---VNALEYNRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWL 165

Query: 113 ---ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS- 168
              A  +H       +     ++          +    KP    F +A K   +    + 
Sbjct: 166 FTNAYKNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAFEKAMKESGLARYENA 225

Query: 169 LVIEDSVIGVVAGKAAGMEVVAV---PSLPKQTHRYTAADEVINSLLDLR 215
             I+DS   +  G   GM+         + +   +      VI+ +L+L 
Sbjct: 226 YFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELP 275

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} Length = 251

 Score = 68.9 bits (168), Expect = 4e-14
 Identities = 32/239 (13%), Positives = 63/239 (26%), Gaps = 32/239 (13%)

Query: 1   MAQPLKKLMSCVILDLDGTLLNTDGMFSEVLKTF---LVKYGKEWDGR------------ 45
           +AQ   + +  V  D D TL  ++  +      F   L  Y    D R            
Sbjct: 5   IAQRDGQAIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRN 64

Query: 46  -EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHL 103
            +      K           +      +   +  +  +    L   V+ + G    +  +
Sbjct: 65  LKIFGYGAKGMTLSMIETAIELTEARIEARDIQRIVEIGRATLQHPVEVIAGVREAVAAI 124

Query: 104 SCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM 163
           +     + L +       E KI  Q G ++ F  I         +  P  +       ++
Sbjct: 125 A-ADYAVVLITKGDLFHQEQKIE-QSGLSDLFPRIEVV-----SEKDPQTYARVLSEFDL 177

Query: 164 EPSSSLVIEDSVI-GVVAGKAAGMEVVAVPSLPKQTHRYTAADEV-------INSLLDL 214
                ++I +S+   V    A G   +  P      H               +      
Sbjct: 178 PAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAADEPRLREVPDPSGW 236

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A Length = 253

 Score = 69.2 bits (169), Expect = 4e-14
 Identities = 40/234 (17%), Positives = 78/234 (33%), Gaps = 33/234 (14%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYG---KEW-----------DGREKHK---IVGKT 54
           V+ D  GTL +   +     + +  +     + W               ++     V + 
Sbjct: 5   VVFDAYGTLFDVQSVADATERAYPGRGEYITQVWRQKQLEYSWLRALMGRYADFWSVTRE 64

Query: 55  PLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALAS 114
            L          GL   +  F+ ++   ++       A      L        +  A+ S
Sbjct: 65  ALAYTL---GTLGLEPDE-SFLADMAQAYNRLTPYPDAAQCLAEL------APLKRAILS 114

Query: 115 NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS 174
           N     +++ ++   G  +SF  ++  D  R  KP PD +    + L + P+  L +  +
Sbjct: 115 NGAPDMLQALVAN-AGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLFVSSN 173

Query: 175 VIGVVAGKAAGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRPEKWGLPP 223
              V   K  G  V  V      +L ++    T A   +   L +R E +   P
Sbjct: 174 GFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A Length = 261

 Score = 68.7 bits (167), Expect = 6e-14
 Identities = 19/136 (13%), Positives = 41/136 (30%), Gaps = 6/136 (4%)

Query: 83  FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY--QHGWNESFSVIVG 140
           F+    K +        ++     G+ + + S+      +    +  +    E       
Sbjct: 122 FTAGRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHF- 180

Query: 141 SDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQT 198
            D     K   + + + A  +    ++ L + D      A + A + V  V  P     T
Sbjct: 181 -DTKIGHKVESESYRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLT 239

Query: 199 HRYTAADEVINSLLDL 214
                   +I S  +L
Sbjct: 240 DDEKTYYSLITSFSEL 255

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes} Length = 189

 Score = 64.1 bits (156), Expect = 8e-13
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 89  KVKALPGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVGSD--- 142
           +V     A   ++ +   G   A+ SN   S    I+  ++   G  + F  I  S+   
Sbjct: 32  EVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLT-NFGIIDYFDFIYASNSEL 90

Query: 143 -EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVV---------AV 191
              +  KP   IF      L ++ + ++++ ++    ++    AG+  +           
Sbjct: 91  QPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQD 150

Query: 192 PSLPKQTHRYTAADEVINSLLDL 214
             LP     +      +  + + 
Sbjct: 151 ERLPLVAPPFVIPVWDLADVPEA 173

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas} Length = 240

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 43/234 (18%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-------------------KHKIVG 52
           +  D  GTL++ +      L+    + GK +   E                    ++ + 
Sbjct: 9   LTFDCYGTLIDWETGIVNALQPLAKRTGKTFTSDELLEVFGRNESPQQTETPGALYQDIL 68

Query: 53  KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMAL 112
           +   +  A   +++GL     E        F   +    A P     +++L      + +
Sbjct: 69  RAVYDRIA---KEWGLEPDAAER-----EEFGTSVKNWPAFPDTVEALQYLK-KHYKLVI 119

Query: 113 ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIF---LEAAKRLNMEPSSSL 169
            SN  R   +   +        F  I+ + +V + KP+P+ F   ++A  +  +E    L
Sbjct: 120 LSNIDRNEFKLSNA---KLGVEFDHIITAQDVGSYKPNPNNFTYMIDALAKAGIEKKDIL 176

Query: 170 VIEDSVIG-VVAGKAAGMEVV--------AVPSLPKQTHRYTAADEVINSLLDL 214
              +S+    +    AG+                     R    D   NS+ ++
Sbjct: 177 HTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPSRMPNVDFRFNSMGEM 230

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A Length = 201

 Score = 54.5 bits (131), Expect = 3e-09
 Identities = 34/205 (16%), Positives = 70/205 (34%), Gaps = 17/205 (8%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           +  D+ GT+L+T  +  E     L +Y        K+    +        I++  G    
Sbjct: 4   LAFDIFGTVLDTSTVIQEFRNKQL-EYTWLLTIMGKYVEFEEITKITLRYILKVRGEESK 62

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
             E +        +    +KA      L +        +   SN     ++  +  ++G 
Sbjct: 63  FDEEL--------NKWKNLKAYEDTKYLKEISEIA--EVYALSNGSINEVKQHLE-RNGL 111

Query: 132 NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
              F  I  ++ V+  KPSP ++      +      + ++  +   V+  K AGM  + V
Sbjct: 112 LRYFKGIFSAESVKEYKPSPKVYKYFLDSIG--AKEAFLVSSNAFDVIGAKNAGMRSIFV 169

Query: 192 --PSLPKQTHRYTAADEVINSLLDL 214
              +           D ++N   +L
Sbjct: 170 NRKNTIVD-PIGGKPDVIVNDFKEL 193

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A Length = 187

 Score = 53.1 bits (127), Expect = 8e-09
 Identities = 24/188 (12%), Positives = 46/188 (24%), Gaps = 46/188 (24%)

Query: 5   LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE 64
           + +L    + DLD TL                     W       +           + +
Sbjct: 23  MARLPKLAVFDLDYTL---------------------WPFWVDTHVDPPFHKSSDGTVRD 61

Query: 65  DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 124
             G                      V+  P    ++K L   GVP A AS +      ++
Sbjct: 62  RRG--------------------QDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQ 101

Query: 125 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
           +         F                  F    ++  +  S  +  +D    +V     
Sbjct: 102 LLELFDLFRYFVHREIYPG-----SKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKL 156

Query: 185 GMEVVAVP 192
           G+  + + 
Sbjct: 157 GVTCIHIQ 164

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A* Length = 555

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 22/205 (10%)

Query: 12  VILDLDGTLL--NTDGMFSEV----------LKTFLVKYGKEWDGREKHKIVGKTPLEEA 59
            + DLDG L      G+              L     K G   +G     + G+  L + 
Sbjct: 6   AVFDLDGVLALPAVFGVLGRTEEALALPRGLLNDAFQKGGP--EGATTRLMKGEITLSQW 63

Query: 60  AIIVEDYGLPCAKHEFVN-----EVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALAS 114
             ++E+    C++   V       +  +F   +   K      +    L   G   A+ +
Sbjct: 64  IPLMEENCRKCSETAKVCLPKNFSIKEIFDKAISARKINRPMLQAALMLRKKGFTTAILT 123

Query: 115 NS---HRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171
           N+    RA  +            F  ++ S +V   KP P I+      L   PS  + +
Sbjct: 124 NTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSEVVFL 183

Query: 172 EDSVIGVVAGKAAGMEVVAVPSLPK 196
           +D    +   +  GM  + V     
Sbjct: 184 DDIGANLKPARDLGMVTILVQDTDT 208

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* Length = 211

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGME-VVAVPS-LPKQTHRYTAAD 205
           KP P + L A   L+++ ++S ++ D +  + A  AA +   V V +  P       AAD
Sbjct: 131 KPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAAD 190

Query: 206 EVINSLLDL 214
            V+NSL DL
Sbjct: 191 WVLNSLADL 199

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} Length = 179

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS----LPKQTHRYTA 203
           KP P ++ + A+R +++ +    + DS+  + A   AG     V +              
Sbjct: 101 KPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPE 160

Query: 204 ADEVINSLLD 213
              V   L  
Sbjct: 161 GTRVCEDLAA 170

>1n08_A Putative riboflavin kinase; phophoryl transferases, flavin cofactors, metal binding; HET: ADP; 1.60A {Schizosaccharomyces pombe} SCOP: b.43.5.1 PDB: 1n05_A* 1n07_A* 1n06_A* Length = 163

 Score = 47.6 bits (114), Expect = 4e-07
 Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 7/49 (14%)

Query: 210 SLLDLRPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPT 258
           +L + RPE  G        E      P    G VV G GRGSK LGIPT
Sbjct: 4   NLEEKRPEIVG-------PEKVQSPYPIRFEGKVVHGFGRGSKELGIPT 45

>3bnw_A Riboflavin kinase, putative; APO structure, structural genomics, structural genomics of P protozoa consortium, SGPP, transferase; 2.40A {Trypanosoma brucei} Length = 181

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 224 FQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPT 258
               +  T   +P+++ G VV G GRG   LG PT
Sbjct: 5   HHHHMRQTGSFQPFFLRGKVVHGKGRGGSQLGFPT 39

>1nb0_A Hypothetical protein FLJ11149; beta barrel, transferase; HET: ADP; 1.70A {Homo sapiens} SCOP: b.43.5.1 PDB: 1nb9_A* 1p4m_A* 1q9s_A* Length = 147

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 236 PWYIGGPVVKGLGRGSKVLGIPT 258
           P++  G VV+G GRGSK LGIPT
Sbjct: 4   PYFCRGQVVRGFGRGSKQLGIPT 26

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A Length = 259

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 15/78 (19%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 205
           GKP    FLEA +  +  P  +++I D     V   +  GM  + V     +T +Y AAD
Sbjct: 178 GKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILV-----KTGKYKAAD 232

Query: 206 E---------VINSLLDL 214
           E            S    
Sbjct: 233 EEKINPPPYLTCESFPHA 250

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens} Length = 271

 Score = 44.1 bits (105), Expect = 2e-05
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 15/78 (19%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPSLPKQTHRYTAAD 205
           GKPSP+ F  A + + +E   +++I D ++G V   +  GM  + V     +T ++  +D
Sbjct: 189 GKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQV-----RTGKFRPSD 243

Query: 206 E---------VINSLLDL 214
           E          +++L + 
Sbjct: 244 EHHPEVKADGYVDNLAEA 261

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19 Length = 218

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-----PSLPKQTHRYT 202
           KP+P + +EA KRL ++   SL++ D +  + AGK AG+    +        P    R  
Sbjct: 137 KPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPL 196

Query: 203 AADEVINSLLD 213
                +  LL 
Sbjct: 197 RDSSELGDLLA 207

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22 Length = 253

 Score = 42.5 bits (99), Expect = 5e-05
 Identities = 8/67 (11%), Positives = 19/67 (28%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV 207
           K     +    + +  + S  L + D+ + + A    G+                   +V
Sbjct: 187 KTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQV 246

Query: 208 INSLLDL 214
             +   L
Sbjct: 247 YKNFETL 253

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14 Length = 264

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 15/81 (18%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 196
           GKP   I   A   L +E    +++ D+    I   +G   G++ + V S       +P 
Sbjct: 182 GKPKAIIMERAIAHLGVEKEQVIMVGDNYETDI--QSGIQNGIDSLLVTSGFTPKSAVPT 239

Query: 197 QTHRYTAADEVINSLLDLRPE 217
                     V++SL +   E
Sbjct: 240 LPTP---PTYVVDSLDEWTFE 257

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* Length = 176

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGM 186
           KP   +         M+ ++S VI D    +   +  G+
Sbjct: 116 KPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGI 154

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} Length = 266

 Score = 39.0 bits (92), Expect = 7e-04
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 15/81 (18%)

Query: 147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV---IGVVAGKAAGMEVVAVPS-------LPK 196
           GKP   I  +A + L  + S +L++ D+    I  +AG  AGM+ + V +       +  
Sbjct: 182 GKPESIIMEQAMRVLGTDVSETLMVGDNYATDI--MAGINAGMDTLLVHTGVTKREHMTD 239

Query: 197 QTHRYTAADEVINSLLDLRPE 217
              +       I+SL +  P 
Sbjct: 240 DMEK---PTHAIDSLTEWIPY 257

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	100.0
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	100.0
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	100.0
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	100.0
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	100.0
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	100.0
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	100.0
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	100.0
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	100.0
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	100.0
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	100.0
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	100.0
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	100.0
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	100.0
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	100.0
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	100.0
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	100.0
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	100.0
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	100.0
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.98
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.98
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.98
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.97
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.97
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.97
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.97
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.97
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.97
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.97
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.97
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.97
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.97
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.97
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.97
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.97
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.96
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.96
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.96
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.96
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.96
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.96
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.96
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.96
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.96
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.96
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.96
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.96
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.96
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.96
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.95
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.95
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.95
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.95
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.95
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.94
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.94
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.94
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.94
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.94
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.94
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.93
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.93
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.92
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.92
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.92
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.92
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.9
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.9
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.9
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.9
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.9
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.9
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.89
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.89
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.87
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.87
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.87
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.87
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.87
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.86
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.86
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.85
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	99.85
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.85
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.85
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.84
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	99.84
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	99.83
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.83
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.83
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.83
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.83
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.83
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.82
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.82
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.82
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.82
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.82
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.81
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.81
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.81
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.79
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.78
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	99.78
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	99.65
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	99.77
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.77
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.76
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	99.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.76
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	99.75
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	99.71
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	99.71
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	99.7
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.69
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	99.68
3dao_A	283	Putative phosphatse; structural genomics, joint ce	99.67
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	99.67
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.64
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.61
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	99.6
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	99.59
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	99.58
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	99.57
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	99.55
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.49
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	99.48
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	99.45
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	99.45
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	99.42
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	99.37
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	99.34
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	99.33
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	99.26
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	99.26
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	99.24
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	99.13
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.12
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	99.09
4gxt_A	385	A conserved functionally unknown protein; structur	99.06
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.01
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	99.0
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	98.95
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	98.77
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	98.77
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	98.76
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	98.71
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.64
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	98.57
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	98.54
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	98.49
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	98.46
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	98.22
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	98.15
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	98.1
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	97.99
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	97.9
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	97.88
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	97.87
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	97.82
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	97.21
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	97.03
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	96.82
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	96.45
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	96.12
3geb_A	274	EYES absent homolog 2; hydrolase, activator, alter	96.04
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	95.83
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	94.78
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	93.98
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	93.97
2x0k_A	338	Riboflavin biosynthesis protein RIBF; riboflavin k	93.87
1mrz_A	293	Riboflavin kinase/FMN adenylyltransferase; rossman	91.73
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	91.69
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	90.37
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	89.69
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	89.26
2q5c_A	196	NTRC family transcriptional regulator; structural	89.11
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	88.58
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	86.48
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	85.7
2pju_A	225	Propionate catabolism operon regulatory protein; s	84.45
3op1_A	308	Macrolide-efflux protein; structural genomics, PSI	84.28
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	84.0
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	83.63
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	83.36
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	80.52
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	80.19

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=237.95  Aligned_cols=221  Identities=40%  Similarity=0.611  Sum_probs=197.9

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      +++++|+|+||+||||+|+...+..++.+++++++............+.......+.+++.++......++...+.+.+.
T Consensus        26 ~~~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (250)
T 3l5k_A           26 PPQPVTHLIFDMDGLLLDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKKALEAAQIIIDVLQLPMSKEELVEESQTKLK  105 (250)
T ss_dssp             CCCCCSEEEEETBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTCCHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             cccCCcEEEEcCCCCcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999888888888888999888899999999888777777777777777


Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc--ccCCCCCChHHHHHHHHHcC
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD--EVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~--~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .......++|++.++|+.|++.|++++++||+....+...+.+..++..+|+.+++++  ..+..||+++.++.+++++|
T Consensus       106 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~~~f~~~~~~~~~~~~~~Kp~~~~~~~~~~~lg  185 (250)
T 3l5k_A          106 EVFPTAALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACAKRFS  185 (250)
T ss_dssp             HHGGGCCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHHHTSS
T ss_pred             HHhccCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHHhheeeEEecchhhccCCCCChHHHHHHHHHcC
Confidence            7677788999999999999999999999999998877777734468888999999999  89999999999999999999


Q ss_pred             CCC--CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCCCCCc
Q 024956          163 MEP--SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQ  225 (260)
Q Consensus       163 ~~~--~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~~  225 (260)
                      ++|  +++++|||+.+|+.+|+.+|+.+++++++......+..++++++++.||.+.+.++++++
T Consensus       186 i~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~~~~~ad~v~~sl~el~~~l~~l~~~~  250 (250)
T 3l5k_A          186 PPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDGNLSRDLTTKATLVLNSLQDFQPELFGLPSYE  250 (250)
T ss_dssp             SCCCGGGEEEEESSHHHHHHHHHTTCEEEECCCTTSCGGGSTTSSEECSCGGGCCGGGGTCCCCC
T ss_pred             CCCCcceEEEEeCCHHHHHHHHHcCCEEEEEcCCCCchhhcccccEeecCHHHhhHHHhcCCCCC
Confidence            998  999999999999999999999999999977666678899999999999999999887653

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=100.00  E-value=2.7e-34  Score=223.62  Aligned_cols=208  Identities=25%  Similarity=0.403  Sum_probs=175.3

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh-
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL-   87 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   87 (260)
                      +|+|+||+||||+|+...+..++.++++++|.+.+.+......+....................+.+...+.+.+.... 
T Consensus         1 IkAViFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (216)
T 3kbb_A            1 MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEEKKRVFS   80 (216)
T ss_dssp             CCEEEEESBTTTBCCGGGHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhccchhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHH
Confidence            6899999999999998888899999999999998888888899998888888888888777666666666655554433 


Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ...+++||+.++++.|++.|++++++||+....+...+ +.+|+..+|+.++++++++..||+|+.|+.+++++|++|++
T Consensus        81 ~~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l-~~~~l~~~fd~~~~~~~~~~~KP~p~~~~~a~~~lg~~p~e  159 (216)
T 3kbb_A           81 ELLKENPGVREALEFVKSKRIKLALATSTPQREALERL-RRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEK  159 (216)
T ss_dssp             HHCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHHHTCCGGG
T ss_pred             HhcccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHH-HhcCCCccccccccccccCCCcccHHHHHHHHHhhCCCccc
Confidence            35788999999999999999999999999999999888 88999999999999999999999999999999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEE-EcCCCCcccc-ccccchhcccccccccc
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVA-VPSLPKQTHR-YTAADEVINSLLDLRPE  217 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~-~~~~~~~~~~-~~~~~~~v~~~~~l~~~  217 (260)
                      ++||||+.+|+.+|+++|+.+|+ +.++....+. .......+.+..++.+.
T Consensus       160 ~l~VgDs~~Di~aA~~aG~~~i~~v~~g~~~~~~l~~~~~~~i~~~~eli~~  211 (216)
T 3kbb_A          160 VVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNV  211 (216)
T ss_dssp             EEEEECSHHHHHHHHHTTCCCEEEECCSSSCCHHHHHTTCSEEECGGGHHHH
T ss_pred             eEEEecCHHHHHHHHHcCCcEEEEecCCCCCHHHHHhCCCcEECCHHHHHHH
Confidence            99999999999999999999985 6665443332 33333334455555443

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=100.00  E-value=1.3e-33  Score=223.91  Aligned_cols=211  Identities=21%  Similarity=0.288  Sum_probs=170.5

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC--CHHHHH---HHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC--AKHEFV---NEV   79 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~---~~~   79 (260)
                      |+|++|+|+||+||||+|+...+..++.++++++|.+++.+......|.+..+.++.++...+...  ...+..   ...
T Consensus         1 M~MkiKaViFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T 4g9b_A            1 MVMKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRK   80 (243)
T ss_dssp             -CCCCCEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCTTGGGGGTTCCHHHHHHHHHHHTTCGGGCCHHHHHHHHHHH
T ss_pred             CCccCcEEEEcCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence            566899999999999999999999999999999999988888888899999888888888776542  222111   111


Q ss_pred             HHHHHhhh---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956           80 YSMFSDHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        80 ~~~~~~~~---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                      ...+....   ....++||+.++++.|+++|++++++|++..  ....+ +.+|+..+|+.++++++++..||+|+.|..
T Consensus        81 ~~~~~~~~~~~~~~~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l-~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~  157 (243)
T 4g9b_A           81 NLLYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVSLN--APTIL-AALELREFFTFCADASQLKNSKPDPEIFLA  157 (243)
T ss_dssp             HHHHHHHHHTCCGGGBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHH-HHTTCGGGCSEECCGGGCSSCTTSTHHHHH
T ss_pred             HHHHHHHHHhcccccccccHHHHHHhhhcccccceecccccc--hhhhh-hhhhhccccccccccccccCCCCcHHHHHH
Confidence            11222222   2346889999999999999999999998754  34567 889999999999999999999999999999


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      +++++|++|++|+||||+.+|+.+|+++|+.+|+++++....+.  ...++..++++.++.+.+
T Consensus       158 a~~~lg~~p~e~l~VgDs~~di~aA~~aG~~~I~V~~g~~~ad~~~~~~~~l~~~~l~~~~~~l  221 (243)
T 4g9b_A          158 ACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNV  221 (243)
T ss_dssp             HHHHHTSCGGGEEEEESSHHHHHHHHHHTCEEEEESTTCCSCSEEESSGGGCCHHHHHHHHHHH
T ss_pred             HHHHcCCChHHEEEEcCCHHHHHHHHHcCCEEEEECCCCCcHHHhcCChhhcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986554333  445666666766665443

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=100.00  E-value=2.4e-33  Score=217.05  Aligned_cols=210  Identities=25%  Similarity=0.367  Sum_probs=181.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      +|+|+|+||+||||+++...+...+.+++++++.......+....+.......+.+....+.......+...+...+...
T Consensus         3 ~m~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (214)
T 3e58_A            3 AMVEAIIFDMDGVLFDTEKYYYDRRASFLGQKGISIDHLPPSFFIGGNTKQVWENILRDEYDKWDVSTLQEEYNTYKQNN   82 (214)
T ss_dssp             -CCCEEEEESBTTTBCCHHHHHHHHHHHHHHTTCCCTTSCHHHHTTSCGGGCHHHHHGGGGGGSCHHHHHHHHHHHHHHS
T ss_pred             ccccEEEEcCCCCccccHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999988877777888888877777778777766666666666666665544


Q ss_pred             hc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           87 LC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        87 ~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ..  ...++|++.++|++|++.|++++++|++....++..+ +.+++..+|+.+++++..+..||++..++.+++++|++
T Consensus        83 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~  161 (214)
T 3e58_A           83 PLPYKELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRAL-EENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQLNVQ  161 (214)
T ss_dssp             CCCHHHHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHHHTCC
T ss_pred             hcccCCCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHH-HHcCcHhheeeEeecccccCCCCChHHHHHHHHHcCCC
Confidence            32  3478999999999999999999999999999999888 88999999999999999999999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      |+++++|||+.+|+.+|+.+|+.+++++++.... ....++++++++.+|.+.+
T Consensus       162 ~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~-~~~~a~~~~~~~~el~~~i  214 (214)
T 3e58_A          162 ASRALIIEDSEKGIAAGVAADVEVWAIRDNEFGM-DQSAAKGLLDSLTDVLDLI  214 (214)
T ss_dssp             GGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCC-CCTTSSEEESSGGGGGGGC
T ss_pred             hHHeEEEeccHhhHHHHHHCCCEEEEECCCCccc-hhccHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999843322 2378999999999987653

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=100.00  E-value=4.7e-33  Score=219.39  Aligned_cols=213  Identities=26%  Similarity=0.311  Sum_probs=177.9

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      .+++|+|+||+||||+++...+...+.+++++++.......+....+......++.+............+...+.+.+..
T Consensus        16 ~~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (237)
T 4ex6_A           16 AAADRGVILDLDGTLADTPAAIATITAEVLAAMGTAVSRGAILSTVGRPLPASLAGLLGVPVEDPRVAEATEEYGRRFGA   95 (237)
T ss_dssp             -CCCEEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEcCCCCCcCCHHHHHHHHHHHHHHcCCCCCHHHHHHhcCccHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999996667777778888887777766654432222233344444444444


Q ss_pred             hh---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           86 HL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        86 ~~---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .+   ....++|++.++|+.|++.|++++++|++....++..+ +.+|+..+|+.+++++.++..||+++.++.+++++|
T Consensus        96 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lg  174 (237)
T 4ex6_A           96 HVRAAGPRLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIA-ELTGLDTRLTVIAGDDSVERGKPHPDMALHVARGLG  174 (237)
T ss_dssp             HHHHHGGGGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHH-HHHTGGGTCSEEECTTTSSSCTTSSHHHHHHHHHHT
T ss_pred             hcccccCCccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHH-HHcCchhheeeEEeCCCCCCCCCCHHHHHHHHHHcC
Confidence            43   55789999999999999999999999999999888888 889999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccc-cccchhcccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRY-TAADEVINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~-~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|+++++|||+.||+.||+.+|+.++++.++... .... ..++++++++.||.+.+.
T Consensus       175 ~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el~~~l~  233 (237)
T 4ex6_A          175 IPPERCVVIGDGVPDAEMGRAAGMTVIGVSYGVSGPDELMRAGADTVVDSFPAAVTAVL  233 (237)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCSEEESSHHHHHHHHH
T ss_pred             CCHHHeEEEcCCHHHHHHHHHCCCeEEEEecCCCCHHHHHhcCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999999986544 3333 379999999999987764

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=100.00  E-value=9.3e-33  Score=216.86  Aligned_cols=215  Identities=22%  Similarity=0.219  Sum_probs=179.1

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHH---HHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVN---EVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   82 (260)
                      |+++|+|+||+||||+++...+...+.+++++++.......+....+......++.++..++...+...+..   .+.+.
T Consensus         3 ~~~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (233)
T 3s6j_A            3 LRPQTSFIFDLDGTLTDSVYQNVAAWKEALDAENIPLAMWRIHRKIGMSGGLMLKSLSRETGMSITDEQAERLSEKHAQA   82 (233)
T ss_dssp             --CCCEEEECCBTTTEECHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSCHHHHHHHHHHC----CCHHHHHHHHHHHHHH
T ss_pred             CCcCcEEEEcCCCccccChHHHHHHHHHHHHHcCCCCCHHHHHHHcCCcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999998888778888888888888888887776655444332   22233


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      +........++|++.++|+.|++.|++++++|++....+...+ +.+++..+|+.+++++..+..||++..++.+++++|
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l~  161 (233)
T 3s6j_A           83 YERLQHQIIALPGAVELLETLDKENLKWCIATSGGIDTATINL-KALKLDINKINIVTRDDVSYGKPDPDLFLAAAKKIG  161 (233)
T ss_dssp             HHHTGGGCEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHHTT
T ss_pred             HHHhhccCccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHH-HhcchhhhhheeeccccCCCCCCChHHHHHHHHHhC
Confidence            3333445789999999999999999999999999999888888 889999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-ccc-cccchhccccccccccccCC
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-HRY-TAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-~~~-~~~~~~v~~~~~l~~~~~~l  221 (260)
                      ++|+++++|||+.+|+.+|+.+|+.++++.++.... ... ..++++++++.||.+.+.+.
T Consensus       162 ~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~l~~~~ad~v~~~~~el~~~l~~~  222 (233)
T 3s6j_A          162 APIDECLVIGDAIWDMLAARRCKATGVGLLSGGYDIGELERAGALRVYEDPLDLLNHLDEI  222 (233)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEEGGGSCCHHHHHHTTCSEEESSHHHHHHTGGGT
T ss_pred             CCHHHEEEEeCCHHhHHHHHHCCCEEEEEeCCCCchHhHHhcCCCEEECCHHHHHHHHHHH
Confidence            999999999999999999999999999998853333 333 34899999999999887644

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=100.00  E-value=4.8e-33  Score=215.86  Aligned_cols=202  Identities=16%  Similarity=0.238  Sum_probs=160.4

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   84 (260)
                      |++|+|+||+||||+|+...+..++.++++++|.... ...+....|......+.    .. +.. ...++.+.+.+.+.
T Consensus         2 M~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~   76 (210)
T 2ah5_A            2 TSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFA----TC-LSKDQISEAVQIYRSYYK   76 (210)
T ss_dssp             TTCCEEEECSBTTTEECHHHHHHHHHHHHHHHTCCCCCHHHHHHTSSSCHHHHHH----TT-SCGGGHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHcCccHHHHHH----HH-cCHHHHHHHHHHHHHHHH
Confidence            3589999999999999999888999999999987653 44555666665443332    22 221 12334444444443


Q ss_pred             hh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      .. .....++||+.++|+.|++ |++++++||+....+...+ +.+|+..+|+.+++++  +..||+|+.|..+++++|+
T Consensus        77 ~~~~~~~~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l-~~~gl~~~f~~i~~~~--~~~Kp~p~~~~~~~~~lg~  152 (210)
T 2ah5_A           77 AKGIYEAQLFPQIIDLLEELSS-SYPLYITTTKDTSTAQDMA-KNLEIHHFFDGIYGSS--PEAPHKADVIHQALQTHQL  152 (210)
T ss_dssp             HTGGGSCEECTTHHHHHHHHHT-TSCEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEEC--SSCCSHHHHHHHHHHHTTC
T ss_pred             HhccCCCCCCCCHHHHHHHHHc-CCeEEEEeCCCHHHHHHHH-HhcCchhheeeeecCC--CCCCCChHHHHHHHHHcCC
Confidence            32 3346789999999999999 9999999999998888888 8899999999999887  7899999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-c-ccccchhcccccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-R-YTAADEVINSLLDLRPE  217 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~-~~~~~~~v~~~~~l~~~  217 (260)
                      +|++|++|||+.+|+.+|+.+|+.++++.++..... . ...++++++++.++...
T Consensus       153 ~p~~~~~vgDs~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~a~~v~~~~~el~~~  208 (210)
T 2ah5_A          153 APEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEVLAY  208 (210)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHHHHH
T ss_pred             CcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEECCHHHHHHH
Confidence            999999999999999999999999999998654332 2 24688999999988654

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=100.00  E-value=5.7e-33  Score=219.96  Aligned_cols=213  Identities=23%  Similarity=0.340  Sum_probs=176.1

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHH-hCCCCCHHHHHHHHHHHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED-YGLPCAKHEFVNEVYSMF   83 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (260)
                      +|+++|+|+||+||||+++...+...+.++++++|............+......+..++.. ++...+.+.+...+....
T Consensus        20 ~m~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (243)
T 3qxg_A           20 MRKKLKAVLFDMDGVLFNSMPYHSEAWHQVMKTHGLDLSREEAYMHEGRTGASTINIVFQRELGKEATQEEIESIYHEKS   99 (243)
T ss_dssp             --CCCCEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHTTTSCHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH
T ss_pred             ccccCCEEEEcCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999988887777777788777777666654 666655555433332221


Q ss_pred             Hh--hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEeccccCCCCCChHHHHHHHH
Q 024956           84 SD--HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        84 ~~--~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ..  ......++|++.++|+.|++.|++++++||+....+...+ +. ++..+|  +.+++++..+..||++++++.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~-~l~~~f~~d~i~~~~~~~~~kp~~~~~~~~~~  177 (243)
T 3qxg_A          100 ILFNSYPEAERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERL-EH-NFPGMFHKELMVTAFDVKYGKPNPEPYLMALK  177 (243)
T ss_dssp             HHHHTSSCCCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTH-HH-HSTTTCCGGGEECTTTCSSCTTSSHHHHHHHH
T ss_pred             HHHHhcccCCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHH-HH-hHHHhcCcceEEeHHhCCCCCCChHHHHHHHH
Confidence            11  1234778999999999999999999999999988888788 66 999999  889999999999999999999999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccccc
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|++|+++++|||+.+|+.||+.+|+.++++.++......  ...++++++++.||.+.+.
T Consensus       178 ~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~s~~el~~~l~  239 (243)
T 3qxg_A          178 KGGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTGPLDGQVLLDAGADLLFPSMQTLCDSWD  239 (243)
T ss_dssp             HTTCCGGGEEEEECSHHHHHHHHHTTCEEEEECCSSSCHHHHHHTTCSEEESCHHHHHHHHH
T ss_pred             HcCCCHHHeEEEeCCHHHHHHHHHCCCEEEEEeCCCCCHHHHHhcCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999999999986543332  3468999999999987664

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=100.00  E-value=4.5e-32  Score=215.95  Aligned_cols=203  Identities=24%  Similarity=0.377  Sum_probs=166.1

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCC--HHH---HHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA--KHE---FVNEVY   80 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~   80 (260)
                      ..|+|+|+||+||||+|+...+..++.++++++|.+++.+......+....+..+.+.........  ...   +.+...
T Consensus        23 ~~MIKaViFDlDGTLvDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (250)
T 4gib_A           23 NAMIEAFIFDLDGVITDTAYYHYMAWRKLAHKVGIDIDTKFNESLKGISRMESLDRILEFGNKKYSFSEEEKVRMAEEKN  102 (250)
T ss_dssp             -CCCCEEEECTBTTTBCCHHHHHHHHHHHHHTTTCCCCTTGGGGTTTCCHHHHHHHHHHHTTCTTTSCHHHHHHHHHHHH
T ss_pred             cchhheeeecCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCcchHHHHHHhhhhhcCCCCCCHHHHHHHHHHHH
Confidence            347899999999999999999999999999999998888888888888888888877776654422  111   222223


Q ss_pred             HHHHhhh---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHH
Q 024956           81 SMFSDHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        81 ~~~~~~~---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~  157 (260)
                      ..+....   ....++|++.++++.|++.|+++++.|++..  ....+ +.+|+..+|+.++++++++..||+|+.|..+
T Consensus       103 ~~~~~~~~~~~~~~~~p~~~~ll~~Lk~~g~~i~i~~~~~~--~~~~L-~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a  179 (250)
T 4gib_A          103 NYYVSLIDEITSNDILPGIESLLIDVKSNNIKIGLSSASKN--AINVL-NHLGISDKFDFIADAGKCKNNKPHPEIFLMS  179 (250)
T ss_dssp             HHHHHHHTTCCGGGSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHH-HHHTCGGGCSEECCGGGCCSCTTSSHHHHHH
T ss_pred             HHHHHHHhhccccccchhHHHHHHHHHhcccccccccccch--hhhHh-hhcccccccceeecccccCCCCCcHHHHHHH
Confidence            3333222   3456899999999999999999988776543  45577 8899999999999999999999999999999


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      ++++|++|++|+||||+++|+.+|+++|+.+|++...    .....|+++++++.||.
T Consensus       180 ~~~lg~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~~----~~~~~ad~vi~~l~eL~  233 (250)
T 4gib_A          180 AKGLNVNPQNCIGIEDASAGIDAINSANMFSVGVGNY----ENLKKANLVVDSTNQLK  233 (250)
T ss_dssp             HHHHTCCGGGEEEEESSHHHHHHHHHTTCEEEEESCT----TTTTTSSEEESSGGGCC
T ss_pred             HHHhCCChHHeEEECCCHHHHHHHHHcCCEEEEECCh----hHhccCCEEECChHhCC
Confidence            9999999999999999999999999999999999652    22346899999999984

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=100.00  E-value=3.4e-32  Score=212.81  Aligned_cols=206  Identities=22%  Similarity=0.282  Sum_probs=171.7

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+|+||+||||+|+...+..++.++++++|.+ .+.+.+....|......++.++..    ...+++.+.+.+.+...
T Consensus         2 ~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~   77 (222)
T 2nyv_A            2 SLRVILFDLDGTLIDSAKDIALALEKTLKELGLEEYYPDNVTKYIGGGVRALLEKVLKD----KFREEYVEVFRKHYLEN   77 (222)
T ss_dssp             EECEEEECTBTTTEECHHHHHHHHHHHHHHTTCGGGCCSCGGGGCSSCHHHHHHHHHGG----GCCTHHHHHHHHHHHHC
T ss_pred             CCCEEEECCCCcCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCcCHHHHHHHHhCh----HHHHHHHHHHHHHHHHh
Confidence            4789999999999999998988999999998876 455566677787776666665431    12234445555555443


Q ss_pred             -hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           87 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        87 -~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                       .....++|++.++|+.|++.|++++++||+....+...+ +.+|+..+|+.++++++.+..||+++.+..+++++|++|
T Consensus        78 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~  156 (222)
T 2nyv_A           78 PVVYTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKIL-DILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEILGEEP  156 (222)
T ss_dssp             SCSSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTTSSCTTCCTTHHHHHHHHHHTCCG
T ss_pred             ccccCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCHHHheEEEecCcCCCCCCChHHHHHHHHHhCCCc
Confidence             345788999999999999999999999999998888888 889999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +++++|||+.+|+.+|+.+|+.++++.++...... ..++++++++.++...+.
T Consensus       157 ~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~-~~~~~~~~~~~el~~~l~  209 (222)
T 2nyv_A          157 EKALIVGDTDADIEAGKRAGTKTALALWGYVKLNS-QIPDFTLSRPSDLVKLMD  209 (222)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEEETTSSCSCCC-CCCSEEESSTTHHHHHHH
T ss_pred             hhEEEECCCHHHHHHHHHCCCeEEEEcCCCCCccc-cCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999886544333 678899999999887764

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=100.00  E-value=5.9e-32  Score=212.93  Aligned_cols=212  Identities=18%  Similarity=0.186  Sum_probs=171.1

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhcc------------CC-CH----HHHHHHHHHHhC
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIV------------GK-TP----LEEAAIIVEDYG   67 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------g~-~~----~~~~~~~~~~~~   67 (260)
                      ||+++|+|+||+||||+|+...+..++.++++++|..........+.            +. ..    ...+..+++.++
T Consensus         3 ~mm~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (238)
T 3ed5_A            3 AMKRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLTNDMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYG   82 (238)
T ss_dssp             -CCCCCEEEECCBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTT
T ss_pred             ccccCCEEEEcCcCcCcCCchhHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcC
Confidence            56679999999999999999999999999999998876654332211            11 11    112345556666


Q ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC
Q 024956           68 LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG  147 (260)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~  147 (260)
                      .+.....+...+...+   .....++|++.++|+.|++. ++++++||+....+...+ +.+++..+|+.+++++..+..
T Consensus        83 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~  157 (238)
T 3ed5_A           83 YEADGALLEQKYRRFL---EEGHQLIDGAFDLISNLQQQ-FDLYIVTNGVSHTQYKRL-RDSGLFPFFKDIFVSEDTGFQ  157 (238)
T ss_dssp             CCCCHHHHHHHHHHHH---TTCCCBCTTHHHHHHHHHTT-SEEEEEECSCHHHHHHHH-HHTTCGGGCSEEEEGGGTTSC
T ss_pred             CCCcHHHHHHHHHHHH---HhcCCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHH-HHcChHhhhheEEEecccCCC
Confidence            6654444333332222   12478899999999999999 999999999999888888 888999999999999999999


Q ss_pred             CCChHHHHHHHHHcC-CCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCC
Q 024956          148 KPSPDIFLEAAKRLN-MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       148 kp~~~~~~~~l~~l~-~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      ||++..++.+++++| ++|+++++|||+. +|+.+|+.+|+.+++++++......+..++++++++.||.+.+...
T Consensus       158 kp~~~~~~~~~~~~g~~~~~~~i~vGD~~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~ad~v~~~~~el~~~l~~~  233 (238)
T 3ed5_A          158 KPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILNIE  233 (238)
T ss_dssp             TTCHHHHHHHHHTSTTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCCCTTCCCCSEEESSGGGHHHHHTCC
T ss_pred             CCChHHHHHHHHHcCCCChhHeEEECCCcHHHHHHHHHCCCEEEEECCCCCCCcccCCCCeEECCHHHHHHHHHhh
Confidence            999999999999999 9999999999998 9999999999999999987555556778999999999999887654

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=100.00  E-value=4.1e-32  Score=212.38  Aligned_cols=211  Identities=19%  Similarity=0.207  Sum_probs=172.0

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC-ChhhhhhccCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCA-KHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   84 (260)
                      +++|+|+||+||||+|+...+...+.+++++++... ....+....|......+...+   ++... .......+.+.+.
T Consensus         2 ~m~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~   78 (226)
T 3mc1_A            2 SLYNYVLFDLDGTLTDSAEGITKSVKYSLNKFDIQVEDLSSLNKFVGPPLKTSFMEYY---NFDEETATVAIDYYRDYFK   78 (226)
T ss_dssp             CCCCEEEECSBTTTBCCHHHHHHHHHHHHHTTTCCCSCGGGGGGGSSSCHHHHHHHHH---CCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCcCHHHHHHHHh---CCCHHHHHHHHHHHHHHHH
Confidence            458999999999999999989999999999998774 345667777877665554443   43311 1122222333332


Q ss_pred             h-hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 D-HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~-~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      . ......++|++.++|+.|++.|++++++|++....+...+ +.+++..+|+.+++++..+..||++..++.+++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~lgi  157 (226)
T 3mc1_A           79 AKGMFENKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQIL-EHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMESLNI  157 (226)
T ss_dssp             TTGGGSCCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHHHTC
T ss_pred             HhCcccCccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHHhCc
Confidence            2 1234689999999999999999999999999999888888 8899999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccccCC
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +|+++++|||+.||+.||+.+|+.++++.++......  +..++++++++.||.+++.+.
T Consensus       158 ~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~s~~el~~~~~~~  217 (226)
T 3mc1_A          158 KSDDAIMIGDREYDVIGALKNNLPSIGVTYGFGSYEELKNAGANYIVNSVDELHKKILEL  217 (226)
T ss_dssp             CGGGEEEEESSHHHHHHHHTTTCCEEEESSSSSCHHHHHHHTCSEEESSHHHHHHHHHTC
T ss_pred             CcccEEEECCCHHHHHHHHHCCCCEEEEccCCCCHHHHHHcCCCEEECCHHHHHHHHHHH
Confidence            9999999999999999999999999999986554443  478999999999998887644

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=100.00  E-value=8.9e-32  Score=213.18  Aligned_cols=211  Identities=22%  Similarity=0.372  Sum_probs=173.8

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED-YGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   84 (260)
                      ++++|+|+||+||||+++...+...+.++++++|............+......+..++.. ++...+.+.+...+.. +.
T Consensus        20 ~~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   98 (247)
T 3dv9_A           20 SIDLKAVLFDMDGVLFDSMPNHAESWHKIMKRFGFGLSREEAYMHEGRTGASTINIVSRRERGHDATEEEIKAIYQA-KT   98 (247)
T ss_dssp             CCCCCEEEEESBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHTTTSCHHHHHHHHHHHHHSSCCCHHHHHHHHHH-HH
T ss_pred             CCCCCEEEECCCCccCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCChHHHHHHHHHHhcCCCCCHHHHHHHHHH-HH
Confidence            456899999999999999999999999999999988877777777788777777666554 6666555554333322 22


Q ss_pred             hhh---ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEeccccCCCCCChHHHHHHHH
Q 024956           85 DHL---CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        85 ~~~---~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ..+   ....++|++.++|+.|++.|++++++||+....+...+ +. ++..+|  +.+++++..+..||+++.++.+++
T Consensus        99 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~-~l~~~f~~~~~~~~~~~~~~kp~~~~~~~~~~  176 (247)
T 3dv9_A           99 EEFNKCPKAERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRL-NH-NFPGIFQANLMVTAFDVKYGKPNPEPYLMALK  176 (247)
T ss_dssp             HHHTTSCCCCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHH-HH-HSTTTCCGGGEECGGGCSSCTTSSHHHHHHHH
T ss_pred             HHHHhcccCCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHH-Hh-hHHHhcCCCeEEecccCCCCCCCCHHHHHHHH
Confidence            222   34788999999999999999999999999988888888 66 999999  899999999999999999999999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccccc
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|++|+++++|||+.+|+.+|+.+|+.+++++++......  ...++++++++.+|.+.+.
T Consensus       177 ~lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~~~~~~~l~~~~ad~v~~~~~el~~~l~  238 (247)
T 3dv9_A          177 KGGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTGPLHDNVLLNEGANLLFHSMPDFNKNWE  238 (247)
T ss_dssp             HHTCCGGGEEEEECSHHHHHHHHHTTSEEEEECCSSSCHHHHHTTTCSEEESSHHHHHHHHH
T ss_pred             HcCCChhheEEEeCCHHHHHHHHHCCCeEEEEcCCCCCHHHHHhcCCCEEECCHHHHHHHHH
Confidence            99999999999999999999999999999999986544332  3479999999999887765

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=100.00  E-value=6.3e-32  Score=215.94  Aligned_cols=212  Identities=28%  Similarity=0.396  Sum_probs=180.7

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhh-hhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE-KHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      +++|+|+||+||||+|+...+...+.+++++++....... ...+.+......++.+...++...... ....+.+.+.+
T Consensus        26 ~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  104 (259)
T 4eek_A           26 APFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLDLTEIAMYFTGQRFDGVLAYLAQQHDFVPPPD-FLDVLETRFNA  104 (259)
T ss_dssp             CCCSEEEEESBTTTEECHHHHHHHHHHHHHHTTCCCCHHHHHHHTTTCCHHHHHHHHHHHHCCCCCTT-HHHHHHHHHHH
T ss_pred             cCCCEEEECCCCCcccCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence            4689999999999999999999999999999998766544 466778888888888888888765533 33444444444


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce-EEeccccC-CCCCChHHHHHHHHHcCC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV-IVGSDEVR-TGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~-i~~~~~~~-~~kp~~~~~~~~l~~l~~  163 (260)
                      .+....++|++.++|+.|++.|++++++||.....++..+ +.+|+..+|+. +++++..+ ..||++..++.+++++|+
T Consensus       105 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi  183 (259)
T 4eek_A          105 AMTGVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKL-RVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGI  183 (259)
T ss_dssp             HHTTCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHH-HHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTC
T ss_pred             HhccCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH-HhcChHhhccceEEeHhhcCcCCCCChHHHHHHHHHcCC
Confidence            4467889999999999999999999999999999888888 88999999999 99999999 999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc----c-cc-ccccchhccccccccccccC
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ----T-HR-YTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~----~-~~-~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +|+++++|||+.+|+.+|+.+|+.+++++++...    . .. ...++++++++.||.+.+..
T Consensus       184 ~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~ad~vi~~l~el~~~l~~  246 (259)
T 4eek_A          184 LPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAELRAALAE  246 (259)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEECCTTSCCSSCHHHHHHHTCSEEECSHHHHHHHHHH
T ss_pred             CHHHEEEEcCCHHHHHHHHHCCCEEEEEccCCCcccccHHHHHhcCcchhhCCHHHHHHHHHh
Confidence            9999999999999999999999999999875332    1 22 35689999999999988764

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=100.00  E-value=3.5e-32  Score=215.24  Aligned_cols=209  Identities=20%  Similarity=0.278  Sum_probs=166.8

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCC--CChhhhhhccCCCHHHHHHHHHHHh------------------C
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE--WDGREKHKIVGKTPLEEAAIIVEDY------------------G   67 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~------------------~   67 (260)
                      ++|+|+||+||||+|+...+..++.++++++|..  .+...+....|......++.+....                  +
T Consensus         3 ~~k~viFDlDGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (240)
T 2hi0_A            3 KYKAAIFDMDGTILDTSADLTSALNYAFEQTGHRHDFTVEDIKNFFGSGVVVAVTRALAYEAGSSRESLVAFGTKDEQIP   82 (240)
T ss_dssp             SCSEEEECSBTTTEECHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCSSCHHHHHHHHHHHHTTCCHHHHTTTTSTTCCCC
T ss_pred             cccEEEEecCCCCccCHHHHHHHHHHHHHHcCCCCCCCHHHHHHhcCccHHHHHHHHHHhcccccccccccccccccccC
Confidence            4799999999999999999999999999999876  5566677778887666666554211                  1


Q ss_pred             CCCCHH---HHHHHHHHHHHhh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc
Q 024956           68 LPCAKH---EFVNEVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE  143 (260)
Q Consensus        68 ~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~  143 (260)
                      .....+   ++.+.+.+.+... .....++||+.++|+.|+++|++++++||+....+...+ +.+++. +|+.+++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~-~f~~~~~~~~  160 (240)
T 2hi0_A           83 EAVTQTEVNRVLEVFKPYYADHCQIKTGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLV-EELFPG-SFDFALGEKS  160 (240)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTSSSSCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHSTT-TCSEEEEECT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhhcCCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCc-ceeEEEecCC
Confidence            111222   2223333333332 235678999999999999999999999999988888888 788888 9999999999


Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-ccc-ccccchhccccccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THR-YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~-~~~~~~~v~~~~~l~~~~  218 (260)
                      ++..||+|+.+..+++++|++|++|++|||+.+|+.+|+.+|+.++++.++... ... ...++++++++.++...+
T Consensus       161 ~~~~Kp~p~~~~~~~~~l~~~~~~~~~vGDs~~Di~~a~~aG~~~v~v~~~~~~~~~~~~~~a~~~~~~~~el~~~l  237 (240)
T 2hi0_A          161 GIRRKPAPDMTSECVKVLGVPRDKCVYIGDSEIDIQTARNSEMDEIAVNWGFRSVPFLQKHGATVIVDTAEKLEEAI  237 (240)
T ss_dssp             TSCCTTSSHHHHHHHHHHTCCGGGEEEEESSHHHHHHHHHTTCEEEEESSSSSCHHHHHHTTCCCEECSHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEECCCCCchhHHHhcCCCEEECCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999886533 222 246889999999886654

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=100.00  E-value=1.3e-31  Score=211.72  Aligned_cols=207  Identities=15%  Similarity=0.198  Sum_probs=170.8

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHh-
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC-AKHEFVNEVYSMFSD-   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-   85 (260)
                      ++|+|+||+||||+++...+..++.+++++++.......+....+......+...   +++.. ........+.+.+.. 
T Consensus        28 mik~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  104 (240)
T 3sd7_A           28 NYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEY---YKFEDKKAKEAVEKYREYFADK  104 (240)
T ss_dssp             CCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCGGGGGGGSSSCHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHT
T ss_pred             hccEEEEecCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHHhCccHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999988777777778887765544332   23331 112222333333332 


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC-
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME-  164 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~-  164 (260)
                      ......++|++.++|+.|++.|++++++|++....++..+ +.+++..+|+.+++++..+..||++..++.+++++|++ 
T Consensus       105 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~  183 (240)
T 3sd7_A          105 GIFENKIYENMKEILEMLYKNGKILLVATSKPTVFAETIL-RYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKD  183 (240)
T ss_dssp             GGGCCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHHHTCCC
T ss_pred             cccccccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-HHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHHcCCCC
Confidence            2234789999999999999999999999999999898888 88999999999999999999999999999999999999 


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      |+++++|||+.+|+.+|+.+|+.++++.++......  +..++++++++.||.+.+
T Consensus       184 ~~~~i~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~v~~~~~el~~~l  239 (240)
T 3sd7_A          184 KDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDIL  239 (240)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEESSSSCCHHHHHHHCCSEEESSSTTHHHHH
T ss_pred             CCcEEEECCCHHHHHHHHHCCCCEEEEeCCCCCHHHHhhcCCCEEECCHHHHHHHh
Confidence            999999999999999999999999999986554443  477999999999987765

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=100.00  E-value=1.3e-31  Score=210.59  Aligned_cols=201  Identities=28%  Similarity=0.356  Sum_probs=158.2

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCC--CCCHHHH---HHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL--PCAKHEF---VNEVYSM   82 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~   82 (260)
                      ++|+|+||+||||+|+...+...+.++++++|.......+....|.......+.+...++.  ..+....   ...+...
T Consensus         1 ~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (233)
T 3nas_A            1 SLKAVIFDLDGVITDTAEYHFLAWKHIAEQIDIPFDRDMNERLKGISREESLESILIFGGAETKYTNAEKQELMHRKNRD   80 (233)
T ss_dssp             -CCEEEECSBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHTTTCCHHHHHHHHHHHTTCTTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCcCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence            3789999999999999999999999999999998888888888999988888889888876  4444332   2233333


Q ss_pred             HHhhhcc---CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           83 FSDHLCK---VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        83 ~~~~~~~---~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      +......   ..++|++.++|+.|++.|++++++||+..  +...+ +.+|+..+|+.+++++..+..||+++.++.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~  157 (233)
T 3nas_A           81 YQMLISKLTPEDLLPGIGRLLCQLKNENIKIGLASSSRN--APKIL-RRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAA  157 (233)
T ss_dssp             HHHHHHTCCGGGSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHH-HHTTCTTTCSEECCC---------CCHHHHHHH
T ss_pred             HHHHHhhcCcCCcCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHH-HHcCcHhhcCEEeeHhhCCCCCCChHHHHHHHH
Confidence            3333322   34799999999999999999999999855  66677 889999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      ++|++|+++++|||+.||+.||+.+|+.++++++.   ...+ .++++++++.++.
T Consensus       158 ~lgi~~~~~i~vGDs~~Di~~a~~aG~~~~~~~~~---~~~~-~ad~v~~s~~el~  209 (233)
T 3nas_A          158 MLDVSPADCAAIEDAEAGISAIKSAGMFAVGVGQG---QPML-GADLVVRQTSDLT  209 (233)
T ss_dssp             HHTSCGGGEEEEECSHHHHHHHHHTTCEEEECC-----------CSEECSSGGGCC
T ss_pred             HcCCCHHHEEEEeCCHHHHHHHHHcCCEEEEECCc---cccc-cCCEEeCChHhCC
Confidence            99999999999999999999999999999999772   2233 8999999999986

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=100.00  E-value=2.3e-31  Score=205.94  Aligned_cols=202  Identities=20%  Similarity=0.327  Sum_probs=165.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD--   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   85 (260)
                      ++|+|+||+||||+|+...+...+.++++++|.......+....|......++    .++..  ...+...+...+..  
T Consensus         3 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~   76 (209)
T 2hdo_A            3 TYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMT----ELGIA--ASEFDHFQAQYEDVMA   76 (209)
T ss_dssp             CCSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHHHH----HTTCC--GGGHHHHHHHHHHHHT
T ss_pred             cccEEEEcCCCCCcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCcHHHHHH----HcCCC--HHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999998877777777777876554443    34443  22332223332222  


Q ss_pred             -hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           86 -HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        86 -~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                       ......++|++.++|+.|+++ ++++++|++....++..+ +.+|+..+|+.++++++.+..||+++.++.+++++|++
T Consensus        77 ~~~~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~KP~~~~~~~~~~~~~~~  154 (209)
T 2hdo_A           77 SHYDQIELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGM-RSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVA  154 (209)
T ss_dssp             TCGGGCEECTTHHHHHHHSCTT-SEEEEECSSCHHHHHHHH-TTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCC
T ss_pred             hhcccCCcCCCHHHHHHHHHhc-CcEEEEeCCCHHHHHHHH-HHcChHhhccEEEecCcCCCCCCCcHHHHHHHHHcCCC
Confidence             224577899999999999999 999999999998888888 88899999999999999999999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      |+++++|||+.+|+.+|+.+|+.+++++++... ...+. ++++++++.|+.+.+
T Consensus       155 ~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~-a~~~~~~~~el~~~l  208 (209)
T 2hdo_A          155 PQNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQK-VAHRFQKPLDILELF  208 (209)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGGSC-CSEEESSGGGGGGGC
T ss_pred             cccEEEECCChhhHHHHHHcCCeEEEEcCCCCChhhhcc-CCEEeCCHHHHHHhh
Confidence            999999999999999999999999999975432 33344 999999999987654

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.98  E-value=3.7e-31  Score=208.50  Aligned_cols=209  Identities=21%  Similarity=0.208  Sum_probs=167.0

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC---Chhhhhhcc-------------CC-CHH----HHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW---DGREKHKIV-------------GK-TPL----EEAAIIVED   65 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------g~-~~~----~~~~~~~~~   65 (260)
                      |++|+|+||+||||+++...+..++.++++++|...   +...+....             +. ...    ..+..++..
T Consensus         3 m~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (240)
T 3qnm_A            3 LKYKNLFFDLDDTIWAFSRNARDTFEEVYQKYSFDRYFDSFDHYYTLYQRRNTELWLEYGEGKVTKEELNRQRFFYPLQA   82 (240)
T ss_dssp             CCCSEEEECCBTTTBCHHHHHHHHHHHHHHHTTGGGTSSSHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCcCchhhHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            368999999999999999888889999999988664   333321111             11 111    124555666


Q ss_pred             hCCCCCHHHHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956           66 YGLPCAKHEFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~  144 (260)
                      .+..  .......+...+.... ....++|++.++|+.|+ .|++++++||+....+...+ +.+++..+|+.+++++..
T Consensus        83 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~~~~~l-~~~~l~~~f~~~~~~~~~  158 (240)
T 3qnm_A           83 VGVE--DEALAERFSEDFFAIIPTKSGLMPHAKEVLEYLA-PQYNLYILSNGFRELQSRKM-RSAGVDRYFKKIILSEDL  158 (240)
T ss_dssp             TTCC--CHHHHHHHHHHHHHHGGGCCCBSTTHHHHHHHHT-TTSEEEEEECSCHHHHHHHH-HHHTCGGGCSEEEEGGGT
T ss_pred             cCCC--cHHHHHHHHHHHHHHhhhcCCcCccHHHHHHHHH-cCCeEEEEeCCchHHHHHHH-HHcChHhhceeEEEeccC
Confidence            6665  2344444444444333 45789999999999999 89999999999999888888 888999999999999999


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +..||++.+++.+++++|++|+++++|||++ +|+.+|+.+|+.+++++++.. ......|+++++++.|+..+..+
T Consensus       159 ~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~~~~~~~~~~~-~~~~~~~d~vi~sl~e~~~~~~~  234 (240)
T 3qnm_A          159 GVLKPRPEIFHFALSATQSELRESLMIGDSWEADITGAHGVGMHQAFYNVTER-TVFPFQPTYHIHSLKELMNLLEG  234 (240)
T ss_dssp             TCCTTSHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCC-CCCSSCCSEEESSTHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHcCCCcccEEEECCCchHhHHHHHHcCCeEEEEcCCCC-CCcCCCCceEECCHHHHHHHHhc
Confidence            9999999999999999999999999999997 999999999999999999654 34467899999999998877653

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.98  E-value=4e-30  Score=200.62  Aligned_cols=210  Identities=22%  Similarity=0.363  Sum_probs=173.9

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD   85 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (260)
                      ++|+|+||+||||+++...+...+.+++++++.... ...+....|.........+....++. .....+...+...+..
T Consensus         8 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (226)
T 1te2_A            8 QILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAIS   87 (226)
T ss_dssp             CCCEEEECCBTTTBCCHHHHHHHHHHHHHHTTCCGGGGGGSCCCTTCCHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhCCCHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHH
Confidence            589999999999999998888889999999887655 44555667777777777777666553 2344444444444433


Q ss_pred             hh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        86 ~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      .+ ....++|++.++++.+++.|++++++|+.....+...+ +.+++..+|+.+++++..+..||++..++.+++++|++
T Consensus        88 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~i~  166 (226)
T 1te2_A           88 LVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVD  166 (226)
T ss_dssp             HHHHHCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTSC
T ss_pred             HHhccCCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH-HhcCcHhhCcEEEeccccCCCCCChHHHHHHHHHcCCC
Confidence            32 35778999999999999999999999999988888888 88899999999999999999999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhccccccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      ++++++|||+.||++|++.+|+.+++++++.+. ...+..++++++++.|+.+..
T Consensus       167 ~~~~i~iGD~~nDi~~a~~aG~~~~~~~~~~~~~~~~~~~a~~v~~~~~el~~~~  221 (226)
T 1te2_A          167 PLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAKD  221 (226)
T ss_dssp             GGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCCHHH
T ss_pred             HHHeEEEeCCHHHHHHHHHcCCEEEEEcCCCCcccccccccCeEECCHHHHhHHH
Confidence            999999999999999999999999999886443 344778999999999987654

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.98  E-value=5.6e-31  Score=212.05  Aligned_cols=214  Identities=18%  Similarity=0.223  Sum_probs=170.3

Q ss_pred             ccccccEEEEecCCccccCHHHH-HHHHHHHHHHcCCCCChhhhhhccCCCHHHHHH----------HHHHHhCCCCCHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMF-SEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA----------IIVEDYGLPCAKH   73 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----------~~~~~~~~~~~~~   73 (260)
                      +|+++|+|+||+||||+++.... ...+..+++++|............+......+.          .+...++...+..
T Consensus        10 ~~~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (277)
T 3iru_A           10 CAGPVEALILDWAGTTIDFGSLAPVYAFMELFKQEGIEVTQAEAREPMGTEKSEHIRRMLGNSRIANAWLSIKGQASNEE   89 (277)
T ss_dssp             CCCCCCEEEEESBTTTBSTTCCHHHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHTTSHHHHHHHHHHHSSCCCHH
T ss_pred             hhccCcEEEEcCCCCcccCCcccHHHHHHHHHHHhCCCCCHHHHHHHhcCchHHHHHHhccchHHHHHHHHHhccCCCHH
Confidence            45578999999999999986544 678888899999888777777777776544333          3334555554444


Q ss_pred             HHHH---HHHHHHHhh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc-cceEEeccccCCCC
Q 024956           74 EFVN---EVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES-FSVIVGSDEVRTGK  148 (260)
Q Consensus        74 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~-f~~i~~~~~~~~~k  148 (260)
                      ....   .+...+... .....++|++.++|+.|++.|++++++||.....+...+ +.+++..+ |+.+++++..+..|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~k  168 (277)
T 3iru_A           90 DIKRLYDLFAPIQTRIVAQRSQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPAL-IAAKEQGYTPASTVFATDVVRGR  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHHHTTCCCSEEECGGGSSSCT
T ss_pred             HHHHHHHHHHHHHHHHhhccCccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHH-HhcCcccCCCceEecHHhcCCCC
Confidence            3322   222222222 234788999999999999999999999999998888888 77888887 89999999999999


Q ss_pred             CChHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCC------------------------cccc-cc
Q 024956          149 PSPDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK------------------------QTHR-YT  202 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~------------------------~~~~-~~  202 (260)
                      |++..++.+++++|++| +++++|||+.||+.+|+.+|+.++++.++..                        .... ..
T Consensus       169 p~~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  248 (277)
T 3iru_A          169 PFPDMALKVALELEVGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSCSGNEVGLDREDWQALSSDEQQSYRQHAEQRLFNA  248 (277)
T ss_dssp             TSSHHHHHHHHHHTCSCGGGEEEEESSHHHHHHHHHTTCEEEEECSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCccEEEEcCCHHHHHHHHHCCCeEEEEecCCcccccchhhhhhcchhhhhhhhhhhHHHHhhC
Confidence            99999999999999999 9999999999999999999999999999643                        1222 34


Q ss_pred             ccchhcccccccccccc
Q 024956          203 AADEVINSLLDLRPEKW  219 (260)
Q Consensus       203 ~~~~~v~~~~~l~~~~~  219 (260)
                      .|+++++++.||...+.
T Consensus       249 ~ad~v~~~~~el~~~l~  265 (277)
T 3iru_A          249 GAHYVIDSVADLETVIT  265 (277)
T ss_dssp             TCSEEESSGGGTHHHHH
T ss_pred             CCCEEecCHHHHHHHHH
Confidence            58999999999988765

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.97  E-value=4.8e-31  Score=207.20  Aligned_cols=208  Identities=15%  Similarity=0.130  Sum_probs=162.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhh---hhhc----------cCCCHH---HHHHHHHHHhCCCCC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE---KHKI----------VGKTPL---EEAAIIVEDYGLPCA   71 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------~g~~~~---~~~~~~~~~~~~~~~   71 (260)
                      ++|+|+||+||||+|+...+...+.+++++++.......   +...          .|....   ..++.+...++... 
T Consensus         3 m~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-   81 (235)
T 2om6_A            3 EVKLVTFDVWNTLLDLNIMLDEFSHQLAKISGLHIKDVANAVIEVRNEIKKMRAQASEDPRKVLTGSQEALAGKLKVDV-   81 (235)
T ss_dssp             CCCEEEECCBTTTBCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHHHHHTCCH-
T ss_pred             CceEEEEeCCCCCCCcchhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHHHhCCCH-
Confidence            479999999999999988888888889888886543322   1111          144433   45555666665542 


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCC---hHhHHHHHHhhcCCccccceEEeccccCCCC
Q 024956           72 KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWNESFSVIVGSDEVRTGK  148 (260)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~---~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~k  148 (260)
                       ... ......+...+....++|++.++|+.|++.|++++++|+..   ...+...+ +.+++..+|+.++++++.+..|
T Consensus        82 -~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~k  158 (235)
T 2om6_A           82 -ELV-KRATARAILNVDESLVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLL-ERFGLMEFIDKTFFADEVLSYK  158 (235)
T ss_dssp             -HHH-HHHHHHHHHHCCGGGBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHH-HHTTCGGGCSEEEEHHHHTCCT
T ss_pred             -HHH-HHHHHHHHHhccccCcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHH-HhCCcHHHhhhheeccccCCCC
Confidence             222 22222233333333469999999999999999999999998   88888788 8889999999999999999999


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      |+++.+..+++++|++|+++++|||+. ||+.||+.+|+.+++++++.........++++++++.|+...+.
T Consensus       159 p~~~~~~~~~~~lgi~~~~~~~iGD~~~nDi~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~  230 (235)
T 2om6_A          159 PRKEMFEKVLNSFEVKPEESLHIGDTYAEDYQGARKVGMWAVWINQEGDKVRKLEERGFEIPSIANLKDVIE  230 (235)
T ss_dssp             TCHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHTTSEEEEECTTCCSCEEEETTEEEESSGGGHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCccceEEECCChHHHHHHHHHCCCEEEEECCCCCCcccCCCCcchHhhHHHHHHHHH
Confidence            999999999999999999999999999 99999999999999999865444445568899999999877664

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.97  E-value=9.4e-30  Score=201.65  Aligned_cols=212  Identities=17%  Similarity=0.211  Sum_probs=168.9

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC-ChhhhhhccCCCHHHHHHHHHHHh----CCCCCHHHH---HH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDY----GLPCAKHEF---VN   77 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~~~~---~~   77 (260)
                      ..++|+|+||+||||+|+...+..++.++++++|... ....+..+.+......++..+...    +.......+   .+
T Consensus        20 ~~~~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (243)
T 2hsz_A           20 MTQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQAEKELTEDEFKYFKR   99 (243)
T ss_dssp             CSSCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHHHCSSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CccCCEEEEcCCCcCCCCHHHHHHHHHHHHHHcCCCCCCHHHHHHHhCchHHHHHHHHhhhhhccccccCCHHHHHHHHH
Confidence            4578999999999999999989899999999988764 345556667776655555544331    222232222   22


Q ss_pred             HHHHHHHhh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956           78 EVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        78 ~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                      .+.+.+... .....++|++.++|+.|+++|++++++||+....++..+ +.+|+..+|+.+++++..+..||+++.+..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~  178 (243)
T 2hsz_A          100 QFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPIL-TAFGIDHLFSEMLGGQSLPEIKPHPAPFYY  178 (243)
T ss_dssp             HHHHHHHHHTTSSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTTTSSSCTTSSHHHHH
T ss_pred             HHHHHHHHhccccCccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHH-HHcCchheEEEEEecccCCCCCcCHHHHHH
Confidence            233333322 234678999999999999999999999999999888888 888999999999999999999999999999


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc--cccccccchhccccccccccc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ--THRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~--~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      +++++|++|+++++|||+.+|+.+|+.+|+.++++.++...  ......++++++++.+|.+.+
T Consensus       179 ~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~ad~vi~~~~el~~~l  242 (243)
T 2hsz_A          179 LCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILKIT  242 (243)
T ss_dssp             HHHHHTCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGGGGGT
T ss_pred             HHHHhCcChhhEEEEcCCHHHHHHHHHCCCeEEEEcCCCCchhhhhhCCCCEEECCHHHHHHHh
Confidence            99999999999999999999999999999999999886432  223567899999999987654

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.97  E-value=7.3e-30  Score=198.70  Aligned_cols=200  Identities=23%  Similarity=0.309  Sum_probs=164.5

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMFS   84 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~   84 (260)
                      +|+|+||+||||+|+...+...+.+++++++.. ..........|......+..+....+...+....   ...+...+.
T Consensus         2 ~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (221)
T 2wf7_A            2 FKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNYV   81 (221)
T ss_dssp             CCEEEECCBTTTBTHHHHHHHHHHHHHHHTTCCCCSHHHHTTTTTCCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCcccCChHHHHHHHHHHHHHcCCCCCCHHHHHHhCCCCHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence            789999999999999988888999999999877 6666777788888777777787777655444332   222233333


Q ss_pred             hhhc---cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc
Q 024956           85 DHLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL  161 (260)
Q Consensus        85 ~~~~---~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l  161 (260)
                      ....   ...++|++.++++.+++.|++++++|+.  ......+ +.+++..+|+.+++++..+..||+|+.++.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~l  158 (221)
T 2wf7_A           82 KMIQDVSPADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLL-ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAV  158 (221)
T ss_dssp             HHGGGCCGGGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHH-HHTTCGGGCSEECCTTTSSSCTTSSHHHHHHHHHT
T ss_pred             HHHhhccCCCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHH-HHcChHHHcceEeccccCCCCCCChHHHHHHHHHc
Confidence            3222   3568899999999999999999999998  4456666 77899999999999999999999999999999999


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      |++|+++++|||+.||++||+.+|+.+++++.   ....+ .++++++++.++.
T Consensus       159 gi~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~---~~~~~-~a~~v~~~~~el~  208 (221)
T 2wf7_A          159 GVAPSESIGLEDSQAGIQAIKDSGALPIGVGR---PEDLG-DDIVIVPDTSHYT  208 (221)
T ss_dssp             TCCGGGEEEEESSHHHHHHHHHHTCEEEEESC---HHHHC-SSSEEESSGGGCC
T ss_pred             CCChhHeEEEeCCHHHHHHHHHCCCEEEEECC---HHHhc-cccchhcCHHhCC
Confidence            99999999999999999999999999999976   33344 7899999999874

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.97  E-value=1.8e-30  Score=203.34  Aligned_cols=211  Identities=23%  Similarity=0.378  Sum_probs=171.2

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (260)
                      +++|+|+||+||||+++...+...+.++++++|.... ........+....+.++.+...++...... ....+.+.+..
T Consensus         2 ~~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   80 (229)
T 2fdr_A            2 SGFDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPLSAS-LLDKSEKLLDM   80 (229)
T ss_dssp             -CCSEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCHHHHHHHHHHHHCCCCCTH-HHHHHHHHHHH
T ss_pred             CCccEEEEcCCCCcCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHH
Confidence            3579999999999999998888889999999998776 455567778888888888888877654322 23334444433


Q ss_pred             hh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCC--CCChHHHHHHHHHc
Q 024956           86 HL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTG--KPSPDIFLEAAKRL  161 (260)
Q Consensus        86 ~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~--kp~~~~~~~~l~~l  161 (260)
                      .+ ....++|++.++++.++.   +++++|++....+...+ +.+++..+| +.+++++..+..  ||++..++.+++++
T Consensus        81 ~~~~~~~~~~~~~~~l~~l~~---~~~i~s~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l  156 (229)
T 2fdr_A           81 RLERDVKIIDGVKFALSRLTT---PRCICSNSSSHRLDMML-TKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQF  156 (229)
T ss_dssp             HHHHHCCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHH-HHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHH
T ss_pred             HhhcCCccCcCHHHHHHHhCC---CEEEEECCChhHHHHHH-HhCChHHhccceEEeccccccCCCCcCHHHHHHHHHHc
Confidence            22 457789999999998874   89999999998888888 788999999 999999888889  99999999999999


Q ss_pred             CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-----cccccc-cchhccccccccccccCCC
Q 024956          162 NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-----THRYTA-ADEVINSLLDLRPEKWGLP  222 (260)
Q Consensus       162 ~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-----~~~~~~-~~~~v~~~~~l~~~~~~l~  222 (260)
                      |++|+++++|||+.||+.||+.+|+.+++++++...     ...+.. ++++++++.++.+.+..++
T Consensus       157 ~~~~~~~i~iGD~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el~~~l~~~~  223 (229)
T 2fdr_A          157 GVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAAMA  223 (229)
T ss_dssp             TCCGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHHHHT
T ss_pred             CCChhHeEEEcCCHHHHHHHHHCCCEEEEEecCCccchhhhHHHhhcCCceeecCHHHHHHHHHHhh
Confidence            999999999999999999999999999999885442     123333 8999999999988775443

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.97  E-value=6.5e-30  Score=196.57  Aligned_cols=201  Identities=17%  Similarity=0.239  Sum_probs=165.7

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+|+||+||||+++...+...+.++++++|........+...+ .+....++.+.......   ......+...+...
T Consensus         3 ~~k~i~fDlDGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   79 (207)
T 2go7_A            3 QKTAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLD---VEVLNQVRAQSLAE   79 (207)
T ss_dssp             -CCEEEECTBTTTEECHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSCHHHHHHHHHHHHTCC---HHHHHHHHHHHHTT
T ss_pred             cccEEEEeCCCcccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHccccHHHHHHHhhchhhcc---HHHHHHHHHHHHHh
Confidence            579999999999999998888889999999888777777777777 66666665554333321   33334444444433


Q ss_pred             h-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        87 ~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      . ....+.|++.++++.+++.|++++++|++...... .+ +.+++..+|+.+++++..+..||+++.+..+++++|++|
T Consensus        80 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~-~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~  157 (207)
T 2go7_A           80 KNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-IL-KDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNS  157 (207)
T ss_dssp             CGGGCEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HH-HHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCG
T ss_pred             ccccceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HH-HHcCchhheeeEEecCcCCCCCCCcHHHHHHHHHhCCCc
Confidence            3 45778999999999999999999999999988888 77 788999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +++++|||+.||+.|++.+|+.++++.++. .     .++++++++.|+.+.+.
T Consensus       158 ~~~~~iGD~~nDi~~~~~aG~~~i~~~~~~-~-----~a~~v~~~~~el~~~l~  205 (207)
T 2go7_A          158 DNTYYIGDRTLDVEFAQNSGIQSINFLEST-Y-----EGNHRIQALADISRIFE  205 (207)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEESSCCS-C-----TTEEECSSTTHHHHHTS
T ss_pred             ccEEEECCCHHHHHHHHHCCCeEEEEecCC-C-----CCCEEeCCHHHHHHHHh
Confidence            999999999999999999999999998754 2     68899999999877653

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.97  E-value=1.1e-30  Score=205.16  Aligned_cols=210  Identities=19%  Similarity=0.243  Sum_probs=165.1

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHH-cCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCC-----HHHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVK-YGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA-----KHEFVNEVYS   81 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   81 (260)
                      ++|+|+||+||||+|+...+...+.+++++ ++.... ..+....|......++.++..++....     ...+...+..
T Consensus         3 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (234)
T 2hcf_A            3 SRTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGS-TGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYIA   81 (234)
T ss_dssp             CCEEEEECCBTTTEEECTHHHHHHHHHHHHHHSCCCC-C---CCTTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEcCCCCcccCccchHHHHHHHHHHHhCCCCc-cchhhhcCCChHHHHHHHHHHcCCCcccchhHHHHHHHHHHH
Confidence            479999999999999988888888888887 676655 455677788877777778877776532     1222233333


Q ss_pred             HHHhhh--ccCCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccC-CCCCChHHHHHH
Q 024956           82 MFSDHL--CKVKALPGANRLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVR-TGKPSPDIFLEA  157 (260)
Q Consensus        82 ~~~~~~--~~~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~-~~kp~~~~~~~~  157 (260)
                      .+....  ....++|++.++|+.|+++ |++++++|++....+...+ +.+++..+|+.++++++.. ..||.+..++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~~k~~~~~~~~~  160 (234)
T 2hcf_A           82 LFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKL-KLPGIDHYFPFGAFADDALDRNELPHIALERA  160 (234)
T ss_dssp             HHHHHCCGGGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHH-HTTTCSTTCSCEECTTTCSSGGGHHHHHHHHH
T ss_pred             HHHHHhccCCCCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHH-HHCCchhhcCcceecCCCcCccchHHHHHHHH
Confidence            333222  3467889999999999999 9999999999998888888 8899999999877766654 456888999999


Q ss_pred             HHHcC--CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccc--cccchhcccccccccccc
Q 024956          158 AKRLN--MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY--TAADEVINSLLDLRPEKW  219 (260)
Q Consensus       158 l~~l~--~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~--~~~~~~v~~~~~l~~~~~  219 (260)
                      ++++|  ++|+++++|||+.||+.+|+.+|+.++++.++.......  ..++++++++.++...+.
T Consensus       161 ~~~lg~~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~~~~~~~~~~~a~~v~~~~~el~~~l~  226 (234)
T 2hcf_A          161 RRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLA  226 (234)
T ss_dssp             HHHHCCCCCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCHHHHHH
T ss_pred             HHHhCCCCCcccEEEECCCHHHHHHHHHCCCcEEEEcCCCCCHHHHHhCCCCEEeCCHHhHHHHHH
Confidence            99999  999999999999999999999999999998865443332  348999999999987764

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.97  E-value=1.6e-29  Score=197.16  Aligned_cols=213  Identities=22%  Similarity=0.249  Sum_probs=162.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+|+||+||||+++...+...+.+++++++.. .....+....|.......+.+.... .......+...+...+...
T Consensus         5 ~~k~v~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (225)
T 3d6j_A            5 KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGIT-DADQLESFRQEYSKEADIY   83 (225)
T ss_dssp             CCSEEEECCBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHTTTTSCHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCCcHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh
Confidence            4799999999999999988888899999998875 3445566677776655554443211 0001122222333333333


Q ss_pred             h-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           87 L-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        87 ~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      + ....+.|++.++++.+++.|++++++|+.....+...+ +.+++..+|+.+++++..+..||++..+..+++++|+++
T Consensus        84 ~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  162 (225)
T 3d6j_A           84 MNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFL-RNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACP  162 (225)
T ss_dssp             TGGGCEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHH-HTSSCTTCCSEEECGGGCSSCTTSTHHHHHHHHHTTCCG
T ss_pred             ccccCccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHcCchhheeeeeehhhcCCCCCChHHHHHHHHHhCCCh
Confidence            2 34677899999999999999999999999988888888 888999999999999988999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-cccc-ccchhccccccccccccCCC
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-HRYT-AADEVINSLLDLRPEKWGLP  222 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-~~~~-~~~~~v~~~~~l~~~~~~l~  222 (260)
                      +++++|||+.||+.|++.+|+.++++.++.... .... .++++++++.|+.+.+..+.
T Consensus       163 ~~~i~iGD~~nDi~~~~~aG~~~~~~~~~~~~~~~l~~~~ad~v~~~~~el~~~l~~~~  221 (225)
T 3d6j_A          163 EEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKS  221 (225)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEEETTSSCCTTGGGGSCCSEEESSGGGGC-------
T ss_pred             HHeEEEcCCHHHHHHHHHCCCeEEEECCCCCChHHHhhcCCCEEECCHHHHHHhhhhhc
Confidence            999999999999999999999999998854433 3333 38999999999988876443

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.97  E-value=2.6e-30  Score=202.98  Aligned_cols=201  Identities=22%  Similarity=0.221  Sum_probs=160.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHH-HHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVL-KTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      |+++|+|+||+||||+|+...+...+ .+++++++...  ..+....+......+..+...     ........+...+.
T Consensus        22 m~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~~g~~~--~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~   94 (231)
T 3kzx_A           22 MKQPTAVIFDWYNTLIDTSINIDRTTFYQVLDQMGYKN--IDLDSIPNSTIPKYLITLLGK-----RWKEATILYENSLE   94 (231)
T ss_dssp             CCCCSEEEECTBTTTEETTSSCCHHHHHHHHHHTTCCC--CCCTTSCTTTHHHHHHHHHGG-----GHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCCCcCCchhHHHHHHHHHHHHcCCCH--HHHHHHhCccHHHHHHHHhCc-----hHHHHHHHHHHHHh
Confidence            45789999999999999987777777 88888888654  444555666655544444321     12333344444443


Q ss_pred             --hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           85 --DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        85 --~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                        .......++|++.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+++.++.+++++|
T Consensus        95 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~lg  173 (231)
T 3kzx_A           95 KSQKSDNFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEI-HHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTNIN  173 (231)
T ss_dssp             HCCSCCCCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHHHT
T ss_pred             hhcccccceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHH-HHCCchhheeeEEcccccCCCCCChHHHHHHHHHcC
Confidence              22345788999999999999999999999999999998888 889999999999999999999999999999999999


Q ss_pred             CCCC-cEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          163 MEPS-SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~-~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++|+ ++++|||+.+|+.+|+.+|+.++++..+..     ..++++++++.+|.+.+.
T Consensus       174 i~~~~~~v~vGD~~~Di~~a~~aG~~~v~~~~~~~-----~~~~~~~~~~~el~~~l~  226 (231)
T 3kzx_A          174 IEPSKEVFFIGDSISDIQSAIEAGCLPIKYGSTNI-----IKDILSFKNFYDIRNFIC  226 (231)
T ss_dssp             CCCSTTEEEEESSHHHHHHHHHTTCEEEEECC----------CCEEESSHHHHHHHHH
T ss_pred             CCcccCEEEEcCCHHHHHHHHHCCCeEEEECCCCC-----CCCceeeCCHHHHHHHHH
Confidence            9999 999999999999999999999999966322     457788999999877654

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.1e-29  Score=200.88  Aligned_cols=210  Identities=18%  Similarity=0.200  Sum_probs=158.8

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcC---CCCChhhhhhcc--C-----CCHHHHHHHHHHHh-CCCCCHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYG---KEWDGREKHKIV--G-----KTPLEEAAIIVEDY-GLPCAKHEFVN   77 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--g-----~~~~~~~~~~~~~~-~~~~~~~~~~~   77 (260)
                      +|+|+||+||||+|+...+..++.+++++++   ............  +     ......+..++..+ +...  .....
T Consensus         2 ~k~iiFDlDGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   79 (241)
T 2hoq_A            2 VKVIFFDLDDTLVDTSKLAEIARKNAIENMIRHGLPVDFETAYSELIELIKEYGSNFPYHFDYLLRRLDLPYN--PKWIS   79 (241)
T ss_dssp             CCEEEECSBTTTBCHHHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHCTTCTTHHHHHHHHTTCCCC--HHHHH
T ss_pred             ccEEEEcCCCCCCCChhhHHHHHHHHHHHHHHccccccHHHHHHHHHHhhcccchhHHHHHHHHHHHhcCCcc--chHHH
Confidence            6899999999999999888888888887763   333332221111  0     00011234444554 4432  11223


Q ss_pred             HHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956           78 EVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        78 ~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                      .+.+.+...+ ....++|++.++|+.|+++|++++++||+....+...+ +.+|+..+|+.+++++..+..||+++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~  158 (241)
T 2hoq_A           80 AGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDGNPVKQWEKI-LRLELDDFFEHVIISDFEGVKKPHPKIFKK  158 (241)
T ss_dssp             HHHHHHHHHHHHHCCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHH-HHTTCGGGCSEEEEGGGGTCCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHH-HHcCcHhhccEEEEeCCCCCCCCCHHHHHH
Confidence            3333333322 34678999999999999999999999999998888888 889999999999999999999999999999


Q ss_pred             HHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccc---cccchhccccccccccccCC
Q 024956          157 AAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRY---TAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~---~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +++++|++|+++++|||+. ||+.+|+.+|+.++++.++.......   ..++++++++.++...+..+
T Consensus       159 ~~~~~g~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~~~~i~~~~el~~~l~~~  227 (241)
T 2hoq_A          159 ALKAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARE  227 (241)
T ss_dssp             HHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECCSCCCHHHHTTGGGCSEEESSTTHHHHHHHHC
T ss_pred             HHHHcCCCcccEEEECCCchHhHHHHHHCCCEEEEECCCCCCcccccccCCCCEEECCHHHHHHHHHHH
Confidence            9999999999999999999 99999999999999997754433222   26899999999998877543

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.97  E-value=3.9e-30  Score=201.59  Aligned_cols=209  Identities=18%  Similarity=0.216  Sum_probs=156.3

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh---------hhhhhccCCC------HHHHHHHHHHHhCCCC
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG---------REKHKIVGKT------PLEEAAIIVEDYGLPC   70 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~~------~~~~~~~~~~~~~~~~   70 (260)
                      |+++|+|+||+||||+++...+..+... +...+..+..         .......+..      ....+..+++.++...
T Consensus         2 M~~~k~i~fDlDGTL~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (230)
T 3um9_A            2 MHAIKAVVFDLYGTLYDVYSVRTSCERI-FPGQGEMVSKMWRQKQLEYTWMRTLMGQYQDFESATLDALRYTCGSLGLAL   80 (230)
T ss_dssp             CSSCCEEEECSBTTTBCGGGGHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCceEEEEcCCCCcCcchHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHHHHHHHHcCCCC
Confidence            4578999999999999986555433322 1111000000         0000111110      1334556666777654


Q ss_pred             CHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCC
Q 024956           71 AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPS  150 (260)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~  150 (260)
                      .... .+    .+...+....++|++.++++.|++.|++++++||+....+...+ +.+++..+|+.+++++..+..||+
T Consensus        81 ~~~~-~~----~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~kp~  154 (230)
T 3um9_A           81 DADG-EA----HLCSEYLSLTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVV-GNSGLTNSFDHLISVDEVRLFKPH  154 (230)
T ss_dssp             CHHH-HH----HHHHHTTSCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHHTCGGGCSEEEEGGGTTCCTTC
T ss_pred             CHHH-HH----HHHHHHhcCCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHH-HHCCChhhcceeEehhhcccCCCC
Confidence            4322 12    22233456789999999999999999999999999999888888 888999999999999999999999


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-ccccccchhccccccccccccCC
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +..++.+++++|++|+++++|||+.+|+.+|+.+|+.+++++++.... ..+..++++++++.++.+.+..+
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~~  226 (230)
T 3um9_A          155 QKVYELAMDTLHLGESEILFVSCNSWDATGAKYFGYPVCWINRSNGVFDQLGVVPDIVVSDVGVLASRFSPV  226 (230)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHTCCEEEECTTSCCCCCSSCCCSEEESSHHHHHHTCCC-
T ss_pred             hHHHHHHHHHhCCCcccEEEEeCCHHHHHHHHHCCCEEEEEeCCCCccccccCCCcEEeCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999854433 33578999999999998887654

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=202.70  Aligned_cols=210  Identities=22%  Similarity=0.240  Sum_probs=166.6

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh------------------ccCCCHHHH----HHHHHHHh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK------------------IVGKTPLEE----AAIIVEDY   66 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~~~~~~----~~~~~~~~   66 (260)
                      +|+|+||+||||+++...+...+.++++++|..+....+..                  ..|......    +...+..+
T Consensus         1 ik~iiFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   80 (263)
T 3k1z_A            1 MRLLTWDVKDTLLRLRHPLGEAYATKARAHGLEVEPSALEQGFRQAYRAQSHSFPNYGLSHGLTSRQWWLDVVLQTFHLA   80 (263)
T ss_dssp             CCEEEECCBTTTEEESSCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHSTGGGGGGTCCHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEcCCCceeCCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhhhhccccccccCCCHHHHHHHHHHHHHHHc
Confidence            58999999999999877777788889999998776654422                  134444433    34444555


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhc--cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956           67 GLPCAKHEFVNEVYSMFSDHLC--KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~  144 (260)
                      +. .....+.......+.....  ...++|++.++|+.|++.|++++++||.... +...+ +.+|+..+|+.+++++..
T Consensus        81 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l-~~~gl~~~f~~~~~~~~~  157 (263)
T 3k1z_A           81 GV-QDAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECRTRGLRLAVISNFDRR-LEGIL-GGLGLREHFDFVLTSEAA  157 (263)
T ss_dssp             TC-CCHHHHHHHHHHHHHHTTSGGGEEECTTHHHHHHHHHHTTCEEEEEESCCTT-HHHHH-HHTTCGGGCSCEEEHHHH
T ss_pred             CC-CCHHHHHHHHHHHHHHhcCcccceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HHHHH-HhCCcHHhhhEEEeeccc
Confidence            54 2344444445555554443  3578999999999999999999999998775 57777 889999999999999999


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccc---cccccchhccccccccccccC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTH---RYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~---~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +..||++..+..+++++|++|+++++|||++ +|+.+|+.+|+.+++++++.....   ....++++++++.+|.+.+..
T Consensus       158 ~~~Kp~~~~~~~~~~~~g~~~~~~~~vGD~~~~Di~~a~~aG~~~i~~~~~~~~~~~~~~~~~ad~v~~~l~el~~~l~~  237 (263)
T 3k1z_A          158 GWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGPQALDPVVRDSVPKEHILPSLAHLLPALDC  237 (263)
T ss_dssp             SSCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHTHHHHTTTCEEEEECCSSCCCHHHHHHSCGGGEESSGGGHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHCCCEEEEEcCCCCCchhhcccCCCceEeCCHHHHHHHHHH
Confidence            9999999999999999999999999999998 999999999999999998643332   234789999999999988764


Q ss_pred             C
Q 024956          221 L  221 (260)
Q Consensus       221 l  221 (260)
                      +
T Consensus       238 ~  238 (263)
T 3k1z_A          238 L  238 (263)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.97  E-value=1.2e-29  Score=199.81  Aligned_cols=205  Identities=17%  Similarity=0.208  Sum_probs=162.5

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC------------CCH----HHHHHHHHHHhCCC
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG------------KTP----LEEAAIIVEDYGLP   69 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------~~~----~~~~~~~~~~~~~~   69 (260)
                      ++++|+|+||+||||+|+...+..++.++++++|.......+....+            ...    ...+..+.+.++..
T Consensus         3 ~~~~k~i~fD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (240)
T 3smv_A            3 LTDFKALTFDCYGTLIDWETGIVNALQPLAKRTGKTFTSDELLEVFGRNESPQQTETPGALYQDILRAVYDRIAKEWGLE   82 (240)
T ss_dssp             GGGCSEEEECCBTTTBCHHHHHHHHTHHHHHHHTCCCCHHHHHHHHHHHHGGGCCSSCCSCHHHHHHHHHHHHHHHTTCC
T ss_pred             CccceEEEEeCCCcCcCCchhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHHHHhCCC
Confidence            34689999999999999998898999999999998876655432211            111    23445566666665


Q ss_pred             CCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCC
Q 024956           70 CAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP  149 (260)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp  149 (260)
                      ....     ....+...+....++|++.++|+.|++ |++++++||+....+...+ +.  +..+|+.++++++++..||
T Consensus        83 ~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~~~~~l-~~--l~~~fd~i~~~~~~~~~KP  153 (240)
T 3smv_A           83 PDAA-----EREEFGTSVKNWPAFPDTVEALQYLKK-HYKLVILSNIDRNEFKLSN-AK--LGVEFDHIITAQDVGSYKP  153 (240)
T ss_dssp             CCHH-----HHHHHHTGGGGCCBCTTHHHHHHHHHH-HSEEEEEESSCHHHHHHHH-TT--TCSCCSEEEEHHHHTSCTT
T ss_pred             CCHH-----HHHHHHHHHhcCCCCCcHHHHHHHHHh-CCeEEEEeCCChhHHHHHH-Hh--cCCccCEEEEccccCCCCC
Confidence            4322     223344445567899999999999999 7999999999998888777 54  5678999999999999999


Q ss_pred             ChHHHHHH---HHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCC-------Cc-cccccccchhcccccccccc
Q 024956          150 SPDIFLEA---AKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP-------KQ-THRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       150 ~~~~~~~~---l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~-------~~-~~~~~~~~~~v~~~~~l~~~  217 (260)
                      ++..|..+   ++++|++|+++++|||+. +|+.+|+.+|+.+++++++.       .. ......++++++++.+|.+.
T Consensus       154 ~~~~~~~~l~~~~~lgi~~~~~~~vGD~~~~Di~~a~~aG~~~~~~~~~~~~~g~g~~~~~~~~~~ad~v~~~~~el~~~  233 (240)
T 3smv_A          154 NPNNFTYMIDALAKAGIEKKDILHTAESLYHDHIPANDAGLVSAWIYRRHGKEGYGATHVPSRMPNVDFRFNSMGEMAEA  233 (240)
T ss_dssp             SHHHHHHHHHHHHHTTCCGGGEEEEESCTTTTHHHHHHHTCEEEEECTTCC-------CCCSSCCCCSEEESSHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCchhEEEECCCchhhhHHHHHcCCeEEEEcCCCcccCCCCCCCCcCCCCCCEEeCCHHHHHHH
Confidence            99999998   899999999999999997 99999999999999998741       11 22357899999999998877


Q ss_pred             cc
Q 024956          218 KW  219 (260)
Q Consensus       218 ~~  219 (260)
                      +.
T Consensus       234 l~  235 (240)
T 3smv_A          234 HK  235 (240)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.97  E-value=7.6e-30  Score=200.39  Aligned_cols=208  Identities=15%  Similarity=0.212  Sum_probs=155.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh---------hhhhcc----CC--C----HHHHHHHHHHHh
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR---------EKHKIV----GK--T----PLEEAAIIVEDY   66 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~----g~--~----~~~~~~~~~~~~   66 (260)
                      |+++|+|+||+||||+++...+..+. +.+...+......         ......    +.  .    ....+..+.+.+
T Consensus         1 M~~~k~i~FDlDGTL~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (233)
T 3umb_A            1 MTSIRAVVFDAYGTLFDVYSVAARAE-QLFPGKGEALSVLWRDRQIDYTRIRSLAGPSGEHYKPFWDVTVDALRYACARL   79 (233)
T ss_dssp             -CCCCEEEECSBTTTEETHHHHHHHH-HHSTTCHHHHHHHHHHHHHHHHHHHHHHCTTSTTCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCceEEEEeCCCcccccHHHHHHHH-HHhccchhhhhHHHHhhhhHHHHHHHhcccccCCCCCHHHHHHHHHHHHHHHc
Confidence            34689999999999999876554332 2221111100000         000000    10  1    123445566677


Q ss_pred             CCCCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCC
Q 024956           67 GLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT  146 (260)
Q Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~  146 (260)
                      +.....+.. ..+.    ..+....++|++.++|+.|++.|++++++||+....+...+ +.+++..+|+.+++++..+.
T Consensus        80 g~~~~~~~~-~~~~----~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~  153 (233)
T 3umb_A           80 NLPLGNHAE-ATLM----REYACLSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAV-KSAGMSGLFDHVLSVDAVRL  153 (233)
T ss_dssp             TCCCCHHHH-HHHH----HHHHSCEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHH-HTTTCTTTCSEEEEGGGTTC
T ss_pred             CCCCCHHHH-HHHH----HHHhcCCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHH-HHCCcHhhcCEEEEecccCC
Confidence            766443322 2222    22346788999999999999999999999999999888888 88999999999999999999


Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhccccccccccccC
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      .||++..++.+++++|++|+++++|||+.+|+.+|+.+|+.+++++++... ...+..++++++++.||.+.+..
T Consensus       154 ~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~~G~~~~~v~~~~~~~~~~~~~~~~v~~~~~el~~~l~~  228 (233)
T 3umb_A          154 YKTAPAAYALAPRAFGVPAAQILFVSSNGWDACGATWHGFTTFWINRLGHPPEALDVAPAAAGHDMRDLLQFVQA  228 (233)
T ss_dssp             CTTSHHHHTHHHHHHTSCGGGEEEEESCHHHHHHHHHHTCEEEEECTTCCCCCSSSCCCSEEESSHHHHHHHHHC
T ss_pred             CCcCHHHHHHHHHHhCCCcccEEEEeCCHHHHHHHHHcCCEEEEEcCCCCCchhccCCCCEEECCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999985433 33467799999999999887754

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.96  E-value=5.7e-29  Score=199.10  Aligned_cols=211  Identities=19%  Similarity=0.273  Sum_probs=153.0

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHH----cCCCCChhh-----hhhccC-------CCHHHH----HHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVK----YGKEWDGRE-----KHKIVG-------KTPLEE----AAIIVED   65 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~g-------~~~~~~----~~~~~~~   65 (260)
                      .+++|+|+||+||||+|+...+..++.++++.    ++.......     .....+       ......    +...+..
T Consensus        15 ~~~~k~viFDlDGTLvds~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (260)
T 2gfh_A           15 LSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYSTCITDVRTSHWEEAIQE   94 (260)
T ss_dssp             CCCCCEEEECCBTTTBCHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHH
Confidence            35789999999999999998888888877763    443321111     111111       111111    1112221


Q ss_pred             -hCCCCCHHHHHHHHHHHHH-hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc
Q 024956           66 -YGLPCAKHEFVNEVYSMFS-DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE  143 (260)
Q Consensus        66 -~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~  143 (260)
                       .+.... .+....+...+. .......++||+.++|++|++ +++++++||+....+...+ +.+|+..+|+.++++++
T Consensus        95 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l-~~~gl~~~f~~i~~~~~  171 (260)
T 2gfh_A           95 TKGGADN-RKLAEECYFLWKSTRLQHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKI-EACACQSYFDAIVIGGE  171 (260)
T ss_dssp             HHCSSCC-HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHH-HHHTCGGGCSEEEEGGG
T ss_pred             hcCccch-HHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHc-CCcEEEEECcChHHHHHHH-HhcCHHhhhheEEecCC
Confidence             121111 222222222222 223457899999999999998 4999999999999888888 88999999999999999


Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCC-eEEEEcCCCCc-cccccccchhcccccccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGM-EVVAVPSLPKQ-THRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~-~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      .+..||+|+.|..+++++|++|++++||||+ .+|+.+|+.+|+ .++++.++... ......++++++++.+|...+.
T Consensus       172 ~~~~KP~p~~~~~~~~~~~~~~~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~~~~~~~~~~~~~~~~i~~~~el~~~l~  250 (260)
T 2gfh_A          172 QKEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQ  250 (260)
T ss_dssp             SSSCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHcCCChhhEEEECCCchhhHHHHHHCCCceEEEEcCCCCCcCcccCCCCEEECCHHHHHHHHH
Confidence            9999999999999999999999999999996 899999999999 89999774332 2234578999999999877664

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.96  E-value=6.6e-29  Score=199.18  Aligned_cols=212  Identities=17%  Similarity=0.219  Sum_probs=164.3

Q ss_pred             ccccEEEEecCCccccCHH-HHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHH----------HHhCCCCCHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDG-MFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIV----------EDYGLPCAKHEF   75 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~~   75 (260)
                      +++|+|+||+||||+|+.. .+...+.++++++|.......+....|.........+.          ..++........
T Consensus         4 m~ik~i~fDlDGTLld~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (267)
T 1swv_A            4 MKIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEADI   83 (267)
T ss_dssp             -CCCEEEECSBTTTBSTTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHHSHHHHHHHHHHHSSCCCHHHH
T ss_pred             CCceEEEEecCCCEEeCCCccHHHHHHHHHHHcCCCCCHHHHHHHhccchHHHHHHhcccHHHHHHHHHHhCCCCCHHHH
Confidence            3589999999999999877 56788888899988877766666777776554443332          234443333322


Q ss_pred             H---HHHHHHHHh-hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCC
Q 024956           76 V---NEVYSMFSD-HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPS  150 (260)
Q Consensus        76 ~---~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~  150 (260)
                      .   ..+...+.. ......++|++.++++.|++.|++++++|+.....+...+ +.+++..+| +.+++++..+..||+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~kp~  162 (267)
T 1swv_A           84 QEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVA-KEAALQGYKPDFLVTPDDVPAGRPY  162 (267)
T ss_dssp             HHHHHHHHHHHHHHGGGGCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHH-HHHHHTTCCCSCCBCGGGSSCCTTS
T ss_pred             HHHHHHHHHHHHHhhccccccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHH-HHcCCcccChHheecCCccCCCCCC
Confidence            2   222222222 2235678899999999999999999999999988888777 777777775 888888889999999


Q ss_pred             hHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------ccc-cccc
Q 024956          151 PDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THR-YTAA  204 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~-~~~~  204 (260)
                      +..+..+++++|+++ +++++|||+.||+.||+.+|+.++++.+++..                        ... ...|
T Consensus       163 ~~~~~~~~~~lgi~~~~~~i~iGD~~nDi~~a~~aG~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  242 (267)
T 1swv_A          163 PWMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGA  242 (267)
T ss_dssp             SHHHHHHHHHHTCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCCCcCEEEEeCCHHHHHHHHHCCCEEEEEcCCCCccCccHHHHhhchhhhhhhhhhhHHHHHHhcCC
Confidence            999999999999999 99999999999999999999999999986542                        112 2358


Q ss_pred             chhcccccccccccc
Q 024956          205 DEVINSLLDLRPEKW  219 (260)
Q Consensus       205 ~~~v~~~~~l~~~~~  219 (260)
                      +++++++.+|...+.
T Consensus       243 d~v~~~~~el~~~l~  257 (267)
T 1swv_A          243 HFTIETMQELESVME  257 (267)
T ss_dssp             SEEESSGGGHHHHHH
T ss_pred             ceeccCHHHHHHHHH
Confidence            999999999987764

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.96  E-value=3.3e-29  Score=196.76  Aligned_cols=206  Identities=15%  Similarity=0.232  Sum_probs=149.7

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh---------hhhhhccCC------CHHHHHHHHHHHhCCCCCH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG---------REKHKIVGK------TPLEEAAIIVEDYGLPCAK   72 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~------~~~~~~~~~~~~~~~~~~~   72 (260)
                      ++|+|+||+||||+|+...+..++..+ ...+.....         .......+.      .....+..++..++.....
T Consensus         3 m~k~viFDlDGTL~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (232)
T 1zrn_A            3 YIKGIAFDLYGTLFDVHSVVGRCDEAF-PGRGREISALWRQKQLEYTWLRSLMNRYVNFQQATEDALRFTCRHLGLDLDA   81 (232)
T ss_dssp             CCCEEEECSBTTTEETHHHHHHHHHHS-TTTHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHTCCCCH
T ss_pred             CceEEEEecCCcccCchhhHHHHHHHc-cccHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCCCCH
Confidence            579999999999999977655444311 000000000         000000010      0122334444555554332


Q ss_pred             HHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChH
Q 024956           73 HEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD  152 (260)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~  152 (260)
                      .. ..    .+...+....++|++.++|+.|+++|++++++||+....+...+ +.+++..+|+.+++++..+..||++.
T Consensus        82 ~~-~~----~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~  155 (232)
T 1zrn_A           82 RT-RS----TLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVV-SHAGLRDGFDHLLSVDPVQVYKPDNR  155 (232)
T ss_dssp             HH-HH----HHHHGGGGCEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEESGGGTCCTTSHH
T ss_pred             HH-HH----HHHHHHccCCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HhcChHhhhheEEEecccCCCCCCHH
Confidence            21 11    22333446788999999999999999999999999999888888 88999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc-ccccccchhccccccccccccC
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT-HRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      .++.+++++|++|+++++|||+.+|+.+|+.+|+.+++++++.... .....++++++++.++...+..
T Consensus       156 ~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l~~  224 (232)
T 1zrn_A          156 VYELAEQALGLDRSAILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVELFET  224 (232)
T ss_dssp             HHHHHHHHHTSCGGGEEEEESCHHHHHHHHHHTCCEEEECTTCCCCCSSSCCCSEEESSHHHHHTTC--
T ss_pred             HHHHHHHHcCCCcccEEEEeCCHHHHHHHHHcCCEEEEEcCCCCCccccCCCCCEEECCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999998854332 3356789999999999877653

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.96  E-value=8.4e-29  Score=196.59  Aligned_cols=204  Identities=17%  Similarity=0.218  Sum_probs=159.8

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh-hccCCC--------------------HHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KIVGKT--------------------PLEEAAIIVED   65 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~--------------------~~~~~~~~~~~   65 (260)
                      +++|+|+||+||||+|+...+...+.++++++|.+....... .+.+..                    ....+..+++.
T Consensus        13 ~~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (254)
T 3umg_A           13 RNVRAVLFDTFGTVVDWRTGIATAVADYAARHQLEVDAVAFADRWRARYQPSMDAILSGAREFVTLDILHRENLDFVLRE   92 (254)
T ss_dssp             SBCCEEEECCBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCceecCchHHHHHHHHHHHHhcCCCCHHHHHHHHHHhHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHH
Confidence            468999999999999998888899999999998776554332 222210                    12233444555


Q ss_pred             hCC---CCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc
Q 024956           66 YGL---PCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD  142 (260)
Q Consensus        66 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~  142 (260)
                      ++.   .....     ....+...+....++|++.++|+.|++. ++++++||+....+...+ +.+|+.  |+.+++++
T Consensus        93 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~~~--f~~~~~~~  163 (254)
T 3umg_A           93 SGIDPTNHDSG-----ELDELARAWHVLTPWPDSVPGLTAIKAE-YIIGPLSNGNTSLLLDMA-KNAGIP--WDVIIGSD  163 (254)
T ss_dssp             TTCCGGGSCHH-----HHHHHHGGGGSCCBCTTHHHHHHHHHHH-SEEEECSSSCHHHHHHHH-HHHTCC--CSCCCCHH
T ss_pred             hCCCcCcCCHH-----HHHHHHHHHhhCcCCcCHHHHHHHHHhC-CeEEEEeCCCHHHHHHHH-HhCCCC--eeEEEEcC
Confidence            554   22211     1222333445678899999999999997 999999999999888888 778885  89999999


Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC----CCCcc-c--cccccchhcccccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS----LPKQT-H--RYTAADEVINSLLDLR  215 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~----~~~~~-~--~~~~~~~~v~~~~~l~  215 (260)
                      ..+..||++.+++.+++++|++|+++++|||+.||+.+|+.+|+.+++++.    +.... .  ....++++++++.+|.
T Consensus       164 ~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~el~  243 (254)
T 3umg_A          164 INRKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNGDLEAAHATGLATAFILRPVEHGPHQTDDLAPTGSWDISATDITDLA  243 (254)
T ss_dssp             HHTCCTTSHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSCSSCSSCCSEEESSHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHcCCChHHEEEEeCChHhHHHHHHCCCEEEEEecCCcCCCCccccccccCCCceEECCHHHHH
Confidence            999999999999999999999999999999999999999999999999994    32222 2  2567899999999998


Q ss_pred             cccc
Q 024956          216 PEKW  219 (260)
Q Consensus       216 ~~~~  219 (260)
                      ..+.
T Consensus       244 ~~l~  247 (254)
T 3umg_A          244 AQLR  247 (254)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.8e-28  Score=192.16  Aligned_cols=206  Identities=18%  Similarity=0.198  Sum_probs=150.7

Q ss_pred             ccc-ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-----------hhccCCCHHH----HHHHHHHHhCCC
Q 024956            6 KKL-MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-----------HKIVGKTPLE----EAAIIVEDYGLP   69 (260)
Q Consensus         6 ~~~-~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~----~~~~~~~~~~~~   69 (260)
                      |++ +|+|+||+||||+++...+...+..+++.+...-.....           ....+.....    ..+......+..
T Consensus         4 M~~mik~i~fDlDGTL~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (234)
T 3ddh_A            4 MKELIKVIAFDADDTLWSNEPFFQEVEKQYTDLLKPYGTSKEISAALFQTEMNNLQILGYGAKAFTISMVETALQISNGK   83 (234)
T ss_dssp             CTTTCCEEEECCBTTTBCCHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTHHHHCSSHHHHHHHHHHHHHHHTTTC
T ss_pred             hhhcccEEEEeCCCCCccCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhhhcCCcchhHHHHHHHHHHHhcCC
Confidence            344 899999999999999888877776665544322122221           1234444333    233333344444


Q ss_pred             CCHHHHHHHHHHHHHhh-hccCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC
Q 024956           70 CAKHEFVNEVYSMFSDH-LCKVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG  147 (260)
Q Consensus        70 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~  147 (260)
                      ...+. ...+.+.+.+. .....++|++.++++.|++.| ++++++|+.....+...+ +.+++..+|+.++++     .
T Consensus        84 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l-~~~~~~~~f~~~~~~-----~  156 (234)
T 3ddh_A           84 IAADI-IRQIVDLGKSLLKMPIELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKL-ERSGLSPYFDHIEVM-----S  156 (234)
T ss_dssp             CCHHH-HHHHHHHHHHHTTCCCCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHH-HHHTCGGGCSEEEEE-----S
T ss_pred             CCHHH-HHHHHHHHHHHhhccCCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHH-HHhCcHhhhheeeec-----C
Confidence            44333 33444444333 345788999999999999999 999999999988888888 888999999998864     5


Q ss_pred             CCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCC----CCccccccc-cchhccccccccccc
Q 024956          148 KPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSL----PKQTHRYTA-ADEVINSLLDLRPEK  218 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~----~~~~~~~~~-~~~~v~~~~~l~~~~  218 (260)
                      ||++..++.+++++|++|+++++|||++ ||+.||+.+|+.++++..+    ......... ++++++++.||.+.+
T Consensus       157 kpk~~~~~~~~~~lgi~~~~~i~iGD~~~~Di~~a~~aG~~~v~v~~~~~~g~~~~~~~~~~~d~v~~~l~el~~~l  233 (234)
T 3ddh_A          157 DKTEKEYLRLLSILQIAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFEVMWKHEVTETFAHERLKQVKRLDDLLSLL  233 (234)
T ss_dssp             CCSHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHTCEEEECCCCTTCCCC---CCCCTTEEECSSGGGHHHHC
T ss_pred             CCCHHHHHHHHHHhCCCcceEEEECCCcHHHhHHHHHCCCeEEEecCCcccccCCcccccCCCceecccHHHHHHhc
Confidence            8999999999999999999999999997 9999999999999999543    333333334 499999999987654

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.96  E-value=6.8e-29  Score=196.12  Aligned_cols=206  Identities=16%  Similarity=0.235  Sum_probs=149.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC---------ChhhhhhccCC--C----HHHHHHHHHHHhCCCCC
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW---------DGREKHKIVGK--T----PLEEAAIIVEDYGLPCA   71 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~--~----~~~~~~~~~~~~~~~~~   71 (260)
                      |++|+|+||+||||+|+...+..++..+ ...+...         .........+.  .    ....+..++..++....
T Consensus        12 M~~k~viFDlDGTL~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (240)
T 2no4_A           12 DSLRACVFDAYGTLLDVHSAVMRNADEV-GASAEALSMLWRQRQLEYSWTRTLMHQYADFWQLTDEALTFALRTYHLEDR   90 (240)
T ss_dssp             SCCCEEEECCBTTTBCTTHHHHTTHHHH-CTTHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCTTH
T ss_pred             ccccEEEEeCCCcccccHhHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCCCCC
Confidence            3589999999999999876654333311 0000000         00000001111  0    11223334444444321


Q ss_pred             HHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCCh
Q 024956           72 KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP  151 (260)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~  151 (260)
                       .+..+.    +...+....++|++.++|+.|+++|++++++||+....+...+ +.+|+..+|+.+++++..+..||++
T Consensus        91 -~~~~~~----~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~  164 (240)
T 2no4_A           91 -KGLKDR----LMSAYKELSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAAL-KASKLDRVLDSCLSADDLKIYKPDP  164 (240)
T ss_dssp             -HHHHHH----HHHHHHTCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGGGTTCCTTSH
T ss_pred             -HHHHHH----HHHHHhcCCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HhcCcHHHcCEEEEccccCCCCCCH
Confidence             111222    2223345789999999999999999999999999999888888 8899999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccccccc-chhcccccccccccc
Q 024956          152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAA-DEVINSLLDLRPEKW  219 (260)
Q Consensus       152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~  219 (260)
                      ..++.+++++|++|+++++|||+.+|+.+|+.+|+.++++.++.........+ +++++++.+|...+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~iGD~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~~~~el~~~l~  233 (240)
T 2no4_A          165 RIYQFACDRLGVNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQGNPPEYEFAPLKHQVNSLSELWPLLA  233 (240)
T ss_dssp             HHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHTCEEEEECTTCCCCCCTTSCCSEEESSGGGHHHHHC
T ss_pred             HHHHHHHHHcCCCcccEEEEeCCHHHHHHHHHCCCEEEEECCCCCCCcccCCCCceeeCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999865533334567 899999999987764

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.96  E-value=6.1e-29  Score=197.73  Aligned_cols=205  Identities=17%  Similarity=0.238  Sum_probs=159.2

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh-hccCC----------------C----HHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KIVGK----------------T----PLEEAAIIVE   64 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~----------------~----~~~~~~~~~~   64 (260)
                      .|++|+|+||+||||+|+...+...+.++++++|......... .+.+.                .    ....+..+++
T Consensus        19 ~m~ik~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (254)
T 3umc_A           19 FQGMRAILFDVFGTLVDWRSSLIEQFQALERELGGTLPCVELTDRWRQQYKPAMDRVRNGQAPWQHLDQLHRQSLEALAG   98 (254)
T ss_dssp             SSSCCEEEECCBTTTEEHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHTHHHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred             ccCCcEEEEeCCCccEecCccHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcccCCcccHHHHHHHHHHHHHH
Confidence            3568999999999999998888899999999998776554321 11110                0    1122344445


Q ss_pred             HhCCCCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956           65 DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~  144 (260)
                      .++.......     ...+...+....++|++.++|+.|++. ++++++||.....+...+ +.+|+.  |+.+++++.+
T Consensus        99 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~g~~--f~~~~~~~~~  169 (254)
T 3umc_A           99 EFGLALDEAL-----LQRITGFWHRLRPWPDTLAGMHALKAD-YWLAALSNGNTALMLDVA-RHAGLP--WDMLLCADLF  169 (254)
T ss_dssp             HTTCCCCHHH-----HHHHHGGGGSCEECTTHHHHHHHHTTT-SEEEECCSSCHHHHHHHH-HHHTCC--CSEECCHHHH
T ss_pred             HhCCCCCHHH-----HHHHHHHHhcCCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHH-HHcCCC--cceEEeeccc
Confidence            5554433221     122233445678899999999999986 999999999998888888 778885  8999999999


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC----CCC-cccc--ccccchhcccccccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS----LPK-QTHR--YTAADEVINSLLDLRPE  217 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~----~~~-~~~~--~~~~~~~v~~~~~l~~~  217 (260)
                      +..||++.+|+.+++++|++|+++++|||+.||+.||+.+|+.++++++    +.. ....  ...|+++++++.||.+.
T Consensus       170 ~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~~~g~~~~~~l~~~~~ad~v~~~l~el~~~  249 (254)
T 3umc_A          170 GHYKPDPQVYLGACRLLDLPPQEVMLCAAHNYDLKAARALGLKTAFIARPLEYGPGQSQDLAAEQDWDLIASDLLDLHRQ  249 (254)
T ss_dssp             TCCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHTTCEEEEECCTTTTCTTCCSSSSCSSCCSEEESSHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHcCCChHHEEEEcCchHhHHHHHHCCCeEEEEecCCccCCCCCcccccCCCCcEEECCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999993    332 2222  56789999999999877


Q ss_pred             cc
Q 024956          218 KW  219 (260)
Q Consensus       218 ~~  219 (260)
                      +.
T Consensus       250 l~  251 (254)
T 3umc_A          250 LA  251 (254)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-28  Score=198.03  Aligned_cols=203  Identities=21%  Similarity=0.323  Sum_probs=160.0

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh-hhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      ++|+|+||+||||+|+...+...+.+++++++. .... ......|.......+.+.....    ..+....+...+...
T Consensus        34 ~ik~iifDlDGTLlds~~~~~~~~~~~~~~~g~-~~~~~~~~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  108 (275)
T 2qlt_A           34 KINAALFDVDGTIIISQPAIAAFWRDFGKDKPY-FDAEHVIHISHGWRTYDAIAKFAPDFA----DEEYVNKLEGEIPEK  108 (275)
T ss_dssp             EESEEEECCBTTTEECHHHHHHHHHHHHTTCTT-CCHHHHHHHCTTCCHHHHHHHHCGGGC----CHHHHHHHHHTHHHH
T ss_pred             cCCEEEECCCCCCCCCHHHHHHHHHHHHHHcCC-CCHHHHHHHhcCCCHHHHHHHHhccCC----cHHHHHHHHHHHHHH
Confidence            479999999999999998888888888888773 2332 3345567766655554433211    123333333333332


Q ss_pred             -hccCCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC-
Q 024956           87 -LCKVKALPGANRLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM-  163 (260)
Q Consensus        87 -~~~~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~-  163 (260)
                       .....++|++.++|+.|++. |++++++|++....+...+ +.+++. .|+.++++++....||+++.+..+++++|+ 
T Consensus       109 ~~~~~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l-~~~~l~-~f~~i~~~~~~~~~kp~~~~~~~~~~~lgi~  186 (275)
T 2qlt_A          109 YGEHSIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWF-DILKIK-RPEYFITANDVKQGKPHPEPYLKGRNGLGFP  186 (275)
T ss_dssp             HCTTCEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHH-HHHTCC-CCSSEECGGGCSSCTTSSHHHHHHHHHTTCC
T ss_pred             HhcCCCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHH-HHcCCC-ccCEEEEcccCCCCCCChHHHHHHHHHcCCC
Confidence             24567899999999999999 9999999999998888888 777876 488899999899999999999999999999 


Q ss_pred             ------CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccc-cccchhcccccccccc
Q 024956          164 ------EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY-TAADEVINSLLDLRPE  217 (260)
Q Consensus       164 ------~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~-~~~~~~v~~~~~l~~~  217 (260)
                            +|+++++|||+.||++||+.+|+.++++.++....... ..++++++++.++...
T Consensus       187 ~~~~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v~~~~~~~~~~~~~ad~v~~~~~el~~~  247 (275)
T 2qlt_A          187 INEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIATTFDLDFLKEKGCDIIVKNHESIRVG  247 (275)
T ss_dssp             CCSSCGGGSCEEEEESSHHHHHHHHHTTCEEEEESSSSCHHHHTTSSCSEEESSGGGEEEC
T ss_pred             ccccCCCcceEEEEeCCHHHHHHHHHcCCEEEEECCCCCHHHHhhCCCCEEECChHHcChh
Confidence                  99999999999999999999999999999865544433 4689999999998653

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.96  E-value=4.5e-29  Score=192.56  Aligned_cols=193  Identities=19%  Similarity=0.205  Sum_probs=148.2

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-H
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF-S   84 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   84 (260)
                      ++++|+|+||+||||+++...+    .+++++.|..........+.+....               .......+...+ .
T Consensus         3 ~~~~k~iifDlDGTL~d~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~   63 (205)
T 3m9l_A            3 LSEIKHWVFDMDGTLTIAVHDF----AAIREALSIPAEDDILTHLAALPAD---------------ESAAKHAWLLEHER   63 (205)
T ss_dssp             GGGCCEEEECTBTTTEEEEECH----HHHHHHTTCCTTSCHHHHHHHSCHH---------------HHHHHHHHHHHTHH
T ss_pred             cccCCEEEEeCCCcCcccHHHH----HHHHHHhCCCchHHHHHHHhcCChH---------------HHHHHHHHHHHHHH
Confidence            3568999999999999975433    3566677766543322222111110               011111222222 2


Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .......++|++.++|+.|+++|++++++|++....+...+ +.+|+..+|  +.+++.+. +..||++..++.+++++|
T Consensus        64 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l-~~~~l~~~f~~~~i~~~~~-~~~kp~~~~~~~~~~~~g  141 (205)
T 3m9l_A           64 DLAQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTL-EAIGLADCFAEADVLGRDE-APPKPHPGGLLKLAEAWD  141 (205)
T ss_dssp             HHEEEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGSCGGGEECTTT-SCCTTSSHHHHHHHHHTT
T ss_pred             HHhhcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHH-HHcCchhhcCcceEEeCCC-CCCCCCHHHHHHHHHHcC
Confidence            23346788999999999999999999999999999998888 889999999  78887766 889999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCC
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      ++|+++++|||+.+|+.+|+.+|+.++++.++.  ...+..++++++++.||...+...
T Consensus       142 ~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~~--~~~~~~ad~v~~~~~el~~~~~~~  198 (205)
T 3m9l_A          142 VSPSRMVMVGDYRFDLDCGRAAGTRTVLVNLPD--NPWPELTDWHARDCAQLRDLLSAE  198 (205)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEECSSSS--CSCGGGCSEECSSHHHHHHHHHHT
T ss_pred             CCHHHEEEECCCHHHHHHHHHcCCEEEEEeCCC--CcccccCCEEeCCHHHHHHHHHhc
Confidence            999999999999999999999999999998854  234567999999999998877543

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.96  E-value=1.8e-29  Score=198.25  Aligned_cols=207  Identities=18%  Similarity=0.203  Sum_probs=153.9

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHH---HHcCCCCCh----------hhhhhccCCCH-------HHHHHHHHHHhC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFL---VKYGKEWDG----------REKHKIVGKTP-------LEEAAIIVEDYG   67 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~---~~~~~~~~~----------~~~~~~~g~~~-------~~~~~~~~~~~~   67 (260)
                      |+|+|+||+||||+++...+......+.   .+.|.....          ..+....+...       ...+..+...++
T Consensus         1 Mik~i~fDlDGTL~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   80 (234)
T 3u26_A            1 MIRAVFFDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPLRDILEEVMRKLAEKYG   80 (234)
T ss_dssp             CCCEEEECSTTTTBCHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHHHHHTTSBCCCHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEcCCCccccccchhHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHHHHHHcC
Confidence            3799999999999998765444333333   333432110          11112222211       123444455554


Q ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC
Q 024956           68 LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG  147 (260)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~  147 (260)
                      .... ....+.   ..........++|++.++|+.|++. ++++++||+....+...+ +.+++..+|+.+++++..+..
T Consensus        81 ~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~~~~~f~~~~~~~~~~~~  154 (234)
T 3u26_A           81 FKYP-ENFWEI---SLRMSQRYGELYPEVVEVLKSLKGK-YHVGMITDSDTEQAMAFL-DALGIKDLFDSITTSEEAGFF  154 (234)
T ss_dssp             CCCC-TTHHHH---HHHHHHHHCCBCTTHHHHHHHHTTT-SEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEHHHHTBC
T ss_pred             chHH-HHHHHH---HHHHHHhhCCcCcCHHHHHHHHHhC-CcEEEEECCCHHHHHHHH-HHcCcHHHcceeEeccccCCC
Confidence            4211 111111   1112223567899999999999999 999999999999888888 889999999999999999999


Q ss_pred             CCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccC
Q 024956          148 KPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      ||++..++.+++++|++|+++++|||+. ||+.||+.+|+.+++++++.........++++++++.++...+..
T Consensus       155 kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~a~~~~~~~~el~~~l~~  228 (234)
T 3u26_A          155 KPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVDE  228 (234)
T ss_dssp             TTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHTTTCEEEEECSSSTTGGGGGGCSEEESSTHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHcCCCchhEEEEcCCcHHHHHHHHHcCCEEEEECCCCCccccccCCCEeeCCHHHHHHHHHH
Confidence            9999999999999999999999999998 999999999999999999766666666899999999999887653

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.96  E-value=1.2e-28  Score=197.30  Aligned_cols=125  Identities=12%  Similarity=0.082  Sum_probs=109.5

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHh---hcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISY---QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~---~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ....++|++.++|+.|+++|++++|+||++...++..+ +   ..++..+|+.++++ +++ .||+|+.|+.+++++|++
T Consensus       127 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l-~~~~~~~l~~~fd~i~~~-~~~-~KP~p~~~~~~~~~lg~~  203 (261)
T 1yns_A          127 MKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLF-GHSTEGDILELVDGHFDT-KIG-HKVESESYRKIADSIGCS  203 (261)
T ss_dssp             CCBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HTBTTBCCGGGCSEEECG-GGC-CTTCHHHHHHHHHHHTSC
T ss_pred             cccccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHH-HhhcccChHhhccEEEec-CCC-CCCCHHHHHHHHHHhCcC
Confidence            45789999999999999999999999999998888777 5   34699999999988 788 999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc--cccccchhcccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--RYTAADEVINSLLDLR  215 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~--~~~~~~~~v~~~~~l~  215 (260)
                      |++|+||||+.+|+.+|+++|+.++++.++.....  ....++++++++.+|.
T Consensus       204 p~~~l~VgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~~~i~~l~el~  256 (261)
T 1yns_A          204 TNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSELY  256 (261)
T ss_dssp             GGGEEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGCB
T ss_pred             cccEEEEcCCHHHHHHHHHCCCEEEEEeCCCCCcccccccCCCEEECCHHHhC
Confidence            99999999999999999999999999987433221  2356888999998874

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.96  E-value=1.8e-28  Score=192.19  Aligned_cols=206  Identities=18%  Similarity=0.258  Sum_probs=152.1

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHH---cCCCCCh---hhhhhc----------cCCC----HHHHHHHHHHHhC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVK---YGKEWDG---REKHKI----------VGKT----PLEEAAIIVEDYG   67 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~----------~g~~----~~~~~~~~~~~~~   67 (260)
                      |+|+|+||+||||+++...+......+++.   .+.....   ..+...          ....    .......++...+
T Consensus         1 mik~i~fDlDGTL~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (230)
T 3vay_A            1 MIKLVTFDLDDTLWDTAPAIVGAEAALRDWLAEQAPKLGPVPVEHLWEIRSRLLDEDPSFKHRISALRRRVLFHALEDAG   80 (230)
T ss_dssp             CCCEEEECCBTTTBCSHHHHHHHHHHHHHHHHHHCTTTCSCCHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHTTT
T ss_pred             CeeEEEecCcccCcCCchHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHhC
Confidence            479999999999999987776655554433   2322211   111000          0000    1123344455555


Q ss_pred             CCCC-HHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCC
Q 024956           68 LPCA-KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT  146 (260)
Q Consensus        68 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~  146 (260)
                      ++.. ...+.....+.+........++|++.++|+.|++. ++++++||+...     + +.+++..+|+.+++++..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~-----l-~~~~l~~~f~~~~~~~~~~~  153 (230)
T 3vay_A           81 YDSDEAQQLADESFEVFLHGRHQVQIFPEVQPTLEILAKT-FTLGVITNGNAD-----V-RRLGLADYFAFALCAEDLGI  153 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTCCCBCTTHHHHHHHHHTT-SEEEEEESSCCC-----G-GGSTTGGGCSEEEEHHHHTC
T ss_pred             CChhhhHHHHHHHHHHHHHhhccCccCcCHHHHHHHHHhC-CeEEEEECCchh-----h-hhcCcHHHeeeeEEccccCC
Confidence            5411 11233333444444455688999999999999998 999999998865     5 77899999999999999999


Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccC
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      .||++..++.+++++|++|+++++|||+. +|+.+|+.+|+.+++++++.........++++++++.+|.+.+.+
T Consensus       154 ~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~l~el~~~l~~  228 (230)
T 3vay_A          154 GKPDPAPFLEALRRAKVDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQGKAWDADRLPDAEIHNLSQLPEVLAR  228 (230)
T ss_dssp             CTTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEECTTCCCCCSSSCCSEEESSGGGHHHHHHT
T ss_pred             CCcCHHHHHHHHHHhCCCchheEEEeCChHHHHHHHHHCCCEEEEEcCCCCCCcccCCCCeeECCHHHHHHHHHh
Confidence            99999999999999999999999999998 999999999999999998655444367889999999999887653

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.96  E-value=2.2e-27  Score=188.67  Aligned_cols=204  Identities=14%  Similarity=0.121  Sum_probs=151.6

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHH---HcCCCC---Chhh-----hh--hccCCCHHHHHHHHH----HHhCCCC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLV---KYGKEW---DGRE-----KH--KIVGKTPLEEAAIIV----EDYGLPC   70 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~---~~~~~~---~~~~-----~~--~~~g~~~~~~~~~~~----~~~~~~~   70 (260)
                      ++|+|+||+||||+|+...+...+.++++   +.|...   ....     ..  ...|.......+.+.    ...+...
T Consensus        12 ~~k~iifDlDGTL~d~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   91 (251)
T 2pke_A           12 AIQLVGFDGDDTLWKSEDYYRTAEADFEAILSGYLDLGDSRMQQHLLAVERRNLKIFGYGAKGMTLSMIETAIELTEARI   91 (251)
T ss_dssp             SCCEEEECCBTTTBCCHHHHHHHHHHHHHHHTTTCCC-----CTTHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHTTTCC
T ss_pred             ceeEEEEeCCCCCccCcHhHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHhhhhhhccCcchHHHHHHHHHHHHhcCCCC
Confidence            58999999999999999888888887774   556543   1111     11  245666655544443    2334333


Q ss_pred             CHHHHHHHHHHHHHhh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCC
Q 024956           71 AKHEFVNEVYSMFSDH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKP  149 (260)
Q Consensus        71 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp  149 (260)
                      . ......+.+.+... .....++|++.++|+.|+ .|++++++|++....+...+ +.+++..+|+.++++     .||
T Consensus        92 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~i~~~-----~kp  163 (251)
T 2pke_A           92 E-ARDIQRIVEIGRATLQHPVEVIAGVREAVAAIA-ADYAVVLITKGDLFHQEQKI-EQSGLSDLFPRIEVV-----SEK  163 (251)
T ss_dssp             C-HHHHHHHHHHHHHHHTCCCCBCTTHHHHHHHHH-TTSEEEEEEESCHHHHHHHH-HHHSGGGTCCCEEEE-----SCC
T ss_pred             C-hHHHHHHHHHHHHHHhccCCcCccHHHHHHHHH-CCCEEEEEeCCCHHHHHHHH-HHcCcHHhCceeeee-----CCC
Confidence            3 23334444444333 345788999999999999 89999999999988888888 888999999988764     689


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc----c-c-ccccch-hcccccccccccc
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----H-R-YTAADE-VINSLLDLRPEKW  219 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~----~-~-~~~~~~-~v~~~~~l~~~~~  219 (260)
                      +++.+..+++++|++|+++++|||+. ||+.+|+.+|+.++++.++....    . . ...+++ +++++.||...+.
T Consensus       164 ~~~~~~~~~~~l~~~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~~el~~~l~  241 (251)
T 2pke_A          164 DPQTYARVLSEFDLPAERFVMIGNSLRSDVEPVLAIGGWGIYTPYAVTWAHEQDHGVAADEPRLREVPDPSGWPAAVR  241 (251)
T ss_dssp             SHHHHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHTTCEEEECCCC-------------CCTTEEECSSGGGHHHHHH
T ss_pred             CHHHHHHHHHHhCcCchhEEEECCCchhhHHHHHHCCCEEEEECCCCccccccccccccCCCCeeeeCCHHHHHHHHH
Confidence            99999999999999999999999999 99999999999999998754211    1 1 346787 8999999877654

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.96  E-value=3.3e-27  Score=187.52  Aligned_cols=202  Identities=11%  Similarity=0.046  Sum_probs=138.8

Q ss_pred             ccccEEEEecCCccccCHHH-------HHHHHHHHHHHcCCCCCh-hhhhhccCCCHHHHHHHHHHHhCCCCCHHHHH--
Q 024956            7 KLMSCVILDLDGTLLNTDGM-------FSEVLKTFLVKYGKEWDG-REKHKIVGKTPLEEAAIIVEDYGLPCAKHEFV--   76 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--   76 (260)
                      +++|+|+||+||||+|+...       ....+...+...+..... .....+.+.+.....+.+...++.........  
T Consensus        29 ~~ikaviFDlDGTLvDs~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~  108 (253)
T 2g80_A           29 DNYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQAHILELVAKDVKDPILKQL  108 (253)
T ss_dssp             CCCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHHHHHSCCTTSHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred             CCCcEEEEcCCCCcccccccchhhHHHHHHHHHHHHHHhcCcHHHHHHHHHhhhccHHHHHHHHHHHHhcccchHHHHHH
Confidence            45899999999999998643       333444455555543221 22233445555555555555443322211111  


Q ss_pred             --HHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc-----------CCccccceEEeccc
Q 024956           77 --NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH-----------GWNESFSVIVGSDE  143 (260)
Q Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~-----------gl~~~f~~i~~~~~  143 (260)
                        ..+...+........++||+.++|++    |++++|+||++...++..+ +..           ++..+|+.++.+ .
T Consensus       109 ~~~~~~~~~~~~~~~~~~~pgv~e~L~~----g~~l~i~Tn~~~~~~~~~l-~~~~~g~~~~~~~l~l~~~~~~~f~~-~  182 (253)
T 2g80_A          109 QGYVWAHGYESGQIKAPVYADAIDFIKR----KKRVFIYSSGSVKAQKLLF-GYVQDPNAPAHDSLDLNSYIDGYFDI-N  182 (253)
T ss_dssp             HHHHHHHHHHTTSCCBCCCHHHHHHHHH----CSCEEEECSSCHHHHHHHH-HSBCCTTCTTSCCBCCGGGCCEEECH-H
T ss_pred             HHHHHHHHHHhCcccCCCCCCHHHHHHc----CCEEEEEeCCCHHHHHHHH-HhhcccccccccccchHhhcceEEee-e
Confidence              12333333333356889999999988    8999999999999888888 554           477778877765 3


Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL  214 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l  214 (260)
                      +...||+|+.|..+++++|++|++|+||||+.+|+.+|+++|+.++++++..........++.+++++.||
T Consensus       183 ~~g~KP~p~~~~~a~~~lg~~p~~~l~vgDs~~di~aA~~aG~~~i~v~~~~~~~~~~~~~~~~i~~l~eL  253 (253)
T 2g80_A          183 TSGKKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNFETL  253 (253)
T ss_dssp             HHCCTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSCCCCSSCCSCEESCSTTC
T ss_pred             ccCCCCCHHHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEEcCCCCCCcccccCCCccCChhhC
Confidence            31269999999999999999999999999999999999999999999987322221122367788888765

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.95  E-value=6.1e-27  Score=178.18  Aligned_cols=176  Identities=22%  Similarity=0.233  Sum_probs=138.4

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL   87 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (260)
                      ++|+|+||+||||+|+...+...+.++++++|............+....   ..+.......   ..+...+...+....
T Consensus         5 ~~k~i~fDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~   78 (190)
T 2fi1_A            5 KYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTP---FAIETFAPNL---ENFLEKYKENEAREL   78 (190)
T ss_dssp             CCSEEEECTBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCHH---HHHHHHCTTC---TTHHHHHHHHHHHHT
T ss_pred             cccEEEEeCCCCcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHccccH---HHHHHHhhhH---HHHHHHHHHHHHHhc
Confidence            4899999999999999888888999999999887665554433322111   2222222211   222333444444434


Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ....++|++.++++.|+++|++++++|+... .+...+ +.+++..+|+.+++++..+..||+++.++.+++++|++  +
T Consensus        79 ~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~-~~~~~l-~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~--~  154 (190)
T 2fi1_A           79 EHPILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEIL-EKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQIS--S  154 (190)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHH-HHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTCS--S
T ss_pred             CcCccCcCHHHHHHHHHHCCCcEEEEECCcH-HHHHHH-HHcCCHhheeeeeeccccCCCCCCHHHHHHHHHHcCCC--e
Confidence            3444899999999999999999999998864 566677 88899999999999999999999999999999999998  9


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +++|||+.||+++|+.+|+.++++++
T Consensus       155 ~~~iGD~~~Di~~a~~aG~~~~~~~~  180 (190)
T 2fi1_A          155 GLVIGDRPIDIEAGQAAGLDTHLFTS  180 (190)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEECSC
T ss_pred             EEEEcCCHHHHHHHHHcCCeEEEECC
Confidence            99999999999999999999999987

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.95  E-value=6e-27  Score=189.41  Aligned_cols=208  Identities=14%  Similarity=0.151  Sum_probs=148.7

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHc---CCCCChhhhhhccCC---CHHHHHHHHHHHhCCCCCHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKY---GKEWDGREKHKIVGK---TPLEEAAIIVEDYGLPCAKHEFVNEV   79 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (260)
                      ..++|+|+||+||||+++...+...+...+.++   +..............   .....+..+....++.  ...+    
T Consensus        54 ~~~~k~i~FDlDGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~----  127 (282)
T 3nuq_A           54 NPNLKVFFFDIDNCLYKSSTRIHDLMQQSILRFFQTHLKLSPEDAHVLNNSYYKEYGLAIRGLVMFHKVN--ALEY----  127 (282)
T ss_dssp             -CCCCEEEECCTTTTSCCCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHTHHHHHHHHHTTSSC--HHHH----
T ss_pred             CCCCCEEEEecCCCcccCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhHHHHHHHcCCC--HHHH----
Confidence            346799999999999999777766666666553   222333222111000   0001223334444432  2222    


Q ss_pred             HHHHHhh---hccCCCCccHHHHHHHHHHCCC--cEEEEeCCChHhHHHHHHhhcCCccccceEEecccc----CCCCCC
Q 024956           80 YSMFSDH---LCKVKALPGANRLIKHLSCHGV--PMALASNSHRATIESKISYQHGWNESFSVIVGSDEV----RTGKPS  150 (260)
Q Consensus        80 ~~~~~~~---~~~~~~~~~~~~~l~~l~~~g~--~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~----~~~kp~  150 (260)
                      ...+...   .....++|++.++|+.|++.|+  +++++||+....+...+ +.+|+..+|+.+++++..    ...||+
T Consensus       128 ~~~~~~~~~~~~~~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l-~~~gl~~~fd~v~~~~~~~~~~~~~Kp~  206 (282)
T 3nuq_A          128 NRLVDDSLPLQDILKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCL-RLLGIADLFDGLTYCDYSRTDTLVCKPH  206 (282)
T ss_dssp             HHHHTTTSCGGGTCCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHH-HHHTCTTSCSEEECCCCSSCSSCCCTTS
T ss_pred             HHHHhhhhhhhhccCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHH-HhCCcccccceEEEeccCCCcccCCCcC
Confidence            2222222   2347789999999999999999  99999999999988888 889999999999987654    567999


Q ss_pred             hHHHHHHHHHcCCCC-CcEEEEecCHhhHHHHHHcCCe-EEEEcCCCCcc--ccccccchhccccccccccccC
Q 024956          151 PDIFLEAAKRLNMEP-SSSLVIEDSVIGVVAGKAAGME-VVAVPSLPKQT--HRYTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~-~~~~~vGD~~~Dv~~a~~~G~~-~i~~~~~~~~~--~~~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +.+++.+++++|++| +++++|||+.+|+.||+.+|+. ++++..+....  .....++++++++.+|.+.+..
T Consensus       207 ~~~~~~~~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~ad~vi~sl~el~~~l~~  280 (282)
T 3nuq_A          207 VKAFEKAMKESGLARYENAYFIDDSGKNIETGIKLGMKTCIHLVENEVNEILGQTPEGAIVISDILELPHVVSD  280 (282)
T ss_dssp             HHHHHHHHHHHTCCCGGGEEEEESCHHHHHHHHHHTCSEEEEECSCCC----CCCCTTCEEESSGGGGGGTSGG
T ss_pred             HHHHHHHHHHcCCCCcccEEEEcCCHHHHHHHHHCCCeEEEEEcCCccccccccCCCCCEEeCCHHHHHHHhhh
Confidence            999999999999999 9999999999999999999995 55555433222  1245788999999999887653

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.95  E-value=2.5e-28  Score=187.82  Aligned_cols=195  Identities=17%  Similarity=0.212  Sum_probs=139.6

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHL   87 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (260)
                      +|+|+||+||||+|+...+.. +.......+.... ...+....+. ....++.++..++ .   ....+.+.+    .+
T Consensus         1 ik~iiFDlDGTL~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~---~~~~~~~~~----~~   70 (201)
T 2w43_A            1 MIILAFDIFGTVLDTSTVIQE-FRNKQLEYTWLLTIMGKYVEFEEI-TKITLRYILKVRG-E---ESKFDEELN----KW   70 (201)
T ss_dssp             CCEEEECCBTTTEEGGGSCHH-HHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHHHHTT-C---GGGHHHHHH----HH
T ss_pred             CcEEEEeCCCceecchhHHHH-HHHHHHHHHHHHHHccCcccHHHH-HHHHHHHHHHHhC-C---hHHHHHHHH----hh
Confidence            478999999999998654332 2222211110000 0000000010 1223344444443 1   111222222    23


Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ....++|++.+ |+.|+++ ++++++||+....++..+ +.+|+..+|+.+++++..+..||+++.+..+++++|  |++
T Consensus        71 ~~~~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~  145 (201)
T 2w43_A           71 KNLKAYEDTKY-LKEISEI-AEVYALSNGSINEVKQHL-ERNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDSIG--AKE  145 (201)
T ss_dssp             HTCEECGGGGG-HHHHHHH-SEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHHHT--CSC
T ss_pred             cccccCCChHH-HHHHHhC-CeEEEEeCcCHHHHHHHH-HHCCcHHhCcEEEehhhcCCCCCCHHHHHHHHHhcC--CCc
Confidence            35788999999 9999999 999999999988888888 889999999999999999999999999999999999  999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCCCCc-cccccccchhccccccccccc
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ-THRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~-~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      +++|||+.+|+.+|+.+|+.+++++++... ......++++++++.++.+.+
T Consensus       146 ~~~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~l  197 (201)
T 2w43_A          146 AFLVSSNAFDVIGAKNAGMRSIFVNRKNTIVDPIGGKPDVIVNDFKELYEWI  197 (201)
T ss_dssp             CEEEESCHHHHHHHHHTTCEEEEECSSSCCCCTTSCCCSEEESSHHHHHHHH
T ss_pred             EEEEeCCHHHhHHHHHCCCEEEEECCCCCCccccCCCCCEEECCHHHHHHHH
Confidence            999999999999999999999999885433 223456899999999987655

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.95  E-value=2.9e-27  Score=188.37  Aligned_cols=202  Identities=20%  Similarity=0.280  Sum_probs=145.7

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh---------hhhhhccCC--C----HHHHHHHHHHHhCCCCCHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG---------REKHKIVGK--T----PLEEAAIIVEDYGLPCAKH   73 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~g~--~----~~~~~~~~~~~~~~~~~~~   73 (260)
                      +|+|+||+||||+|+...+..++.. +...+.....         .......+.  .    ..+.+..++..++......
T Consensus         2 ~k~viFDlDGTL~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (253)
T 1qq5_A            2 IKAVVFDAYGTLFDVQSVADATERA-YPGRGEYITQVWRQKQLEYSWLRALMGRYADFWSVTREALAYTLGTLGLEPDES   80 (253)
T ss_dssp             CCEEEECTBTTTBCTTTTHHHHHHH-STTCHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             CcEEEEeCCCCCCccHhhHHHHHHH-HhhhhhHHHHHHHHhhhHHHHHHHHhcCcCcHHHHHHHHHHHHHHHhCCCCCHH
Confidence            6899999999999987655433331 1111000000         000001110  0    1123344445554433221


Q ss_pred             HHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHH
Q 024956           74 EFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI  153 (260)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~  153 (260)
                      .     ...+...+....++|++.++|+.|+  |++++++||+....+...+ +.+|+..+|+.+++++..+..||++..
T Consensus        81 ~-----~~~~~~~~~~~~~~~~~~~~l~~l~--g~~~~i~t~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~Kp~~~~  152 (253)
T 1qq5_A           81 F-----LADMAQAYNRLTPYPDAAQCLAELA--PLKRAILSNGAPDMLQALV-ANAGLTDSFDAVISVDAKRVFKPHPDS  152 (253)
T ss_dssp             H-----HHHHHGGGGSCCBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGGGGTCCTTSHHH
T ss_pred             H-----HHHHHHHHhcCCCCccHHHHHHHHc--CCCEEEEeCcCHHHHHHHH-HHCCchhhccEEEEccccCCCCCCHHH
Confidence            1     1223334456789999999999999  8999999999999888888 888999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC-----------------------CCCc-cccccccchhcc
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS-----------------------LPKQ-THRYTAADEVIN  209 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~-----------------------~~~~-~~~~~~~~~~v~  209 (260)
                      ++.+++++|++|+++++|||+.+|+.+|+.+|+.++++++                       +... ......++++++
T Consensus       153 ~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (253)
T 1qq5_A          153 YALVEEVLGVTPAEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVP  232 (253)
T ss_dssp             HHHHHHHHCCCGGGEEEEESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEES
T ss_pred             HHHHHHHcCCCHHHEEEEeCChhhHHHHHHCCCEEEEECCcccchhhhhcccccccccccccccccccCCCCCCCCeeeC
Confidence            9999999999999999999999999999999999999987                       2222 223467899999


Q ss_pred             cccccccccc
Q 024956          210 SLLDLRPEKW  219 (260)
Q Consensus       210 ~~~~l~~~~~  219 (260)
                      ++.++...+.
T Consensus       233 ~~~el~~~l~  242 (253)
T 1qq5_A          233 ALGDLPRLVR  242 (253)
T ss_dssp             SGGGHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999987764

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.95  E-value=7.1e-27  Score=180.82  Aligned_cols=177  Identities=17%  Similarity=0.171  Sum_probs=132.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCC-----------CHHHHHHHHHHHhCCCCCHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGK-----------TPLEEAAIIVEDYGLPCAKHEF   75 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~   75 (260)
                      +++|+|+||+||||+|+...+.   ...+.+++..........+.+.           ...+..+.+.+.++...+...+
T Consensus         3 ~m~k~iiFDlDGTL~d~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   79 (211)
T 2i6x_A            3 AMIRNIVFDLGGVLIHLNREES---IRRFKAIGVADIEEMLDPYLQKGLFLDLESGRKSEEEFRTELSRYIGKELTYQQV   79 (211)
T ss_dssp             CCCSEEEECSBTTTEEECHHHH---HHHHHHTTCTTHHHHTCC---CCHHHHHHHSSSCHHHHHHHHHHHHTSCCCHHHH
T ss_pred             ccceEEEEeCCCeeEecchHHH---HHHHHHhCCchHHHHHHHHhCchHHHHHHcCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            3579999999999999876543   4455666655433333333222           2233333444444433222221


Q ss_pred             HHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh------cCCccccceEEeccccCCCCC
Q 024956           76 VNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ------HGWNESFSVIVGSDEVRTGKP  149 (260)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~------~gl~~~f~~i~~~~~~~~~kp  149 (260)
                      .    ..+..  ....++|++.++|+.|++ |++++++||+....+...+ +.      +++..+|+.+++++..+..||
T Consensus        80 ~----~~~~~--~~~~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~-~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp  151 (211)
T 2i6x_A           80 Y----DALLG--FLEEISAEKFDYIDSLRP-DYRLFLLSNTNPYVLDLAM-SPRFLPSGRTLDSFFDKVYASCQMGKYKP  151 (211)
T ss_dssp             H----HHHGG--GEEEECHHHHHHHHHHTT-TSEEEEEECCCHHHHHHHT-STTSSTTCCCGGGGSSEEEEHHHHTCCTT
T ss_pred             H----HHHHH--hhcccChHHHHHHHHHHc-CCeEEEEeCCCHHHHHHHH-hhhccccccCHHHHcCeEEeecccCCCCC
Confidence            1    11111  124678999999999999 9999999999998888777 66      799999999999999999999


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +++.++.+++++|++|+++++|||+.+|+.+|+.+|+.+++++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~~  196 (211)
T 2i6x_A          152 NEDIFLEMIADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNG  196 (211)
T ss_dssp             SHHHHHHHHHHHCCCGGGEEEECSCHHHHHHHHHTTCEEECCCTT
T ss_pred             CHHHHHHHHHHhCCChHHeEEeCCCHHHHHHHHHcCCEEEEECCH
Confidence            999999999999999999999999999999999999999999884

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.94  E-value=4.6e-28  Score=189.05  Aligned_cols=201  Identities=16%  Similarity=0.197  Sum_probs=140.4

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh----ccCCCH--HH------HHHHHHHHhCCCCCHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK----IVGKTP--LE------EAAIIVEDYGLPCAKHEF   75 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~--~~------~~~~~~~~~~~~~~~~~~   75 (260)
                      ++|+|+||+||||+|+...+..++.+++.++|.+.+...+..    ..|...  ..      .++.+++.++.... ++.
T Consensus         2 ~~k~viFDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~   80 (220)
T 2zg6_A            2 KYKAVLVDFGNTLVGFKPVFYEKVYQVLKDNGYDLDLRKVFRAYAKAMGMINYPDEDGLEHVDPKDFLYILGIYPS-ERL   80 (220)
T ss_dssp             CCCEEEECSBTTTEEEEETTHHHHHHHHHHTTCCCCHHHHHHHHHHHGGGCCC-----CCCCCHHHHHHHHTCCCC-HHH
T ss_pred             CceEEEEcCCCceecccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhccCCCccccccccHHHHHHHcCCCCc-HHH
Confidence            578999999999999987777788888888887765443321    122111  00      13556666665432 233


Q ss_pred             HHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHH
Q 024956           76 VNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFL  155 (260)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~  155 (260)
                      .+.+.+.+. ......++|++.++|++|+++|++++++||+... +...+ +.+|+..+|+.++++++.+..||+|+.+.
T Consensus        81 ~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~~-~~~~l-~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~  157 (220)
T 2zg6_A           81 VKELKEADI-RDGEAFLYDDTLEFLEGLKSNGYKLALVSNASPR-VKTLL-EKFDLKKYFDALALSYEIKAVKPNPKIFG  157 (220)
T ss_dssp             HHHHHHTTT-TCEEEEECTTHHHHHHHHHTTTCEEEECCSCHHH-HHHHH-HHHTCGGGCSEEC-----------CCHHH
T ss_pred             HHHHHHHhh-cccCceECcCHHHHHHHHHHCCCEEEEEeCCcHH-HHHHH-HhcCcHhHeeEEEeccccCCCCCCHHHHH
Confidence            333322111 1224678999999999999999999999999764 67777 88999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcEEEEecCHh-hHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          156 EAAKRLNMEPSSSLVIEDSVI-GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       156 ~~l~~l~~~~~~~~~vGD~~~-Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      .+++++|++|   +||||+++ |+.+|+.+|+.++++.++.....   . +++++++.|+...+.
T Consensus       158 ~~~~~~~~~~---~~vgD~~~~Di~~a~~aG~~~i~v~~~~~~~~---~-~~~i~~l~el~~~l~  215 (220)
T 2zg6_A          158 FALAKVGYPA---VHVGDIYELDYIGAKRSYVDPILLDRYDFYPD---V-RDRVKNLREALQKIE  215 (220)
T ss_dssp             HHHHHHCSSE---EEEESSCCCCCCCSSSCSEEEEEBCTTSCCTT---C-CSCBSSHHHHHHHHH
T ss_pred             HHHHHcCCCe---EEEcCCchHhHHHHHHCCCeEEEECCCCCCCC---c-ceEECCHHHHHHHHH
Confidence            9999999988   99999998 99999999999999987422211   1 567888888876653

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.94  E-value=2.8e-27  Score=186.00  Aligned_cols=206  Identities=15%  Similarity=0.132  Sum_probs=143.2

Q ss_pred             CCccc-cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCCh------hhhhhccCCC-HHHHHHHHHHHhCCCCCH
Q 024956            1 MAQPL-KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDG------REKHKIVGKT-PLEEAAIIVEDYGLPCAK   72 (260)
Q Consensus         1 M~~~~-~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~g~~-~~~~~~~~~~~~~~~~~~   72 (260)
                      |..+| +.++|+|+||+||||+|+...+..++.++++++|.....      ..+....|.. ....+..+.......   
T Consensus         2 m~~~m~~~~~k~viFDlDGTL~ds~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---   78 (231)
T 2p11_A            2 MQATTATPHDIVFLFDCDNTLLDNDHVLADLRAHMMREFGAQNSARYWEIFETLRTELGYADYLGALQRYRLEQPRD---   78 (231)
T ss_dssp             -------CCSEEEEECCBTTTBCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHCTTC---
T ss_pred             CccccCCCCCeEEEEcCCCCCEecHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCchHHHHHHHHHHhccccc---
Confidence            45443 356889999999999999998888999999888754332      1222233433 122222222222111   


Q ss_pred             HHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChH
Q 024956           73 HEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPD  152 (260)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~  152 (260)
                       ...+.+.+.+........++||+.++|+.|+++| +++++||+....+...+ +.+|+..+|+.++..   +  ++++.
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~~~~~l-~~~gl~~~f~~~~~~---~--~~K~~  150 (231)
T 2p11_A           79 -TRLLLMSSFLIDYPFASRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKI-ARSGLWDEVEGRVLI---Y--IHKEL  150 (231)
T ss_dssp             -TGGGGGHHHHHHCCGGGGBCTTHHHHHHHHHTTS-CEEEEEECCSSHHHHHH-HHTTHHHHTTTCEEE---E--SSGGG
T ss_pred             -hHHHHHHHHHHHHHHhCCcCccHHHHHHHHHhCC-CEEEEeCCCHHHHHHHH-HHcCcHHhcCeeEEe---c--CChHH
Confidence             1112223333333445789999999999999999 99999999999999888 888998888875542   2  33456


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHh---hHHHHHHcCCeEEEEcCCCC--cc-ccc-c-ccchhcccccccccccc
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVI---GVVAGKAAGMEVVAVPSLPK--QT-HRY-T-AADEVINSLLDLRPEKW  219 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~---Dv~~a~~~G~~~i~~~~~~~--~~-~~~-~-~~~~~v~~~~~l~~~~~  219 (260)
                      .++.+++  +++|++++||||+.+   |+.+|+++|+.++++.++..  .. ... . .++++++++.++...+.
T Consensus       151 ~~~~~~~--~~~~~~~~~vgDs~~d~~di~~A~~aG~~~i~v~~g~~~~~~~~l~~~~~~~~~i~~~~el~~~l~  223 (231)
T 2p11_A          151 MLDQVME--CYPARHYVMVDDKLRILAAMKKAWGARLTTVFPRQGHYAFDPKEISSHPPADVTVERIGDLVEMDA  223 (231)
T ss_dssp             CHHHHHH--HSCCSEEEEECSCHHHHHHHHHHHGGGEEEEEECCSSSSSCHHHHHHSCCCSEEESSGGGGGGCGG
T ss_pred             HHHHHHh--cCCCceEEEEcCccchhhhhHHHHHcCCeEEEeCCCCCCCcchhccccCCCceeecCHHHHHHHHH
Confidence            7777776  789999999999999   99999999999999988632  21 222 2 38999999999987764

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.94  E-value=1.9e-26  Score=176.96  Aligned_cols=177  Identities=19%  Similarity=0.240  Sum_probs=131.0

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhc------cC-CCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKI------VG-KTPLEEAAIIVEDYGLPCAKHEFVNEV   79 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (260)
                      ++|+|+||+||||+|+.. ....+..++++++........ ...      .+ ......+..+....+.....+    .+
T Consensus         3 ~~k~viFDlDGTL~d~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~   77 (200)
T 3cnh_A            3 TIKALFWDIGGVLLTNGW-DREQRADVAQRFGLDTDDFTERHRLAAPELELGRMTLAEYLEQVVFYQPRDFTPE----DF   77 (200)
T ss_dssp             CCCEEEECCBTTTBCCSS-CHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTTTSCCSSCHH----HH
T ss_pred             CceEEEEeCCCeeECCCc-chHHHHHHHHHcCCCHHHHHHHHHhhchHHHcCCcCHHHHHHHHHHHcCCCCCHH----HH
Confidence            579999999999999753 245666777777754322111 100      11 111222222221111111111    11


Q ss_pred             HHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           80 YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      .+.+   .....++|++.++|+.|+++| +++++||+....+...+ +.+|+..+|+.+++++..+..||+++.+..+++
T Consensus        78 ~~~~---~~~~~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l-~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~  152 (200)
T 3cnh_A           78 RAVM---EEQSQPRPEVLALARDLGQRY-RMYSLNNEGRDLNEYRI-RTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLT  152 (200)
T ss_dssp             HHHH---HHTCCBCHHHHHHHHHHTTTS-EEEEEECCCHHHHHHHH-HHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHH
T ss_pred             HHHH---HhcCccCccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHH-HhCCHHHhcceEEeecccCCCCCCHHHHHHHHH
Confidence            2211   234568999999999999999 99999999999888888 888999999999999999999999999999999


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      ++|++|+++++|||+.+|+.+|+.+|+.+++++++
T Consensus       153 ~~~~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~  187 (200)
T 3cnh_A          153 LAQVRPEEAVMVDDRLQNVQAARAVGMHAVQCVDA  187 (200)
T ss_dssp             HHTCCGGGEEEEESCHHHHHHHHHTTCEEEECSCH
T ss_pred             HcCCCHHHeEEeCCCHHHHHHHHHCCCEEEEECCc
Confidence            99999999999999999999999999999999873

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.94  E-value=2.1e-26  Score=180.58  Aligned_cols=178  Identities=21%  Similarity=0.205  Sum_probs=136.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhc----------cC-CCHHHHHHHHHHHhCCCCCHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKI----------VG-KTPLEEAAIIVEDYGLPCAKHEF   75 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g-~~~~~~~~~~~~~~~~~~~~~~~   75 (260)
                      +++|+|+||+||||+++..   ..+.+.++++|..........+          .| ....+..+.+.+.++.....+++
T Consensus        26 ~~ik~viFD~DGTL~d~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  102 (229)
T 4dcc_A           26 KGIKNLLIDLGGVLINLDR---ERCIENFKKIGFQNIEEKFCTHQLDGIFLQQEKGLITPAEFRDGIREMMGKMVSDKQI  102 (229)
T ss_dssp             CCCCEEEECSBTTTBCBCH---HHHHHHHHHHTCTTHHHHHHHTHHHHHHHHHHTTCSCHHHHHHHHHHHHTSCCCHHHH
T ss_pred             CCCCEEEEeCCCeEEeCCh---HHHHHHHHHhCCCcHHHHHHHhcCcHHHHHHHCCCCCHHHHHHHHHHHhCCCCCHHHH
Confidence            3589999999999999763   3344566677765433333221          12 24455566666666665554443


Q ss_pred             HHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHH-----hhcCCccccceEEeccccCCCCCC
Q 024956           76 VNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKIS-----YQHGWNESFSVIVGSDEVRTGKPS  150 (260)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~-----~~~gl~~~f~~i~~~~~~~~~kp~  150 (260)
                      .+.+    ....  ..++|++.++|+.|++. ++++++||+........+.     +.+++..+|+.++++++.+..||+
T Consensus       103 ~~~~----~~~~--~~~~~~~~~~l~~l~~~-~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~  175 (229)
T 4dcc_A          103 DAAW----NSFL--VDIPTYKLDLLLKLREK-YVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPE  175 (229)
T ss_dssp             HHHH----HTTB--CCCCHHHHHHHHHHTTT-SEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTC
T ss_pred             HHHH----HHHH--HhccHHHHHHHHHHHhc-CcEEEEECCChHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCC
Confidence            3322    2222  24679999999999999 9999999999988764442     346788899999999999999999


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      |++|+.+++++|++|+++++|||+++|+.+|+.+|+.+++++++
T Consensus       176 ~~~~~~~~~~~g~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~~  219 (229)
T 4dcc_A          176 PEIFKAVTEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAG  219 (229)
T ss_dssp             HHHHHHHHHHHTCCGGGEEEECSCHHHHHHHHHTTCEEECCCTT
T ss_pred             HHHHHHHHHHcCCCHHHeEEECCCHHHHHHHHHcCCEEEEECCH
Confidence            99999999999999999999999999999999999999999884

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.94  E-value=4.6e-27  Score=182.59  Aligned_cols=193  Identities=15%  Similarity=0.152  Sum_probs=132.5

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh--hhccCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIVGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      |+++|+|+||+||||+++....     .+.+.++........  +...+. ...+.+........ ....        +.
T Consensus         1 M~~~k~vifDlDGTL~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~   66 (217)
T 3m1y_A            1 MSLQKLAVFDFDSTLVNAETIE-----SLARAWGVFDEVKTITLKAMNGETDFHKSLILRVSKLK-NMPL--------KL   66 (217)
T ss_dssp             -CCCEEEEEECBTTTBSSCHHH-----HHHHHTTCHHHHTTCCCC----CCCHHHHHHHHHHTTT-TCBH--------HH
T ss_pred             CCCCcEEEEeCCCCCCCchhHH-----HHHHHcCchHHHHHHHHHHHcCcCCHHHHHHHHHHHhc-CCCH--------HH
Confidence            3568999999999999975422     233333321111100  001111 11222222222111 1111        11


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----------cccCCCCCChH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----------DEVRTGKPSPD  152 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----------~~~~~~kp~~~  152 (260)
                      +...+....++|++.++|+.|+++|++++++||+....++..+ +.+|+..+|+.++..          ......||++.
T Consensus        67 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k~~  145 (217)
T 3m1y_A           67 AKEVCESLPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYR-DLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSKGE  145 (217)
T ss_dssp             HHHHHTTCCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHH-HHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHHHH
T ss_pred             HHHHHhcCcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHH-HHcCcchhccceeEEeCCEEEeeeccCCCCCCChHH
Confidence            2223345789999999999999999999999999999998888 888999999888633          34567899999


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--cccccccc
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRPE  217 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~~  217 (260)
                      .++.+++++|++|+++++|||+.+|+.+|+.+|+.+++ +.   ....+..|+++++  ++.++.++
T Consensus       146 ~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~-~~---~~~l~~~ad~v~~~~dl~~~~~~  208 (217)
T 3m1y_A          146 MLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF-NA---KEVLKQHATHCINEPDLALIKPL  208 (217)
T ss_dssp             HHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEE-SC---CHHHHTTCSEEECSSBGGGGTTC
T ss_pred             HHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEE-Cc---cHHHHHhcceeecccCHHHHHHH
Confidence            99999999999999999999999999999999998877 43   4555677888886  44444443

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.94  E-value=8.1e-27  Score=179.76  Aligned_cols=179  Identities=15%  Similarity=0.156  Sum_probs=128.8

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccC-----------CCHHHHHHHHHHHhCCCCCHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVG-----------KTPLEEAAIIVEDYGLPCAKHE   74 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~~~~   74 (260)
                      ++++|+|+||+||||+|+..   ..+...+.+.+............+           ....+..+.+.+.++...+..+
T Consensus         4 ~~~~k~viFDlDGTL~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (206)
T 2b0c_A            4 KEAKMLYIFDLGNVIVDIDF---NRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEALCHEMALPLSYEQ   80 (206)
T ss_dssp             --CCCEEEECCBTTTEEEET---HHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHHTCCCCHHH
T ss_pred             cccccEEEEcCCCeeecCcH---HHHHHHHHHhcCCCHHHHHHHHhcccHHHHHhcCCCCHHHHHHHHHHHhCCCCCHHH
Confidence            34689999999999999862   112223333343322222222222           2233344445555544333322


Q ss_pred             HHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh-cCCccccceEEeccccCCCCCChHH
Q 024956           75 FVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDI  153 (260)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~-~gl~~~f~~i~~~~~~~~~kp~~~~  153 (260)
                      +.    +.+..  ....++|++.++|++|++.|++++++||+....+...+ .. +|+..+|+.+++++..+..||+++.
T Consensus        81 ~~----~~~~~--~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~-~~~~~l~~~f~~~~~~~~~~~~Kp~~~~  153 (206)
T 2b0c_A           81 FS----HGWQA--VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWP-EEYPEIRDAADHIYLSQDLGMRKPEARI  153 (206)
T ss_dssp             HH----HHHHT--CEEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCG-GGCHHHHHHCSEEEEHHHHTCCTTCHHH
T ss_pred             HH----HHHHH--HhcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHH-HhccChhhheeeEEEecccCCCCCCHHH
Confidence            21    11111  12578899999999999999999999999887766555 44 6788889999999999999999999


Q ss_pred             HHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       154 ~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +..+++++|++|+++++|||+.+|+.+|+.+|+.+++++++
T Consensus       154 ~~~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~  194 (206)
T 2b0c_A          154 YQHVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDK  194 (206)
T ss_dssp             HHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEECCST
T ss_pred             HHHHHHHcCCCHHHeEEeCCCHHHHHHHHHcCCeEEEecCC
Confidence            99999999999999999999999999999999999999873

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.93  E-value=1.2e-25  Score=171.98  Aligned_cols=126  Identities=20%  Similarity=0.209  Sum_probs=106.2

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC-C
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP-S  166 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~-~  166 (260)
                      ....++||+.++|+.|+++|++++++|+.........+    +  .+|+.++++++....||+|+.+..+++++++.+ +
T Consensus        33 ~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~----~--~~~d~v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~  106 (196)
T 2oda_A           33 EHAQLTPGAQNALKALRDQGMPCAWIDELPEALSTPLA----A--PVNDWMIAAPRPTAGWPQPDACWMALMALNVSQLE  106 (196)
T ss_dssp             GGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHH----T--TTTTTCEECCCCSSCTTSTHHHHHHHHHTTCSCST
T ss_pred             ccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhc----C--ccCCEEEECCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence            34678999999999999999999999999887664332    2  468999999999999999999999999999975 8


Q ss_pred             cEEEEecCHhhHHHHHHcCCeEEEEcCCCCcc------------------------c-cccccchhcccccccccccc
Q 024956          167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQT------------------------H-RYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~------------------------~-~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +++||||+.+|+.+|+++|+.+|++.++....                        . ....++++++++.||...+.
T Consensus       107 ~~v~VGDs~~Di~aA~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~d~vi~~~~eL~~~l~  184 (196)
T 2oda_A          107 GCVLISGDPRLLQSGLNAGLWTIGLASCGPLCGLSPSQWQALNNAEREQRRAQATLKLYSLGVHSVIDHLGELESCLA  184 (196)
T ss_dssp             TCEEEESCHHHHHHHHHHTCEEEEESSSSTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCSEEESSGGGHHHHHH
T ss_pred             cEEEEeCCHHHHHHHHHCCCEEEEEccCCccccccHHHhhhcchhhhhhhHHHHHHHHHHcCCCEEeCCHHHHHHHHH
Confidence            99999999999999999999999999865320                        0 12458899999999877653

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.93  E-value=4.3e-26  Score=173.77  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=115.3

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEecccc----CCCCCChHHHHHHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEV----RTGKPSPDIFLEAAKR  160 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~----~~~kp~~~~~~~~l~~  160 (260)
                      ....++||+.++|++|+++|++++++||+..   ..+...+ +.+|+..+|+.++++++.    +..||+|+.|+.++++
T Consensus        31 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~  109 (189)
T 3ib6_A           31 PEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVL-TNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNA  109 (189)
T ss_dssp             TTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHH-HHTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHH
T ss_pred             CCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHH-HhcCchhheEEEEEccccccccCCCCcCHHHHHHHHHH
Confidence            3578999999999999999999999999987   7788888 889999999999999876    7899999999999999


Q ss_pred             cCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCc---ccc-ccccchhcc--cccccccccc
Q 024956          161 LNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQ---THR-YTAADEVIN--SLLDLRPEKW  219 (260)
Q Consensus       161 l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~---~~~-~~~~~~~v~--~~~~l~~~~~  219 (260)
                      ++++|++++||||+ .+|+.+|+.+|+.++++.++...   ... ...++++++  ++.+|.+++.
T Consensus       110 ~~~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~~~~v~~~~~l~~l~~~l~  175 (189)
T 3ib6_A          110 LQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFVIPVWDLADVPEALL  175 (189)
T ss_dssp             HTCCGGGEEEEESBTTTTHHHHHHTTCEEEEECCTTTCBCSSCCCBCSSSCEEEESSGGGHHHHHH
T ss_pred             cCCCcccEEEECCCcHHHHHHHHHCCCeEEEECCccccccccccccCCCcceeccccHHhHHHHHH
Confidence            99999999999999 69999999999999999885432   122 237899999  9999887764

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.92  E-value=8.4e-26  Score=170.62  Aligned_cols=128  Identities=20%  Similarity=0.257  Sum_probs=108.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEE-----eccccCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIV-----GSDEVRTGK  148 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~-----~~~~~~~~k  148 (260)
                      ..+++|++.++|++|+++|++++++||+..               ..+...+ +.+|  .+|+.++     +++..+..|
T Consensus        25 ~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g--~~~~~~~~~~~~~~~~~~~~K  101 (179)
T 3l8h_A           25 EWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRAL-AQMG--GVVDAIFMCPHGPDDGCACRK  101 (179)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHH-HHTT--CCCCEEEEECCCTTSCCSSST
T ss_pred             HceECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHH-HhCC--CceeEEEEcCCCCCCCCCCCC
Confidence            467899999999999999999999999986               4556666 6666  3456555     257778899


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccc----cccchhcccccccccccc
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRY----TAADEVINSLLDLRPEKW  219 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~----~~~~~~v~~~~~l~~~~~  219 (260)
                      |+++.++.+++++|++|++++||||+.+|+.+|+.+|+.++++.++.......    ..++++++++.||.+.+.
T Consensus       102 P~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~d~v~~~l~el~~~l~  176 (179)
T 3l8h_A          102 PLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPEGTRVCEDLAAVAEQLL  176 (179)
T ss_dssp             TSSHHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHTCEEEEESTTTHHHHHHHCCCCTTEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCcEEEECCCCcchhhhhcccCCCcEEecCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999976544432    568999999999987764

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.92  E-value=1.1e-24  Score=170.33  Aligned_cols=196  Identities=14%  Similarity=0.147  Sum_probs=131.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCC--CHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGK--TPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      ++++|+|+||+||||+|+..     +..+++.+|.... .+......+.  ...+.+........  ...    +.+.+.
T Consensus        11 ~~~~k~viFD~DGTLvd~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~   79 (225)
T 1nnl_A           11 FYSADAVCFDVDSTVIREEG-----IDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQ--PSR----EQVQRL   79 (225)
T ss_dssp             HHHCSEEEEETBTTTBSSCH-----HHHHHHHTTCTTTC------------CHHHHHHHHHHHHC--CCH----HHHHHH
T ss_pred             HhhCCEEEEeCccccccccc-----HHHHHHHhCCcHHHHHHHHHHHcCCccHHHHHHHHHHHhc--CCH----HHHHHH
Confidence            45689999999999999853     3456677776542 2222233332  22222222222221  111    112222


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc--ccceEE--------eccccCC----CC
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE--SFSVIV--------GSDEVRT----GK  148 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~--~f~~i~--------~~~~~~~----~k  148 (260)
                      +..  ...+++||+.++|+.|+++|++++++||+....++..+ +.+|+..  +|+.++        .+.+...    .+
T Consensus        80 ~~~--~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  156 (225)
T 1nnl_A           80 IAE--QPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVA-SKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESG  156 (225)
T ss_dssp             HHH--SCCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTT
T ss_pred             HHh--ccCCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHH-HHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCC
Confidence            221  24678999999999999999999999999999998888 8889873  776653        3333221    35


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      |||+.+..+++++|+  ++++||||+.+|+.+|+.+|+ ++.+............++++++++.++...+
T Consensus       157 ~Kp~~~~~~~~~~~~--~~~~~vGDs~~Di~~a~~ag~-~i~~~~~~~~~~~~~~~~~~~~~~~el~~~l  223 (225)
T 1nnl_A          157 GKGKVIKLLKEKFHF--KKIIMIGDGATDMEACPPADA-FIGFGGNVIRQQVKDNAKWYITDFVELLGEL  223 (225)
T ss_dssp             HHHHHHHHHHHHHCC--SCEEEEESSHHHHTTTTTSSE-EEEECSSCCCHHHHHHCSEEESCGGGGCC--
T ss_pred             chHHHHHHHHHHcCC--CcEEEEeCcHHhHHHHHhCCe-EEEecCccccHHHHhcCCeeecCHHHHHHHH
Confidence            788999999999998  789999999999999999999 7877653222223456899999999987654

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.92  E-value=2.2e-26  Score=182.04  Aligned_cols=204  Identities=19%  Similarity=0.213  Sum_probs=142.2

Q ss_pred             cccEEEEecCCccccCHHHHHHH--HHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEV--LKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSM   82 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   82 (260)
                      ++|+|+||+||||+++...+...  +.+.+++.|..+.  ......|++.....+.+.. .++......+   ......+
T Consensus         2 ~~k~i~fDlDGTLl~~~~~~~~~~~~~~~l~~~g~~~~--~~t~~~g~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~   78 (250)
T 2c4n_A            2 TIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLV--LLTNYPSQTGQDLANRFAT-AGVDVPDSVFYTSAMATADF   78 (250)
T ss_dssp             CCCEEEEECBTTTEETTEECTTHHHHHHHHHHTTCCEE--EEESCCSCCHHHHHHHHHH-TTCCCCGGGEEEHHHHHHHH
T ss_pred             CccEEEEcCcceEEeCCEeCcCHHHHHHHHHHcCCcEE--EEECCCCCCHHHHHHHHHH-cCCCCCHHHeEcHHHHHHHH
Confidence            47999999999999986544444  4445556676543  2223346666655555544 5554322221   1112222


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEE---------------------------------EEeCCChHhHHHHHHhhc
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMA---------------------------------LASNSHRATIESKISYQH  129 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~---------------------------------i~s~~~~~~~~~~l~~~~  129 (260)
                      .........+.+++.++++.+++.|++++                                 ++|+.. ......+ ..+
T Consensus        79 ~~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~-~~~~~~~-~~~  156 (250)
T 2c4n_A           79 LRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPD-THGRGFY-PAC  156 (250)
T ss_dssp             HHTSSCCEEEEECCTHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHTTCEEEESCCC-SBSSTTC-BCH
T ss_pred             HHhcCCCEEEEEcCHHHHHHHHHcCCcccCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCCCCee-ecc
Confidence            22223345678999999999999999998                                 888766 3333233 333


Q ss_pred             C-CccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCccc-cc---cc
Q 024956          130 G-WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTH-RY---TA  203 (260)
Q Consensus       130 g-l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~~~-~~---~~  203 (260)
                      + +..+|+.+.+.+....+||++..++.+++++|++|+++++|||+ .||++|++.+|+.++++.++....+ .+   ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~~~~aG~~~~~v~~g~~~~~~~~~~~~~  236 (250)
T 2c4n_A          157 GALCAGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFR  236 (250)
T ss_dssp             HHHHHHHHHHHCCCCEECSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSCSSC
T ss_pred             hHHHHHHHHHhCCCceEeCCCCHHHHHHHHHHcCCCcceEEEECCCchhHHHHHHHcCCeEEEECCCCCChhhhhhcCCC
Confidence            3 44556666667777889999999999999999999999999999 6999999999999999998655432 22   57


Q ss_pred             cchhccccccccc
Q 024956          204 ADEVINSLLDLRP  216 (260)
Q Consensus       204 ~~~~v~~~~~l~~  216 (260)
                      |+++++++.|+.+
T Consensus       237 ~~~v~~~~~el~~  249 (250)
T 2c4n_A          237 PSWIYPSVAEIDV  249 (250)
T ss_dssp             CSEEESSGGGCCC
T ss_pred             CCEEECCHHHhhc
Confidence            8999999998754

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.92  E-value=4.2e-25  Score=171.17  Aligned_cols=128  Identities=22%  Similarity=0.257  Sum_probs=108.7

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCC---------------hHhHHHHHHhhcCCccccceEEec------------
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSH---------------RATIESKISYQHGWNESFSVIVGS------------  141 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~---------------~~~~~~~l~~~~gl~~~f~~i~~~------------  141 (260)
                      ..+++|++.++|++|+++|++++++||+.               ...+...+ +.+|+.  |+.++.+            
T Consensus        48 ~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--f~~~~~~~~~~~~~~~~~~  124 (211)
T 2gmw_A           48 NFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSL-ADRDVD--LDGIYYCPHHPQGSVEEFR  124 (211)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHH-HHTTCC--CSEEEEECCBTTCSSGGGB
T ss_pred             cCcCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHH-HHcCCc--eEEEEECCcCCCCcccccC
Confidence            46789999999999999999999999999               36677777 778886  7766532            


Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc-ccccchhcccccccccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      +..+..||++..++.++++++++|++++||||+.+|+.+|+.+|+.+ +++.++...... ...++++++++.|+.+.+.
T Consensus       125 ~~~~~~KP~p~~~~~~~~~lgi~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~d~vi~~l~el~~~l~  204 (211)
T 2gmw_A          125 QVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIK  204 (211)
T ss_dssp             SCCSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGHHHHHH
T ss_pred             ccCcCCCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCceEEEEecCCCccccccCCCCEEeCCHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999 999886543332 3568999999999987764

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.90  E-value=1.5e-24  Score=177.68  Aligned_cols=195  Identities=12%  Similarity=0.075  Sum_probs=131.7

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh--hhccCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK--HKIVGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      ++++|+|+||+||||+++...     ..+.+.++........  ....+. ...+.+........ . ...+.       
T Consensus       105 ~~~~kaviFDlDGTLid~~~~-----~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~-~-~~~~~-------  170 (317)
T 4eze_A          105 LPANGIIAFDMDSTFIAEEGV-----DEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLK-G-TPKAV-------  170 (317)
T ss_dssp             CCCSCEEEECTBTTTBSSCHH-----HHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTT-T-CBHHH-------
T ss_pred             CCCCCEEEEcCCCCccCCccH-----HHHHHHhCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHhc-C-CCHHH-------
Confidence            457899999999999998643     3333444432111111  011111 11222222222111 0 11111       


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----------cccCCCCCChH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----------DEVRTGKPSPD  152 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----------~~~~~~kp~~~  152 (260)
                      +........++||+.++|+.|+++|++++++||+....++..+ +.+|+..+|+.++..          ......||+++
T Consensus       171 i~~~~~~~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l-~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~  249 (317)
T 4eze_A          171 LNAVCDRMTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLK-ARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANKKQ  249 (317)
T ss_dssp             HHHHHHTCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCSEEEEECEEEETTEEEEEECSSCCCHHHHHH
T ss_pred             HHHHHhCCEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHH-HHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCCHH
Confidence            1222235679999999999999999999999999999999888 889999888876542          23446689999


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch--hcccccccccccc
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLDLRPEKW  219 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~v~~~~~l~~~~~  219 (260)
                      .+..++++++++|++++||||+.+|+.+|+.+|+.+++ +.   .......++.  ..+++.++...+.
T Consensus       250 ~~~~~~~~lgv~~~~~i~VGDs~~Di~aa~~AG~~va~-~~---~~~~~~~a~~~i~~~~L~~ll~~L~  314 (317)
T 4eze_A          250 TLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAW-KA---KPVVREKIHHQINYHGFELLLFLIE  314 (317)
T ss_dssp             HHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE-SC---CHHHHHHCCEEESSSCGGGGGGGTC
T ss_pred             HHHHHHHHcCCCcceEEEEeCCHHHHHHHHHCCCeEEe-CC---CHHHHHhcCeeeCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999997776 43   3333333443  4457777766654

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.90  E-value=5.4e-25  Score=173.48  Aligned_cols=204  Identities=15%  Similarity=0.152  Sum_probs=137.2

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhc-cC-CCHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKI-VG-KTPLEEAAIIVEDYGLPCAKHEFVNEVYSMF   83 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (260)
                      +++|+|+||+||||++++...     .+++.++. ...... ... .+ .+..+.++.++..+..     ...+.+.+++
T Consensus         4 ~~~k~viFD~DGTL~d~ds~~-----~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~~~~~~   72 (236)
T 2fea_A            4 TRKPFIICDFDGTITMNDNII-----NIMKTFAP-PEWMALKDGVLSKTLSIKEGVGRMFGLLPS-----SLKEEITSFV   72 (236)
T ss_dssp             CCCEEEEECCTTTTBSSCHHH-----HHHHHHSC-THHHHHHHHHHTTSSCHHHHHHHHHTTSBG-----GGHHHHHHHH
T ss_pred             CCCcEEEEeCCCCCCccchHH-----HHHHHhch-hhHHHHHHHHHhCcCcHHHHHHHHHHhcCC-----ChHHHHHHHH
Confidence            357899999999999663221     11222221 111111 111 12 2344444444443211     1112222221


Q ss_pred             HhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCC--------CCCChH-HH
Q 024956           84 SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRT--------GKPSPD-IF  154 (260)
Q Consensus        84 ~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~--------~kp~~~-~~  154 (260)
                         .....++||+.++|+.|+++|++++++||+....++..+ +  ++..+ +.+++++....        .||+|. .+
T Consensus        73 ---~~~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l-~--~l~~~-~~v~~~~~~~~~~~~~~~~~kp~p~~~~  145 (236)
T 2fea_A           73 ---LEDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLL-E--GIVEK-DRIYCNHASFDNDYIHIDWPHSCKGTCS  145 (236)
T ss_dssp             ---HHHCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-T--TTSCG-GGEEEEEEECSSSBCEEECTTCCCTTCC
T ss_pred             ---hcCCCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH-h--cCCCC-CeEEeeeeEEcCCceEEecCCCCccccc
Confidence               235789999999999999999999999999998888787 5  77665 88888776543        788887 35


Q ss_pred             H-------HHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-cc-ccchhccccccccccccCCCCCc
Q 024956          155 L-------EAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YT-AADEVINSLLDLRPEKWGLPPFQ  225 (260)
Q Consensus       155 ~-------~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~-~~~~~v~~~~~l~~~~~~l~~~~  225 (260)
                      .       .++++++++|++++||||+.+|+.+|+.+|+.++.  .+. .... .. .++++++++.++...+..+....
T Consensus       146 ~~~~~~K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~--~~~-~~~~~~~~~~~~~~~~~~el~~~l~~~~~~~  222 (236)
T 2fea_A          146 NQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFAR--DYL-LNECREQNLNHLPYQDFYEIRKEIENVKEVQ  222 (236)
T ss_dssp             SCCSSCHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEEC--HHH-HHHHHHTTCCEECCSSHHHHHHHHHTSHHHH
T ss_pred             cccCCcHHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeec--hHH-HHHHHHCCCCeeecCCHHHHHHHHHHhHHHH
Confidence            4       88999999999999999999999999999998763  211 1111 22 27899999999998887766666


Q ss_pred             ccccCC
Q 024956          226 DWIEGT  231 (260)
Q Consensus       226 ~~~~~~  231 (260)
                      +|..+.
T Consensus       223 ~~~~~~  228 (236)
T 2fea_A          223 EWLQNK  228 (236)
T ss_dssp             HHHTCC
T ss_pred             HhhhCc
Confidence            776543

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.90  E-value=5.1e-25  Score=175.71  Aligned_cols=208  Identities=16%  Similarity=0.164  Sum_probs=138.9

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHH--HHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHH---HH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLK--TFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVN---EV   79 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~   79 (260)
                      +++++|+|+||+||||+++...+...+.  +.+++.|..+  .......+.......+.+ +.++++....++..   ..
T Consensus         3 ~~~~ik~i~fDlDGTLld~~~~~~~~~~ai~~l~~~G~~~--~~~t~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~   79 (259)
T 2ho4_A            3 ARRALKAVLVDLNGTLHIEDAAVPGAQEALKRLRATSVMV--RFVTNTTKETKKDLLERL-KKLEFEISEDEIFTSLTAA   79 (259)
T ss_dssp             ---CCCEEEEESSSSSCC---CCTTHHHHHHHHHTSSCEE--EEEECCSSCCHHHHHHHH-HHTTCCCCGGGEEEHHHHH
T ss_pred             chhhCCEEEEeCcCcEEeCCEeCcCHHHHHHHHHHCCCeE--EEEeCCCCcCHHHHHHHH-HHcCCCccHHHeecHHHHH
Confidence            3557999999999999998665433332  3345556443  112222344444444433 45666543222110   01


Q ss_pred             HHHHHhh---------------h----------------ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhh
Q 024956           80 YSMFSDH---------------L----------------CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ  128 (260)
Q Consensus        80 ~~~~~~~---------------~----------------~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~  128 (260)
                      ...+...               +                ....+++++.++++.++ .|+++ ++|+.........+ ..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~-i~t~~~~~~~~~~~-~~  156 (259)
T 2ho4_A           80 RNLIEQKQVRPMLLLDDRALPEFTGVQTQDPNAVVIGLAPEHFHYQLLNQAFRLLL-DGAPL-IAIHKARYYKRKDG-LA  156 (259)
T ss_dssp             HHHHHHHTCCEEEESCGGGGGGGTTCCCSSCCEEEECCCGGGCBHHHHHHHHHHHH-TTCCE-EESCCCSEEEETTE-EE
T ss_pred             HHHHHHcCCeEEEEeCHHHHHHHHHcCCCCCCEEEEecCCCCCCHHHHHHHHHHHH-CCCEE-EEECCCCcCcccCC-cc
Confidence            1111110               0                01126789999999999 88999 89988776555455 66


Q ss_pred             cCCccccc---eEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCC-cccc---
Q 024956          129 HGWNESFS---VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPK-QTHR---  200 (260)
Q Consensus       129 ~gl~~~f~---~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~-~~~~---  200 (260)
                      .++..+|+   .+++++.....||+|..++.+++++|++|+++++|||++ +|+.+|+.+|+.++++.++.. ..+.   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~  236 (259)
T 2ho4_A          157 LGPGPFVTALEYATDTKAMVVGKPEKTFFLEALRDADCAPEEAVMIGDDCRDDVDGAQNIGMLGILVKTGKYKAADEEKI  236 (259)
T ss_dssp             ECSHHHHHHHHHHHTCCCEECSTTSHHHHHHHGGGGTCCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCCTTGGGGS
T ss_pred             cCCcHHHHHHHHHhCCCceEecCCCHHHHHHHHHHcCCChHHEEEECCCcHHHHHHHHHCCCcEEEECCCCCCccccccc
Confidence            77777776   556777788899999999999999999999999999999 999999999999999998632 2221   


Q ss_pred             ccccchhccccccccccc
Q 024956          201 YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       201 ~~~~~~~v~~~~~l~~~~  218 (260)
                      ...++++++++.++...+
T Consensus       237 ~~~~~~~~~~l~~l~~~l  254 (259)
T 2ho4_A          237 NPPPYLTCESFPHAVDHI  254 (259)
T ss_dssp             SSCCSEEESCHHHHHHHH
T ss_pred             CCCCCEEECCHHHHHHHH
Confidence            356889999999987654

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.90  E-value=7e-25  Score=175.62  Aligned_cols=207  Identities=14%  Similarity=0.127  Sum_probs=136.6

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHH--HHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHH-------
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLK--TFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVN-------   77 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-------   77 (260)
                      .++|+|+||+||||+++...+.....  ..+.+.|..+.  ......+.......+.+..+++++...+++..       
T Consensus         3 ~~~k~v~fDlDGTL~~~~~~~~~~~~~l~~l~~~g~~~~--~~t~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~   80 (264)
T 1yv9_A            3 LDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFL--FVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATID   80 (264)
T ss_dssp             CSCCEEEECCBTTTEETTEECHHHHHHHHHHHHTTCCEE--EEECCCSSCHHHHHHHHHHHSCCCCCGGGEEEHHHHHHH
T ss_pred             ccCCEEEEeCCCeEEeCCEECcCHHHHHHHHHHCCCeEE--EEeCCCCCCHHHHHHHHHHhcCCCCChhhEEcHHHHHHH
Confidence            46899999999999997544433322  23445554431  11122233333444444443555432221100       


Q ss_pred             -----------------HHHHHHHhh---------------hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHh--HHH
Q 024956           78 -----------------EVYSMFSDH---------------LCKVKALPGANRLIKHLSCHGVPMALASNSHRAT--IES  123 (260)
Q Consensus        78 -----------------~~~~~~~~~---------------~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~--~~~  123 (260)
                                       .+.+.+...               +....++|++.++++.|+ .|+++ ++||.....  ...
T Consensus        81 ~~~~~~~~~~~~~~g~~~l~~~l~~~g~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~l~-~g~~~-i~tn~~~~~~~~~~  158 (264)
T 1yv9_A           81 YMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTELSYEKVVLATLAIQ-KGALF-IGTNPDKNIPTERG  158 (264)
T ss_dssp             HHHHHCCCSEEEEESCHHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTE
T ss_pred             HHHhhCCCCEEEEEeCHHHHHHHHHcCCcccCCCCCEEEEECCCCcCHHHHHHHHHHHh-CCCEE-EEECCCCcccCCCC
Confidence                             111112111               123457899999999997 88887 889887643  111


Q ss_pred             HHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc-ccc
Q 024956          124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT-HRY  201 (260)
Q Consensus       124 ~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~-~~~  201 (260)
                      .+....++..+|+.+++++..+..||+|..|+.+++++|++|++++||||++ +|+.+|+.+|+.++++.++.... ...
T Consensus       159 ~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~l~  238 (264)
T 1yv9_A          159 LLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVP  238 (264)
T ss_dssp             EEECHHHHHHHHHHHHTCCCEECSTTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSSTT
T ss_pred             cccCCcHHHHHHHHHhCCCccccCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHHHHHHcCCcEEEECCCCCCHHHHH
Confidence            1113334566788888888888999999999999999999999999999995 99999999999999999865443 222


Q ss_pred             c---ccchhcccccccccc
Q 024956          202 T---AADEVINSLLDLRPE  217 (260)
Q Consensus       202 ~---~~~~~v~~~~~l~~~  217 (260)
                      .   .|+++++++.++...
T Consensus       239 ~~~~~~d~v~~~l~el~~~  257 (264)
T 1yv9_A          239 TLPTPPTYVVDSLDEWTFE  257 (264)
T ss_dssp             TCSSCCSEEESSGGGCCTT
T ss_pred             hcCCCCCEEEecHHHHhhc
Confidence            2   689999999987654

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.90  E-value=6.1e-24  Score=163.92  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=98.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc----------cCCCCCChHHHHHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE----------VRTGKPSPDIFLEAA  158 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~----------~~~~kp~~~~~~~~l  158 (260)
                      ...+.|++.++|+.++++|++++++|++....+...+ +.+++..+|+..+...+          ....++++..+..++
T Consensus        74 ~~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~  152 (211)
T 1l7m_A           74 RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIK-EKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIA  152 (211)
T ss_dssp             TCCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHH-HHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHH
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHHHHH
Confidence            4567899999999999999999999999888777777 77787766654332111          123456789999999


Q ss_pred             HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc--cccccccc
Q 024956          159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPEK  218 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~--~~~l~~~~  218 (260)
                      +++|++++++++|||+.||+.|++.+|+.++ +..   ....+..+++++++  +.++...+
T Consensus       153 ~~lgi~~~~~~~iGD~~~Di~~~~~ag~~~~-~~~---~~~~~~~a~~v~~~~~~~~l~~~l  210 (211)
T 1l7m_A          153 KIEGINLEDTVAVGDGANDISMFKKAGLKIA-FCA---KPILKEKADICIEKRDLREILKYI  210 (211)
T ss_dssp             HHHTCCGGGEEEEECSGGGHHHHHHCSEEEE-ESC---CHHHHTTCSEEECSSCGGGGGGGC
T ss_pred             HHcCCCHHHEEEEecChhHHHHHHHCCCEEE-ECC---CHHHHhhcceeecchhHHHHHHhh
Confidence            9999999999999999999999999999754 332   34445678899988  88876543

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.90  E-value=1e-23  Score=184.72  Aligned_cols=111  Identities=19%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCC--ChHhHHHHHHhh--cCCccccceEEeccccCCCCCChHHHHHHH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNS--HRATIESKISYQ--HGWNESFSVIVGSDEVRTGKPSPDIFLEAA  158 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~--~~~~~~~~l~~~--~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l  158 (260)
                      +........++|++.++|+.|+++|++++++||+  ........+ ..  .++..+|+.++++++++..||+|++|..++
T Consensus        92 ~~~~~~~~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~-~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~  170 (555)
T 3i28_A           92 FDKAISARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGL-AQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLL  170 (555)
T ss_dssp             HHHHHHHCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHH-HHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHH
T ss_pred             HHHhHhhcCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHH-HHHhhhhhhheeEEEeccccCCCCCCHHHHHHHH
Confidence            3333445789999999999999999999999998  222122222 22  267789999999999999999999999999


Q ss_pred             HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +++|++|++|+||||+.+|+.+|+.+|+.+++++.+
T Consensus       171 ~~lg~~p~~~~~v~D~~~di~~a~~aG~~~~~~~~~  206 (555)
T 3i28_A          171 DTLKASPSEVVFLDDIGANLKPARDLGMVTILVQDT  206 (555)
T ss_dssp             HHHTCCGGGEEEEESCHHHHHHHHHHTCEEEECSSH
T ss_pred             HHcCCChhHEEEECCcHHHHHHHHHcCCEEEEECCC
Confidence            999999999999999999999999999999999873

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.89  E-value=8.2e-24  Score=163.11  Aligned_cols=184  Identities=17%  Similarity=0.161  Sum_probs=129.3

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC------ChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW------DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      +|+|+||+||||+|      ..+.++++++|.+.      ....+....+.    ....+.+ .++.  .+.    +.+ 
T Consensus         2 ~k~viFD~DGTL~d------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~--~~~----~~~-   63 (206)
T 1rku_A            2 MEIACLDLEGVLVP------EIWIAFAEKTGIDALKATTRDIPDYDVLMKQ----RLRILDE-HGLK--LGD----IQE-   63 (206)
T ss_dssp             CEEEEEESBTTTBC------CHHHHHHHHHTCGGGGCCTTTCCCHHHHHHH----HHHHHHH-TTCC--HHH----HHH-
T ss_pred             CcEEEEccCCcchh------hHHHHHHHHcCChHHHHHhcCcCCHHHHHHH----HHHHHHH-CCCC--HHH----HHH-
Confidence            68999999999999      35667777777542      11111111111    1111111 1221  221    111 


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccC---CCCCChHHHHHHH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVR---TGKPSPDIFLEAA  158 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~---~~kp~~~~~~~~l  158 (260)
                         .....+++|++.++|+.|+++ ++++++||+....++..+ +.+|+..+| +.++++++..   ..+|+|..+..++
T Consensus        64 ---~~~~~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~~~~~~p~p~~~~~~l  138 (206)
T 1rku_A           64 ---VIATLKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSV  138 (206)
T ss_dssp             ---HHTTCCCCTTHHHHHHHHHTT-SEEEEEEEEEHHHHHHHH-HHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHH
T ss_pred             ---HHHhcCCCccHHHHHHHHHhc-CcEEEEECChHHHHHHHH-HHcCCcceecceeEEcCCceEEeeecCCCchHHHHH
Confidence               234678899999999999999 999999999999888888 889999999 5666654442   1248889999999


Q ss_pred             HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchh-cccccccccccc
Q 024956          159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEV-INSLLDLRPEKW  219 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~-v~~~~~l~~~~~  219 (260)
                      ++++..|++++||||+.+|+.+|+.+|+.+++ +.   .... ...++.+ ++++.++...+.
T Consensus       139 ~~l~~~~~~~~~iGD~~~Di~~a~~aG~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~~l~  197 (206)
T 1rku_A          139 IAFKSLYYRVIAAGDSYNDTTMLSEAHAGILF-HA---PENVIREFPQFPAVHTYEDLKREFL  197 (206)
T ss_dssp             HHHHHTTCEEEEEECSSTTHHHHHHSSEEEEE-SC---CHHHHHHCTTSCEECSHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEeCChhhHHHHHhcCccEEE-CC---cHHHHHHHhhhccccchHHHHHHHH
Confidence            99999999999999999999999999998664 32   2222 2345554 888888877654

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.89  E-value=2.9e-22  Score=157.16  Aligned_cols=180  Identities=16%  Similarity=0.074  Sum_probs=119.8

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh---------hhccCC-CHHHHHHHHHHHhCCCCCHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK---------HKIVGK-TPLEEAAIIVEDYGLPCAKHEFV   76 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~   76 (260)
                      +++++|+||+||||+|+....  .+...+...+.......+         ....+. ......+.....+. ....+++.
T Consensus         2 ~~~k~viFDlDGTL~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~   78 (232)
T 3fvv_A            2 TTRRLALFDLDHTLLPLDSDY--QWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLA-AHSPVELA   78 (232)
T ss_dssp             CCCEEEEECCBTTTBSSCHHH--HHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH-TSCHHHHH
T ss_pred             CCCcEEEEeCCCCCcCCchHH--HHHHHHHHcCCCCccHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhc-CCCHHHHH
Confidence            457899999999999986543  344444444432011111         001121 22222222222221 22344444


Q ss_pred             HHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec-------c---ccCC
Q 024956           77 NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-------D---EVRT  146 (260)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~-------~---~~~~  146 (260)
                      +...+.+..... ..++||+.++|+.|+++|++++|+|++....++..+ +.+|+..++...+..       .   ....
T Consensus        79 ~~~~~~~~~~~~-~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~  156 (232)
T 3fvv_A           79 AWHEEFMRDVIR-PSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIA-RAFGVQHLIATDPEYRDGRYTGRIEGTPSF  156 (232)
T ss_dssp             HHHHHHHHHTTG-GGCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCCEEEECEEEEETTEEEEEEESSCSS
T ss_pred             HHHHHHHHHhhh-hhcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCEEEEcceEEECCEEeeeecCCCCc
Confidence            444444443332 267999999999999999999999999999999888 888987666443221       1   2234


Q ss_pred             CCCChHHHHHHHHHcC---CCCCcEEEEecCHhhHHHHHHcCCeEEEE
Q 024956          147 GKPSPDIFLEAAKRLN---MEPSSSLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~---~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      .++++..++.++++++   ++|+++++|||+.+|+.+++.+|+.++..
T Consensus       157 ~~~K~~~~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~~~  204 (232)
T 3fvv_A          157 REGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAAN  204 (232)
T ss_dssp             THHHHHHHHHHHHHTTCCGGGSSEEEEEECCGGGHHHHHHSSEEEEES
T ss_pred             chHHHHHHHHHHHHcCCCcCchhheEEEeCCHhhHHHHHhCCCeEEEC
Confidence            5667788999999999   99999999999999999999999887653

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.87  E-value=1.1e-22  Score=158.35  Aligned_cols=130  Identities=21%  Similarity=0.261  Sum_probs=109.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEE-ec-----------
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIV-GS-----------  141 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~-~~-----------  141 (260)
                      ..+++|++.++|++|+++|++++++||+..               ..+...+ +.+|+.  |+.++ +.           
T Consensus        54 ~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--~~~~~~~~~~~~g~~~~~~  130 (218)
T 2o2x_A           54 EIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELL-REEGVF--VDMVLACAYHEAGVGPLAI  130 (218)
T ss_dssp             GCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHH-HHTTCC--CSEEEEECCCTTCCSTTCC
T ss_pred             cCeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHH-HHcCCc--eeeEEEeecCCCCceeecc
Confidence            457899999999999999999999999988               5677777 777874  56544 32           


Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCccc-cccccchhcccccccccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTH-RYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~-~~~~~~~~v~~~~~l~~~~~  219 (260)
                      +.....||++..++.++++++++|++++||||+.+|+.+|+.+|+.+ +++.++..... ....++++++++.+|.+.+.
T Consensus       131 ~~~~~~KP~~~~~~~~~~~~~i~~~~~~~VGD~~~Di~~a~~aG~~~~i~v~~g~~~~~~~~~~~~~~i~~l~el~~~l~  210 (218)
T 2o2x_A          131 PDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEAAVQPGFAIRPLRDSSELGDLLAAIE  210 (218)
T ss_dssp             SSCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCCEEETTEEEEEESSHHHHHHHHHHHH
T ss_pred             cCCccCCCCHHHHHHHHHHcCCCHHHEEEEeCCHHHHHHHHHCCCCEeEEEecCCCCcccccCCCCEecccHHHHHHHHH
Confidence            55678999999999999999999999999999999999999999999 99988654332 24578999999999988775


Q ss_pred             CC
Q 024956          220 GL  221 (260)
Q Consensus       220 ~l  221 (260)
                      .+
T Consensus       211 ~~  212 (218)
T 2o2x_A          211 TL  212 (218)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.87  E-value=1.2e-23  Score=163.10  Aligned_cols=128  Identities=14%  Similarity=0.094  Sum_probs=97.2

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc--cccce--EEeccc----cCCCCCChHHH-HHHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN--ESFSV--IVGSDE----VRTGKPSPDIF-LEAAK  159 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~--~~f~~--i~~~~~----~~~~kp~~~~~-~~~l~  159 (260)
                      ...++|++.++++.|+++|++++++|++....++..+ +.+|+.  .+|..  +++.+.    ....+|++..+ ..+++
T Consensus        80 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  158 (219)
T 3kd3_A           80 PNLLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFA-DYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDK  158 (219)
T ss_dssp             TTTBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHH
T ss_pred             cccCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHH
Confidence            4558899999999999999999999999999988888 888884  35543  222222    24466665544 44556


Q ss_pred             HcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC--CCccccccccchhccccccccccc
Q 024956          160 RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL--PKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       160 ~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~--~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      .++++|+++++|||+.||+.|+ ++|+.++++..+  ......+..++++++++.|+.+.+
T Consensus       159 ~~~~~~~~~~~vGD~~~Di~~~-~~G~~~~~v~~~~~~~~~~~~~~ad~v~~~~~el~~~l  218 (219)
T 3kd3_A          159 AKGLIDGEVIAIGDGYTDYQLY-EKGYATKFIAYMEHIEREKVINLSKYVARNVAELASLI  218 (219)
T ss_dssp             HGGGCCSEEEEEESSHHHHHHH-HHTSCSEEEEECSSCCCHHHHHHCSEEESSHHHHHHHH
T ss_pred             HhCCCCCCEEEEECCHhHHHHH-hCCCCcEEEeccCccccHHHHhhcceeeCCHHHHHHhh
Confidence            6699999999999999999998 589987666553  323334677999999999987654

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.87  E-value=2e-22  Score=145.16  Aligned_cols=100  Identities=20%  Similarity=0.220  Sum_probs=93.5

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE  172 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG  172 (260)
                      +|++.++|++|+++|++++++||+....+...+ +.+++..+|+.+++++..+..||+++.++.++++++++|++++|||
T Consensus        20 ~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vg   98 (137)
T 2pr7_A           20 QRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPI-RELETNGVVDKVLLSGELGVEKPEEAAFQAAADAIDLPMRDCVLVD   98 (137)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHH-HHHHHTTSSSEEEEHHHHSCCTTSHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHCChHhhccEEEEeccCCCCCCCHHHHHHHHHHcCCCcccEEEEc
Confidence            457778999999999999999999998888888 7788899999999999899999999999999999999999999999


Q ss_pred             cCHhhHHHHHHcCCeEEEEcC
Q 024956          173 DSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       173 D~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      |+.+|+.+|+.+|+.++++++
T Consensus        99 D~~~di~~a~~~G~~~i~~~~  119 (137)
T 2pr7_A           99 DSILNVRGAVEAGLVGVYYQQ  119 (137)
T ss_dssp             SCHHHHHHHHHHTCEEEECSC
T ss_pred             CCHHHHHHHHHCCCEEEEeCC
Confidence            999999999999999999977

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.87  E-value=4.3e-23  Score=175.57  Aligned_cols=193  Identities=15%  Similarity=0.144  Sum_probs=129.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhc-cCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKI-VGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      .+++|+|+||+||||++...     +..+.+..+.......+ ... .+. ...+.+......+. ... .+.       
T Consensus       182 ~~~~k~viFD~DgTLi~~~~-----~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~-~~~-~~~-------  247 (415)
T 3p96_A          182 RRAKRLIVFDVDSTLVQGEV-----IEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLA-GLP-ATV-------  247 (415)
T ss_dssp             TTCCCEEEECTBTTTBSSCH-----HHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTT-TCB-THH-------
T ss_pred             ccCCcEEEEcCcccCcCCch-----HHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhc-CCC-HHH-------
Confidence            35689999999999999853     23334444432111111 111 111 12222222222221 011 111       


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEE-------ec---cccCCCCCChH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIV-------GS---DEVRTGKPSPD  152 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~-------~~---~~~~~~kp~~~  152 (260)
                      +........++||+.++|+.|++.|++++++||+....++..+ +.+|+..+|+..+       ++   +.+...||+++
T Consensus       248 ~~~~~~~~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~-~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~  326 (415)
T 3p96_A          248 IDEVAGQLELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLA-EELMLDYVAANELEIVDGTLTGRVVGPIIDRAGKAT  326 (415)
T ss_dssp             HHHHHHHCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCSEEEEECEEEETTEEEEEECSSCCCHHHHHH
T ss_pred             HHHHHHhCccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HHcCccceeeeeEEEeCCEEEeeEccCCCCCcchHH
Confidence            1112234689999999999999999999999999999999888 8899987776432       22   24455899999


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--cccccccc
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRPE  217 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~~  217 (260)
                      .++.+++++|++|++++||||+.+|+.+++.+|+.+++ +.   .+..+..+++++.  ++.+++..
T Consensus       327 ~~~~~~~~~gi~~~~~i~vGD~~~Di~~a~~aG~~va~-~~---~~~~~~~ad~~i~~~~l~~ll~~  389 (415)
T 3p96_A          327 ALREFAQRAGVPMAQTVAVGDGANDIDMLAAAGLGIAF-NA---KPALREVADASLSHPYLDTVLFL  389 (415)
T ss_dssp             HHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE-SC---CHHHHHHCSEEECSSCTTHHHHH
T ss_pred             HHHHHHHHcCcChhhEEEEECCHHHHHHHHHCCCeEEE-CC---CHHHHHhCCEEEccCCHHHHHHH
Confidence            99999999999999999999999999999999998776 43   4445566666654  55555443

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.87  E-value=9.4e-22  Score=149.44  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=92.3

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCC-hHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSH-RATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~-~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      ....++|++.++|++|+++|++++++||+. ...+...+ +.+++..+|+.++..     .+|++..+..++++++++|+
T Consensus        65 ~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l-~~~gl~~~f~~~~~~-----~~~k~~~~~~~~~~~~~~~~  138 (187)
T 2wm8_A           65 QDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLL-ELFDLFRYFVHREIY-----PGSKITHFERLQQKTGIPFS  138 (187)
T ss_dssp             CEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHH-HHTTCTTTEEEEEES-----SSCHHHHHHHHHHHHCCCGG
T ss_pred             cccCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHH-HHcCcHhhcceeEEE-----eCchHHHHHHHHHHcCCChH
Confidence            356789999999999999999999999998 68888888 889999999987543     25778999999999999999


Q ss_pred             cEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          167 SSLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                      +++||||+.+|+.+|+.+|+.++++.++..
T Consensus       139 ~~~~igD~~~Di~~a~~aG~~~i~v~~g~~  168 (187)
T 2wm8_A          139 QMIFFDDERRNIVDVSKLGVTCIHIQNGMN  168 (187)
T ss_dssp             GEEEEESCHHHHHHHHTTTCEEEECSSSCC
T ss_pred             HEEEEeCCccChHHHHHcCCEEEEECCCCC
Confidence            999999999999999999999999988654

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.86  E-value=8.1e-24  Score=161.69  Aligned_cols=173  Identities=13%  Similarity=0.205  Sum_probs=123.8

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCC-CChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh-
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKE-WDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-   86 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   86 (260)
                      .|+|+||+||||+|+...+..++.+.++  |.+ .+.+.+..+.   ....+.    .. .+    +..+.+.+.+... 
T Consensus         2 ~k~viFDlDGTL~Ds~~~~~~~~~~~~~--g~~~~~~~~~~~~~---~~~~~~----~~-~~----~~~~~~~~~~~~~~   67 (193)
T 2i7d_A            2 SVRVLVDMDGVLADFEAGLLRGFRRRFP--EEPHVPLEQRRGFL---AREQYR----AL-RP----DLADKVASVYEAPG   67 (193)
T ss_dssp             CEEEEECSBTTTBCHHHHHHHHHHHHST--TSCCCCGGGCCSSC---HHHHHH----HH-CT----THHHHHHHHHTSTT
T ss_pred             CcEEEEECCCcCccchhHHHHHHHHHhc--CCCCCCHHHHHHhh---HHHHHH----HH-hH----HHHHHHHHHHHhcC
Confidence            4789999999999999988888888776  554 4444443332   222222    22 11    2234444555443 


Q ss_pred             -hccCCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           87 -LCKVKALPGANRLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        87 -~~~~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                       .....++||+.++|++|+++ |++++++||+....+...+ +.+|+   |+.++++              .++++++++
T Consensus        68 ~~~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l-~~~gl---f~~i~~~--------------~~~~~~~~~  129 (193)
T 2i7d_A           68 FFLDLEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVG-EKYRW---VEQHLGP--------------QFVERIILT  129 (193)
T ss_dssp             TTTTCCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHH-HHHHH---HHHHHCH--------------HHHTTEEEC
T ss_pred             ccccCccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHH-HHhCc---hhhhcCH--------------HHHHHcCCC
Confidence             23578899999999999999 9999999999988887778 77777   7776654              278889999


Q ss_pred             CCcEEEEecCHhh----HHHHH-HcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          165 PSSSLVIEDSVIG----VVAGK-AAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       165 ~~~~~~vGD~~~D----v~~a~-~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      |++++||||+.+|    +.+|+ .+|+.+++++++.+...........++++.+
T Consensus       130 ~~~~~~vgDs~~dD~~~i~~A~~~aG~~~i~~~~~~~~~~~~~~~~~~v~~~~~  183 (193)
T 2i7d_A          130 RDKTVVLGDLLIDDKDTVRGQEETPSWEHILFTCCHNRHLVLPPTRRRLLSWSD  183 (193)
T ss_dssp             SCGGGBCCSEEEESSSCCCSSCSSCSSEEEEECCGGGTTCCCCTTSCEECSTTS
T ss_pred             cccEEEECCchhhCcHHHhhcccccccceEEEEeccCcccccccchHHHhhHHH
Confidence            9999999999988    99999 9999999998744333211112235777733

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.86  E-value=1.6e-23  Score=160.53  Aligned_cols=180  Identities=14%  Similarity=0.189  Sum_probs=129.0

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh-
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-   86 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   86 (260)
                      ++|+|+||+||||+|+...+..++.++++++ ...+.+.+   .+.+..+.+..    ..    ... .+.+.+.+... 
T Consensus         3 ~~k~viFDlDGTL~Ds~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~----~~----~~~-~~~~~~~~~~~~   69 (197)
T 1q92_A            3 RALRVLVDMDGVLADFEGGFLRKFRARFPDQ-PFIALEDR---RGFWVSEQYGR----LR----PGL-SEKAISIWESKN   69 (197)
T ss_dssp             CCEEEEECSBTTTBCHHHHHHHHHHHHCTTS-CCCCGGGC---CSSCHHHHHHH----HS----TTH-HHHHHHHHTSTT
T ss_pred             CceEEEEeCCCCCccCcHHHHHHHHHHHhcC-CCCCHHHh---cCCcHHHHHHh----cC----HHH-HHHHHHHHHhhh
Confidence            4689999999999999999988998888766 23333332   23333333222    21    111 12233344332 


Q ss_pred             -hccCCCCccHHHHHHHHHHC-CCcEEEEeCCChHhHHHHHHhhcCCcc-ccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           87 -LCKVKALPGANRLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNE-SFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        87 -~~~~~~~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                       .....++||+.++|+.|+++ |++++|+||+....+...+ +.+++.. +|+                  ..+++++++
T Consensus        70 ~~~~~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l-~~~~l~~~~f~------------------~~~~~~l~~  130 (197)
T 1q92_A           70 FFFELEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPY-EKYAWVEKYFG------------------PDFLEQIVL  130 (197)
T ss_dssp             TTTTCCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHH-HHHHHHHHHHC------------------GGGGGGEEE
T ss_pred             hhhcCCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHH-HHhchHHHhch------------------HHHHHHhcc
Confidence             23578899999999999999 9999999999988777777 7778877 775                  457788999


Q ss_pred             CCCcEEEEecCHhh----HHHHH-HcCCeEEEEcCCCCccccccccchhccccc-ccccccc
Q 024956          164 EPSSSLVIEDSVIG----VVAGK-AAGMEVVAVPSLPKQTHRYTAADEVINSLL-DLRPEKW  219 (260)
Q Consensus       164 ~~~~~~~vGD~~~D----v~~a~-~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~-~l~~~~~  219 (260)
                      +|+++++|||+..|    +.+|+ ++|+.+++++++++...........++++. ++...+.
T Consensus       131 ~~~~~~~vgDs~~dD~~~~~~a~~~aG~~~i~~~~~~~~~~~~~~~~~~v~~~~~~l~~~l~  192 (197)
T 1q92_A          131 TRDKTVVSADLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAILD  192 (197)
T ss_dssp             CSCSTTSCCSEEEESCSCCCCSCSSCSSEEEEECCTTTTTCCCCTTCEEECCTTSCHHHHHH
T ss_pred             CCccEEEECcccccCCchhhhcccCCCceEEEecCcccccccccccchhhhhHHHHHHHHhc
Confidence            99999999999998    99999 999999999886554322122234688884 6655554

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.85  E-value=1.2e-21  Score=149.82  Aligned_cols=126  Identities=20%  Similarity=0.085  Sum_probs=94.9

Q ss_pred             hhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc-CCCCCChHHHHHHHHHcCC
Q 024956           85 DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV-RTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~-~~~kp~~~~~~~~l~~l~~  163 (260)
                      .......+.|++.++|+.|++.|++++++|++....+...  +.+|+..+++.+...+.. ...+|.+......++++  
T Consensus        73 ~~~~~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~l--  148 (201)
T 4ap9_A           73 RTREKVNVSPEARELVETLREKGFKVVLISGSFEEVLEPF--KELGDEFMANRAIFEDGKFQGIRLRFRDKGEFLKRF--  148 (201)
T ss_dssp             HGGGGCCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG--TTTSSEEEEEEEEEETTEEEEEECCSSCHHHHHGGG--
T ss_pred             HHHHhCCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH--HHcCchhheeeEEeeCCceECCcCCccCHHHHHHhc--
Confidence            3445678999999999999999999999999887766544  567777665555443321 11445555566677777  


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCC
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +++++++|||+.||+.+++.+|+.+++.+. ..      .++++++++.|+.+.+..+
T Consensus       149 ~~~~~i~iGD~~~Di~~~~~ag~~v~~~~~-~~------~ad~v~~~~~el~~~l~~l  199 (201)
T 4ap9_A          149 RDGFILAMGDGYADAKMFERADMGIAVGRE-IP------GADLLVKDLKELVDFIKNL  199 (201)
T ss_dssp             TTSCEEEEECTTCCHHHHHHCSEEEEESSC-CT------TCSEEESSHHHHHHHHHTC
T ss_pred             CcCcEEEEeCCHHHHHHHHhCCceEEECCC-Cc------cccEEEccHHHHHHHHHHh
Confidence            899999999999999999999998544433 21      7899999999988776543

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=99.85  E-value=6.5e-22  Score=164.90  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=145.6

Q ss_pred             cCCccccCHHHHHHHHHHHHHH-cCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHH------HHHhh--
Q 024956           16 LDGTLLNTDGMFSEVLKTFLVK-YGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYS------MFSDH--   86 (260)
Q Consensus        16 ~DGTL~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--   86 (260)
                      +|||....+ .+...++++... .+.  +.+.+....|.+..+..+.+.+.++..    ...+....      .....  
T Consensus       137 fD~t~~~~d-~i~~~l~~~a~~~~~i--~~~~~~~~~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  209 (384)
T 1qyi_A          137 LDNVKVGKN-NIYAALEEFATTELHV--SDATLFSLKGALWTLAQEVYQEWYLGS----KLYEDVEKKIARTTFKTGYIY  209 (384)
T ss_dssp             HTTCCSSHH-HHHHHHHHHHHHHTTC--SCCGGGSTTCHHHHHHHHHHHHHHHHH----HHHHHHHCSCCSCSSCCCTTT
T ss_pred             hcCCCccHH-HHHHHHHHHHHHhCCC--CHHHHHHhcCCCHHHHHHHHHHHcCCc----cCHHHHHhHHHHHHHHHHHHh
Confidence            478876543 344566666553 354  444556677776666666666654321    00111100      00000  


Q ss_pred             -hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccC-----------CCCCChH
Q 024956           87 -LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVR-----------TGKPSPD  152 (260)
Q Consensus        87 -~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~-----------~~kp~~~  152 (260)
                       .....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+  .++++++..           ..||+|+
T Consensus       210 ~~~~~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L-~~lgL~~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~  288 (384)
T 1qyi_A          210 QEIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPF-ENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPF  288 (384)
T ss_dssp             TCCBSSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTH
T ss_pred             hccCCCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHH-HHcCChHhcCCCEEEecccccccccccccccCCCCCCHH
Confidence             124578899999999999999999999999999998888 8889999999  788887654           4899999


Q ss_pred             HHHHHHHHcC--------------CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc----ccc-ccccchhcccccc
Q 024956          153 IFLEAAKRLN--------------MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ----THR-YTAADEVINSLLD  213 (260)
Q Consensus       153 ~~~~~l~~l~--------------~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~----~~~-~~~~~~~v~~~~~  213 (260)
                      .|..++++++              ++|++|+||||+.+|+.+|+++|+.++++.++...    ... ...++++++++.+
T Consensus       289 ~~~~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~~g~~~~~~~~~l~~~~ad~vi~sl~e  368 (384)
T 1qyi_A          289 SYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGE  368 (384)
T ss_dssp             HHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGG
T ss_pred             HHHHHHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCEEEEECCCccccccHHHHhhcCCCEEECCHHH
Confidence            9999999999              89999999999999999999999999999986532    111 2468999999999


Q ss_pred             ccccccC
Q 024956          214 LRPEKWG  220 (260)
Q Consensus       214 l~~~~~~  220 (260)
                      +...+..
T Consensus       369 L~~~l~~  375 (384)
T 1qyi_A          369 LRGVLDN  375 (384)
T ss_dssp             HHHHHSC
T ss_pred             HHHHHHH
Confidence            9877653

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.85  E-value=3.2e-22  Score=148.52  Aligned_cols=107  Identities=16%  Similarity=0.152  Sum_probs=89.2

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED  173 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD  173 (260)
                      |+..++|++|+++|++++++||+....+...+ +.+|+..+|+.         .||++..++.++++++++|++++||||
T Consensus        39 ~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l-~~~gl~~~~~~---------~kp~~~~~~~~~~~~~~~~~~~~~vGD  108 (162)
T 2p9j_A           39 VLDGIGIKLLQKMGITLAVISGRDSAPLITRL-KELGVEEIYTG---------SYKKLEIYEKIKEKYSLKDEEIGFIGD  108 (162)
T ss_dssp             HHHHHHHHHHHTTTCEEEEEESCCCHHHHHHH-HHTTCCEEEEC---------C--CHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred             ccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHH-HHcCCHhhccC---------CCCCHHHHHHHHHHcCCCHHHEEEECC
Confidence            45579999999999999999999999998888 88888766543         689999999999999999999999999


Q ss_pred             CHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          174 SVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       174 ~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +.+|+.+|+.+|+.+++.+.   .......++++++++.+
T Consensus       109 ~~~Di~~a~~ag~~~~~~~~---~~~~~~~a~~v~~~~~~  145 (162)
T 2p9j_A          109 DVVDIEVMKKVGFPVAVRNA---VEEVRKVAVYITQRNGG  145 (162)
T ss_dssp             SGGGHHHHHHSSEEEECTTS---CHHHHHHCSEECSSCSS
T ss_pred             CHHHHHHHHHCCCeEEecCc---cHHHHhhCCEEecCCCC
Confidence            99999999999998765432   33445568888888765

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.85  E-value=8.8e-23  Score=163.97  Aligned_cols=124  Identities=16%  Similarity=0.157  Sum_probs=97.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHH---HHHhhcCCccccceEEeccc-cCCCCCChHHHHHHHHHcCCCCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIES---KISYQHGWNESFSVIVGSDE-VRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~---~l~~~~gl~~~f~~i~~~~~-~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .+++++.++++.+ +.|+++ ++||........   .+ +..++..+|+.+++.+. .+.+||++..++.+++++|++|+
T Consensus       137 ~~~~~~~~~l~~l-~~~~~~-i~tn~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~  213 (271)
T 1vjr_A          137 LTYERLKKACILL-RKGKFY-IATHPDINCPSKEGPVP-DAGSIMAAIEASTGRKPDLIAGKPNPLVVDVISEKFGVPKE  213 (271)
T ss_dssp             CCHHHHHHHHHHH-TTTCEE-EESCCCSEECCTTSCEE-CHHHHHHHHHHHHSCCCSEECSTTSTHHHHHHHHHHTCCGG
T ss_pred             cCHHHHHHHHHHH-HCCCeE-EEECCCccccCCCCccc-cccHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHhCCCCc
Confidence            4568889999999 778887 888876543211   11 23345566777777777 88999999999999999999999


Q ss_pred             cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc-c---cccchhcccccccccc
Q 024956          167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y---TAADEVINSLLDLRPE  217 (260)
Q Consensus       167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~-~---~~~~~~v~~~~~l~~~  217 (260)
                      ++++|||++ ||+.||+.+|+.++++.++...... .   ..++++++++.++.+.
T Consensus       214 e~i~iGD~~~nDi~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~i~~l~el~~~  269 (271)
T 1vjr_A          214 RMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKA  269 (271)
T ss_dssp             GEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHHHHH
T ss_pred             eEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHhhcCCCCCEEECCHHHHHHH
Confidence            999999995 9999999999999999986544322 1   2688999999988654

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.84  E-value=3.8e-22  Score=159.77  Aligned_cols=208  Identities=15%  Similarity=0.142  Sum_probs=122.5

Q ss_pred             cccccEEEEecCCccccCH-------HHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHH--
Q 024956            6 KKLMSCVILDLDGTLLNTD-------GMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFV--   76 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--   76 (260)
                      |+++|+|+||+||||+++.       .....+ .+.+++.|..+.  ......|++.....+.+ ..+++......+.  
T Consensus         9 m~~~k~i~fDlDGTLl~s~~~~~~~~~~~~~a-~~~l~~~G~~~~--~~t~~~gr~~~~~~~~l-~~~g~~~~~~~~~~~   84 (271)
T 2x4d_A            9 LAGVRGVLLDISGVLYDSGAGGGTAIAGSVEA-VARLKRSRLKVR--FCTNESAASRAELVGQL-QRLGFDISEQEVTAP   84 (271)
T ss_dssp             TTTCCEEEECCBTTTEECCTTTCEECTTHHHH-HHHHHHSSSEEE--EECCCCSSCHHHHHHHH-HHTTCCCCGGGEECH
T ss_pred             HhcCCEEEEeCCCeEEecCCCCCccCcCHHHH-HHHHHHCCCcEE--EEECCCCCCHHHHHHHH-HHCCCCCCHHHeecH
Confidence            5568999999999999952       212222 334566675542  22333466555554444 4556543322111  


Q ss_pred             -HHHHHHHHhhh--ccCCC-----------------------------CccHHHHHHHHHHC-CCcEEEEeCCChHhHHH
Q 024956           77 -NEVYSMFSDHL--CKVKA-----------------------------LPGANRLIKHLSCH-GVPMALASNSHRATIES  123 (260)
Q Consensus        77 -~~~~~~~~~~~--~~~~~-----------------------------~~~~~~~l~~l~~~-g~~i~i~s~~~~~~~~~  123 (260)
                       ......+....  .....                             ++++.+.++.+++. |+++ ++++........
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-i~~~~~~~~~~~  163 (271)
T 2x4d_A           85 APAACQILKERGLRPYLLIHDGVRSEFDQIDTSNPNCVVIADAGESFSYQNMNNAFQVLMELEKPVL-ISLGKGRYYAAT  163 (271)
T ss_dssp             HHHHHHHHHHHTCCEEEECCGGGGGGGTTSCCSSCSEEEECCCGGGCCHHHHHHHHHHHHHCSSCCE-EEECCCSEEEET
T ss_pred             HHHHHHHHHHcCCEEEEEeCHHHHHHHHHcCCCCCCEEEEecCCCCcCHHHHHHHHHHHHhcCCCeE-EEEcCCcccccC
Confidence             11111111110  00112                             33455556666655 5655 444443322111


Q ss_pred             HHHhhcCCccccc---eEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCc-c
Q 024956          124 KISYQHGWNESFS---VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQ-T  198 (260)
Q Consensus       124 ~l~~~~gl~~~f~---~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~-~  198 (260)
                      .+ ...++..+++   ..++.+..+.+||++.+++.+++++|++++++++|||+. ||+.|++.+|+.++++.++... .
T Consensus       164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~a~~aG~~~~~v~~g~~~~~  242 (271)
T 2x4d_A          164 SG-LMLDVGPYMKALEYACGIKAEVVGKPSPEFFKSALQAIGVEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPS  242 (271)
T ss_dssp             TE-EEECHHHHHHHHHHHHTCCCEEESTTCHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHHTTCEEEEESSTTCCGG
T ss_pred             CC-cccChhHHHHHHHHHhCCceeeccCCCHHHHHHHHHHhCCCcceEEEECCCcHHHHHHHHHCCCcEEEEcCCCCCch
Confidence            11 1122222222   223345566799999999999999999999999999999 9999999999999999986322 2


Q ss_pred             cc---ccccchhcccccccccccc
Q 024956          199 HR---YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       199 ~~---~~~~~~~v~~~~~l~~~~~  219 (260)
                      ..   ...++++++++.++...+.
T Consensus       243 ~~~~~~~~~~~~~~~~~el~~~l~  266 (271)
T 2x4d_A          243 DEHHPEVKADGYVDNLAEAVDLLL  266 (271)
T ss_dssp             GGGCSSCCCSEEESSHHHHHHHHH
T ss_pred             hhcccCCCCCEEeCCHHHHHHHHH
Confidence            21   2458999999999876553

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=99.84  E-value=9.2e-22  Score=162.86  Aligned_cols=126  Identities=19%  Similarity=0.182  Sum_probs=100.9

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe----------ccccCCCCCChHHHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG----------SDEVRTGKPSPDIFLEA  157 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~----------~~~~~~~kp~~~~~~~~  157 (260)
                      ...+++|++.++++.|++.|++++++||+....++..+ +.+|+..+|+..+.          .+.+...||+++.++.+
T Consensus       175 ~~~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~-~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~  253 (335)
T 3n28_A          175 ETLPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLK-EQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTL  253 (335)
T ss_dssp             TTCCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHH
T ss_pred             HhCCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH-HHcCCCeEEeeeeEeeCCeeeeeecccccChhhhHHHHHHH
Confidence            35679999999999999999999999999998888888 88999887765431          23456679999999999


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccccc
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~  218 (260)
                      +++++++++++++|||+.||+.|++.+|+.+++ +.   .+..+..+++++  +++.++...+
T Consensus       254 ~~~lgi~~~~~v~vGDs~nDi~~a~~aG~~va~-~~---~~~~~~~a~~v~~~~~l~~v~~~L  312 (335)
T 3n28_A          254 AQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAY-HA---KPKVEAKAQTAVRFAGLGGVVCIL  312 (335)
T ss_dssp             HHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE-SC---CHHHHTTSSEEESSSCTHHHHHHH
T ss_pred             HHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEe-CC---CHHHHhhCCEEEecCCHHHHHHHH
Confidence            999999999999999999999999999998777 43   344445555544  3444444443

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=99.83  E-value=3.6e-21  Score=155.95  Aligned_cols=195  Identities=16%  Similarity=0.203  Sum_probs=133.1

Q ss_pred             ccccEEEEecCCccccCHHHHH----------------------------HHHHHHHHHcCCCC-ChhhhhhccCCCHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFS----------------------------EVLKTFLVKYGKEW-DGREKHKIVGKTPLE   57 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~----------------------------~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~   57 (260)
                      .++++|+||+||||+|+...+.                            .++.+++++++... +.+.+....|.+...
T Consensus        30 ~~i~~viFD~dGTL~ds~~~~~~~~~~~~~~~~~l~~~~~~e~~s~hp~~~a~~~~~~~~g~~~~~~~~~~~~~G~~~~~  109 (287)
T 3a1c_A           30 EKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHPIAEAIVKKALEHGIELGEPEKVEVIAGEGVVA  109 (287)
T ss_dssp             HHCCEEEEECCCCCBCSCCEEEEEEESSSCHHHHHHHHHHHTTTCCSHHHHHHHHHHHHTTCCCCCCSCEEEETTTEEEE
T ss_pred             hcCCEEEEeCCCCCcCCCEEEEEEEeCCCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCCccccccceeecCCCeEE
Confidence            4589999999999999866553                            77888888888653 334444444432211


Q ss_pred             --H---HHHHHHHhCCCCCHHHHHHHHHHHHHh------------h-----hccCCCCccHHHHHHHHHHCCCcEEEEeC
Q 024956           58 --E---AAIIVEDYGLPCAKHEFVNEVYSMFSD------------H-----LCKVKALPGANRLIKHLSCHGVPMALASN  115 (260)
Q Consensus        58 --~---~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~~l~~l~~~g~~i~i~s~  115 (260)
                        .   ...+....+...+ +.+ ..+...+..            .     .....++||+.++|+.|+++|++++++||
T Consensus       110 ~~~~~g~~~~~~~~~~~~~-~~~-~~~~~~~~~~g~~~i~~~~d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~  187 (287)
T 3a1c_A          110 DGILVGNKRLMEDFGVAVS-NEV-ELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITG  187 (287)
T ss_dssp             TTEEEECHHHHHHTTCCCC-HHH-HHHHHHHHHTTCEEEEEEETTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECCHHHHHhcCCCcc-HHH-HHHHHHHHhCCCeEEEEEECCEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEeC
Confidence              0   0011222222211 111 122222221            1     12457899999999999999999999999


Q ss_pred             CChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCC
Q 024956          116 SHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP  195 (260)
Q Consensus       116 ~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~  195 (260)
                      +....+...+ +.+|+..+|+.++       +.    ....++++++.. ++++||||+.+|+.+|+.+|+. +.+..  
T Consensus       188 ~~~~~~~~~l-~~~gl~~~f~~i~-------~~----~K~~~~~~l~~~-~~~~~vGDs~~Di~~a~~ag~~-v~~~~--  251 (287)
T 3a1c_A          188 DNWRSAEAIS-RELNLDLVIAEVL-------PH----QKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLG-IAVGS--  251 (287)
T ss_dssp             SCHHHHHHHH-HHHTCSEEECSCC-------TT----CHHHHHHHHTTT-CCEEEEECTTTCHHHHHHSSEE-EEECC--
T ss_pred             CCHHHHHHHH-HHhCCceeeeecC-------hH----HHHHHHHHHhcC-CeEEEEECCHHHHHHHHHCCee-EEeCC--
Confidence            9999888888 8889988777654       11    226788899988 9999999999999999999997 44432  


Q ss_pred             Cccccccccchhc--ccccccccccc
Q 024956          196 KQTHRYTAADEVI--NSLLDLRPEKW  219 (260)
Q Consensus       196 ~~~~~~~~~~~~v--~~~~~l~~~~~  219 (260)
                      ........+++++  +++.++...+.
T Consensus       252 ~~~~~~~~ad~v~~~~~~~~l~~~l~  277 (287)
T 3a1c_A          252 GSDVAVESGDIVLIRDDLRDVVAAIQ  277 (287)
T ss_dssp             CSCCSSCCSSEEESSSCTHHHHHHHH
T ss_pred             CCHHHHhhCCEEEeCCCHHHHHHHHH
Confidence            2233356788888  88888876654

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.83  E-value=2.6e-21  Score=145.44  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=88.7

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCC---------------ChHhHHHHHHhhcCCccccceEEec-----cccCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNS---------------HRATIESKISYQHGWNESFSVIVGS-----DEVRTGK  148 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~---------------~~~~~~~~l~~~~gl~~~f~~i~~~-----~~~~~~k  148 (260)
                      ..+++|++.++|++|+++|++++|+||+               ....+...+ +.+|+.  |+.++.+     ++.+..|
T Consensus        40 ~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~gl~--fd~v~~s~~~~~~~~~~~K  116 (176)
T 2fpr_A           40 KLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF-TSQGVQ--FDEVLICPHLPADECDCRK  116 (176)
T ss_dssp             GCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHH-HHTTCC--EEEEEEECCCGGGCCSSST
T ss_pred             HCcCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHH-HHcCCC--eeEEEEcCCCCcccccccC
Confidence            4678999999999999999999999998               456677777 778886  8888643     7788999


Q ss_pred             CChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          149 PSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       149 p~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      |+++.|+.++++++++|++++||||+.+|+.+|+++|+.++++.++
T Consensus       117 P~p~~~~~~~~~~gi~~~~~l~VGD~~~Di~~A~~aG~~~i~v~~~  162 (176)
T 2fpr_A          117 PKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRE  162 (176)
T ss_dssp             TSCGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBTT
T ss_pred             CCHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHcCCeEEEEcCC
Confidence            9999999999999999999999999999999999999999999884

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.83  E-value=4.3e-22  Score=162.81  Aligned_cols=127  Identities=17%  Similarity=0.257  Sum_probs=103.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhH--H-HHHHhhcC-CccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATI--E-SKISYQHG-WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~--~-~~l~~~~g-l~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .++|++.++++.|++.|+ ++++||......  . ..+ ...| +..+|+.+++++....+||++..++.+++++|++|+
T Consensus       156 ~~~~~~~~~l~~l~~~g~-~~i~tn~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~~KP~~~~~~~~~~~lgi~~~  233 (306)
T 2oyc_A          156 FSFAKLREACAHLRDPEC-LLVATDRDPWHPLSDGSRT-PGTGSLAAAVETASGRQALVVGKPSPYMFECITENFSIDPA  233 (306)
T ss_dssp             CCHHHHHHHHHHHTSTTS-EEEESCCCCEEECTTSCEE-ECHHHHHHHHHHHHTCCCEECSTTSTHHHHHHHHHSCCCGG
T ss_pred             CCHHHHHHHHHHHHcCCC-EEEEEcCCccccCCCCCcC-CCCcHHHHHHHHHhCCCceeeCCCCHHHHHHHHHHcCCChH
Confidence            456899999999999888 999999876543  1 122 3334 566778888888888999999999999999999999


Q ss_pred             cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----------ccccchhcccccccccccc
Q 024956          167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----------YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----------~~~~~~~v~~~~~l~~~~~  219 (260)
                      ++++|||++ +|+.+|+.+|+.++++.++......          ...|+++++++.+|...+.
T Consensus       234 e~l~vGD~~~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~~~~~~~pd~vi~~l~el~~~l~  297 (306)
T 2oyc_A          234 RTLMVGDRLETDILFGHRCGMTTVLTLTGVSRLEEAQAYLAAGQHDLVPHYYVESIADLTEGLE  297 (306)
T ss_dssp             GEEEEESCTTTHHHHHHHHTCEEEEESSSSCCHHHHHHHHHTTCGGGSCSEEESSGGGGGGGC-
T ss_pred             HEEEECCCchHHHHHHHHCCCeEEEECCCCCCHHHHHhhhcccccCCCCCEEECCHHHHHHHHH
Confidence            999999997 9999999999999999986543221          2468999999999987765

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.83  E-value=9.7e-22  Score=159.05  Aligned_cols=119  Identities=18%  Similarity=0.285  Sum_probs=98.7

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhH--H--HHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHc----CCCCC
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATI--E--SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRL----NMEPS  166 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~--~--~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l----~~~~~  166 (260)
                      ...++++.|+++|++ +++||.+....  .  ..+ ...++..+|+.+++++....+||+|..|+.+++++    +++|+
T Consensus       149 ~~~~l~~~L~~~g~~-~i~tn~~~~~~~~~~~~~~-~~~~l~~~f~~~~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~~  226 (284)
T 2hx1_A          149 DLNKTVNLLRKRTIP-AIVANTDNTYPLTKTDVAI-AIGGVATMIESILGRRFIRFGKPDSQMFMFAYDMLRQKMEISKR  226 (284)
T ss_dssp             HHHHHHHHHHHCCCC-EEEECCCSEEECSSSCEEE-CHHHHHHHHHHHHCSCEEEESTTSSHHHHHHHHHHHTTSCCCGG
T ss_pred             cHHHHHHHHhcCCCe-EEEECCCccccCcCCCccc-cCChHHHHHHHHhCCceeEecCCCHHHHHHHHHHHhhccCCCcc
Confidence            566777789999999 99999977654  2  112 44567788999999888889999999999999999    99999


Q ss_pred             cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc-c-------cccchhcccccccc
Q 024956          167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y-------TAADEVINSLLDLR  215 (260)
Q Consensus       167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~-~-------~~~~~~v~~~~~l~  215 (260)
                      +++||||++ +|+.+|+++|+.++++.++...... .       ..|+++++++.+|+
T Consensus       227 ~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~~~~~~pd~~~~~l~ell  284 (284)
T 2hx1_A          227 EILMVGDTLHTDILGGNKFGLDTALVLTGNTRIDDAETKIKSTGIVPTHICESAVIEL  284 (284)
T ss_dssp             GEEEEESCTTTHHHHHHHHTCEEEEESSSSSCGGGHHHHHHHHTCCCSEEESCSCCCC
T ss_pred             eEEEECCCcHHHHHHHHHcCCeEEEECCCCCCHHHHHhhhhccCCCCCEEccchhhhC
Confidence            999999996 9999999999999999986543322 2       46899999998874

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.83  E-value=1.8e-21  Score=144.77  Aligned_cols=99  Identities=11%  Similarity=0.053  Sum_probs=85.7

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +|++|+++|++++++||+....++..+ +.+|+..+|+.         .||+++.++.++++++++|++++||||+.+|+
T Consensus        39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~-~~~gl~~~~~~---------~kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di  108 (164)
T 3e8m_A           39 GIFWAHNKGIPVGILTGEKTEIVRRRA-EKLKVDYLFQG---------VVDKLSAAEELCNELGINLEQVAYIGDDLNDA  108 (164)
T ss_dssp             HHHHHHHTTCCEEEECSSCCHHHHHHH-HHTTCSEEECS---------CSCHHHHHHHHHHHHTCCGGGEEEECCSGGGH
T ss_pred             HHHHHHHCCCEEEEEeCCChHHHHHHH-HHcCCCEeecc---------cCChHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence            799999999999999999999999888 88888766554         38999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                      .+++.+|+.+++.+.   ....+..+++++.+
T Consensus       109 ~~~~~ag~~~~~~~~---~~~~~~~ad~v~~~  137 (164)
T 3e8m_A          109 KLLKRVGIAGVPASA---PFYIRRLSTIFLEK  137 (164)
T ss_dssp             HHHTTSSEEECCTTS---CHHHHTTCSSCCCC
T ss_pred             HHHHHCCCeEEcCCh---HHHHHHhCcEEecc
Confidence            999999997766443   34456678888877

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.83  E-value=5.4e-22  Score=159.84  Aligned_cols=196  Identities=17%  Similarity=0.164  Sum_probs=128.7

Q ss_pred             cccccEEEEecCCcccc----------------------------CHHHHHHHHHHHHHHcCCCCCh-hhhhhccCCCHH
Q 024956            6 KKLMSCVILDLDGTLLN----------------------------TDGMFSEVLKTFLVKYGKEWDG-REKHKIVGKTPL   56 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d----------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~   56 (260)
                      ++++|+|+||+||||+|                            +...+..++.+.+++.+..... ..+....+....
T Consensus        10 ~~~ik~i~FD~DGTL~d~~~~v~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~   89 (280)
T 3skx_A           10 AKDLQAVIFDKTGTLTEGRFGVTDIVGFNHSEDELLQIAASLEARSEHPIAAAIVEEAEKRGFGLTEVEEFRAIPGKGVE   89 (280)
T ss_dssp             GGGCCEEEEECCCCCEEEEEEEEEEEESSSCHHHHHHHHHHHHTTCCSHHHHHHHHHHHHTTCCCCCCEEEEEETTTEEE
T ss_pred             hcCCCEEEEeCCCcCCCCcEEEEEEEecCCCHHHHHHHHHHhhccCCCHHHHHHHHHHHhcCCCCCCccceeecCCCEEE
Confidence            46799999999999999                            8888888888888888765432 222222222111


Q ss_pred             HH---------HHHHHHHhCCCCCHHHHHHHHHHHHHhhh-----c--------cCCCCccHHHHHHHHHHCCCcEEEEe
Q 024956           57 EE---------AAIIVEDYGLPCAKHEFVNEVYSMFSDHL-----C--------KVKALPGANRLIKHLSCHGVPMALAS  114 (260)
Q Consensus        57 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~l~~l~~~g~~i~i~s  114 (260)
                      ..         ...+....+....  .....+.......+     .        ...++|++.++|+.|++.|++++++|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T  167 (280)
T 3skx_A           90 GIVNGRRYMVVSPGYIRELGIKTD--ESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLT  167 (280)
T ss_dssp             EEETTEEEEEECHHHHHHTTCCCC--TTHHHHHTTTCEEEEEEETTEEEEEEEEEEEECTTHHHHHHHHHHTTCEEEEEC
T ss_pred             EEECCEEEEEecHHHHHHcCCCch--HHHHHHHhCCCeEEEEEECCEEEEEEEecCCCCHhHHHHHHHHHHCCCEEEEEe
Confidence            00         0223344443322  11111111100000     0        01688999999999999999999999


Q ss_pred             CCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          115 NSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       115 ~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +.....+...+ +.+|+..+|+.+++.+.       ....+...+.+     ++++|||+.||+.|++.+|+.+++.+  
T Consensus       168 ~~~~~~~~~~~-~~~gl~~~f~~~~~~~k-------~~~~k~~~~~~-----~~~~vGD~~nDi~~~~~Ag~~va~~~--  232 (280)
T 3skx_A          168 GDNRFVAKWVA-EELGLDDYFAEVLPHEK-------AEKVKEVQQKY-----VTAMVGDGVNDAPALAQADVGIAIGA--  232 (280)
T ss_dssp             SSCHHHHHHHH-HHHTCSEEECSCCGGGH-------HHHHHHHHTTS-----CEEEEECTTTTHHHHHHSSEEEECSC--
T ss_pred             CCCHHHHHHHH-HHcCChhHhHhcCHHHH-------HHHHHHHHhcC-----CEEEEeCCchhHHHHHhCCceEEecC--
Confidence            99999999888 88999988888776542       23334344333     78999999999999999997544433  


Q ss_pred             CCccccccccchhc--ccccccccccc
Q 024956          195 PKQTHRYTAADEVI--NSLLDLRPEKW  219 (260)
Q Consensus       195 ~~~~~~~~~~~~~v--~~~~~l~~~~~  219 (260)
                       ........+++++  +++.++...+.
T Consensus       233 -~~~~~~~~a~~~~~~~~~~~l~~~l~  258 (280)
T 3skx_A          233 -GTDVAVETADIVLVRNDPRDVAAIVE  258 (280)
T ss_dssp             -CSSSCCCSSSEECSSCCTHHHHHHHH
T ss_pred             -CcHHHHhhCCEEEeCCCHHHHHHHHH
Confidence             3444455566655  88888877654

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.82  E-value=1.5e-22  Score=152.34  Aligned_cols=107  Identities=12%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +|++|+++|++++++|+.....++..+ +.+|+.     ++..     .||++..++.+++++++++++++||||+.||+
T Consensus        47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~lgi~-----~~~~-----~~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~  115 (176)
T 3mmz_A           47 GIAALRKSGLTMLILSTEQNPVVAARA-RKLKIP-----VLHG-----IDRKDLALKQWCEEQGIAPERVLYVGNDVNDL  115 (176)
T ss_dssp             HHHHHHHTTCEEEEEESSCCHHHHHHH-HHHTCC-----EEES-----CSCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             HHHHHHHCCCeEEEEECcChHHHHHHH-HHcCCe-----eEeC-----CCChHHHHHHHHHHcCCCHHHEEEEcCCHHHH
Confidence            899999999999999999999999888 888876     3322     38999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhccc------ccccccccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINS------LLDLRPEKW  219 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~------~~~l~~~~~  219 (260)
                      .+++.+|+.+++.+.   ....+..+++++.+      +.++.+.+.
T Consensus       116 ~~~~~ag~~v~~~~~---~~~~~~~ad~v~~~~~~~g~~~~l~~~l~  159 (176)
T 3mmz_A          116 PCFALVGWPVAVASA---HDVVRGAARAVTTVPGGDGAIREIASWIL  159 (176)
T ss_dssp             HHHHHSSEEEECTTC---CHHHHHHSSEECSSCTTTTHHHHHHHHHH
T ss_pred             HHHHHCCCeEECCCh---hHHHHHhCCEEecCCCCCcHHHHHHHHHH
Confidence            999999987655443   34456778888888      666665554

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.82  E-value=1.5e-20  Score=145.35  Aligned_cols=99  Identities=13%  Similarity=0.137  Sum_probs=80.2

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec-c--ccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS-D--EVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~-~--~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .+.|++.++|++|+++|++++++||+........+ +.  +..+|+.++.+ +  .....||+|+.+..+++++++    
T Consensus        88 ~~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l-~~--l~~~f~~i~~~~~~~~~~~~KP~p~~~~~~~~~~g~----  160 (211)
T 2b82_A           88 IPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVS-KT--LADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNI----  160 (211)
T ss_dssp             EECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHH-HH--HHHHTTCCTTTBCCCEECCCCTTCCCSHHHHHHTTE----
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH-HH--HHHhcCccccccchhhhcCCCCCHHHHHHHHHHCCC----
Confidence            35779999999999999999999999876554444 33  44556665322 1  245689999999999999998    


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                      ++||||+.+|+.+|+.+|+.++++.++..
T Consensus       161 ~l~VGDs~~Di~aA~~aG~~~i~v~~g~~  189 (211)
T 2b82_A          161 RIFYGDSDNDITAARDVGARGIRILRASN  189 (211)
T ss_dssp             EEEEESSHHHHHHHHHTTCEEEECCCCTT
T ss_pred             EEEEECCHHHHHHHHHCCCeEEEEecCCC
Confidence            99999999999999999999999988543

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.82  E-value=1.3e-21  Score=156.67  Aligned_cols=125  Identities=13%  Similarity=0.119  Sum_probs=101.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhH--HHHHHhh-cCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATI--ESKISYQ-HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~--~~~l~~~-~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      ..++|++.++++.|+ +|+++ ++||.+....  ...+ .. .++..+|+.+++++....+||+|..|+.++++  ++|+
T Consensus       129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~~~~~~~~~~l-~~~~~l~~~~~~~~~~~~~~~~KP~~~~~~~~~~~--~~~~  203 (263)
T 1zjj_A          129 DLTYEKLKYATLAIR-NGATF-IGTNPDATLPGEEGIY-PGAGSIIAALKVATNVEPIIIGKPNEPMYEVVREM--FPGE  203 (263)
T ss_dssp             TCBHHHHHHHHHHHH-TTCEE-EESCCCSEEEETTEEE-ECHHHHHHHHHHHHCCCCEECSTTSHHHHHHHHHH--STTC
T ss_pred             CCCHHHHHHHHHHHH-CCCEE-EEECCCccccCCCCCc-CCcHHHHHHHHHHhCCCccEecCCCHHHHHHHHHh--CCcc
Confidence            456889999999999 88888 9999877543  2223 22 45666788888888888999999999999999  9999


Q ss_pred             cEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc-c---cccchhcccccccccccc
Q 024956          167 SSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR-Y---TAADEVINSLLDLRPEKW  219 (260)
Q Consensus       167 ~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~-~---~~~~~~v~~~~~l~~~~~  219 (260)
                      +++||||++ +|+.+|+.+|+.++++.++...... .   ..++++++++.++.+.+.
T Consensus       204 ~~~~VGD~~~~Di~~A~~aG~~~i~v~~g~~~~~~~~~~~~~p~~~~~~l~el~~~l~  261 (263)
T 1zjj_A          204 ELWMVGDRLDTDIAFAKKFGMKAIMVLTGVSSLEDIKKSEYKPDLVLPSVYELIDYLK  261 (263)
T ss_dssp             EEEEEESCTTTHHHHHHHTTCEEEEESSSSCCHHHHTTCSSCCSEEESSGGGGGGGGC
T ss_pred             cEEEECCChHHHHHHHHHcCCeEEEECCCCCChHHHHhcCCCCCEEECCHHHHHHHHh
Confidence            999999997 9999999999999999886543222 2   268999999999987654

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.82  E-value=1.2e-20  Score=151.03  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=70.7

Q ss_pred             ccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCcccc-cc---ccchhc
Q 024956          134 SFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR-YT---AADEVI  208 (260)
Q Consensus       134 ~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~---~~~~~v  208 (260)
                      +|+.+++.+....+||++..++.++++++++++++++|||+ .+|+.+|+.+|+.++++.++...... ..   .|++++
T Consensus       168 ~~~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~g~~~~~~~~~~~~~pd~~~  247 (264)
T 3epr_A          168 LLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVL  247 (264)
T ss_dssp             HHHHHHSCCCEECSTTSHHHHHHHHHHHTSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCGGGGGGCSSCCSEEE
T ss_pred             HHHHHhCCCcccCCCCCHHHHHHHHHHhCcCcccEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEEE
Confidence            34455566777889999999999999999999999999999 59999999999999999987554443 22   689999


Q ss_pred             ccccccccc
Q 024956          209 NSLLDLRPE  217 (260)
Q Consensus       209 ~~~~~l~~~  217 (260)
                      +++.+|...
T Consensus       248 ~~l~~l~~~  256 (264)
T 3epr_A          248 ASLDEWTFN  256 (264)
T ss_dssp             SCGGGCCSC
T ss_pred             CCHHHHhcc
Confidence            999998643

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.82  E-value=6.2e-21  Score=144.00  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=88.2

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS  174 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~  174 (260)
                      ...++|++|+++|++++++|++....+...+ +.+++..+|+.         .||++..++.++++++++|++++||||+
T Consensus        39 ~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~-~~lgl~~~~~~---------~k~k~~~~~~~~~~~~~~~~~~~~vGD~  108 (180)
T 1k1e_A           39 RDGLGIKMLMDADIQVAVLSGRDSPILRRRI-ADLGIKLFFLG---------KLEKETACFDLMKQAGVTAEQTAYIGDD  108 (180)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCCCHHHHHHH-HHHTCCEEEES---------CSCHHHHHHHHHHHHTCCGGGEEEEECS
T ss_pred             chHHHHHHHHHCCCeEEEEeCCCcHHHHHHH-HHcCCceeecC---------CCCcHHHHHHHHHHcCCCHHHEEEECCC
Confidence            3347999999999999999999999998888 88888765532         5889999999999999999999999999


Q ss_pred             HhhHHHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956          175 VIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL  212 (260)
Q Consensus       175 ~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~  212 (260)
                      .||+.+++.+|+.+++.+.   ....+..+++++.+..
T Consensus       109 ~~Di~~~~~ag~~~~~~~~---~~~~~~~ad~v~~~~~  143 (180)
T 1k1e_A          109 SVDLPAFAACGTSFAVADA---PIYVKNAVDHVLSTHG  143 (180)
T ss_dssp             GGGHHHHHHSSEEEECTTS---CHHHHTTSSEECSSCT
T ss_pred             HHHHHHHHHcCCeEEeCCc---cHHHHhhCCEEecCCC
Confidence            9999999999998775433   3444567888887764

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.81  E-value=3.7e-21  Score=146.33  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=85.0

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +|++|+++|++++++|+.....++..+ +.+|+..+|+.+         ++|++.++.+++++++++++++||||+.||+
T Consensus        54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~lgl~~~f~~~---------~~K~~~~~~~~~~~g~~~~~~~~vGD~~nDi  123 (189)
T 3mn1_A           54 GIKMLIASGVTTAIISGRKTAIVERRA-KSLGIEHLFQGR---------EDKLVVLDKLLAELQLGYEQVAYLGDDLPDL  123 (189)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHH-HHHTCSEEECSC---------SCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             HHHHHHHCCCEEEEEECcChHHHHHHH-HHcCCHHHhcCc---------CChHHHHHHHHHHcCCChhHEEEECCCHHHH
Confidence            899999999999999999999999888 889987777654         6677999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                      .+++.+|+.+++.+.   ....+..+++++.+
T Consensus       124 ~~~~~ag~~~~~~~~---~~~~~~~ad~v~~~  152 (189)
T 3mn1_A          124 PVIRRVGLGMAVANA---ASFVREHAHGITRA  152 (189)
T ss_dssp             HHHHHSSEEEECTTS---CHHHHHTSSEECSS
T ss_pred             HHHHHCCCeEEeCCc---cHHHHHhCCEEecC
Confidence            999999997654332   34446677888877

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.81  E-value=7.8e-21  Score=146.59  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=86.7

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +|++|+++|++++++|+.....++..+ +.+|+..+|+.+         +|+++.++.+++++++++++++||||+.||+
T Consensus        84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l-~~lgi~~~f~~~---------k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi  153 (211)
T 3ij5_A           84 GIRCLITSDIDVAIITGRRAKLLEDRA-NTLGITHLYQGQ---------SDKLVAYHELLATLQCQPEQVAYIGDDLIDW  153 (211)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHH-HHHTCCEEECSC---------SSHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             HHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCchhhccc---------CChHHHHHHHHHHcCcCcceEEEEcCCHHHH
Confidence            899999999999999999999999888 888987766543         7889999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      .+++.+|+.++..+.   ....+..+++++.+.
T Consensus       154 ~~~~~ag~~~a~~~~---~~~~~~~Ad~v~~~~  183 (211)
T 3ij5_A          154 PVMAQVGLSVAVADA---HPLLLPKAHYVTRIK  183 (211)
T ss_dssp             HHHTTSSEEEECTTS---CTTTGGGSSEECSSC
T ss_pred             HHHHHCCCEEEeCCc---cHHHHhhCCEEEeCC
Confidence            999999987665443   444567788888776

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.81  E-value=4.3e-20  Score=147.89  Aligned_cols=87  Identities=25%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             cccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecC-HhhHHHHHHcCCeEEEEcCCCCcccc-cc---ccchh
Q 024956          133 ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDS-VIGVVAGKAAGMEVVAVPSLPKQTHR-YT---AADEV  207 (260)
Q Consensus       133 ~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~-~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~---~~~~~  207 (260)
                      .+|+.+++.+....+||++..++.+++++|++++++++|||+ .||+.|++.+|+.+++++++....+. +.   .|+++
T Consensus       168 ~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~~Di~~~~~aG~~~~~v~~g~~~~~~~~~~~~~~d~v  247 (266)
T 3pdw_A          168 SVLTVSTGVQPVFIGKPESIIMEQAMRVLGTDVSETLMVGDNYATDIMAGINAGMDTLLVHTGVTKREHMTDDMEKPTHA  247 (266)
T ss_dssp             HHHHHHHCCCCEECSTTSSHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEECCC------CCTTSCCCSEE
T ss_pred             HHHHHHhCCCccccCCCCHHHHHHHHHHcCCChhhEEEECCCcHHHHHHHHHCCCeEEEECCCCCChHHHHhcCCCCCEE
Confidence            344555566677889999999999999999999999999999 69999999999999999987654443 33   59999


Q ss_pred             cccccccccccc
Q 024956          208 INSLLDLRPEKW  219 (260)
Q Consensus       208 v~~~~~l~~~~~  219 (260)
                      ++++.||.+.+.
T Consensus       248 ~~~~~el~~~~~  259 (266)
T 3pdw_A          248 IDSLTEWIPYIE  259 (266)
T ss_dssp             ESSGGGGHHHHH
T ss_pred             eCCHHHHHHHhh
Confidence            999999987765

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.79  E-value=1.1e-20  Score=144.14  Aligned_cols=100  Identities=14%  Similarity=0.202  Sum_probs=85.2

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      .|+.|++.|++++++||+....++..+ +.+|+..+|+.         .||++..++.++++++++|++++||||+.||+
T Consensus        60 ~l~~L~~~G~~~~ivT~~~~~~~~~~l-~~lgi~~~~~~---------~k~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi  129 (195)
T 3n07_A           60 GVKALMNAGIEIAIITGRRSQIVENRM-KALGISLIYQG---------QDDKVQAYYDICQKLAIAPEQTGYIGDDLIDW  129 (195)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHH-HHTTCCEEECS---------CSSHHHHHHHHHHHHCCCGGGEEEEESSGGGH
T ss_pred             HHHHHHHCCCEEEEEECcCHHHHHHHH-HHcCCcEEeeC---------CCCcHHHHHHHHHHhCCCHHHEEEEcCCHHHH
Confidence            589999999999999999999999888 88888765543         38999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      .+++.+|+.+++.+.   .+..+..+++++.+.
T Consensus       130 ~~~~~ag~~va~~na---~~~~~~~ad~v~~~~  159 (195)
T 3n07_A          130 PVMEKVALRVCVADG---HPLLAQRANYVTHIK  159 (195)
T ss_dssp             HHHTTSSEEEECTTS---CHHHHHHCSEECSSC
T ss_pred             HHHHHCCCEEEECCh---HHHHHHhCCEEEcCC
Confidence            999999987665433   445567788887764

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.78  E-value=3.4e-20  Score=141.16  Aligned_cols=100  Identities=15%  Similarity=0.175  Sum_probs=85.4

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      .|++|++.|++++++||++...+...+ +.+|+..+|+.+         ||++..++.++++++++|++++||||+.||+
T Consensus        54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l-~~lgl~~~~~~~---------kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di  123 (191)
T 3n1u_A           54 GLKLLMAAGIQVAIITTAQNAVVDHRM-EQLGITHYYKGQ---------VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDL  123 (191)
T ss_dssp             HHHHHHHTTCEEEEECSCCSHHHHHHH-HHHTCCEEECSC---------SSCHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             HHHHHHHCCCeEEEEeCcChHHHHHHH-HHcCCccceeCC---------CChHHHHHHHHHHhCCCHHHEEEECCCHHHH
Confidence            588999999999999999999999888 888987666543         8999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      .+++.+|+.+++.+.   .......+++++.+.
T Consensus       124 ~~~~~ag~~~~~~~~---~~~~~~~ad~v~~~~  153 (191)
T 3n1u_A          124 PLIQQVGLGVAVSNA---VPQVLEFADWRTERT  153 (191)
T ss_dssp             HHHHHSSEEEECTTC---CHHHHHHSSEECSSC
T ss_pred             HHHHHCCCEEEeCCc---cHHHHHhCCEEecCC
Confidence            999999998754332   344567788888773

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=99.78  E-value=3e-18  Score=129.23  Aligned_cols=166  Identities=11%  Similarity=0.097  Sum_probs=109.3

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hhh
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS-DHL   87 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   87 (260)
                      .|+|+||+||||+|+...+..++.+   .+|...+.+.+.   |.+....+       +.  ..+++.+.+   +. ...
T Consensus         4 ~~~viFD~DGtL~Ds~~~~~~~~~~---~~g~~~~~~~~~---g~~~~~~~-------~~--~~~~~~~~~---~~~~~~   65 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLGAVVKAVNE---RADLNIKMESLN---GKKLKHMI-------PE--HEGLVMDIL---KEPGFF   65 (180)
T ss_dssp             CCEEEEETBTTTBCHHHHHHHHHHH---HSCCCCCGGGCT---TCCC-----------------CHHHHHH---HSTTGG
T ss_pred             ccEEEEeCCCcccccHHHHHHHHHH---HhCCCCCHHHHc---CccHHHHC-------Cc--hHHHHHHHH---hCcchh
Confidence            4899999999999998888777765   567665544432   33222111       11  111111111   11 123


Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCC---ChHh--HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNS---HRAT--IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~---~~~~--~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      ...+++||+.++|++|++. ++++++||.   ....  ....+...++...+++.+++++..               .+ 
T Consensus        66 ~~~~~~pg~~e~L~~L~~~-~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~~~i~~~~~~---------------~l-  128 (180)
T 3bwv_A           66 RNLDVMPHAQEVVKQLNEH-YDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQHFVFCGRKN---------------II-  128 (180)
T ss_dssp             GSCCBCTTHHHHHHHHTTT-SEEEEEECC--CCSHHHHHHHHHHHHCTTSCGGGEEECSCGG---------------GB-
T ss_pred             ccCCCCcCHHHHHHHHHhc-CCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcccEEEeCCcC---------------ee-
Confidence            4578999999999999985 999999998   3222  233453446776777888877652               11 


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                         +++++|||+++++.  ..+| .+++++++++..   ..++++++++.|+...+
T Consensus       129 ---~~~l~ieDs~~~i~--~aaG-~~i~~~~~~~~~---~~~~~~i~~~~el~~~l  175 (180)
T 3bwv_A          129 ---LADYLIDDNPKQLE--IFEG-KSIMFTASHNVY---EHRFERVSGWRDVKNYF  175 (180)
T ss_dssp             ---CCSEEEESCHHHHH--HCSS-EEEEECCGGGTT---CCSSEEECSHHHHHHHH
T ss_pred             ---cccEEecCCcchHH--HhCC-CeEEeCCCcccC---CCCceecCCHHHHHHHH
Confidence               67999999999985  5689 999998754322   45778899998887654

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=99.65  E-value=1.4e-20  Score=150.43  Aligned_cols=116  Identities=16%  Similarity=0.153  Sum_probs=96.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ..+++|++.++|++|++.|++++++||.....++..+ +.+|+..+|+.++           |+.+..++++++.+++++
T Consensus       134 ~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~-~~~gl~~~f~~~~-----------p~~k~~~~~~l~~~~~~~  201 (263)
T 2yj3_A          134 SDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS-KELNIQEYYSNLS-----------PEDKVRIIEKLKQNGNKV  201 (263)
Confidence            4578999999999999999999999999999888888 8889988888775           345678899999999999


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--ccccccccccc
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEKW  219 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~~  219 (260)
                      +||||+.||+.+++.+|+...+.   .........+++++  +++.++...+.
T Consensus       202 ~~VGD~~~D~~aa~~Agv~va~g---~~~~~~~~~ad~v~~~~~l~~l~~~l~  251 (263)
T 2yj3_A          202 LMIGDGVNDAAALALADVSVAMG---NGVDISKNVADIILVSNDIGTLLGLIK  251 (263)
Confidence            99999999999999999765443   22333456788898  89999877654

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=99.77  E-value=9.2e-20  Score=147.78  Aligned_cols=119  Identities=13%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             CCCccHHHHHHHHHHC-CCcEEEEeCC---------------------ChHhHHHHHHhhcCCccccceE----------
Q 024956           91 KALPGANRLIKHLSCH-GVPMALASNS---------------------HRATIESKISYQHGWNESFSVI----------  138 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~-g~~i~i~s~~---------------------~~~~~~~~l~~~~gl~~~f~~i----------  138 (260)
                      ...+++.++++.+++. |+++.+.|+.                     ....+...+ +.+|+..+|...          
T Consensus       122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~  200 (289)
T 3gyg_A          122 FSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKIC-EEYGVSVNINRCNPLAGDPEDS  200 (289)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHHHHH-HHHTEEEEEEECCGGGTCCTTE
T ss_pred             CCHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHHHHH-HHcCCCEEEEEccccccCCCCc
Confidence            5678999999999987 9999999876                     344455566 667776666544          


Q ss_pred             EeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          139 VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       139 ~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +..+..+..++++..+..+++++|++++++++|||+.||+.|++.+|+.+++.+   .....+..+++++.+..+
T Consensus       201 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~~~~~~~---~~~~~~~~a~~v~~~~~~  272 (289)
T 3gyg_A          201 YDVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKN---ATQEAKNLHNLITDSEYS  272 (289)
T ss_dssp             EEEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEECTT---CCHHHHHHCCCBCSSCHH
T ss_pred             eEEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCcEEEECC---ccHHHHHhCCEEcCCCCc
Confidence            455666788999999999999999999999999999999999999997654433   345556677888777655

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.77  E-value=1.3e-19  Score=145.13  Aligned_cols=79  Identities=33%  Similarity=0.382  Sum_probs=67.7

Q ss_pred             ccc-cCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccccc--------ccchhccc
Q 024956          141 SDE-VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYT--------AADEVINS  210 (260)
Q Consensus       141 ~~~-~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~--------~~~~~v~~  210 (260)
                      .+. ...+||++..++.+++++|++++++++|||++ +|+.+|+.+|+.++++.++........        .|++++++
T Consensus       179 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~~Di~~~~~~g~~~~~v~~g~~~~~~~~~~~~~~~~~~d~v~~~  258 (268)
T 3qgm_A          179 REPDVVVGKPSEVIMREALDILGLDAKDVAVVGDQIDVDVAAGKAIGAETVLVLTGVTTRENLDQMIERHGLKPDYVFNS  258 (268)
T ss_dssp             CCCSEECSTTSHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHHTCEEEEESSSSCCTTTHHHHHHHHTCCCSEEESS
T ss_pred             CCcceecCCCCHHHHHHHHHHhCCCchhEEEECCCchHHHHHHHHCCCcEEEECCCCCCHHHHHhhccccCCCCCEEECC
Confidence            344 66799999999999999999999999999995 999999999999999998765544333        78999999


Q ss_pred             ccccccccc
Q 024956          211 LLDLRPEKW  219 (260)
Q Consensus       211 ~~~l~~~~~  219 (260)
                      +.+|.+++.
T Consensus       259 ~~el~~~l~  267 (268)
T 3qgm_A          259 LKDMVEALE  267 (268)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHHh
Confidence            999887653

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.76  E-value=2.3e-18  Score=130.74  Aligned_cols=100  Identities=14%  Similarity=0.172  Sum_probs=84.9

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +|++|++.|++++++||+....++..+ +.+|+..+|+         ..||++..++.++++++++|++++||||+.+|+
T Consensus        61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l-~~lgl~~~~~---------~~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di  130 (188)
T 2r8e_A           61 GIRCALTSDIEVAIITGRKAKLVEDRC-ATLGITHLYQ---------GQSNKLIAFSDLLEKLAIAPENVAYVGDDLIDW  130 (188)
T ss_dssp             HHHHHHTTTCEEEEECSSCCHHHHHHH-HHHTCCEEEC---------SCSCSHHHHHHHHHHHTCCGGGEEEEESSGGGH
T ss_pred             HHHHHHHCCCeEEEEeCCChHHHHHHH-HHcCCceeec---------CCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence            899999999999999999999888888 7788765543         258999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      .+++.+|+.+++.+.   .......+++++.+.
T Consensus       131 ~~a~~ag~~~~~~~~---~~~~~~~ad~v~~~~  160 (188)
T 2r8e_A          131 PVMEKVGLSVAVADA---HPLLIPRADYVTRIA  160 (188)
T ss_dssp             HHHTTSSEEEECTTS---CTTTGGGSSEECSSC
T ss_pred             HHHHHCCCEEEecCc---CHHHHhcCCEEEeCC
Confidence            999999998765433   334455678888876

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=99.76  E-value=1.4e-19  Score=145.96  Aligned_cols=69  Identities=20%  Similarity=0.096  Sum_probs=57.9

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +..+.+.+|+.+++.+++++|++++++++|||+.||++|++.+|+.+++-+   ..+..+..|++++.+..+
T Consensus       190 ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~n---a~~~~k~~A~~v~~~~~e  258 (279)
T 4dw8_A          190 ELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGN---AQEPVKKAADYITLTNDE  258 (279)
T ss_dssp             EEECTTCCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTT---SCHHHHHHCSEECCCGGG
T ss_pred             EEecCCCChHHHHHHHHHHcCCCHHHEEEECCChhhHHHHHHcCcEEEcCC---CcHHHHHhCCEEcCCCCC
Confidence            345667788999999999999999999999999999999999997655543   366667888998887665

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.76  E-value=2.8e-18  Score=145.48  Aligned_cols=98  Identities=15%  Similarity=0.287  Sum_probs=87.2

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCC---------h---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSH---------R---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~---------~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ++||+.++|++|+++|++++|+||..         .   ..+...+ +.+|+.  |+.+++++++...||+|..+..+++
T Consensus        88 ~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l-~~lgl~--fd~i~~~~~~~~~KP~p~~~~~a~~  164 (416)
T 3zvl_A           88 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVL-EKLGVP--FQVLVATHAGLNRKPVSGMWDHLQE  164 (416)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHH-HHHTSC--CEEEEECSSSTTSTTSSHHHHHHHH
T ss_pred             hcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHH-HHcCCC--EEEEEECCCCCCCCCCHHHHHHHHH
Confidence            78999999999999999999999966         1   2256666 778884  8999999999999999999999999


Q ss_pred             HcC----CCCCcEEEEecCH-----------------hhHHHHHHcCCeEEEEc
Q 024956          160 RLN----MEPSSSLVIEDSV-----------------IGVVAGKAAGMEVVAVP  192 (260)
Q Consensus       160 ~l~----~~~~~~~~vGD~~-----------------~Dv~~a~~~G~~~i~~~  192 (260)
                      +++    ++|++++||||+.                 .|+.+|+++|+.++...
T Consensus       165 ~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~~~d~s~~Di~~A~~aGi~f~~pe  218 (416)
T 3zvl_A          165 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPE  218 (416)
T ss_dssp             HSSTTCCCCGGGCEEECSCSCBCTTSSTTCCSCCSCCHHHHHHHHHTCCEECHH
T ss_pred             HhCCCCCCCHHHeEEEECCCCCcccccccccccCCChhhHHHHHHcCCcccCcH
Confidence            997    9999999999997                 89999999999977543

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.75  E-value=2.9e-19  Score=144.78  Aligned_cols=73  Identities=16%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc--ccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD--LRPEK  218 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~--l~~~~  218 (260)
                      ..+.+.+++.+++.+++++|++++++++|||+.||++|++.+|+.+++.+.   .+..+..|++++.+..+  +...+
T Consensus       196 i~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~na---~~~~k~~Ad~v~~s~~edGv~~~i  270 (290)
T 3dnp_A          196 IVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNA---VPEIKRKADWVTRSNDEQGVAYMM  270 (290)
T ss_dssp             EEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHHHSSEECCCTTTTHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCCEEEecCC---cHHHHHhcCEECCCCCccHHHHHH
Confidence            345677889999999999999999999999999999999999987666544   66678889999988777  44443

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=99.71  E-value=4.5e-19  Score=142.90  Aligned_cols=200  Identities=13%  Similarity=0.097  Sum_probs=97.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMF   83 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   83 (260)
                      +++|+|+||+||||+++...+...+.++++++...  ...+....|++... ...+++.+++......+   ...+....
T Consensus         3 m~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~--G~~~~iaTGR~~~~-~~~~~~~l~~~~~~~~~i~~nGai~~~~   79 (279)
T 3mpo_A            3 LTIKLIAIDIDGTLLNEKNELAQATIDAVQAAKAQ--GIKVVLCTGRPLTG-VQPYLDAMDIDGDDQYAITFNGSVAQTI   79 (279)
T ss_dssp             --CCEEEECC-----------CHHHHHHHHHHHHT--TCEEEEECSSCHHH-HHHHHHHTTCCSSSCEEEEGGGTEEEET
T ss_pred             cceEEEEEcCcCCCCCCCCcCCHHHHHHHHHHHHC--CCEEEEEcCCCHHH-HHHHHHHcCCCCCCCEEEEcCcEEEECC
Confidence            46899999999999999887777777777654210  11222234555433 34455555543100000   00000000


Q ss_pred             -Hhh-hccCCCCccHHHHHHHHHHCCCcEEEEeCC---------------------------------------------
Q 024956           84 -SDH-LCKVKALPGANRLIKHLSCHGVPMALASNS---------------------------------------------  116 (260)
Q Consensus        84 -~~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~---------------------------------------------  116 (260)
                       ... .......+.+.++++.+++.++.+.++|+.                                             
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~  159 (279)
T 3mpo_A           80 SGKVLTNHSLTYEDYIDLEAWARKVRAHFQIETPDYIYTANKDISAYTIAESYLVRMLIQYREVSETPRDLTISKAMFVD  159 (279)
T ss_dssp             TSCEEEECCCCHHHHHHHHHHHHHTTCCEEEECSSCEEECCSBCCHHHHHHHHHHTCCEEECCGGGSCTTCCCCEEEEEC
T ss_pred             CCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEECCEEEEcCCcchHHHHHHhhccCCcceecCHHHhhccCCcEEEEEcC
Confidence             000 011222345666666666666666555532                                             


Q ss_pred             ChHhHHHHHHhhcC--CccccceEEecc----ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956          117 HRATIESKISYQHG--WNESFSVIVGSD----EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       117 ~~~~~~~~l~~~~g--l~~~f~~i~~~~----~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      ........+ +.+.  +...+..+.+..    ..+.+..|+.+++.+++++|++++++++|||+.||++|++.+|+.+++
T Consensus       160 ~~~~~~~~~-~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam  238 (279)
T 3mpo_A          160 YPQVIEQVK-ANMPQDFKDRFSVVQSAPYFIEVMNRRASKGGTLSELVDQLGLTADDVMTLGDQGNDLTMIKYAGLGVAM  238 (279)
T ss_dssp             CHHHHHHHH-HHCCHHHHHHEEEECCSSSEEEEEESSCCHHHHHHHHHHHTTCCGGGEEEC--CCTTHHHHHHSTEECBC
T ss_pred             CHHHHHHHH-HHHHHHhCCCEEEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCceeec
Confidence            112222222 2211  111233333332    234455688999999999999999999999999999999999976555


Q ss_pred             EcCCCCccccccccchhcccccc
Q 024956          191 VPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       191 ~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      -+.   .+..+..|++++.+..+
T Consensus       239 ~na---~~~~k~~A~~v~~~~~e  258 (279)
T 3mpo_A          239 GNA---IDEVKEAAQAVTLTNAE  258 (279)
T ss_dssp             ------CCHHHHHCSCBC-----
T ss_pred             cCC---CHHHHHhcceeccCCCc
Confidence            544   66678888998887655

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=99.71  E-value=2.2e-18  Score=135.11  Aligned_cols=192  Identities=15%  Similarity=0.077  Sum_probs=117.0

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHc---CCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKY---GKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      |+|+|+||+||||+++...+.....++++++   |..+     ....|++... ...+.+..+++...-.........-.
T Consensus         2 m~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~v-----~i~TGR~~~~-~~~~~~~l~~~~~~i~~nGa~i~~~~   75 (231)
T 1wr8_A            2 KIKAISIDIDGTITYPNRMIHEKALEAIRRAESLGIPI-----MLVTGNTVQF-AEAASILIGTSGPVVAEDGGAISYKK   75 (231)
T ss_dssp             CCCEEEEESTTTTBCTTSCBCHHHHHHHHHHHHTTCCE-----EEECSSCHHH-HHHHHHHHTCCSCEEEGGGTEEEETT
T ss_pred             ceeEEEEECCCCCCCCCCcCCHHHHHHHHHHHHCCCEE-----EEEcCCChhH-HHHHHHHcCCCCeEEEeCCcEEEeCC
Confidence            4799999999999998655544445555433   5433     2344554433 33445555543210000000000000


Q ss_pred             hhhccCCCCccHHHHHHHHH-HC-CCcE-----------EEEe-CCChHhHHHHHHhhcCCccccceEEec----cccCC
Q 024956           85 DHLCKVKALPGANRLIKHLS-CH-GVPM-----------ALAS-NSHRATIESKISYQHGWNESFSVIVGS----DEVRT  146 (260)
Q Consensus        85 ~~~~~~~~~~~~~~~l~~l~-~~-g~~i-----------~i~s-~~~~~~~~~~l~~~~gl~~~f~~i~~~----~~~~~  146 (260)
                      +......+ +.+.++++.++ +. |+.+           .+++ +.....+...+ +.++  ..|+.+ ++    +..+.
T Consensus        76 ~~~~~~~l-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~-~~~~~~ei~~~  150 (231)
T 1wr8_A           76 KRIFLASM-DEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREII-NELN--LNLVAV-DSGFAIHVKKP  150 (231)
T ss_dssp             EEEESCCC-SHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHH-HHTT--CSCEEE-ECSSCEEEECT
T ss_pred             EEEEeccH-HHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCCHHHHHHHH-HhcC--CcEEEE-ecCcEEEEecC
Confidence            00111222 77778888877 55 5543           5555 43555566666 5544  456655 33    33467


Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ++|++..++.+++++|++++++++|||+.||+.|++.+|+.+ .+..  .....+..+++++++..+
T Consensus       151 ~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~v-~~~~--~~~~~~~~a~~v~~~~~e  214 (231)
T 1wr8_A          151 WINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKV-AVAQ--APKILKENADYVTKKEYG  214 (231)
T ss_dssp             TCCHHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSSEEE-ECTT--SCHHHHTTCSEECSSCHH
T ss_pred             CCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeE-EecC--CCHHHHhhCCEEecCCCc
Confidence            899999999999999999999999999999999999999974 3433  234445677888877654

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=99.70  E-value=1.3e-16  Score=128.02  Aligned_cols=100  Identities=9%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             CCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc------ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHH
Q 024956          107 GVPMALASNSHRATIESKISYQHGWNESFSVIVGSD------EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVA  180 (260)
Q Consensus       107 g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~------~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~  180 (260)
                      ++..++++ .......... +.++.  .|+.+.+..      ..+..++++.+++.+++++|++++++++|||+.||++|
T Consensus       156 ~~~ki~~~-~~~~~~~~~~-~~l~~--~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m  231 (274)
T 3fzq_A          156 DIHKICLW-SNEKVFDEVK-DILQD--KMELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDGQNDIVM  231 (274)
T ss_dssp             CCCEEEEE-CCHHHHHHHH-HHHGG--GEEEEEEEGGGTEEEEEETTCSHHHHHHHHHHHHTCCSTTEEEECCSGGGHHH
T ss_pred             CeEEEEEE-cCHHHHHHHH-HHhhc--ceEEEeccCCCceEEEeeCCCCHHHHHHHHHHHcCCCHHHEEEECCChhHHHH
Confidence            34344444 4444444444 44332  244444443      45678889999999999999999999999999999999


Q ss_pred             HHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          181 GKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       181 a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ++.+|+.+++-+.   .++.+..|++++++..+
T Consensus       232 ~~~ag~~vam~na---~~~~k~~A~~v~~~~~e  261 (274)
T 3fzq_A          232 FQASDVTIAMKNS---HQQLKDIATSICEDIFD  261 (274)
T ss_dssp             HHTCSEEEEETTS---CHHHHHHCSEEECCGGG
T ss_pred             HHhcCceEEecCc---cHHHHHhhhheeCCCch
Confidence            9999977665544   56667888999888765

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.69  E-value=3.6e-17  Score=121.31  Aligned_cols=98  Identities=14%  Similarity=0.028  Sum_probs=78.0

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHh--hcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHh
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISY--QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVI  176 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~--~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~  176 (260)
                      .|+.|+++|++++++|+.  ..++..+ +  .+++.     ++.+     .++++..++.++++++++|++++||||+.|
T Consensus        44 ~L~~Lk~~Gi~~~I~Tg~--~~~~~~l-~~l~lgi~-----~~~g-----~~~K~~~l~~~~~~~gi~~~~~~~vGD~~n  110 (168)
T 3ewi_A           44 GISLLKKSGIEVRLISER--ACSKQTL-SALKLDCK-----TEVS-----VSDKLATVDEWRKEMGLCWKEVAYLGNEVS  110 (168)
T ss_dssp             HHHHHHHTTCEEEEECSS--CCCHHHH-HTTCCCCC-----EECS-----CSCHHHHHHHHHHHTTCCGGGEEEECCSGG
T ss_pred             HHHHHHHCCCEEEEEeCc--HHHHHHH-HHhCCCcE-----EEEC-----CCChHHHHHHHHHHcCcChHHEEEEeCCHh
Confidence            689999999999999999  5566677 6  45543     2222     367889999999999999999999999999


Q ss_pred             hHHHHHHcCCeEEEEcCCCCccccccccchhccccc
Q 024956          177 GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLL  212 (260)
Q Consensus       177 Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~  212 (260)
                      |+.+++.+|+.+++.+.   .+..+..+++++.+-.
T Consensus       111 Di~~~~~ag~~~a~~na---~~~~k~~Ad~v~~~~~  143 (168)
T 3ewi_A          111 DEECLKRVGLSAVPADA---CSGAQKAVGYICKCSG  143 (168)
T ss_dssp             GHHHHHHSSEEEECTTC---CHHHHTTCSEECSSCT
T ss_pred             HHHHHHHCCCEEEeCCh---hHHHHHhCCEEeCCCC
Confidence            99999999998664333   4555777888777643

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=99.68  E-value=5.6e-19  Score=141.05  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc--ccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD--LRPEK  218 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~--l~~~~  218 (260)
                      .+.++|++..++.+++++|++++++++|||+.||+.|++.+|+.+++.   +.....+..+++++++..+  +...+
T Consensus       182 ~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~v~~~---n~~~~~~~~a~~v~~~~~~dGv~~~l  255 (261)
T 2rbk_A          182 TAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMG---QAKEDVKAAADYVTAPIDEDGISKAM  255 (261)
T ss_dssp             ESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECT---TSCHHHHHHSSEECCCGGGTHHHHHH
T ss_pred             cCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCceEEec---CccHHHHhhCCEEeccCchhhHHHHH
Confidence            567889999999999999999999999999999999999999866543   3344556778899988888  65544

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=99.67  E-value=2.1e-17  Score=133.45  Aligned_cols=104  Identities=8%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             HCCCcEEEEe-CCChHhHHHHHHhhcCCccccceEEecc----ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHH
Q 024956          105 CHGVPMALAS-NSHRATIESKISYQHGWNESFSVIVGSD----EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVV  179 (260)
Q Consensus       105 ~~g~~i~i~s-~~~~~~~~~~l~~~~gl~~~f~~i~~~~----~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~  179 (260)
                      +..+++.++. ..........+.+.++  ..+..+.+..    ..+.+.+|+.+++.+++++|++++++++|||+.||++
T Consensus       164 ~~~~ki~i~~~~~~~~~~~~~l~~~~~--~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~e~ia~GD~~NDi~  241 (283)
T 3dao_A          164 NDIIKFTVFHPDKCEELCTPVFIPAWN--KKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIE  241 (283)
T ss_dssp             SCCCEEEEECSSCHHHHHTTTHHHHHT--TTEEEEEETTTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHH
T ss_pred             cCceEEEEEcChHHHHHHHHHHHHHhc--CCEEEEEecCceEEEeeCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHH
Confidence            4456777773 2222211122213332  2244444433    3456777889999999999999999999999999999


Q ss_pred             HHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          180 AGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       180 ~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      |++.+|+.+++-+.   .+..+..|++++.+..+
T Consensus       242 ml~~ag~~vam~na---~~~~k~~A~~v~~s~~e  272 (283)
T 3dao_A          242 MLQNAGISYAVSNA---RQEVIAAAKHTCAPYWE  272 (283)
T ss_dssp             HHHHSSEEEEETTS---CHHHHHHSSEEECCGGG
T ss_pred             HHHhCCCEEEcCCC---CHHHHHhcCeECCCCCC
Confidence            99999987766554   56678889999887766

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=99.67  E-value=1.8e-17  Score=131.96  Aligned_cols=195  Identities=12%  Similarity=0.125  Sum_probs=112.2

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHc---CCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKY---GKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      ++|+|+||+||||+++...+.....++++++   |..+.     ...|++.... ..+.+.++...-. ...........
T Consensus         2 ~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~G~~~~-----~aTGR~~~~~-~~~~~~l~~~~~i-~~nGa~i~~~~   74 (258)
T 2pq0_A            2 GRKIVFFDIDGTLLDEQKQLPLSTIEAVRRLKQSGVYVA-----IATGRAPFMF-EHVRKQLGIDSFV-SFNGQYVVFEG   74 (258)
T ss_dssp             CCCEEEECTBTTTBCTTSCCCHHHHHHHHHHHHTTCEEE-----EECSSCGGGS-HHHHHHHTCCCEE-EGGGTEEEETT
T ss_pred             CceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCEEE-----EECCCChHHH-HHHHHhcCCCEEE-ECCCCEEEECC
Confidence            4799999999999998655555555555443   54322     2344443222 2233334332100 00000000000


Q ss_pred             hh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCCh-------HhHHHHHHhhcC-----C-------ccccceEEecc--
Q 024956           85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHR-------ATIESKISYQHG-----W-------NESFSVIVGSD--  142 (260)
Q Consensus        85 ~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~-------~~~~~~l~~~~g-----l-------~~~f~~i~~~~--  142 (260)
                      .. .......+.+.++++.+++.++.+.++++...       ......+ ...+     +       ...++.++..+  
T Consensus        75 ~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  153 (258)
T 2pq0_A           75 NVLYKQPLRREKVRALTEEAHKNGHPLVFMDAEKMRASIGDHPHIHVSM-ASLKFAHPPVDPLYYENKDIYQALLFCRAE  153 (258)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHTTCCEEEECSSCEEESSSSCHHHHHHH-HHTTCCCCCBCTTGGGGSCCCEEEECSCHH
T ss_pred             EEEEEecCCHHHHHHHHHHHHhCCCeEEEEeCCcEEEecCCcHHHHHHH-HhhcCCccccccchhhccCceEEEEECCHH
Confidence            00 11223446778888888888888777765431       1111122 1111     1       11222222111  


Q ss_pred             -----------------------ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc
Q 024956          143 -----------------------EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH  199 (260)
Q Consensus       143 -----------------------~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~  199 (260)
                                             ..+.+..|..+++.+++++|++++++++|||+.||++|++.+|+.+++-+   ..+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~ia~GDs~NDi~ml~~ag~~vam~n---a~~~  230 (258)
T 2pq0_A          154 EEEPYVRNYPEFRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGN---AHEE  230 (258)
T ss_dssp             HHHHHHHHCTTEEEEEEETTEEEEEESSCCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHHHSSEEEEETT---CCHH
T ss_pred             HHHHHHHhCCCeEEEEeCCceEEEEECCCChHHHHHHHHHHhCCCHHHEEEECCcHHhHHHHHhCCcEEEeCC---CcHH
Confidence                                   22345567789999999999999999999999999999999999877633   3556


Q ss_pred             cccccchhcccccc
Q 024956          200 RYTAADEVINSLLD  213 (260)
Q Consensus       200 ~~~~~~~~v~~~~~  213 (260)
                      .+..+++++++..+
T Consensus       231 ~k~~A~~v~~~~~~  244 (258)
T 2pq0_A          231 VKRVADFVTKPVDK  244 (258)
T ss_dssp             HHHTCSEEECCGGG
T ss_pred             HHHhCCEEeCCCCc
Confidence            67788888887765

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.61  E-value=4.2e-15  Score=117.84  Aligned_cols=98  Identities=15%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCC---hHhHHHHHHhhcCCc--cccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSH---RATIESKISYQHGWN--ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~---~~~~~~~l~~~~gl~--~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      ..+++|++.++|+.|+++|++++++||+.   ...+...+ +.+|+.  .+++.+++.+..  .||  .....++ ..+.
T Consensus        99 ~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L-~~~Gl~~v~~~~vi~~~~~~--~K~--~~~~~~~-~~~~  172 (258)
T 2i33_A           99 EAEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNL-ERVGAPQATKEHILLQDPKE--KGK--EKRRELV-SQTH  172 (258)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHH-HHHTCSSCSTTTEEEECTTC--CSS--HHHHHHH-HHHE
T ss_pred             CCCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHH-HHcCCCcCCCceEEECCCCC--CCc--HHHHHHH-HhCC
Confidence            46789999999999999999999999998   44566677 778887  677777776543  344  3444333 2332


Q ss_pred             CCCcEEEEecCHhhHHHHH-------H---------cCCeEEEEcCC
Q 024956          164 EPSSSLVIEDSVIGVVAGK-------A---------AGMEVVAVPSL  194 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~-------~---------~G~~~i~~~~~  194 (260)
                        ..++||||+.+|+.+|+       +         +|+.++.++.+
T Consensus       173 --~~~l~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~  217 (258)
T 2i33_A          173 --DIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNP  217 (258)
T ss_dssp             --EEEEEEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCC
T ss_pred             --CceEEeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCC
Confidence              34999999999999982       4         79999999874

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=99.60  E-value=6.1e-16  Score=126.15  Aligned_cols=67  Identities=15%  Similarity=0.036  Sum_probs=57.3

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+.+|+.+++.+++++|++++++++|||+.||++|++.+|+.+++-+   ..+..+..|++++++..+
T Consensus       223 ~~~~~~K~~al~~l~~~lgi~~~e~i~~GDs~NDi~m~~~ag~~vam~n---a~~~~k~~Ad~v~~~~~e  289 (304)
T 3l7y_A          223 ITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMAN---APKNVKAAANYQAKSNDE  289 (304)
T ss_dssp             EETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHCTEEEECTT---SCHHHHHHCSEECCCGGG
T ss_pred             EcCCCCHHHHHHHHHHHhCcCHHHEEEECCCHHHHHHHHhcCCeEEcCC---cCHHHHHhccEEcCCCCc
Confidence            4567778899999999999999999999999999999999997665544   366678889999988766

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.59  E-value=3.5e-16  Score=125.15  Aligned_cols=68  Identities=18%  Similarity=0.080  Sum_probs=58.0

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      ..+.+.+|+.+++.+++++|++++++++|||+.||++|++.+|+.+++-+.   .++.+..|++++.+..+
T Consensus       188 i~~~~~~K~~~l~~l~~~lgi~~~~~ia~GD~~NDi~m~~~ag~~vam~na---~~~~k~~Ad~v~~~~~e  255 (268)
T 3r4c_A          188 VNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNA---SEKVQSVADFVTDTVDN  255 (268)
T ss_dssp             EEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHHTCSEECCCTTT
T ss_pred             EeeCCCCHHHHHHHHHHHcCCCHHHEEEECCcHHhHHHHHhCCCeEEeCCC---cHHHHHhcCEeeCCCCc
Confidence            345677888999999999999999999999999999999999987665544   66677888998887765

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=99.58  E-value=2.6e-16  Score=127.14  Aligned_cols=67  Identities=19%  Similarity=0.147  Sum_probs=54.5

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch--hcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE--VINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~v~~~~~  213 (260)
                      .+.+.+|+.+++.+++.+|++++++++|||+.||++|++.+|+.+++-|.   .++.+..+++  ++.+..+
T Consensus       204 ~~~~~~K~~al~~l~~~lgi~~~~~ia~GD~~NDi~ml~~ag~~vAm~Na---~~~vk~~A~~~~v~~sn~e  272 (285)
T 3pgv_A          204 MAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANA---HQRLKDLHPELEVIGSNAD  272 (285)
T ss_dssp             EETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHHHCTTSEECCCGGG
T ss_pred             ecCCCChHHHHHHHHHHhCCCHHHEEEECCcHhhHHHHHhcCCEEEccCC---CHHHHHhCCCCEecccCCc
Confidence            45677788999999999999999999999999999999999976665554   6666777764  5555544

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=99.57  E-value=2.3e-16  Score=126.52  Aligned_cols=103  Identities=14%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             HCCCcEEEEeCCChHhHHHHHHhhcC--CccccceEEec----cccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956          105 CHGVPMALASNSHRATIESKISYQHG--WNESFSVIVGS----DEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus       105 ~~g~~i~i~s~~~~~~~~~~l~~~~g--l~~~f~~i~~~----~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      +.++++.++++...  ....+ +.++  +...|+.+.++    +....+++++.+++.+++++|++++++++|||+.||+
T Consensus       144 ~~~~ki~i~~~~~~--~~~~~-~~l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~i~~~~~~~~GD~~nD~  220 (271)
T 1rlm_A          144 DVLFKFSLNLPDEQ--IPLVI-DKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDA  220 (271)
T ss_dssp             SCEEEEEEECCGGG--HHHHH-HHHHHHTTTSSEEEECSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             CceEEEEEEcCHHH--HHHHH-HHHHHHcCCcEEEEeccCCeEEEEcCCCChHHHHHHHHHHhCCCHHHEEEECCcHHHH
Confidence            44566777765432  33233 2222  33456666555    3456788999999999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .|++.+|+.+++.   +..+..+..+++++.+..+
T Consensus       221 ~m~~~ag~~va~~---na~~~~k~~a~~v~~~~~~  252 (271)
T 1rlm_A          221 EMLKMARYSFAMG---NAAENIKQIARYATDDNNH  252 (271)
T ss_dssp             HHHHHCSEEEECT---TCCHHHHHHCSEECCCGGG
T ss_pred             HHHHHcCCeEEeC---CccHHHHHhCCeeCcCCCC
Confidence            9999999965532   2344556778888887655

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=99.55  E-value=3.3e-15  Score=116.63  Aligned_cols=66  Identities=14%  Similarity=0.010  Sum_probs=52.3

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +.+.+|+..++.++++++++++++++|||+.||++|++.+|+..+ +.  +.....+..+++++.+..+
T Consensus       149 ~~~~~K~~~l~~l~~~~~~~~~~~~~iGD~~nD~~m~~~ag~~va-~~--n~~~~~k~~a~~v~~~~~~  214 (227)
T 1l6r_A          149 NRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKAC-PA--NATDNIKAVSDFVSDYSYG  214 (227)
T ss_dssp             ETTCSHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHTSSSEEEE-CT--TSCHHHHHHCSEECSCCTT
T ss_pred             cCCCCHHHHHHHHHHHhCcCHHHEEEECCcHHhHHHHHHcCceEE-ec--CchHHHHHhCCEEecCCCC
Confidence            445678899999999999999999999999999999999998644 32  2244455677887776544

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.49  E-value=1.5e-13  Score=111.80  Aligned_cols=100  Identities=16%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhh--------cCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQ--------HGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~--------~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      .++||+.++|+.|+++|++++++||.....   +...+ +.        +|+  .|+.+++.++. ..||+|+.+..+++
T Consensus       188 ~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l-~~~~~~~~~~~~~--~~~~~~~~~~~-~~kp~p~~~~~~~~  263 (301)
T 1ltq_A          188 VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYY-RMTRKWVEDIAGV--PLVMQCQREQG-DTRKDDVVKEEIFW  263 (301)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHH-HHHHHHHHHTTCC--CCSEEEECCTT-CCSCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHH-HhcccccccccCC--CchheeeccCC-CCcHHHHHHHHHHH
Confidence            458999999999999999999999998543   34455 55        788  48888877654 46899999999999


Q ss_pred             HcCCCCCc-EEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          160 RLNMEPSS-SLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       160 ~l~~~~~~-~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +++.++.+ ++||||+.+|+.+|+++|+.++.+.+|
T Consensus       264 ~~~~~~~~~~~~vgD~~~di~~a~~aG~~~~~v~~G  299 (301)
T 1ltq_A          264 KHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASG  299 (301)
T ss_dssp             HHTTTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred             HHhccccceEEEeCCcHHHHHHHHHcCCeEEEecCC
Confidence            99877655 799999999999999999999999885

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=99.48  E-value=4.4e-16  Score=128.63  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=60.7

Q ss_pred             cCCCCCChHHHHHHHHHc----------------------C-----CCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCC
Q 024956          144 VRTGKPSPDIFLEAAKRL----------------------N-----MEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLP  195 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l----------------------~-----~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~  195 (260)
                      ...+||++..|+.+++.+                      +     .++++++||||++ +|+.+|+++|+.++++.++.
T Consensus       242 ~~~GKP~~~~y~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~A~~aG~~ti~V~~G~  321 (352)
T 3kc2_A          242 YTLGKPTKLTYDFAHHVLIDWEKRLSGKIGQSVKQKLPLLGTKPSTSPFHAVFMVGDNPASDIIGAQNYGWNSCLVKTGV  321 (352)
T ss_dssp             EECSTTCHHHHHHHHHHHHHHHHHHHC--------------CCTTTTTSSEEEEEESCTTTHHHHHHHHTCEEEECSSSS
T ss_pred             eEecCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccccCCCcceEEEEecCcHHHHHHHHHcCCEEEEEccCC
Confidence            347999999999876654                      2     2679999999999 69999999999999999865


Q ss_pred             Cccc---cccccchhcccccccccccc
Q 024956          196 KQTH---RYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       196 ~~~~---~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ....   ....|+++++++.++..++.
T Consensus       322 ~~~~~~~~~~~pd~vi~~l~el~~~il  348 (352)
T 3kc2_A          322 YNEGDDLKECKPTLIVNDVFDAVTKTL  348 (352)
T ss_dssp             CCTTCCCTTCCCSEECSSHHHHHHHHH
T ss_pred             CCcccccccCCCCEEECCHHHHHHHHH
Confidence            4332   24678999999999877653

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=99.45  E-value=1.9e-15  Score=124.74  Aligned_cols=112  Identities=18%  Similarity=0.138  Sum_probs=73.8

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc--------------------CCCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV--------------------RTGKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~--------------------~~~kp  149 (260)
                      ..+.+++.++++.|++ |+++.++|+.....+.... ...++.   +.+.+....                    ...++
T Consensus       102 ~~~~~~~~~~l~~l~~-g~~~~i~t~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~  176 (332)
T 1y8a_A          102 AKFVPDAEKAMATLQE-RWTPVVISTSYTQYLRRTA-SMIGVR---GELHGTEVDFDSIAVPEGLREELLSIIDVIASLS  176 (332)
T ss_dssp             CCBCTTHHHHHHHHHT-TCEEEEEEEEEHHHHHHHH-HHTTCC---SEEEEEBCCGGGCCCCHHHHHHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHHHHc-CCcEEEEECCceEEEcccc-hhhhhh---hhhcccccchhhhccccccceeEEecCHHHHhhh
Confidence            4678999999999999 9999999988766665555 444542   222211000                    00011


Q ss_pred             C---------------hHHHH------------HHHHHcCCCCCc----EEEEecCHhhHHHHHHc----CCeEEEEcCC
Q 024956          150 S---------------PDIFL------------EAAKRLNMEPSS----SLVIEDSVIGVVAGKAA----GMEVVAVPSL  194 (260)
Q Consensus       150 ~---------------~~~~~------------~~l~~l~~~~~~----~~~vGD~~~Dv~~a~~~----G~~~i~~~~~  194 (260)
                      .               +..+.            ..++  ++++++    +++|||+.||++|++.+    |+.+++ +. 
T Consensus       177 ~~~~l~~~~~~~~~s~~~~~~e~ii~~~g~~K~~al~--gi~~~~~~~~via~GDs~NDi~ml~~A~~~~g~~vam-na-  252 (332)
T 1y8a_A          177 GEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMR--GYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAF-NG-  252 (332)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHHTCBCCCHHHHHHHHH--HHHHHHTCSSCEEEECSGGGHHHHHHHHHTTCEEEEE-SC-
T ss_pred             hHHHHHHHHHHHhhcCCCceeeEEecCCCCCHHHHHh--ccChhhcCceEEEEeCcHhHHHHHHHHhhcCCeEEEe-cC-
Confidence            0               11121            1222  667788    99999999999999999    998776 54 


Q ss_pred             CCccccccccchhccccc
Q 024956          195 PKQTHRYTAADEVINSLL  212 (260)
Q Consensus       195 ~~~~~~~~~~~~~v~~~~  212 (260)
                        .+..+..|++++.+..
T Consensus       253 --~~~lk~~Ad~v~~~~~  268 (332)
T 1y8a_A          253 --NEYALKHADVVIISPT  268 (332)
T ss_dssp             --CHHHHTTCSEEEECSS
T ss_pred             --CHHHHhhCcEEecCCC
Confidence              4555677888887643

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=99.45  E-value=7e-15  Score=118.94  Aligned_cols=65  Identities=22%  Similarity=0.162  Sum_probs=51.2

Q ss_pred             CCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          146 TGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+|+.+++.+++.+|++++++++|||+.||+.|++.+|+. +.+..  .....+..+++++.+..+
T Consensus       213 ~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~-va~~~--~~~~~~~~a~~v~~~~~~  277 (288)
T 1nrw_A          213 RKASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGKG-VAMGN--AREDIKSIADAVTLTNDE  277 (288)
T ss_dssp             TTCSHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSSEE-EECTT--CCHHHHHHCSEECCCGGG
T ss_pred             CCCChHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHcCcE-EEEcC--CCHHHHhhCceeecCCCc
Confidence            444677889999999999999999999999999999999994 44433  234455667777776654

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=99.42  E-value=7.3e-15  Score=118.48  Aligned_cols=67  Identities=19%  Similarity=0.133  Sum_probs=53.3

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+-+|+.+++.+++.++++++++++|||+.||+.|++.+|+.++ +.  +.....+..+++++++..+
T Consensus       193 ~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va-~~--n~~~~~~~~a~~v~~~~~~  259 (282)
T 1rkq_A          193 LDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVA-VD--NAIPSVKEVANFVTKSNLE  259 (282)
T ss_dssp             EETTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEE-CT--TSCHHHHHHCSEECCCTTT
T ss_pred             cCCCCCCHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHCCcEEE-ec--CCcHHHHhhCCEEecCCCc
Confidence            3456678899999999999999999999999999999999998533 32  2244456678888877554

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=99.37  E-value=1.1e-13  Score=110.71  Aligned_cols=67  Identities=18%  Similarity=0.096  Sum_probs=53.8

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+.+|+.+++.+++.++++++++++|||+.||+.|++.+|+.+++.   +.....+..+++++.+..+
T Consensus       185 ~~~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ag~~v~~~---n~~~~~~~~a~~v~~~~~~  251 (268)
T 1nf2_A          185 VPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAME---NAIEKVKEASDIVTLTNND  251 (268)
T ss_dssp             ECTTCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSEEEECT---TSCHHHHHHCSEECCCTTT
T ss_pred             eCCCCChHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHHcCCEEEec---CCCHHHHhhCCEEEccCCc
Confidence            455677889999999999999999999999999999999999865433   3344455668888877554

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=99.34  E-value=2.3e-14  Score=114.14  Aligned_cols=51  Identities=8%  Similarity=-0.046  Sum_probs=44.9

Q ss_pred             cccCCCCCChHHHHHHHHHcCCCC--CcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          142 DEVRTGKPSPDIFLEAAKRLNMEP--SSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       142 ~~~~~~kp~~~~~~~~l~~l~~~~--~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +..+. ++|+.+++.+++++++++  +++++|||+.||+.|++.+|+.+++-|.
T Consensus       170 ei~~~-~~K~~~l~~l~~~~~i~~~~~~~~~~GD~~nD~~m~~~ag~~va~~na  222 (259)
T 3zx4_A          170 HAAKG-ADKGRAVARLRALWPDPEEARFAVGLGDSLNDLPLFRAVDLAVYVGRG  222 (259)
T ss_dssp             EEESS-CCHHHHHHHHHHTCSSHHHHTSEEEEESSGGGHHHHHTSSEEEECSSS
T ss_pred             EEcCC-CCHHHHHHHHHHHhCCCCCCceEEEEeCCHHHHHHHHhCCCeEEeCCh
Confidence            33455 788999999999999999  9999999999999999999988666655

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=99.33  E-value=6.4e-14  Score=113.96  Aligned_cols=66  Identities=15%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc-cccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN-SLLD  213 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~-~~~~  213 (260)
                      +.+-+++.+++.+++.+|++++++++|||+.||+.|++.+|+.++ +..  .....+..+++++. +..+
T Consensus       220 ~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va-~~n--a~~~~k~~a~~v~~~~~~~  286 (301)
T 2b30_A          220 KLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFA-VAN--ATDSAKSHAKCVLPVSHRE  286 (301)
T ss_dssp             ETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSEEEE-CTT--CCHHHHHHSSEECSSCTTT
T ss_pred             CCCCCcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEE-EcC--CcHHHHhhCCEEEccCCCC
Confidence            456678899999999999999999999999999999999998644 322  23445567777777 6543

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=99.26  E-value=2.7e-11  Score=95.00  Aligned_cols=85  Identities=14%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChH----hHHHHHHhhcCCccccc-eEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRA----TIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~----~~~~~l~~~~gl~~~f~-~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      ..+++||+.++|+.|++.|++++++|+++..    .....| +.+|+..+++ .++....    ++.....+..+...+.
T Consensus        99 ~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L-~~lGi~~~~~~~Lilr~~----~~~K~~~r~~L~~~gy  173 (260)
T 3pct_A           99 QSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDM-KRLGFTGVNDKTLLLKKD----KSNKSVRFKQVEDMGY  173 (260)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHH-HHHTCCCCSTTTEEEESS----CSSSHHHHHHHHTTTC
T ss_pred             CCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH-HHcCcCccccceeEecCC----CCChHHHHHHHHhcCC
Confidence            5789999999999999999999999998654    677788 7889987664 3443322    2333555555555443


Q ss_pred             CCCcEEEEecCHhhHHH
Q 024956          164 EPSSSLVIEDSVIGVVA  180 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~  180 (260)
                        .-+++|||+.+|+.+
T Consensus       174 --~iv~~iGD~~~Dl~~  188 (260)
T 3pct_A          174 --DIVLFVGDNLNDFGD  188 (260)
T ss_dssp             --EEEEEEESSGGGGCG
T ss_pred             --CEEEEECCChHHcCc
Confidence              349999999999997

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=99.26  E-value=7.1e-11  Score=92.77  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=62.9

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCCh----HhHHHHHHhhcCCccccc-eEEeccccCCCCCChHHHHHHHHHcC
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHR----ATIESKISYQHGWNESFS-VIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~----~~~~~~l~~~~gl~~~f~-~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      ...+++||+.++|+.|++.|++++++|+++.    ......| +.+|+..+++ .++....   ...+...+.. +...|
T Consensus        98 ~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L-~~lGi~~~~~~~Lilr~~---~~~K~~~r~~-l~~~G  172 (262)
T 3ocu_A           98 RQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDM-KRLGFNGVEESAFYLKKD---KSAKAARFAE-IEKQG  172 (262)
T ss_dssp             TCCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHH-HHHTCSCCSGGGEEEESS---CSCCHHHHHH-HHHTT
T ss_pred             CCCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHH-HHcCcCcccccceeccCC---CCChHHHHHH-HHhcC
Confidence            3578999999999999999999999999865    4677788 8889987663 4443322   1223344444 44444


Q ss_pred             CCCCcEEEEecCHhhHHH
Q 024956          163 MEPSSSLVIEDSVIGVVA  180 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~  180 (260)
                      ..  -+++|||+.+|+.+
T Consensus       173 y~--iv~~vGD~~~Dl~~  188 (262)
T 3ocu_A          173 YE--IVLYVGDNLDDFGN  188 (262)
T ss_dssp             EE--EEEEEESSGGGGCS
T ss_pred             CC--EEEEECCChHHhcc
Confidence            33  49999999999997

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=99.24  E-value=3.5e-10  Score=96.60  Aligned_cols=99  Identities=20%  Similarity=0.221  Sum_probs=80.7

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcC-------------CccccceEEeccccCCCCCChH----
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG-------------WNESFSVIVGSDEVRTGKPSPD----  152 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~g-------------l~~~f~~i~~~~~~~~~kp~~~----  152 (260)
                      +...|.+..+|.+|++.| ++.++||+....+...+...+|             |..+||.++...    .||..-    
T Consensus       245 v~kdp~l~~~L~~Lr~~G-KlfLiTNS~~~yv~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~A----~KP~FF~~~~  319 (555)
T 2jc9_A          245 VVKDGKLPLLLSRMKEVG-KVFLATNSDYKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDA----RKPLFFGEGT  319 (555)
T ss_dssp             BCCCTHHHHHHHHHHHHS-EEEEECSSCHHHHHHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEESC----CTTGGGTTCC
T ss_pred             cCCChHHHHHHHHHHHcC-CEEEEeCCChHHHHHHHHHhcCCCccccccccccchhhhCCEEEEeC----CCCCcccCCC
Confidence            566789999999999999 9999999999998888733335             567899866532    222211    


Q ss_pred             -------------------------H-----HHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956          153 -------------------------I-----FLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS  193 (260)
Q Consensus       153 -------------------------~-----~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~  193 (260)
                                               .     +..+++.+|+.+++++||||.. .||..++ ..|+.+++|..
T Consensus       320 pfr~Vd~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~llg~~g~eVLYVGDhIftDIl~~kk~~GWrTiLViP  392 (555)
T 2jc9_A          320 VLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLVIP  392 (555)
T ss_dssp             CEEEEETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHHCCEEEEECT
T ss_pred             cceEeecCCCccccccccccccCCceeccCCHHHHHHHhCCCCCeEEEECCEehHhHHhHHhhcCeEEEEEEe
Confidence                                     1     5889999999999999999999 8999997 99999999976

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=99.13  E-value=6.7e-11  Score=93.44  Aligned_cols=67  Identities=6%  Similarity=-0.154  Sum_probs=53.6

Q ss_pred             cCCCCCChHHHHHHHHHcCC-CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNM-EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~-~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+ +..|+.+++.+++.+++ +++++++|||+.||++|++.+|+.+++-+.  .....+..+++++++..+
T Consensus       175 ~~-g~sKg~al~~l~~~~~~~~~~~viafGD~~NDi~Ml~~ag~~va~gna--~~~~~~~~a~~v~~~~~~  242 (249)
T 2zos_A          175 HG-NSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGSL--KHKKAQNVSSIIDVLEVI  242 (249)
T ss_dssp             EC-SCCHHHHHHHHHHHHHTTSCEEEEEEECSGGGHHHHTTSSEEEEESSC--CCTTEEEESSHHHHHHHH
T ss_pred             eC-CCChHHHHHHHHHHhccCCCceEEEECCCcccHHHHHhCCcEEEeCCC--CccccchhceEEeccccc
Confidence            44 56778999999999998 999999999999999999999997555443  114455678888877655

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.12  E-value=3.3e-12  Score=96.80  Aligned_cols=98  Identities=11%  Similarity=0.088  Sum_probs=86.8

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      .+..+||+.++|+++++. ++++|+|++....++..+ +.++...+|+.+++.+++...|   ..+.+.++.+|.++++|
T Consensus        66 ~v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~a~~vl-~~ld~~~~f~~~l~rd~~~~~k---~~~lK~L~~Lg~~~~~~  140 (195)
T 2hhl_A           66 YVLKRPHVDEFLQRMGQL-FECVLFTASLAKYADPVA-DLLDRWGVFRARLFRESCVFHR---GNYVKDLSRLGRELSKV  140 (195)
T ss_dssp             EEEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHH-HHHCCSSCEEEEECGGGCEEET---TEEECCGGGSSSCGGGE
T ss_pred             EEEeCcCHHHHHHHHHcC-CeEEEEcCCCHHHHHHHH-HHhCCcccEEEEEEcccceecC---CceeeeHhHhCCChhHE
Confidence            356789999999999998 999999999999999999 8899999999999888776554   45777889999999999


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEE
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ++|||++.++.++..+|+....+
T Consensus       141 vivDDs~~~~~~~~~ngi~i~~~  163 (195)
T 2hhl_A          141 IIVDNSPASYIFHPENAVPVQSW  163 (195)
T ss_dssp             EEEESCGGGGTTCGGGEEECCCC
T ss_pred             EEEECCHHHhhhCccCccEEeee
Confidence            99999999999999999875443

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=99.09  E-value=1.1e-10  Score=91.84  Aligned_cols=67  Identities=18%  Similarity=0.053  Sum_probs=51.7

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccc-------cchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTA-------ADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~-------~~~~v~~~~~  213 (260)
                      .+.+-+|+..++.+++.++++++++++|||+.||+.|++.+|+..++   ++.....+..       +++++++..+
T Consensus       157 ~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~~g~~va~---~na~~~~k~~a~~~~~~a~~v~~~~~~  230 (244)
T 1s2o_A          157 LPQRSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGVIV---RNAQPELLHWYDQWGDSRHYRAQSSHA  230 (244)
T ss_dssp             EETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHTSSSEEEEC---TTCCHHHHHHHHHHCCTTEEECSSCHH
T ss_pred             ccCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHhccCcEEEE---cCCcHHHHHHHhcccccceeecCCcch
Confidence            45667888999999999999999999999999999999999986443   2234444443       6677766543

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=99.06  E-value=8.1e-09  Score=86.27  Aligned_cols=102  Identities=13%  Similarity=0.059  Sum_probs=66.3

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEecc------------ccC-CCCCChHHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSD------------EVR-TGKPSPDIFL  155 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~------------~~~-~~kp~~~~~~  155 (260)
                      +++|++.++++.|+++|++++|+|++....++... +.+|+..-+  +.+++..            ..+ ..........
T Consensus       221 r~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia-~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~gK~  299 (385)
T 4gxt_A          221 RTLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFA-TDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREGKV  299 (385)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHHHH
T ss_pred             eeCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHH-HHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCchH
Confidence            47999999999999999999999999999999888 766642211  2232211            000 0112223333


Q ss_pred             HHHHHc---CCCCCcEEEEecCHhhHHHHHHcCC-e-EEEEcC
Q 024956          156 EAAKRL---NMEPSSSLVIEDSVIGVVAGKAAGM-E-VVAVPS  193 (260)
Q Consensus       156 ~~l~~l---~~~~~~~~~vGD~~~Dv~~a~~~G~-~-~i~~~~  193 (260)
                      ..++++   ......++++|||.+|+.|++..+- . .+.+++
T Consensus       300 ~~i~~~~~~~~~~~~i~a~GDs~~D~~ML~~~~~~~~~liinr  342 (385)
T 4gxt_A          300 QTINKLIKNDRNYGPIMVGGDSDGDFAMLKEFDHTDLSLIIHR  342 (385)
T ss_dssp             HHHHHHTCCTTEECCSEEEECSGGGHHHHHHCTTCSEEEEECC
T ss_pred             HHHHHHHHhcCCCCcEEEEECCHhHHHHHhcCccCceEEEEcC
Confidence            333332   2445679999999999999997443 2 344554

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.01  E-value=2e-11  Score=91.51  Aligned_cols=95  Identities=12%  Similarity=0.090  Sum_probs=84.1

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      .+..+||+.++|+++++. ++++|+|++...+++..+ +.++...+|+.+++.+++...|   ..+.+.++.+|.++++|
T Consensus        53 ~v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~a~~vl-~~ld~~~~f~~~~~rd~~~~~k---~~~~k~L~~Lg~~~~~~  127 (181)
T 2ght_A           53 YVLKRPHVDEFLQRMGEL-FECVLFTASLAKYADPVA-DLLDKWGAFRARLFRESCVFHR---GNYVKDLSRLGRDLRRV  127 (181)
T ss_dssp             EEEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHH-HHHCTTCCEEEEECGGGSEEET---TEEECCGGGTCSCGGGE
T ss_pred             EEEeCCCHHHHHHHHHhC-CCEEEEcCCCHHHHHHHH-HHHCCCCcEEEEEeccCceecC---CcEeccHHHhCCCcceE
Confidence            367899999999999998 999999999999999999 8889988999999887765433   34677888999999999


Q ss_pred             EEEecCHhhHHHHHHcCCeE
Q 024956          169 LVIEDSVIGVVAGKAAGMEV  188 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~  188 (260)
                      ++|||++.++.++..+|+..
T Consensus       128 vivdDs~~~~~~~~~ngi~i  147 (181)
T 2ght_A          128 LILDNSPASYVFHPDNAVPV  147 (181)
T ss_dssp             EEECSCGGGGTTCTTSBCCC
T ss_pred             EEEeCCHHHhccCcCCEeEe
Confidence            99999999999999999874

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=99.00  E-value=1.3e-09  Score=88.34  Aligned_cols=96  Identities=19%  Similarity=0.131  Sum_probs=65.0

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc----c------------cCCCCCChH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----E------------VRTGKPSPD  152 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~----~------------~~~~kp~~~  152 (260)
                      ..++.|++.++++.|+++|++++++|++....++..+ +.+|+...-..+++..    +            ....|+.+.
T Consensus       139 ~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~-~~~g~~~~~~~i~~n~l~~~~~~~~~~~~~~~i~~~~k~~~~  217 (297)
T 4fe3_A          139 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVI-RQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGA  217 (297)
T ss_dssp             CCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHHHHHHH-HHTTCCCTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHH
T ss_pred             CCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHHHHHHH-HHcCCCcccceEEeeeEEEcccceeEeccccccchhhcccHH
Confidence            4789999999999999999999999999999998888 7788754322232211    0            011222111


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcC
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG  185 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G  185 (260)
                      .-......+.-..++++|+||+.||+.|++.+.
T Consensus       218 ~k~~~~~~~~~~~~~v~~vGDGiNDa~m~k~l~  250 (297)
T 4fe3_A          218 LKNTDYFSQLKDNSNIILLGDSQGDLRMADGVA  250 (297)
T ss_dssp             HTCHHHHHHTTTCCEEEEEESSGGGGGTTTTCS
T ss_pred             HHHHHHHHhhccCCEEEEEeCcHHHHHHHhCcc
Confidence            111222333335578999999999999987543

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=98.95  E-value=4.2e-11  Score=96.04  Aligned_cols=70  Identities=7%  Similarity=-0.114  Sum_probs=42.7

Q ss_pred             cCCCCCChHHHHHHHHHcC-CCCCc--EEEEecCHhhHHHHHHcCCeEEEEcCCCCcccccc--ccc-hhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLN-MEPSS--SLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYT--AAD-EVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~-~~~~~--~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~--~~~-~~v~~~~~  213 (260)
                      .+.+.+|+.+++.+++.++ +++++  +++|||+.||+.|++.+|+..++-+........+.  .++ +++.+..+
T Consensus       184 ~~~~~~K~~~l~~l~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~~n~~~~~~~~~~~~~a~~~v~~~~~~  259 (275)
T 1xvi_A          184 LDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGP  259 (275)
T ss_dssp             EETTCCHHHHHHHHHHHHHHHHSSCCEEEEEESSGGGHHHHHTSSEEEECCCCC----------------------
T ss_pred             ecCCCCHHHHHHHHHHHhhhcccccCcEEEECCChhhHHHHHhCCceEEecCCCccchhhccccCCceeEccCCCc
Confidence            3456778899999999999 99999  99999999999999999986443333111133332  256 67665443

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=98.77  E-value=8.3e-07  Score=75.06  Aligned_cols=104  Identities=15%  Similarity=0.134  Sum_probs=78.5

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--------CCccccceEEeccc-----------------c
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------V  144 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--------gl~~~f~~i~~~~~-----------------~  144 (260)
                      +...|.+..+|++|++.|.++.++||++..++...+.-.+        .|.++||.|+....                 .
T Consensus       185 i~k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~M~y~~~~~~~~g~dWrdlFDvVIv~A~KP~FF~~~~~~~~v~~~~  264 (470)
T 4g63_A          185 VIREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPEN  264 (470)
T ss_dssp             EECCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHTGGGSCTTCCGGGGCSEEEESCCTTHHHHSCCCEEEECTTT
T ss_pred             hhCCHhHHHHHHHHHHcCCeEEEeeCCCchHHHHHHHhhcccCCCCCCChhhhcCEEEECCCCCCcccCCCcceEEECCC
Confidence            4456889999999999999999999999999876663333        57889999887421                 0


Q ss_pred             C-------CCCCC---hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHH-cCCeEEEEcC
Q 024956          145 R-------TGKPS---PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKA-AGMEVVAVPS  193 (260)
Q Consensus       145 ~-------~~kp~---~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~-~G~~~i~~~~  193 (260)
                      +       ..++.   ..-...+.+.+|....+|+||||+. .||...+. .|+.++++-.
T Consensus       265 g~l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~Ii~  325 (470)
T 4g63_A          265 GTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVE  325 (470)
T ss_dssp             CCEEECCSSCCSEEEEECCHHHHHHHTTCCGGGEEEEESCCCSCHHHHHHSCCCEEEEECT
T ss_pred             CcccccccccCCceeecCcHHHHHHHhCCCCCeEEEECCchHHHHHhhhhccCCeEEEEhH
Confidence            0       00010   1224667788899989999999999 89877764 7999999976

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=98.77  E-value=1.4e-10  Score=92.26  Aligned_cols=65  Identities=5%  Similarity=-0.177  Sum_probs=49.7

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+-.|..+++.+   ++++++++++|||    +.||++|.+.+|...+.+  ++..+..+..+++++++..+
T Consensus       192 ~~~~vsKg~al~~l---~gi~~~~viafGDs~~~~~NDi~Ml~~~~~~g~av--~NA~~~~k~~a~~v~~~~~~  260 (262)
T 2fue_A          192 FPEGWDKRYCLDSL---DQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSV--VSPQDTVQRCREIFFPETAH  260 (262)
T ss_dssp             EETTCSTTHHHHHH---TTSCCSEEEEEESCCSTTSTTHHHHHSTTSEEEEC--SSHHHHHHHHHHHHCTTC--
T ss_pred             ecCCCCHHHHHHHH---HCCCHHHEEEECCCCCCCCCCHHHHhcCccCcEEe--cCCCHHHHHhhheeCCCCcC
Confidence            34566677888888   8999999999999    999999999999755555  33455567778888776543

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.76  E-value=1.2e-08  Score=90.94  Aligned_cols=113  Identities=12%  Similarity=0.141  Sum_probs=83.1

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.|++.+.+++|++.|++++++|+......+... +.+|+..++..+     .  +..|    ..+++.+... ++++
T Consensus       456 D~l~~~~~~~i~~L~~~Gi~v~~~TGd~~~~a~~ia-~~lgi~~~~~~~-----~--P~~K----~~~v~~l~~~-~~v~  522 (645)
T 3j08_A          456 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-RELNLDLVIAEV-----L--PHQK----SEEVKKLQAK-EVVA  522 (645)
T ss_dssp             CCCTTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCSEEECSC-----C--TTCH----HHHHHHHTTT-CCEE
T ss_pred             CCchhHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH-HHcCCCEEEEeC-----C--HHhH----HHHHHHHhhC-CeEE
Confidence            467899999999999999999999999999888887 888886433222     1  2233    3444444444 8899


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~  218 (260)
                      ||||+.||+.|++.+++...+-+   ..+..++.+++++  +++.++...+
T Consensus       523 ~vGDg~ND~~al~~A~vgiamg~---g~~~a~~~AD~vl~~~~~~~i~~~i  570 (645)
T 3j08_A          523 FVGDGINDAPALAQADLGIAVGS---GSDVAVESGDIVLIRDDLRDVVAAI  570 (645)
T ss_dssp             EEECSSSCHHHHHHSSEEEEECC---CSCCSSCCSSSEESSCCTTHHHHHH
T ss_pred             EEeCCHhHHHHHHhCCEEEEeCC---CcHHHHHhCCEEEecCCHHHHHHHH
Confidence            99999999999999997655443   2445567788887  5666665443

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=98.71  E-value=1.2e-06  Score=71.51  Aligned_cols=36  Identities=17%  Similarity=0.310  Sum_probs=33.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKI  125 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l  125 (260)
                      ..++|++.++++.|+++|++++|+|++....++...
T Consensus       142 ~~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a  177 (327)
T 4as2_A          142 PRVFSGQRELYNKLMENGIEVYVISAAHEELVRMVA  177 (327)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            367899999999999999999999999999998777

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.64  E-value=3.5e-08  Score=89.12  Aligned_cols=113  Identities=12%  Similarity=0.141  Sum_probs=82.1

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.|++.+.+++|++.|++++++|+.......... +.+|+..++..+     .  +..|    ..+++.+.-. ++++
T Consensus       534 D~~~~~~~~~i~~l~~~Gi~v~~~TGd~~~~a~~ia-~~lgi~~~~~~~-----~--P~~K----~~~v~~l~~~-~~v~  600 (723)
T 3j09_A          534 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-RELNLDLVIAEV-----L--PHQK----SEEVKKLQAK-EVVA  600 (723)
T ss_dssp             CCSCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCSEEECSC-----C--TTCH----HHHHHHHTTT-CCEE
T ss_pred             CCcchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHH-HHcCCcEEEccC-----C--HHHH----HHHHHHHhcC-CeEE
Confidence            468899999999999999999999999999888777 888875332221     1  2233    3444444434 8899


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--cccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPEK  218 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~~  218 (260)
                      ||||+.||+.|.+.+++...+-   ...+..++.+|+++  +++..+...+
T Consensus       601 ~vGDg~ND~~al~~A~vgiamg---~g~~~a~~~AD~vl~~~~~~~i~~~i  648 (723)
T 3j09_A          601 FVGDGINDAPALAQADLGIAVG---SGSDVAVESGDIVLIRDDLRDVVAAI  648 (723)
T ss_dssp             EEECSSTTHHHHHHSSEEEECC---CCSCCSSCCSSEECSSCCTTHHHHHH
T ss_pred             EEECChhhHHHHhhCCEEEEeC---CCcHHHHHhCCEEEeCCCHHHHHHHH
Confidence            9999999999999999654433   33455567788887  5666655443

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=98.57  E-value=5.3e-08  Score=87.73  Aligned_cols=113  Identities=13%  Similarity=0.084  Sum_probs=83.4

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      -++.|++.+.+++|++.|++++++|+.......... +.+|+..++..+           .|+-...+++.+.-..+.++
T Consensus       553 D~i~~~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia-~~lgi~~v~a~~-----------~P~~K~~~v~~l~~~g~~V~  620 (736)
T 3rfu_A          553 DPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVA-GTLGIKKVVAEI-----------MPEDKSRIVSELKDKGLIVA  620 (736)
T ss_dssp             CCBCSSHHHHHHHHHHHTCEEEEECSSCHHHHHHHH-HHHTCCCEECSC-----------CHHHHHHHHHHHHHHSCCEE
T ss_pred             ccchhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCCEEEEec-----------CHHHHHHHHHHHHhcCCEEE
Confidence            467899999999999999999999999999888877 888886432211           23445555555554567899


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc--ccccccccc
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI--NSLLDLRPE  217 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v--~~~~~l~~~  217 (260)
                      ||||+.||+.|.+.+++...+-+.   .+..++.++.++  +++..+...
T Consensus       621 ~vGDG~ND~paL~~AdvGIAmg~g---~d~a~~~AD~vl~~~~~~~i~~a  667 (736)
T 3rfu_A          621 MAGDGVNDAPALAKADIGIAMGTG---TDVAIESAGVTLLHGDLRGIAKA  667 (736)
T ss_dssp             EEECSSTTHHHHHHSSEEEEESSS---CSHHHHHCSEEECSCCSTTHHHH
T ss_pred             EEECChHhHHHHHhCCEEEEeCCc---cHHHHHhCCEEEccCCHHHHHHH
Confidence            999999999999999986555432   444467777777  445554433

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=98.54  E-value=1.4e-08  Score=83.93  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=64.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccc-eEEeccccCCCCCChHHHHHHHHHc-CCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFS-VIVGSDEVRTGKPSPDIFLEAAKRL-NMEP  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~-~i~~~~~~~~~kp~~~~~~~~l~~l-~~~~  165 (260)
                      .+...||+.++|+++. ..+.++|+|++...++...+ +.++... +|+ .+++.+.++.      .+.+-++.+ +.++
T Consensus        73 ~v~~RPg~~eFL~~l~-~~yeivI~Tas~~~yA~~vl-~~LDp~~~~f~~ri~sr~~~g~------~~~KdL~~L~~~dl  144 (372)
T 3ef0_A           73 YIKFRPGLAQFLQKIS-ELYELHIYTMGTKAYAKEVA-KIIDPTGKLFQDRVLSRDDSGS------LAQKSLRRLFPCDT  144 (372)
T ss_dssp             EEEECTTHHHHHHHHH-TTEEEEEECSSCHHHHHHHH-HHHCTTSCSSSSCEECTTTSSC------SSCCCGGGTCSSCC
T ss_pred             EEEECcCHHHHHHHHh-cCcEEEEEeCCcHHHHHHHH-HHhccCCceeeeEEEEecCCCC------cceecHHHhcCCCC
Confidence            4778999999999999 55999999999999999999 8888776 787 5666665442      122345555 8899


Q ss_pred             CcEEEEecCHhhH
Q 024956          166 SSSLVIEDSVIGV  178 (260)
Q Consensus       166 ~~~~~vGD~~~Dv  178 (260)
                      +++++|+|++.-.
T Consensus       145 ~~viiiDd~~~~~  157 (372)
T 3ef0_A          145 SMVVVIDDRGDVW  157 (372)
T ss_dssp             TTEEEEESCSGGG
T ss_pred             ceEEEEeCCHHHc
Confidence            9999999999543

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=98.49  E-value=8e-09  Score=78.23  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=73.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc-cccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      +...||+.++|+++. +++.++|+|++...++...+ +.++.. .+|+..+..+.+....   ..+.+.++.+|.++++|
T Consensus        58 v~~RPgl~eFL~~l~-~~yeivI~Tas~~~ya~~vl-~~LDp~~~~f~~rl~R~~c~~~~---g~y~KdL~~Lgrdl~~v  132 (204)
T 3qle_A           58 TAKRPGADYFLGYLS-QYYEIVLFSSNYMMYSDKIA-EKLDPIHAFVSYNLFKEHCVYKD---GVHIKDLSKLNRDLSKV  132 (204)
T ss_dssp             EEECTTHHHHHHHHT-TTEEEEEECSSCHHHHHHHH-HHTSTTCSSEEEEECGGGSEEET---TEEECCGGGSCSCGGGE
T ss_pred             EEeCCCHHHHHHHHH-hCCEEEEEcCCcHHHHHHHH-HHhCCCCCeEEEEEEecceeEEC---CeeeecHHHhCCChHHE
Confidence            568899999999998 56999999999999999999 888776 4788877765543211   12456678889999999


Q ss_pred             EEEecCHhhHHHHHHcCCe
Q 024956          169 LVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~  187 (260)
                      ++|+|+++-..+....|+.
T Consensus       133 IiIDDsp~~~~~~p~N~I~  151 (204)
T 3qle_A          133 IIIDTDPNSYKLQPENAIP  151 (204)
T ss_dssp             EEEESCTTTTTTCGGGEEE
T ss_pred             EEEECCHHHHhhCccCceE
Confidence            9999999887665555554

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=98.46  E-value=1.1e-07  Score=88.89  Aligned_cols=123  Identities=13%  Similarity=0.043  Sum_probs=81.5

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccc----eEEeccccCC----------------CCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFS----VIVGSDEVRT----------------GKP  149 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~----~i~~~~~~~~----------------~kp  149 (260)
                      -++.|++.+++++|++.|++++++|+.......... +..|+....+    .++.++....                ..-
T Consensus       602 D~lr~~~~~~I~~l~~~Gi~v~miTGD~~~ta~~ia-~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v~~r~  680 (995)
T 3ar4_A          602 DPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAIC-RRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARV  680 (995)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCEEESC
T ss_pred             CCCchhHHHHHHHHHHcCCEEEEECCCCHHHHHHHH-HHcCcCCCCCcccceEEEchhhhhCCHHHHHHHHhhCcEEEEe
Confidence            467899999999999999999999999999888777 7888864321    2222211110                011


Q ss_pred             ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc--ccccccc
Q 024956          150 SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN--SLLDLRP  216 (260)
Q Consensus       150 ~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~--~~~~l~~  216 (260)
                      .|+-...+++.+.-..+.++|+||+.||+.|.+.+++...+- .  ..+..+..+++++.  ++..+..
T Consensus       681 ~P~~K~~~v~~l~~~g~~v~~~GDG~ND~~alk~Advgiamg-~--g~~~ak~aAd~vl~~~~~~~i~~  746 (995)
T 3ar4_A          681 EPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMG-S--GTAVAKTASEMVLADDNFSTIVA  746 (995)
T ss_dssp             CSSHHHHHHHHHHTTTCCEEEEECSGGGHHHHHHSTEEEEET-T--SCHHHHHTCSEEETTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHCCeEEEeC-C--CCHHHHHhCCEEECCCCHHHHHH
Confidence            123344444444434578999999999999999999876653 2  12233556676663  3554443

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=98.22  E-value=2.3e-06  Score=80.22  Aligned_cols=116  Identities=16%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc------------------------cceEEeccc---
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES------------------------FSVIVGSDE---  143 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~------------------------f~~i~~~~~---  143 (260)
                      ++.|++.+.+++|++.|++++++|+.....+.... +.+|+...                        ...++.++.   
T Consensus       599 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ia-~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~vi~G~~l~~  677 (1028)
T 2zxe_A          599 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIA-KGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKD  677 (1028)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTSSCTTCCCHHHHHHHTTCCGGGSCGGGCCEEEEEHHHHTT
T ss_pred             CCChhHHHHHHHHHHcCCEEEEECCCCHHHHHHHH-HHcCCCCCCchhHHHHHhhcCcchhhccccccceEEEEcHHhhh
Confidence            56799999999999999999999999998888777 77777521                        011221110   


Q ss_pred             ---------------cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          144 ---------------VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       144 ---------------~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                                     .......|+....+.+.+.-..+.++|+||+.||+.|.+.+++...+-..+  .+..+..+++++
T Consensus       678 ~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~V~~iGDG~ND~paLk~AdvGIAmg~~g--td~ak~aAD~Vl  755 (1028)
T 2zxe_A          678 LSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISG--SDVSKQAADMIL  755 (1028)
T ss_dssp             CCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSSEEEEESSSC--CHHHHHHCSEEE
T ss_pred             CCHHHHHHHHhhCCcEEEEEcCHHHHHHHHHHHHhCCCEEEEEcCCcchHHHHHhCCceEEeCCcc--CHHHHHhcCEEe
Confidence                           011223344444444443323367999999999999999999877654221  233345566655


Q ss_pred             c
Q 024956          209 N  209 (260)
Q Consensus       209 ~  209 (260)
                      .
T Consensus       756 ~  756 (1028)
T 2zxe_A          756 L  756 (1028)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=98.15  E-value=2.4e-06  Score=80.25  Aligned_cols=117  Identities=15%  Similarity=0.081  Sum_probs=76.6

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc------------------------ceEEecccc-
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF------------------------SVIVGSDEV-  144 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f------------------------~~i~~~~~~-  144 (260)
                      -++.|++.+.+++|+++|++++++|+.....+.... +..|+...-                        ..++.+... 
T Consensus       603 Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia-~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  681 (1034)
T 3ixz_A          603 DPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIA-ASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLK  681 (1034)
T ss_pred             CCCchhHHHHHHHHHHcCCeEEEEeCCCHHHHHHHH-HHcCCCCCCchHHHHHHHhhCccchhccccccceeEEecHhhh
Confidence            367899999999999999999999999998888777 777763210                        011111100 


Q ss_pred             -----------------CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEE-cCCCCccccccccch
Q 024956          145 -----------------RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV-PSLPKQTHRYTAADE  206 (260)
Q Consensus       145 -----------------~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~-~~~~~~~~~~~~~~~  206 (260)
                                       -.....|+....+.+.+.-....++++||+.||+.|.+.+|+...+- +.   .+..+..+++
T Consensus       682 ~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq~~g~~V~a~GDG~ND~~mLk~A~vGIAMg~ng---~d~aK~aAD~  758 (1034)
T 3ixz_A          682 DMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAG---SDAAKNAADM  758 (1034)
T ss_pred             hCCHHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHcCCEEEEECCcHHhHHHHHHCCeeEEeCCcc---CHHHHHhcCE
Confidence                             01112233334444443333456999999999999999999876664 32   3444566676


Q ss_pred             hccc
Q 024956          207 VINS  210 (260)
Q Consensus       207 ~v~~  210 (260)
                      ++.+
T Consensus       759 Vl~~  762 (1034)
T 3ixz_A          759 ILLD  762 (1034)
T ss_pred             Eecc
Confidence            6654

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=98.10  E-value=4.3e-06  Score=59.41  Aligned_cols=40  Identities=18%  Similarity=0.051  Sum_probs=30.2

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWN  132 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~  132 (260)
                      +.|++.++|++++++|+.++++|+++..   .+...+ +..|+.
T Consensus        25 ~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l-~~~gi~   67 (142)
T 2obb_A           25 EIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWC-RARGLE   67 (142)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHH-HTTTCC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHH-HHcCCC
Confidence            4568899999999999999999999743   334444 555653

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=97.99  E-value=7.5e-06  Score=75.47  Aligned_cols=114  Identities=13%  Similarity=0.069  Sum_probs=73.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-c--e-EEecc------c--------cCCCCCChH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-S--V-IVGSD------E--------VRTGKPSPD  152 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~--~-i~~~~------~--------~~~~kp~~~  152 (260)
                      ++.|++.+.+++|++.|++++++|+.......... +..|+.... +  . +++++      .        .....-.|+
T Consensus       535 p~R~ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA-~~lGI~~~~~~~~~~~~~g~~~~~~~el~~~~~~~~V~arv~P~  613 (920)
T 1mhs_A          535 PPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETS-RQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFAEVFPQ  613 (920)
T ss_dssp             CCCHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHH-HHHTSSCSCCCSSSSSSCBCCCGGGGGGGTTTTTTSCEESCCST
T ss_pred             cccccHHHHHHHHhhcCceEEEEcCCCHHHHHHHH-HHcCCCccccCccceeecCcccCCHHHHHHHHhhCeEEEEeCHH
Confidence            57899999999999999999999999999888777 788885311 0  0 00000      0        001112223


Q ss_pred             HHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          153 IFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       153 ~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      -...+++.+.-.-+.++|+||+.||..|.+.+++...+- .+  .+..++.++.++
T Consensus       614 ~K~~iV~~Lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg-~g--td~ak~aADiVl  666 (920)
T 1mhs_A          614 HKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVE-GS--SDAARSAADIVF  666 (920)
T ss_dssp             HHHHHHHHHHTTTCCCEECCCCGGGHHHHHHSSEEEEET-TS--CHHHHHSSSEEE
T ss_pred             HHHHHHHHHHhCCCeEEEEcCCcccHHHHHhCCcCcccc-cc--cHHHHHhcCeEE
Confidence            333444333323468999999999999999999876664 21  222344555544

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=97.90  E-value=1.3e-05  Score=62.79  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=15.2

Q ss_pred             cccEEEEecCCccccCH
Q 024956            8 LMSCVILDLDGTLLNTD   24 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~   24 (260)
                      ++|+|+||+||||++..
T Consensus         3 ~~kli~~DlDGTLl~~~   19 (246)
T 3f9r_A            3 KRVLLLFDVDGTLTPPR   19 (246)
T ss_dssp             CSEEEEECSBTTTBSTT
T ss_pred             CceEEEEeCcCCcCCCC
Confidence            58999999999999864

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=97.88  E-value=5.9e-06  Score=76.04  Aligned_cols=115  Identities=16%  Similarity=0.089  Sum_probs=74.1

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc-c-ceEEeccc-----------------cCCCCCCh
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES-F-SVIVGSDE-----------------VRTGKPSP  151 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~-f-~~i~~~~~-----------------~~~~kp~~  151 (260)
                      ++.|++.+.+++|++.|++++++|+.......... +..|+..- + +..+.+.+                 .....-.|
T Consensus       488 p~R~~a~~aI~~l~~aGI~v~MiTGD~~~tA~~iA-~~lGi~~~~~~~~~l~g~~~~~~~~~~~l~~~~~~~~v~arv~P  566 (885)
T 3b8c_A          488 PPRHDSAETIRRALNLGVNVKMITGDQLAIGKETG-RRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFP  566 (885)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCEEEESSCHHHHTHHH-HTTTCTTCCSTTSSCCBGGGGTTSCCSCHHHHHHTSCCEECCCH
T ss_pred             ccchhHHHHHHHHHHcCCcEEEEcCCChHHHHHHH-HHhCCccccCCcceeeccccccccchhHHHHHHhhCcEEEEECH
Confidence            56789999999999999999999999998887777 77887421 1 01111000                 01122234


Q ss_pred             HHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956          152 DIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN  209 (260)
Q Consensus       152 ~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~  209 (260)
                      +-...+++.+.-..+.++|+||+.||..+.+.+++...+-+   ..+..++.++.++.
T Consensus       567 ~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdvGIAmg~---gtd~ak~aADivl~  621 (885)
T 3b8c_A          567 EHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVAD---ATDAARGASDIVLT  621 (885)
T ss_dssp             HHHHHHHHHHHHTTCCCCBCCCSSTTHHHHHHSSSCCCCSS---SHHHHGGGCSSCCS
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCchhHHHHHhCCEeEEeCC---ccHHHHHhcceeec
Confidence            44444444433234679999999999999999998755532   12233445555543

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=97.87  E-value=7.1e-06  Score=57.34  Aligned_cols=29  Identities=3%  Similarity=0.047  Sum_probs=24.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRA  119 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~  119 (260)
                      .+.+++.+++++++++|++++++|++...
T Consensus        24 ~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~   52 (126)
T 1xpj_A           24 LPRLDVIEQLREYHQLGFEIVISTARNMR   52 (126)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTT
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCChh
Confidence            45567889999999999999999998754

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=97.82  E-value=1.3e-06  Score=70.76  Aligned_cols=95  Identities=12%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc--ceEEecccc---C-CCCCChHHHHHHHHHc---
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEV---R-TGKPSPDIFLEAAKRL---  161 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f--~~i~~~~~~---~-~~kp~~~~~~~~l~~l---  161 (260)
                      ...|++.++|+++.+. +.++|+|++...++...+ +.++....+  ...+..+.+   . ..+..+..+.+-|+.+   
T Consensus       164 ~~RP~l~eFL~~l~~~-yeivIfTas~~~ya~~vl-d~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~  241 (320)
T 3shq_A          164 LMRPYLHEFLTSAYED-YDIVIWSATSMRWIEEKM-RLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWAL  241 (320)
T ss_dssp             HBCTTHHHHHHHHHHH-EEEEEECSSCHHHHHHHH-HHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHHHHHH
T ss_pred             EeCCCHHHHHHHHHhC-CEEEEEcCCcHHHHHHHH-HHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEEhHHhhcc
Confidence            4689999999999966 999999999999999999 777665442  221211111   1 0111111233445555   


Q ss_pred             --CCCCCcEEEEecCHhhHHHHHHcCCe
Q 024956          162 --NMEPSSSLVIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       162 --~~~~~~~~~vGD~~~Dv~~a~~~G~~  187 (260)
                        |.+++++++|+|++.-..+....|+.
T Consensus       242 ~p~rdl~~tIiIDdsp~~~~~~p~NgI~  269 (320)
T 3shq_A          242 YKQYNSSNTIMFDDIRRNFLMNPKSGLK  269 (320)
T ss_dssp             CTTCCGGGEEEEESCGGGGTTSGGGEEE
T ss_pred             cCCCChhHEEEEeCChHHhccCcCceEE
Confidence              78999999999999877776666653

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=97.21  E-value=0.00026  Score=55.08  Aligned_cols=55  Identities=11%  Similarity=0.018  Sum_probs=44.4

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc--CCeEEEEcCCCCccccccccchhccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA--GMEVVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~--G~~~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                      .+..-.|..+++.+++.++     +++|||+.||+.|.+.+  |...++-|.       +..+++++.+
T Consensus       155 ~~~~~~Kg~al~~l~~~~g-----via~GD~~ND~~Ml~~a~~g~~vam~Na-------~~~A~~v~~~  211 (239)
T 1u02_A          155 RVPGVNKGSAIRSVRGERP-----AIIAGDDATDEAAFEANDDALTIKVGEG-------ETHAKFHVAD  211 (239)
T ss_dssp             ECTTCCHHHHHHHHHTTSC-----EEEEESSHHHHHHHHTTTTSEEEEESSS-------CCCCSEEESS
T ss_pred             EcCCCCHHHHHHHHHhhCC-----eEEEeCCCccHHHHHHhhCCcEEEECCC-------CCcceEEeCC
Confidence            3456678899999999998     99999999999999999  987777655       2446666665

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=97.03  E-value=0.0005  Score=53.42  Aligned_cols=33  Identities=18%  Similarity=0.096  Sum_probs=27.2

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRATIESKI  125 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l  125 (260)
                      +.+...+.|++|+++| +++++|+++...+...+
T Consensus        24 i~~~~~~al~~l~~~g-~v~iaTGR~~~~~~~~~   56 (239)
T 1u02_A           24 ADAGLLSLISDLKERF-DTYIVTGRSPEEISRFL   56 (239)
T ss_dssp             CCHHHHHHHHHHHHHS-EEEEECSSCHHHHHHHS
T ss_pred             CCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHh
Confidence            3455678999999999 99999999988777665

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=96.82  E-value=0.00046  Score=53.81  Aligned_cols=59  Identities=8%  Similarity=-0.136  Sum_probs=40.7

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcCCCCccccccccchh
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEV  207 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~  207 (260)
                      ...+-.|..+++.+   +|++++++++|||    +.||++|.+.+|...+.+..  ..+..+..++++
T Consensus       183 ~~~~~~Kg~al~~l---~~i~~~~viafGD~~~~~~ND~~Ml~~a~~ag~av~N--a~~~vk~~A~~v  245 (246)
T 2amy_A          183 FPDGWDKRYCLRHV---ENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTA--PEDTRRICELLF  245 (246)
T ss_dssp             EETTCSGGGGGGGT---TTSCCSEEEEEECSCC---CCCHHHHCTTEEEEECSS--HHHHHHHHHHHC
T ss_pred             ecCCCchHHHHHHH---hCCCHHHEEEECCCCCCCCCcHHHHHhCCcceEEeeC--CCHHHHHHHhhc
Confidence            34555667788777   8999999999999    99999999999874444432  244445555443

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=96.45  E-value=0.00018  Score=56.20  Aligned_cols=47  Identities=19%  Similarity=0.215  Sum_probs=31.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPL   56 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   56 (260)
                      +++|+|+||+||||++....+.+...++++++...   ..+.-..|++..
T Consensus         4 ~~~kli~~DlDGTLl~~~~~i~~~~~~al~~l~~~---i~v~iaTGR~~~   50 (246)
T 2amy_A            4 PGPALCLFDVDGTLTAPRQKITKEMDDFLQKLRQK---IKIGVVGGSDFE   50 (246)
T ss_dssp             CCSEEEEEESBTTTBCTTSCCCHHHHHHHHHHTTT---SEEEEECSSCHH
T ss_pred             CCceEEEEECCCCcCCCCcccCHHHHHHHHHHHhC---CeEEEEcCCCHH
Confidence            46899999999999988655555566666665422   233345566543

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=96.12  E-value=0.0029  Score=53.19  Aligned_cols=80  Identities=15%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc-ccce-EEeccccCCCCCChHHHHHHHHH-cCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE-SFSV-IVGSDEVRTGKPSPDIFLEAAKR-LNMEP  165 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~-~f~~-i~~~~~~~~~kp~~~~~~~~l~~-l~~~~  165 (260)
                      .+...|++.++|+++.+. +.++|+|.+...++...+ +.+.... +|.. +++.+.++..      +.+-|++ ++.+.
T Consensus        81 ~V~~RPgl~eFL~~ls~~-yEivIfTas~~~YA~~Vl-~~LDp~~~~f~~Rl~sRd~cg~~------~~KdL~~ll~rdl  152 (442)
T 3ef1_A           81 YIKFRPGLAQFLQKISEL-YELHIYTMGTKAYAKEVA-KIIDPTGKLFQDRVLSRDDSGSL------AQKSLRRLFPCDT  152 (442)
T ss_dssp             EEEECTTHHHHHHHHTTT-EEEEEECSSCHHHHHHHH-HHHCTTSTTTTTCEECTTTSSCS------SCCCGGGTCSSCC
T ss_pred             EEEeCCCHHHHHHHHhCC-cEEEEEcCCCHHHHHHHH-HHhccCCccccceEEEecCCCCc------eeeehHHhcCCCc
Confidence            467889999999999954 999999999999999999 7777665 6765 6656655421      1122443 48899


Q ss_pred             CcEEEEecCHh
Q 024956          166 SSSLVIEDSVI  176 (260)
Q Consensus       166 ~~~~~vGD~~~  176 (260)
                      +.+++|+|++.
T Consensus       153 ~~vvIIDd~p~  163 (442)
T 3ef1_A          153 SMVVVIDDRGD  163 (442)
T ss_dssp             TTEEEEESCSG
T ss_pred             ceEEEEECCHH
Confidence            99999999995

>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A

Probab=96.04  E-value=0.076  Score=40.71  Aligned_cols=92  Identities=14%  Similarity=0.182  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHC-CCcEEEEeCCChHhHHHHHHhhcCCccccc--eEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEe
Q 024956           96 ANRLIKHLSCH-GVPMALASNSHRATIESKISYQHGWNESFS--VIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE  172 (260)
Q Consensus        96 ~~~~l~~l~~~-g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~--~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vG  172 (260)
                      +...|....++ +.--++||++.-...-.++ -.+++..+|.  .|+++-.++    |...|+++.+++| +.-.-++||
T Consensus       164 a~k~L~~i~sr~~~vNVLVTs~qLVPaLaK~-LLygL~~~fpieNIYSa~kiG----KesCFerI~~RFG-~k~~yvvIG  237 (274)
T 3geb_A          164 SLKALNLINSRPNCVNVLVTTTQLIPALAKV-LLYGLGSVFPIENIYSATKTG----KESCFERIMQRFG-RKAVYVVIG  237 (274)
T ss_dssp             HHHHHHHHHHSTTEEEEEEESSCHHHHHHHH-HHTTCTTTSCGGGEEETTTTC----HHHHHHHHHHHHC-TTSEEEEEE
T ss_pred             HHHHHHhhccCCceeEEEEecCchHHHHHHH-HHhhcccceecccccchhhcC----HHHHHHHHHHHhC-CCceEEEEC
Confidence            34455555544 3455777877665555555 5678888774  588876554    4599999999997 456788899


Q ss_pred             cCHhhHHHHHHcCCeEEEEcC
Q 024956          173 DSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       173 D~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      |+...-++|+..++++.-++.
T Consensus       238 DG~eEe~AAk~~n~PFwrI~~  258 (274)
T 3geb_A          238 DGVEEEQGAKKHNMPFWRISC  258 (274)
T ss_dssp             SSHHHHHHHHHTTCCEEECCS
T ss_pred             CCHHHHHHHHHcCCCeEEeec
Confidence            999999999999999988876

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=95.83  E-value=0.029  Score=46.04  Aligned_cols=87  Identities=20%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .+.|++.++++.|++.|++++++||+..   ......+.+.+|+.-..+.++++.....         ..++    ..+.
T Consensus        29 ~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~~~~~~~~l~~~lgi~~~~~~i~ts~~~~~---------~~~~----~~~~   95 (352)
T 3kc2_A           29 KPIAGASDALKLLNRNKIPYILLTNGGGFSERARTEFISSKLDVDVSPLQIIQSHTPYK---------SLVN----KYSR   95 (352)
T ss_dssp             EECTTHHHHHHHHHHTTCCEEEECSCCSSCHHHHHHHHHHHHTSCCCGGGEECTTGGGG---------GGTT----TCSE
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCCCCCchHHHHHHHHhcCCCCChhhEeehHHHHH---------HHHh----cCCE
Confidence            5679999999999999999999999863   3344455236888766678887643211         0111    2356


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEE
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAV  191 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~  191 (260)
                      ++++|-. .-.+.++.+|+..+.-
T Consensus        96 v~viG~~-~l~~~l~~~G~~~v~~  118 (352)
T 3kc2_A           96 ILAVGTP-SVRGVAEGYGFQDVVH  118 (352)
T ss_dssp             EEEESST-THHHHHHHHTCSEEEE
T ss_pred             EEEECCH-HHHHHHHhCCCeEecc
Confidence            7788865 6678889999987753

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=94.78  E-value=0.13  Score=40.02  Aligned_cols=83  Identities=28%  Similarity=0.330  Sum_probs=56.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      .|++.+.+++++++|++++++||+......   ..+ +.+|+....+.++++.         ......+++.. +...+.
T Consensus        19 ~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l-~~lg~~~~~~~i~~~~---------~~~~~~l~~~~-~~~~v~   87 (263)
T 1zjj_A           19 IPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKL-LKMGIDVSSSIIITSG---------LATRLYMSKHL-DPGKIF   87 (263)
T ss_dssp             CTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHH-HTTTCCCCGGGEEEHH---------HHHHHHHHHHS-CCCCEE
T ss_pred             CccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHCCCCCChhhEEecH---------HHHHHHHHHhC-CCCEEE
Confidence            367889999999999999999998764433   344 4467765556666642         23344444432 346788


Q ss_pred             EEecCHhhHHHHHHcCCe
Q 024956          170 VIEDSVIGVVAGKAAGME  187 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~  187 (260)
                      ++|+. .....++..|+.
T Consensus        88 viG~~-~l~~~l~~~G~~  104 (263)
T 1zjj_A           88 VIGGE-GLVKEMQALGWG  104 (263)
T ss_dssp             EESCH-HHHHHHHHHTSC
T ss_pred             EEcCH-HHHHHHHHcCCe
Confidence            88874 666777777874

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=93.98  E-value=0.11  Score=40.83  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeC---CChHhHHHHHHhhcCCc-cccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           92 ALPGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWN-ESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~---~~~~~~~~~l~~~~gl~-~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      +.|++.+.|++++++|++++++||   .........+ +.+|+. ..++.++++.         ......+++ +.+ .+
T Consensus        31 ~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l-~~lg~~~~~~~~ii~~~---------~~~~~~l~~-~~~-~~   98 (284)
T 2hx1_A           31 LLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSY-HKLGLFSITADKIISSG---------MITKEYIDL-KVD-GG   98 (284)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHH-HHTTCTTCCGGGEEEHH---------HHHHHHHHH-HCC-SE
T ss_pred             eChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHH-HHCCcCCCCHhhEEcHH---------HHHHHHHHh-hcC-Cc
Confidence            457888999999999999999998   4455566677 777887 6667777653         223333333 122 26


Q ss_pred             EE-EEecCHhhHHHHHHcCCeE
Q 024956          168 SL-VIEDSVIGVVAGKAAGMEV  188 (260)
Q Consensus       168 ~~-~vGD~~~Dv~~a~~~G~~~  188 (260)
                      ++ .+|.. .....++..|+..
T Consensus        99 v~~~lg~~-~l~~~l~~~G~~~  119 (284)
T 2hx1_A           99 IVAYLGTA-NSANYLVSDGIKM  119 (284)
T ss_dssp             EEEEESCH-HHHHTTCBTTEEE
T ss_pred             EEEEecCH-HHHHHHHHCCCee
Confidence            77 78875 5556666777643

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=93.97  E-value=0.01  Score=46.14  Aligned_cols=45  Identities=9%  Similarity=-0.168  Sum_probs=35.5

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecC----HhhHHHHHHcCCeEEEEcC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDS----VIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~----~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.+-.|..+++.+++    +++++++|||+    .||++|.+.+|...+.+..
T Consensus       183 ~~gv~Kg~al~~L~~----~~~ev~afGD~~~~g~NDi~Ml~~a~~~g~~v~n  231 (246)
T 3f9r_A          183 PVGWDKTYCLQFVED----DFEEIHFFGDKTQEGGNDYEIYTDKRTIGHKVTS  231 (246)
T ss_dssp             ETTCSGGGGGGGTTT----TCSEEEEEESCCSTTSTTHHHHTCTTSEEEECSS
T ss_pred             eCCCCHHHHHHHHHc----CcccEEEEeCCCCCCCCCHHHHhCCCccEEEeCC
Confidence            445566678888877    88999999996    9999999988865555543

>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}

Probab=93.87  E-value=0.017  Score=47.17  Aligned_cols=25  Identities=56%  Similarity=1.113  Sum_probs=23.8

Q ss_pred             CCccccccccccccCCccccCCCCC
Q 024956          235 EPWYIGGPVVKGLGRGSKVLGIPTG  259 (260)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~  259 (260)
                      +|+.+.|.+..|+||||+.+|.|||
T Consensus       185 rpy~i~G~Vv~G~~~Gsr~lGfPTA  209 (338)
T 2x0k_A          185 RHFYVTGPVVRGAGRGGKELGFPTA  209 (338)
T ss_dssp             SCCEEEEECBCCSSCSSSCTTSCSE
T ss_pred             eeeEEEEEEecCcccccceeccccc
Confidence            6788999999999999999999997

>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A

Probab=91.73  E-value=0.1  Score=41.59  Aligned_cols=79  Identities=22%  Similarity=0.221  Sum_probs=36.8

Q ss_pred             cEEEEecCHh-------hHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccC--CCCCcccccCCCCCCCc
Q 024956          167 SSLVIEDSVI-------GVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWG--LPPFQDWIEGTLPSEPW  237 (260)
Q Consensus       167 ~~~~vGD~~~-------Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~--l~~~~~~~~~~~~~~~~  237 (260)
                      ..+++|+...       |+...+..|+.++.+..-. .      ....++| +.+.+.+..  +....+     .--+|+
T Consensus        94 ~~iVvG~Df~fG~~~~g~~~~L~~~G~~V~~v~~~~-~------~~~~iSS-T~IR~~L~~G~i~~a~~-----lLGr~y  160 (293)
T 1mrz_A           94 SAVVVGRDFRFGKNASGNASFLRKKGVEVYEIEDVV-V------QGKRVSS-SLIRNLVQEGRVEEIPA-----YLGRYF  160 (293)
T ss_dssp             CEEEEETTCCBSGGGCBCHHHHHHTTCEEEEECCCE-E------TTEECCH-HHHHHHHHTTCTTTTHH-----HHSSCC
T ss_pred             CEEEECCCCCCCCCCCCCHHHHHhCCCEEEEECCEE-e------CCccccH-hHHHHHHhcCcHHHHhh-----hcCCCe
Confidence            4788888663       7778877888888776410 0      0111222 123332221  000011     112678


Q ss_pred             cccccccccccCCccccCCCCC
Q 024956          238 YIGGPVVKGLGRGSKVLGIPTG  259 (260)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~  259 (260)
                      .+.|.+..|.|||.+ +|.|||
T Consensus       161 ~i~G~Vv~G~~~Gr~-lGfPTa  181 (293)
T 1mrz_A          161 EIEGIVHKDREFGRK-LGFPTA  181 (293)
T ss_dssp             EEEEEC------------CCCE
T ss_pred             EEEEEEccCccccce-ecccce
Confidence            899999999999975 999997

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=91.69  E-value=0.22  Score=38.70  Aligned_cols=49  Identities=18%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeC---CChHhHHHHHHhhcCCccccceEEec
Q 024956           92 ALPGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~---~~~~~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      ..|++.++|++++++|++++++||   .....+...+ +.+|+....+.++++
T Consensus        25 ~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l-~~lg~~~~~~~ii~~   76 (268)
T 3qgm_A           25 PIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERL-RSFGLEVGEDEILVA   76 (268)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHH-HHTTCCCCGGGEEEH
T ss_pred             eCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHH-HHCCCCCCHHHeeCH
Confidence            456788999999999999999999   4555566677 777876555666654

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=90.37  E-value=2.2  Score=32.85  Aligned_cols=47  Identities=19%  Similarity=0.408  Sum_probs=35.5

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeC---CChHhHHHHHHhhcCCccccceEEec
Q 024956           94 PGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~---~~~~~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      |++.++|++++++|++++++||   .....+...+ +.+|+....+.++++
T Consensus        24 ~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l-~~lg~~~~~~~ii~~   73 (264)
T 3epr_A           24 PAGERFIERLQEKGIPYMLVTNNTTRTPESVQEML-RGFNVETPLETIYTA   73 (264)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHH-HTTTCCCCGGGEEEH
T ss_pred             cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHCCCCCChhheecH
Confidence            6888999999999999999995   4455566667 677876555556553

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=89.69  E-value=0.5  Score=36.59  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeC---CChHhHHHHHHhhcCCccccceEEe
Q 024956           94 PGANRLIKHLSCHGVPMALASN---SHRATIESKISYQHGWNESFSVIVG  140 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~---~~~~~~~~~l~~~~gl~~~f~~i~~  140 (260)
                      |++.++|++++++|++++++||   .....+...+ +.+|+....+.+++
T Consensus        25 ~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l-~~lg~~~~~~~ii~   73 (266)
T 3pdw_A           25 EEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKL-VSFDIPATEEQVFT   73 (266)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHH-HHTTCCCCGGGEEE
T ss_pred             ccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHH-HHcCCCCCHHHccC
Confidence            4567899999999999999998   4555566666 67777644455554

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=89.26  E-value=6.4  Score=30.49  Aligned_cols=91  Identities=10%  Similarity=0.162  Sum_probs=61.7

Q ss_pred             CccHHHHHHHHH---HCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-ccccC--CCCCChHHHHHHHHHcCCCCC
Q 024956           93 LPGANRLIKHLS---CHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVR--TGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        93 ~~~~~~~l~~l~---~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-~~~~~--~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .|+..++++..+   +.|+.+..++..+....++ + ...|..    .+.- +...+  .+-.+++.++.+.+..+++  
T Consensus       118 lpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akr-l-~~~G~~----aVmPlg~pIGsG~Gi~~~~lI~~I~e~~~vP--  189 (265)
T 1wv2_A          118 FPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQ-L-AEIGCI----AVMPLAGLIGSGLGICNPYNLRIILEEAKVP--  189 (265)
T ss_dssp             CBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHH-H-HHSCCS----EEEECSSSTTCCCCCSCHHHHHHHHHHCSSC--
T ss_pred             CcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-H-HHhCCC----EEEeCCccCCCCCCcCCHHHHHHHHhcCCCC--
Confidence            377666665554   5599998788878776653 4 344543    2222 22222  3345788999999877765  


Q ss_pred             cEEEEe---cCHhhHHHHHHcCCeEEEEcC
Q 024956          167 SSLVIE---DSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       167 ~~~~vG---D~~~Dv~~a~~~G~~~i~~~~  193 (260)
                        +.++   .++.|+..+..+|...|++++
T Consensus       190 --VI~eGGI~TPsDAa~AmeLGAdgVlVgS  217 (265)
T 1wv2_A          190 --VLVDAGVGTASDAAIAMELGCEAVLMNT  217 (265)
T ss_dssp             --BEEESCCCSHHHHHHHHHHTCSEEEESH
T ss_pred             --EEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence              4456   456899999999999999987

>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}

Probab=89.11  E-value=1.4  Score=32.63  Aligned_cols=87  Identities=15%  Similarity=0.185  Sum_probs=53.7

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE-EeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI-VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED  173 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i-~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD  173 (260)
                      ++.+.|..+++.+-++++++-.+...--..+.+.+++.  +... +.+.+      +....-.-++..|++    ++|||
T Consensus        82 Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~--i~~~~~~~~~------e~~~~i~~l~~~G~~----vvVG~  149 (196)
T 2q5c_A           82 DTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVK--IKEFLFSSED------EITTLISKVKTENIK----IVVSG  149 (196)
T ss_dssp             HHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCE--EEEEEECSGG------GHHHHHHHHHHTTCC----EEEEC
T ss_pred             HHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCc--eEEEEeCCHH------HHHHHHHHHHHCCCe----EEECC
Confidence            56666677777777899998655443223333666664  2222 22111      112333344555665    79998


Q ss_pred             CHhhHHHHHHcCCeEEEEcCC
Q 024956          174 SVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       174 ~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      +.. ...|+..|++++++.++
T Consensus       150 ~~~-~~~A~~~Gl~~vli~sg  169 (196)
T 2q5c_A          150 KTV-TDEAIKQGLYGETINSG  169 (196)
T ss_dssp             HHH-HHHHHHTTCEEEECCCC
T ss_pred             HHH-HHHHHHcCCcEEEEecC
Confidence            886 68899999999999774

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=88.58  E-value=0.36  Score=40.02  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=17.7

Q ss_pred             ccEEEEecCCccccCHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEV   30 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~   30 (260)
                      +|.|+||+|||++.....+..+
T Consensus         1 ~~~~~fdvdgv~~~~~~~~d~~   22 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCFDVS   22 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHHHHH
T ss_pred             CceEEEecCceeechhhhccHH
Confidence            5789999999999886665443

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=86.48  E-value=1.2  Score=34.94  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=32.0

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      +...+.|++++++|++++++|+++...+...+ +.+++..
T Consensus        25 ~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~-~~l~l~~   63 (282)
T 1rkq_A           25 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYL-KELHMEQ   63 (282)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCGGGTHHHH-HHTTCCS
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHhCCCC
Confidence            34568899999999999999999988888777 6677653

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=85.70  E-value=0.26  Score=36.70  Aligned_cols=17  Identities=41%  Similarity=0.768  Sum_probs=14.7

Q ss_pred             cccEEEEecCCccccCH
Q 024956            8 LMSCVILDLDGTLLNTD   24 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~   24 (260)
                      +.+++++|+|+||+++.
T Consensus        27 ~k~~LVLDLD~TLvhs~   43 (195)
T 2hhl_A           27 GKKCVVIDLDETLVHSS   43 (195)
T ss_dssp             TCCEEEECCBTTTEEEE
T ss_pred             CCeEEEEccccceEccc
Confidence            46799999999999863

>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1

Probab=84.45  E-value=2.7  Score=31.89  Aligned_cols=86  Identities=10%  Similarity=0.064  Sum_probs=50.4

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE-EeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI-VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED  173 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i-~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD  173 (260)
                      ++.+.|..+++.+-++++++-.+...--..+.+.+++.  +... +.+.+      +.+..-.-++..|++    ++|||
T Consensus        94 Dil~aL~~a~~~~~kIavVg~~~~~~~~~~i~~ll~~~--i~~~~~~~~e------e~~~~i~~l~~~G~~----vVVG~  161 (225)
T 2pju_A           94 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLR--LDQRSYITEE------DARGQINELKANGTE----AVVGA  161 (225)
T ss_dssp             HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCC--EEEEEESSHH------HHHHHHHHHHHTTCC----EEEES
T ss_pred             HHHHHHHHHHhhCCcEEEEeCchhhhHHHHHHHHhCCc--eEEEEeCCHH------HHHHHHHHHHHCCCC----EEECC
Confidence            34445555555567899998665544333443666664  2222 22111      112222333444665    79998


Q ss_pred             CHhhHHHHHHcCCeEEEEcC
Q 024956          174 SVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       174 ~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.. ...|+..|++++++.+
T Consensus       162 ~~~-~~~A~~~Gl~~vlI~s  180 (225)
T 2pju_A          162 GLI-TDLAEEAGMTGIFIYS  180 (225)
T ss_dssp             HHH-HHHHHHTTSEEEESSC
T ss_pred             HHH-HHHHHHcCCcEEEECC
Confidence            886 6889999999999974

>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}

Probab=84.28  E-value=0.23  Score=39.74  Aligned_cols=24  Identities=42%  Similarity=0.695  Sum_probs=16.8

Q ss_pred             CCccccccccccccCCccccCCCCC
Q 024956          235 EPWYIGGPVVKGLGRGSKVLGIPTG  259 (260)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~  259 (260)
                      .|+-+.|.++.|.||| +.+|.|||
T Consensus       188 rpy~i~G~Vv~G~~~G-r~lGfPTA  211 (308)
T 3op1_A          188 APLPSRGMVVHGNARG-RTIGYPTA  211 (308)
T ss_dssp             SCCEEEEEEEBCC-------CCCCE
T ss_pred             cceeEEEEEEECCccC-cccCCCcE
Confidence            6788999999999999 78999997

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=84.00  E-value=1.6  Score=34.01  Aligned_cols=38  Identities=21%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             ccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           94 PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        94 ~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      +...+.|++|+++|++++++|++....+...+ +.+++.
T Consensus        29 ~~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~   66 (275)
T 1xvi_A           29 QPAAPWLTRLREANVPVILCSSKTSAEMLYLQ-KTLGLQ   66 (275)
T ss_dssp             CTTHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HHTTCT
T ss_pred             HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH-HHcCCC
Confidence            34578999999999999999999999888777 667764

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=83.63  E-value=1.7  Score=34.48  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=34.5

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCC---ChHhHHHHHHhhcCCc-cccceEEe
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNS---HRATIESKISYQHGWN-ESFSVIVG  140 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~---~~~~~~~~l~~~~gl~-~~f~~i~~  140 (260)
                      +.|++.+.+++|+++|++++++||+   ........+ +..|+. ...+.+++
T Consensus        38 ~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~-~~~g~~~~~~~~i~~   89 (306)
T 2oyc_A           38 AVPGAPELLERLARAGKAALFVSNNSRRARPELALRF-ARLGFGGLRAEQLFS   89 (306)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHH-HHTTCCSCCGGGEEE
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH-HhcCCCcCChhhEEc
Confidence            4568889999999999999999973   445555666 667775 33345544

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=83.36  E-value=0.47  Score=34.78  Aligned_cols=17  Identities=35%  Similarity=0.683  Sum_probs=14.7

Q ss_pred             ccccEEEEecCCccccC
Q 024956            7 KLMSCVILDLDGTLLNT   23 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~   23 (260)
                      .+.+++++|+|+||+++
T Consensus        13 ~~k~~LVLDLD~TLvhs   29 (181)
T 2ght_A           13 SDKICVVINLDETLVHS   29 (181)
T ss_dssp             TTSCEEEECCBTTTEEE
T ss_pred             CCCeEEEECCCCCeECC
Confidence            34589999999999986

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=80.52  E-value=3.4  Score=31.96  Aligned_cols=42  Identities=5%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNE  133 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~  133 (260)
                      .+.+...+.|++++++|++++++|+++...+...+ +.+++..
T Consensus        22 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~-~~l~~~~   63 (279)
T 3mpo_A           22 ELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQPYL-DAMDIDG   63 (279)
T ss_dssp             --CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCCS
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHH-HHcCCCC
Confidence            45677889999999999999999999998888777 7777654

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=80.19  E-value=2.6  Score=31.82  Aligned_cols=41  Identities=17%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCc
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWN  132 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~  132 (260)
                      .+.+...+.|++++++|++++++|++....+...+ +.+++.
T Consensus        20 ~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~-~~l~~~   60 (231)
T 1wr8_A           20 MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAAS-ILIGTS   60 (231)
T ss_dssp             CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHH-HHHTCC
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHH-HHcCCC
Confidence            45678899999999999999999999988887776 666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d2b0ca1	197	c.108.1.2 (A:8-204) Putative phosphatase YihX {Esc	6e-21
d1te2a_	218	c.108.1.6 (A:) Phosphatase YniC {Escherichia coli	3e-20
d1zs9a1	253	c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapien	6e-20
d2fdra1	222	c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {	3e-19
d1cr6a1	222	c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal	4e-19
d1o08a_	221	c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcu	2e-18
d1zd3a1	225	c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal	8e-18
d2fi1a1	187	c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Str	4e-17
d1swva_	257	c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Ba	5e-17
d1zrna_	220	c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pse	4e-16
d2g80a1	225	c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast	8e-16
d2go7a1	204	c.108.1.6 (A:3-206) Hypothetical protein SP2064 {S	2e-15
d2hdoa1	207	c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {	2e-15
d1qq5a_	245	c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xan	8e-15
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	2e-14
d2hsza1	224	c.108.1.6 (A:1-224) Phosphoglycolate phosphatase G	2e-14
d2hcfa1	228	c.108.1.6 (A:2-229) Hypothetical protein CT1708 {C	4e-14
d1u7pa_	164	c.108.1.17 (A:) Magnesium-dependent phosphatase-1,	1e-13
d2feaa1	226	c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthio	4e-13
d2ah5a1	210	c.108.1.6 (A:1-210) predicted phosphatase SP0104 {	1e-10
d2gfha1	247	c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatas	2e-10
d1x42a1	230	c.108.1.1 (A:1-230) Hypothetical protein PH0459 {A	6e-10
d1j97a_	210	c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon	3e-06
d2fpwa1	161	c.108.1.19 (A:3-163) Histidine biosynthesis bifunc	1e-05
d1nb9a_	147	b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapie	2e-05
d1n08a_	154	b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Sc	3e-05
d1nnla_	217	c.108.1.4 (A:) Phosphoserine phosphatase {Human (H	2e-04
d1yv9a1	253	c.108.1.14 (A:4-256) Putative hydrolase EF1188 {En	5e-04
d2c4na1	250	c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId	8e-04
d2o2xa1	209	c.108.1.19 (A:8-216) Hypothetical protein Mll2559	0.001
d1wvia_	253	c.108.1.14 (A:) Putative phosphatase SMU.1415c {St	0.001

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]} Length = 197

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

 Score = 85.6 bits (210), Expect = 6e-21
 Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 10/188 (5%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLE------EAAIIVED 65
            I DL   +++ D  F+ VL  +           +K   +G+   +            E 
Sbjct: 3   YIFDLGNVIVDID--FNRVLGAWSDLTRIPLASLKKSFHMGEAFHQHERGEISDEAFAEA 60

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
                A      +    +      ++  P    ++  L   G  + + SN++R       
Sbjct: 61  LCHEMALPLSYEQFSHGWQAVFVALR--PEVIAIMHKLREQGHRVVVLSNTNRLHTTFWP 118

Query: 126 SYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAG 185
                  ++   I  S ++   KP   I+    +     PS ++  +D+   +      G
Sbjct: 119 EEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTVFFDDNADNIEGANQLG 178

Query: 186 MEVVAVPS 193
           +  + V  
Sbjct: 179 ITSILVKD 186

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]} Length = 218

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

 Score = 84.1 bits (206), Expect = 3e-20
 Identities = 41/209 (19%), Positives = 90/209 (43%), Gaps = 3/209 (1%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGRE--KHKIVGKTPLEEAAIIVEDYGLP 69
            I D+DG L++++ ++       +   G +   R      +  +  +             
Sbjct: 6   AIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNG 65

Query: 70  CAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129
            ++ E V  V +     + + + L    R    L      +   +++    +  K+    
Sbjct: 66  PSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMF 125

Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
              +SF  +  ++++   KP P ++L+ A +L ++P + + +EDSV G++A KAA M  +
Sbjct: 126 DLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGVDPLTCVALEDSVNGMIASKAARMRSI 185

Query: 190 AVPSLPKQTH-RYTAADEVINSLLDLRPE 217
            VP+   Q   R+  A+  ++SL +L  +
Sbjct: 186 VVPAPEAQNDPRFVLANVKLSSLTELTAK 214

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (206), Expect = 6e-20
 Identities = 29/243 (11%), Positives = 67/243 (27%), Gaps = 40/243 (16%)

Query: 12  VILDLDGTLLNTD-------GMFSEVLKTFLVKYGKEWDGREKHKIVGKTPL-------- 56
           ++LD++GT                E +K +L  + +E + ++   ++ K           
Sbjct: 10  ILLDIEGTTTPIAFVKDILFPYIEENVKEYLQTHWEEEECQQDVSLLRKQAEEDAHLDGA 69

Query: 57  ------------------EEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC-----KVKAL 93
                             +     V        K   + ++              K +  
Sbjct: 70  VPIPAASGNGVDDLQQMIQAVVDNVCWQMSLDRKTTALKQLQGHMWRAAFTAGRMKAEFF 129

Query: 94  PGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDI 153
                 ++     G+ + + S+      +    +    +    V    D     K   + 
Sbjct: 130 ADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESES 189

Query: 154 FLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSL 211
           + + A  +    ++ L + D      A + A + V  V  P     T        +I S 
Sbjct: 190 YRKIADSIGCSTNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSF 249

Query: 212 LDL 214
            +L
Sbjct: 250 SEL 252

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]} Length = 222

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 81.8 bits (200), Expect = 3e-19
 Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 6/209 (2%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCA 71
           +I D DG L++++ + ++V    L + G      E  +       +   + VE       
Sbjct: 5   IIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPL 64

Query: 72  KHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGW 131
               +++   +    L +   +    +           +   S+SHR  +         +
Sbjct: 65  SASLLDKSEKLLDMRLERDVKIIDGVKFALSRLTTPRCICSNSSSHRLDMMLTKVGLKPY 124

Query: 132 NESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAV 191
                           KP PDIFL  A +  + P   +V+EDSV G+   +AAGM V+  
Sbjct: 125 FAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDRVVVVEDSVHGIHGARAAGMRVIGF 184

Query: 192 PS------LPKQTHRYTAADEVINSLLDL 214
                             A+ VI+ + DL
Sbjct: 185 TGASHTYPSHADRLTDAGAETVISRMQDL 213

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 222

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 4e-19
 Identities = 28/203 (13%), Positives = 60/203 (29%), Gaps = 24/203 (11%)

Query: 12  VILDLDGTLLNTD------------GMFSEVLKTFLVKYGKE------WDGREKHKIVGK 53
              DLDG L                 +  + L         E        G+        
Sbjct: 3   AAFDLDGVLALPSIAGAFRRSEEALALPRDFLLGAYQTEFPEGPTEQLMKGKITFSQWVP 62

Query: 54  TPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALA 113
              E      +  G    ++  +++++S                +    L   G    + 
Sbjct: 63  LMDESYRKSSKACGANLPENFSISQIFSQAMAAR---SINRPMLQAAIALKKKGFTTCIV 119

Query: 114 SNSHRATIESKISY---QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV 170
           +N+     + + S        ++ F  ++ S +V   KP P I+      L  +P+  + 
Sbjct: 120 TNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLKAKPNEVVF 179

Query: 171 IEDSVIGVVAGKAAGMEVVAVPS 193
           ++D    +   +  GM  + V +
Sbjct: 180 LDDFGSNLKPARDMGMVTILVHN 202

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]} Length = 221

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

 Score = 79.5 bits (194), Expect = 2e-18
 Identities = 48/214 (22%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
            V+ DLDG + +T        K    + G     R+ ++ +     E++   + D     
Sbjct: 4   AVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKK 63

Query: 71  AKHEFV-------NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
              E         N+ Y      +      PG  +L+K L  + + +ALAS S       
Sbjct: 64  VSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKN---GP 120

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
            +  +      F  I    EV   KP+PDIF+ AA  + + PS S+ +EDS  G+ A K 
Sbjct: 121 FLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHAVGVAPSESIGLEDSQAGIQAIKD 180

Query: 184 AGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE 217
           +G   + V               ++        E
Sbjct: 181 SGALPIGVGR----PEDLGDDIVIVPDTSHYTLE 210

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 8e-18
 Identities = 34/206 (16%), Positives = 58/206 (28%), Gaps = 24/206 (11%)

Query: 9   MSCVILDLDGTLLNTD------------GMFSEVLKTFLVKYGKEWD------GREKHKI 50
           +   + DLDG L                 +   +L     K G E        G      
Sbjct: 2   LRAAVFDLDGVLALPAVFGVLGRTEEALALPRGLLNDAFQKGGPEGATTRLMKGEITLSQ 61

Query: 51  VGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPM 110
                 E      E   +   K+  + E+   F   +   K      +    L   G   
Sbjct: 62  WIPLMEENCRKCSETAKVCLPKNFSIKEI---FDKAISARKINRPMLQAALMLRKKGFTT 118

Query: 111 ALASNSHRATIESKISY---QHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS 167
           A+ +N+       +             F  ++ S +V   KP P I+      L   PS 
Sbjct: 119 AILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLKASPSE 178

Query: 168 SLVIEDSVIGVVAGKAAGMEVVAVPS 193
            + ++D    +   +  GM  + V  
Sbjct: 179 VVFLDDIGANLKPARDLGMVTILVQD 204

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]} Length = 187

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 74.8 bits (182), Expect = 4e-17
 Identities = 36/183 (19%), Positives = 61/183 (33%), Gaps = 10/183 (5%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
             I DL GTLL+     +      L  YG   D    ++ +  +                
Sbjct: 5   DYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPF------AIETFAP 58

Query: 71  AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG 130
               F+ +     +  L       G + L++ +S  G    L S+ +   +E        
Sbjct: 59  NLENFLEKYKENEARELEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQVLEILEKTSIA 118

Query: 131 WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190
              +  V   S   R     P+  L   ++  +     LVI D  I + AG+AAG++   
Sbjct: 119 AYFTEVVTSSSGFKRKPN--PESMLYLREKYQISS--GLVIGDRPIDIEAGQAAGLDTHL 174

Query: 191 VPS 193
             S
Sbjct: 175 FTS 177

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]} Length = 257

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

 Score = 76.0 bits (185), Expect = 5e-17
 Identities = 36/247 (14%), Positives = 71/247 (28%), Gaps = 41/247 (16%)

Query: 9   MSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYG 67
           +  VI    GT ++       EV      K G      E  K +G   ++    + E   
Sbjct: 2   IEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPR 61

Query: 68  LPCAKHEFVNEVYSMFSDHLC--------------KVKALPGANRLIKHLSCHGVPMALA 113
           +    +    ++ +                         + G   +I  L   G+ +   
Sbjct: 62  IASEWNRVFRQLPTEADIQEMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGST 121

Query: 114 SNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN-MEPSSSLVIE 172
           +   R  ++               +V  D+V  G+P P +  + A  L     +  + + 
Sbjct: 122 TGYTREMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNHMIKVG 181

Query: 173 DSVIGVVAGKAAGMEVVAV-------------------------PSLPKQTHRYTAADEV 207
           D+V  +  G+ AGM  V V                           + +       A   
Sbjct: 182 DTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAHFT 241

Query: 208 INSLLDL 214
           I ++ +L
Sbjct: 242 IETMQEL 248

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]} Length = 220

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

 Score = 73.0 bits (177), Expect = 4e-16
 Identities = 30/213 (14%), Positives = 69/213 (32%), Gaps = 11/213 (5%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKY---GKEWDGREKHKIVGKT------PLEEAAII 62
           +  DL GTL +   +     + F  +       W  ++      ++        ++A   
Sbjct: 5   IAFDLYGTLFDVHSVVGRCDEAFPGRGREISALWRQKQLEYTWLRSLMNRYVNFQQATED 64

Query: 63  VEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIE 122
              +       +      S   D   ++         ++ L   G+ +A+ SN    +I+
Sbjct: 65  ALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSID 124

Query: 123 SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182
             +    G  + F  ++  D V+  KP   ++  A + L ++ S+ L +  +       +
Sbjct: 125 -AVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSAILFVASNAWDATGAR 183

Query: 183 AAGMEVVAVPSLPKQTHRY-TAADEVINSLLDL 214
             G     +              D  + SL  +
Sbjct: 184 YFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAV 216

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 8e-16
 Identities = 23/223 (10%), Positives = 57/223 (25%), Gaps = 19/223 (8%)

Query: 10  SCVILDLDGTLLNT----DGMFS---EVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA-- 60
           S  +LD++GT+       + +F      +   + +  ++               E+    
Sbjct: 4   STYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQAH 63

Query: 61  ---IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSH 117
              ++ +D   P  K          +     K      A   IK      +  + +  + 
Sbjct: 64  ILELVAKDVKDPILKQLQGYVWAHGYESGQIKAPVYADAIDFIKRKKRVFIYSSGSVKAQ 123

Query: 118 RATIE------SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171
           +          +        N         +     K     +    + +  + S  L +
Sbjct: 124 KLLFGYVQDPNAPAHDSLDLNSYIDGYFDIN-TSGKKTETQSYANILRDIGAKASEVLFL 182

Query: 172 EDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
            D+ + + A    G+                   +V  +   L
Sbjct: 183 SDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNFETL 225

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 70.6 bits (171), Expect = 2e-15
 Identities = 30/207 (14%), Positives = 73/207 (35%), Gaps = 9/207 (4%)

Query: 10  SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP 69
           +  I DLDGTLL++       ++    ++   +D  +  + + K  +++  + V +    
Sbjct: 2   TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNL 61

Query: 70  CAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH 129
             +           ++   +V  +PGA  ++      G+   + ++              
Sbjct: 62  DVEV-LNQVRAQSLAEKNAQVVLMPGAREVLAWADESGIQQFIYTHKGNNAFTILKDLGV 120

Query: 130 GWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVV 189
               +  +   S  VR  KPSP+       +  +   ++  I D  + V   + +G++ +
Sbjct: 121 ESYFTEILTSQSGFVR--KPSPEAATYLLDKYQLNSDNTYYIGDRTLDVEFAQNSGIQSI 178

Query: 190 AVPSLPKQTHRYTAADEVINSLLDLRP 216
                          +  I +L D+  
Sbjct: 179 NF------LESTYEGNHRIQALADISR 199

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]} Length = 207

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

 Score = 70.7 bits (171), Expect = 2e-15
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 5/204 (2%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
            ++ D+DGTL N+   ++ V++  L  YGK +   +  K            + E      
Sbjct: 5   ALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAA---EQAMTELGIAAS 61

Query: 71  AKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHG 130
               F  +   + + H  +++  PG   L + L            S R          + 
Sbjct: 62  EFDHFQAQYEDVMASHYDQIELYPGITSLFEQLPSELRLGI--VTSQRRNELESGMRSYP 119

Query: 131 WNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA 190
           +    +V + +D+    KP P   L A +++N+ P ++L I DSV      +AA ++   
Sbjct: 120 FMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAPQNALFIGDSVSDEQTAQAANVDFGL 179

Query: 191 VPSLPKQTHRYTAADEVINSLLDL 214
                     +          LD+
Sbjct: 180 AVWGMDPNADHQKVAHRFQKPLDI 203

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]} Length = 245

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

 Score = 69.8 bits (169), Expect = 8e-15
 Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 12  VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYG---- 67
           V+ D  GTL +   +     + +    G+      + K +  + L        D+     
Sbjct: 5   VVFDAYGTLFDVQSVADATERAYP-GRGEYITQVWRQKQLEYSWLRALMGRYADFWSVTR 63

Query: 68  --LPCAKHEFVNEVYSMFSDHL--CKVKALPGANRLIKHLSCHGVPMALASNSHRATIES 123
             L         E    F   +     +  P  +          +  A+ SN     ++ 
Sbjct: 64  EALAYTLGTLGLEPDESFLADMAQAYNRLTPYPDAAQCLAELAPLKRAILSNGAPDMLQ- 122

Query: 124 KISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKA 183
            +    G  +SF  ++  D  R  KP PD +    + L + P+  L +  +   V   K 
Sbjct: 123 ALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLGVTPAEVLFVSSNGFDVGGAKN 182

Query: 184 AGMEVVAV-----PSLPKQTHRYTAADEVINSLLDLRPEKWGLPP 223
            G  V  V      +L ++    T A   +   L +R E +   P
Sbjct: 183 FGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAP 227

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 69.8 bits (170), Expect = 2e-14
 Identities = 28/205 (13%), Positives = 59/205 (28%), Gaps = 34/205 (16%)

Query: 43  DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKH 102
             +     + +   +E  +  + Y     K        + +      ++ +     L+  
Sbjct: 168 SLKGALWTLAQEVYQEWYLGSKLYE-DVEKKIARTTFKTGYIYQEIILRPVDEVKVLLND 226

Query: 103 LSCHGVPMALASNSHRATIESKISYQHGWNESF--SVIVGSDEVRTG-----------KP 149
           L   G  + +A+               G    F    I  + +V              KP
Sbjct: 227 LKGAGFELGIATGRPYTETV-VPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKP 285

Query: 150 SPDIFLEAAKRLNME--------------PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLP 195
           +P  ++ A    N +                   ++ DS+  +++ +  G   +   +  
Sbjct: 286 NPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGL 345

Query: 196 KQTH-----RYTAADEVINSLLDLR 215
           K            AD VIN L +LR
Sbjct: 346 KGKDAAGELEAHHADYVINHLGELR 370

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]} Length = 224

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

 Score = 68.0 bits (164), Expect = 2e-14
 Identities = 36/215 (16%), Positives = 72/215 (33%), Gaps = 12/215 (5%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPC 70
            +  DLDGTL+N+    +  + + L                     +  +    D+    
Sbjct: 6   LIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQ 65

Query: 71  AKHEFVNEVYSMFS---------DHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATI 121
           A+ E   + +  F          +     +  P     ++ L   G  +A+ +N     +
Sbjct: 66  AEKELTEDEFKYFKRQFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHV 125

Query: 122 ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAG 181
           +  +    G +  FS ++G   +   KP P  F     +  + P   L + DS   + A 
Sbjct: 126 QPIL-TAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQILFVGDSQNDIFAA 184

Query: 182 KAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 214
            +AG  VV +            +  D + +   D+
Sbjct: 185 HSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADI 219

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]} Length = 228

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

 Score = 67.5 bits (163), Expect = 4e-14
 Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 15/221 (6%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           + L   V+ D+DGTLL  + M   VL   L++          H   GK        ++ +
Sbjct: 2   RTL---VLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSN 58

Query: 66  YGLPCAK-HEFVNEVYSMFSDHL------CKVKALPGANRLIKHLSCHGVPMALASNSHR 118
            GL  A+  +  ++    +            +  L G   L+  LS     +      + 
Sbjct: 59  VGLERAEIADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNF 118

Query: 119 ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEA---AKRLNMEPSSSLVIEDSV 175
                      G +  F     +D+       P I LE        N  PS  ++I D+ 
Sbjct: 119 EASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGANYSPSQIVIIGDTE 178

Query: 176 IGVVAGKAAGMEVVAVPS--LPKQTHRYTAADEVINSLLDL 214
             +   +      +AV +     +         +  +  + 
Sbjct: 179 HDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAET 219

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/217 (11%), Positives = 54/217 (24%), Gaps = 53/217 (24%)

Query: 5   LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE 64
           + +L    + DLD TL                     W                    V+
Sbjct: 1   MTRLPKLAVFDLDYTL---------------------WPF-----------------WVD 22

Query: 65  DYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESK 124
            +  P         V      +   ++  P    ++  L   GVP+A AS +      ++
Sbjct: 23  THVDPPFHKSSDGTVRDRRGQN---IQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQ 79

Query: 125 ISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA 184
           +       + F                  F     +  +  S  +  +D    ++     
Sbjct: 80  LLELFDLGKYFIQREIYP-----GSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRL 134

Query: 185 GMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGL 221
           G+  + +          +    +   L      + GL
Sbjct: 135 GVTCIHIR------DGMS-LQTLTQGLETFAKAQAGL 164

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]} Length = 226

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

 Score = 64.6 bits (156), Expect = 4e-13
 Identities = 36/237 (15%), Positives = 67/237 (28%), Gaps = 29/237 (12%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           K     +I D DGT+   D     ++KTF      EW   +   +     ++E    +  
Sbjct: 4   KPF---IICDFDGTITMND-NIINIMKTFA---PPEWMALKDGVLSKTLSIKEGVGRMFG 56

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
                 K E  + V           K   G    +  ++ H +P  + S          +
Sbjct: 57  LLPSSLKEEITSFVLE-------DAKIREGFREFVAFINEHEIPFYVISGGMD-FFVYPL 108

Query: 126 SYQHGWNESF---SVIVGSDEVRT----------GKPSPDIFLEAAKRLNMEPSSSLVIE 172
                  +          +D +                          L+      ++I 
Sbjct: 109 LEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIG 168

Query: 173 DSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIE 229
           DSV  V A K + +   A   L  +               ++R E   +   Q+W++
Sbjct: 169 DSVTDVEAAKLSDL-CFARDYLLNECREQNLNHLPYQDFYEIRKEIENVKEVQEWLQ 224

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]} Length = 210

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 57.5 bits (137), Expect = 1e-10
 Identities = 25/208 (12%), Positives = 67/208 (32%), Gaps = 8/208 (3%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGL 68
           ++ +  DLDGTL+++             + G      +  +     PLE +         
Sbjct: 4   ITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATCLSKDQ 63

Query: 69  PCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQ 128
                +     Y     +  ++       ++I  L        L   + + T  ++   +
Sbjct: 64  ISEAVQIYRSYYKAKGIYEAQLF-----PQIIDLLEELSSSYPLYITTTKDTSTAQDMAK 118

Query: 129 HGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV 188
           +     F                D+  +A +   + P  +++I D+   ++  +  G++ 
Sbjct: 119 NLEIHHF-FDGIYGSSPEAPHKADVIHQALQTHQLAPEQAIIIGDTKFDMLGARETGIQK 177

Query: 189 VAVPS--LPKQTHRYTAADEVINSLLDL 214
           +A+      +        D + +  L++
Sbjct: 178 LAITWGFGEQADLLNYQPDYIAHKPLEV 205

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]} Length = 247

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (136), Expect = 2e-10
 Identities = 39/228 (17%), Positives = 80/228 (35%), Gaps = 26/228 (11%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAI--------- 61
            V  DLD TL++T G     +   +     ++  +E+ +I+      + +          
Sbjct: 8   AVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYSTC 67

Query: 62  -----------IVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVP 109
                       +++        +   E Y ++     + +        ++  L    V 
Sbjct: 68  ITDVRTSHWEEAIQETKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRKE-VR 126

Query: 110 MALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL 169
           + L +N  R T   KI         F  IV   E +  KP+P IF      L ++P   +
Sbjct: 127 LLLLTNGDRQTQREKIEACA-CQSYFDAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV 185

Query: 170 VIEDSVI-GVVAGKAAGMEVVAV--PSLPKQTHRYTAADEVINSLLDL 214
           ++ D++   +  G  AG++       S             +++S+L+L
Sbjct: 186 MVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLEL 233

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 55.6 bits (132), Expect = 6e-10
 Identities = 26/222 (11%), Positives = 64/222 (28%), Gaps = 17/222 (7%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK---------------EWDGREKHKIVGK 53
           +  V  D  GTLL+ +G     LK      G                  +    +     
Sbjct: 2   IRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPY 61

Query: 54  TPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCK-VKALPGANRLIKHLSCHGVPMAL 112
            P+ +    V          ++    + +      +  +  P    ++K L      + +
Sbjct: 62  RPIRDIEEEVMRKLAEKYGFKYPENFWEIHLRMHQRYGELYPEVVEVLKSLKGK-YHVGM 120

Query: 113 ASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIE 172
            ++S    + + +      +   S+    +            L   K       +  V +
Sbjct: 121 ITDSDTEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKKAGVKGEEAVYVGD 180

Query: 173 DSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           + V      K  GM  + +    ++   +   D +++ L ++
Sbjct: 181 NPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREV 222

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 210

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 38/216 (17%), Positives = 67/216 (31%), Gaps = 31/216 (14%)

Query: 6   KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVED 65
           KKL   ++ D D TL+N     +E +     + G E + ++  K   +  L     + + 
Sbjct: 4   KKL---ILFDFDSTLVN-----NETIDEIAREAGVEEEVKKITKEAMEGKLNFEQSLRKR 55

Query: 66  YGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI 125
             L         E                GA   IK L   G  +A+ S      +    
Sbjct: 56  VSLLKDLPIEKVEKAIKRITPTE------GAEETIKELKNRGYVVAVVSGGFDIAVNKIK 109

Query: 126 SYQHGWNESFSVIVGSDEVRT---------GKPSPDIFLEAAKRLNMEPSSSLVIEDSVI 176
                     + ++  D   T              +I  + AK   +    ++ + D   
Sbjct: 110 EKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGDGAN 169

Query: 177 GVVAGKAAGMEVV--AVPSLPKQTHRYTAADEVINS 210
            +   K AG+++   A P L +       AD  I  
Sbjct: 170 DISMFKKAGLKIAFCAKPILKE------KADICIEK 199

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 17/129 (13%)

Query: 80  YSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRA-----------------TIE 122
                D   K+   PG    +  L   G  + + +N                        
Sbjct: 19  SDFQVDRFDKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQI 78

Query: 123 SKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGK 182
                           + +DE    KP   +         M+ ++S VI D    +   +
Sbjct: 79  FTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAE 138

Query: 183 AAGMEVVAV 191
             G+  +  
Sbjct: 139 NMGINGLRY 147

>d1nb9a_ b.43.5.1 (A:) Riboflavin kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 15/23 (65%), Positives = 18/23 (78%)

Query: 236 PWYIGGPVVKGLGRGSKVLGIPT 258
           P++  G VV+G GRGSK LGIPT
Sbjct: 4   PYFCRGQVVRGFGRGSKQLGIPT 26

>d1n08a_ b.43.5.1 (A:) Riboflavin kinase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 154

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Riboflavin kinase-like
family: ATP-dependent riboflavin kinase-like
domain: Riboflavin kinase
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 7/44 (15%)

Query: 215 RPEKWGLPPFQDWIEGTLPSEPWYIGGPVVKGLGRGSKVLGIPT 258
           RPE  G     + ++      P    G VV G GRGSK LGIPT
Sbjct: 1   RPEIVG----PEKVQ---SPYPIRFEGKVVHGFGRGSKELGIPT 37

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 37/225 (16%), Positives = 63/225 (28%), Gaps = 25/225 (11%)

Query: 4   PLKKLMS---CVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAA 60
            L+KL      V  D+D T++       E +       G E    E  +      +   A
Sbjct: 2   ELRKLFYSADAVCFDVDSTVIR-----EEGIDELAKICGVEDAVSEMTRRAMGGAVPFKA 56

Query: 61  IIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRAT 120
            + E   L     E V  + +    HL      PG   L+  L    V + L S   R+ 
Sbjct: 57  ALTERLALIQPSREQVQRLIAEQPPHLT-----PGIRELVSRLQERNVQVFLISGGFRSI 111

Query: 121 I----------ESKISYQHGWNESFSVIVGSDEV-RTGKPSPDIFLEAAKRLNMEPSSSL 169
           +           + +              G DE   T +      +    +        +
Sbjct: 112 VEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKII 171

Query: 170 VIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
           +I D    + A   A    +       +      A   I   ++L
Sbjct: 172 MIGDGATDMEACPPADA-FIGFGGNVIRQQVKDNAKWYITDFVEL 215

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 26/248 (10%), Positives = 59/248 (23%), Gaps = 44/248 (17%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTF-----------------------LVKYGKEWDGREK 47
             ++DLDGT+           +                         + +          
Sbjct: 4   GYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHV 63

Query: 48  HKIVGKTPLEEAAIIVEDYG----------------LPCAKHEFVNEVYSMFSDHLCKVK 91
              +  T        +++                  +  A  E+           L    
Sbjct: 64  PASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVGLDTEL 123

Query: 92  ALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSP 151
           +          +    + +    + +  T    +               +  V  GKP  
Sbjct: 124 SYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKA 183

Query: 152 DIFLEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPS---LPKQTHRYTA-ADE 206
            I   A   L +E    +++ D+    + +G   G++ + V S                 
Sbjct: 184 IIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTY 243

Query: 207 VINSLLDL 214
           V++SL + 
Sbjct: 244 VVDSLDEW 251

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]} Length = 250

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

 Score = 37.4 bits (85), Expect = 8e-04
 Identities = 33/248 (13%), Positives = 68/248 (27%), Gaps = 45/248 (18%)

Query: 9   MSCVILDLDGTLLNTDGMFSEVLKTF-----------------------LVKYGKEWDGR 45
           +  VI D+DG L++ +       +                         L          
Sbjct: 3   IKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVD 62

Query: 46  EKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLCKVKALP-----GANRLI 100
               +   + +  A  +    G           ++ ++          P     G  R  
Sbjct: 63  VPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSY 122

Query: 101 KHLSCHGVPMALASNSHRATIESKISYQ------HGWNESFSVIVGSDEVRTGKPSPDIF 154
                H     +A+ +           +               I G      GKPSP I 
Sbjct: 123 NWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALCAGIEKISGRKPFYVGKPSPWII 182

Query: 155 LEAAKRLNMEPSSSLVIEDSVIG-VVAGKAAGMEVVAVPS-------LPKQTHRYTAADE 206
             A  ++      ++++ D++   ++AG  AG+E + V S       +     R      
Sbjct: 183 RAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFR---PSW 239

Query: 207 VINSLLDL 214
           +  S+ ++
Sbjct: 240 IYPSVAEI 247

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]} Length = 209

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 13/163 (7%)

Query: 61  IIVEDYGLPCAKHEFV-----NEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASN 115
            I  D   P    E V         +  +     V  +   + + +         A+   
Sbjct: 33  TINVDTDYPSDPAEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGR 92

Query: 116 SHR----ATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVI 171
                    +   +     ++E+    +   +    KP+P + +EA KRL ++   SL++
Sbjct: 93  VLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIV 152

Query: 172 EDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL 214
            D +  + AGK AG+    +                I  L D 
Sbjct: 153 GDKLADMQAGKRAGLAQGWLVD----GEAAVQPGFAIRPLRDS 191

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]} Length = 253

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 31/248 (12%), Positives = 63/248 (25%), Gaps = 44/248 (17%)

Query: 11  CVILDLDGTLLNTDGMFSEVLKTF-----------------------LVKYGKEWDGREK 47
             ++DLDGT+                                     + +        + 
Sbjct: 4   GYLIDLDGTIYKGKDRIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKT 63

Query: 48  HKIVGKTPLEEAA---------IIVEDYGLPCAKHEFVNEVYSMFSDH-----LCKVKAL 93
                 T                     G    K       Y   S++     +     L
Sbjct: 64  PLETIYTATLATIDYMNDMKRGKTAYVIGETGLKKAVAEAGYREDSENPAYVVVGLDTNL 123

Query: 94  PGANRLIKHLSCHGVPMALASNSHRA-TIESKISYQHG-WNESFSVIVGSDEVRTGKPSP 151
                 +  L+     + + +N       E  +    G              +  GKP  
Sbjct: 124 TYEKLTLATLAIQKGAVFIGTNPDLNIPTERGLLPGAGAILFLLEKATRVKPIIIGKPEA 183

Query: 152 DIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAA----DE 206
            I  +A  RL ++   ++++ D+    + AG    +  + V +   +     A     D 
Sbjct: 184 VIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDF 243

Query: 207 VINSLLDL 214
           V++SL + 
Sbjct: 244 VLSSLAEW 251

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	100.0
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	100.0
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	100.0
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.98
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.97
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.97
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.97
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.97
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.97
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.96
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.96
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.96
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.96
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.95
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.94
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	99.92
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.91
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.9
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.89
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.89
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.87
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.85
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.84
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	99.83
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.83
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.81
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.81
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.78
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.77
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.76
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	99.67
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.67
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	99.66
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	99.55
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	99.44
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	99.44
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.43
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	99.37
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	99.36
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	99.33
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	99.29
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	99.22
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	99.17
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	99.15
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	99.13
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	99.06
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	99.02
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	98.98
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	98.82
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	98.82
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	98.78
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	98.75
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.52
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	98.51
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	98.35
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	97.95
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	97.58
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	96.88
d1y8aa1	308	Hypothetical protein AF1437 {Archaeon Archaeoglobu	96.35
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	91.62
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	90.1
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	89.16
d2pjua1	186	Propionate catabolism operon regulatory protein Pr	86.86
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	86.7
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	85.73
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	85.5
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	82.02
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	81.06

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=100.00  E-value=1.4e-34  Score=222.10  Aligned_cols=205  Identities=20%  Similarity=0.340  Sum_probs=176.3

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFSD   85 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (260)
                      |++|+|+||+||||+|+...+..++.++++++|.+..........+......    +...+.. ...+.+.+.+.+.+..
T Consensus         1 M~~k~viFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~   76 (207)
T d2hdoa1           1 MTYQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQA----MTELGIAASEFDHFQAQYEDVMAS   76 (207)
T ss_dssp             CCCSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHH----HHHTTCCGGGHHHHHHHHHHHHTT
T ss_pred             CCCcEEEEeCCCCcCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcchhhhh----hhccccchhhHHHHHHHhhhhhcc
Confidence            4589999999999999999999999999999999888888877777765433    3334433 2334555666666666


Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEP  165 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~  165 (260)
                      .....+++||+.++|++|++ +++++++||+....+...+ +.+++..+|+.++++++.+..||+|+.+..+++++|++|
T Consensus        77 ~~~~~~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~  154 (207)
T d2hdoa1          77 HYDQIELYPGITSLFEQLPS-ELRLGIVTSQRRNELESGM-RSYPFMMRMAVTISADDTPKRKPDPLPLLTALEKVNVAP  154 (207)
T ss_dssp             CGGGCEECTTHHHHHHHSCT-TSEEEEECSSCHHHHHHHH-TTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHHTTCCG
T ss_pred             cccccccccchhhhhhhhcc-ccccccccccccccccccc-ccccccccccccccccccccchhhhhhhcccccceeeec
Confidence            66778899999999999975 5999999999999999999 999999999999999999999999999999999999999


Q ss_pred             CcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccc
Q 024956          166 SSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       166 ~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      ++++||||+.+|+.+|+++|+.++++.++.........+++++.++.|++++
T Consensus       155 ~~~l~VgDs~~Di~~a~~aG~~~i~v~~g~~~~~~~~~~~~~i~~l~dll~l  206 (207)
T d2hdoa1         155 QNALFIGDSVSDEQTAQAANVDFGLAVWGMDPNADHQKVAHRFQKPLDILEL  206 (207)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEEEGGGCCTTGGGSCCSEEESSGGGGGGG
T ss_pred             cceeEecCCHHHHHHHHHcCCeEEEEecCCCChhHhhhcCcEeCCHHHHHhh
Confidence            9999999999999999999999999998766666666788999999988764

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-33  Score=217.03  Aligned_cols=208  Identities=23%  Similarity=0.378  Sum_probs=172.6

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChh-hhhhccCCCHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHH
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGR-EKHKIVGKTPLEEAAIIVEDYGLP-CAKHEFVNEVYSMFS   84 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   84 (260)
                      +++|+++||+||||+|+...+..++.+++++++.+++.. .+....+................. ....++.+...+.+.
T Consensus         1 ~~i~a~iFD~DGTL~dt~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (218)
T d1te2a_           1 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAI   80 (218)
T ss_dssp             CCCCEEEECCBTTTBCCHHHHHHHHHHHHHHTTCCGGGGGGSCCCTTCCHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHH
T ss_pred             CcceEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCCccchhhhhhhcccccchhHHHHHHHHHHHHH
Confidence            368999999999999998888899999999999877654 445667777766666665555443 333444444444443


Q ss_pred             hhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      ..+ ....++||+.++|+.|+++|++++++||+....+...+ +.+|+..+|+.++++++.+..||+|+.|+.+++++++
T Consensus        81 ~~~~~~~~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l-~~~~l~~~F~~i~~~~~~~~~Kp~~~~~~~~~~~l~~  159 (218)
T d1te2a_          81 SLVEETRPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVL-TMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAKLGV  159 (218)
T ss_dssp             HHHHHHCCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHHHTS
T ss_pred             HhhhccccccchHHHHHHHhhhcccccccccccccccccccc-ccccccccccccccccccccchhhHHHHHHHHHHcCC
Confidence            333 34678899999999999999999999999999999888 9999999999999999999999999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-cccccchhcccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-RYTAADEVINSLLDLR  215 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-~~~~~~~~v~~~~~l~  215 (260)
                      +|++++||||+.+|+.+|+++|+.+++++.+..... ....++++++++.||.
T Consensus       160 ~~~~~l~igD~~~di~aA~~~G~~~i~v~~~~~~~~~~~~~a~~~i~~l~el~  212 (218)
T d1te2a_         160 DPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELT  212 (218)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTCEEEECCCTTTTTCGGGGGSSEECSCGGGCC
T ss_pred             CchhcEEEeeCHHHHHHHHHcCCEEEEECCCCCccchhhcCCCEEECChhhCC
Confidence            999999999999999999999999999987443333 3567899999999985

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=100.00  E-value=3.1e-32  Score=211.14  Aligned_cols=212  Identities=17%  Similarity=0.208  Sum_probs=168.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCC-hhhhhhccCCCHHHHHHHHH----HHhCCCCCHHHHHH---
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWD-GREKHKIVGKTPLEEAAIIV----EDYGLPCAKHEFVN---   77 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~---   77 (260)
                      |+++|+|+||+||||+|+...+..++.++++++|.+.. ...+....+...........    ..............   
T Consensus         1 M~~~k~iiFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T d2hsza1           1 MTQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASENLVMTWIGNGADVLSQRAVDWACKQAEKELTEDEFKYFKR   80 (224)
T ss_dssp             CSSCSEEEECSBTTTEECHHHHHHHHHHHHHHTTCCCCCHHHHHHHCSSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCcccCHHHHHHHHHHHHHHCCCCCCcHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            56899999999999999999899999999999987544 44455566665544332222    22222222222111   


Q ss_pred             HHHHHH-HhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHH
Q 024956           78 EVYSMF-SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLE  156 (260)
Q Consensus        78 ~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~  156 (260)
                      ...... ........++|++.++|+.|++.|++++++||+....+...+ +.+|+..+|+.+++++..+..||+|+.+..
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l-~~~gl~~~f~~~~~~~~~~~~kp~p~~~~~  159 (224)
T d2hsza1          81 QFGFYYGENLCNISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPIL-TAFGIDHLFSEMLGGQSLPEIKPHPAPFYY  159 (224)
T ss_dssp             HHHHHHHHHTTSSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTCGGGCSEEECTTTSSSCTTSSHHHHH
T ss_pred             HHHHHHHHhhccccchHHHHHHHHHHHhccCCcccccccccHHHHHHHH-HhcCchhhccccccccccccccccchhhHH
Confidence            111112 122346789999999999999999999999999999999999 999999999999999999999999999999


Q ss_pred             HHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956          157 AAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       157 ~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      ++++++++|++++||||+.+|+.+|+.+|+.+|+++++......  ...++++++++.||.+.+
T Consensus       160 ~~~~~~~~~~~~~~igD~~~Di~~A~~aG~~~i~v~~g~~~~~~l~~~~~d~~v~~l~dL~~ii  223 (224)
T d2hsza1         160 LCGKFGLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYGYNYNIPIAQSKPDWIFDDFADILKIT  223 (224)
T ss_dssp             HHHHHTCCGGGEEEEESSHHHHHHHHHHTCEEEEESSSCSTTCCGGGGCCSEEESSGGGGGGGT
T ss_pred             HHHHhhhhhhccchhcCcHHHHHHHHHcCCeEEEEeCCCCCcchhhhcCCCEEECCHHHHHHhh
Confidence            99999999999999999999999999999999999986554332  456899999999998875

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.98  E-value=1.1e-31  Score=205.34  Aligned_cols=199  Identities=17%  Similarity=0.234  Sum_probs=162.0

Q ss_pred             cEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhh-ccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhc
Q 024956           10 SCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHK-IVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDHLC   88 (260)
Q Consensus        10 k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (260)
                      ++++||+||||+|+...+..++.++++++|.+...+.... ..+......+..+....+..  .+.+.......+.....
T Consensus         2 ~a~iFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~   79 (204)
T d2go7a1           2 TAFIWDLDGTLLDSYEAILSGIEETFAQFSIPYDKEKVREFIFKYSVQDLLVRVAEDRNLD--VEVLNQVRAQSLAEKNA   79 (204)
T ss_dssp             CEEEECTBTTTEECHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHSCHHHHHHHHHHHHTCC--HHHHHHHHHHHHTTCGG
T ss_pred             EEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCCHHHHHHhhcccccccccccccchhhhh--HHHHHHHHHHHHHhhcc
Confidence            5899999999999999888999999999998877665443 44556666777777766554  33333344444444455


Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcE
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSS  168 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~  168 (260)
                      ...++||+.++|+.|+++|++++|+||+... ....+ +++|+..+|+.++++++.+..||+++.|+.++++++++|++|
T Consensus        80 ~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~~-~~~~l-~~~gl~~~f~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~~  157 (204)
T d2go7a1          80 QVVLMPGAREVLAWADESGIQQFIYTHKGNN-AFTIL-KDLGVESYFTEILTSQSGFVRKPSPEAATYLLDKYQLNSDNT  157 (204)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSCTH-HHHHH-HHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             cCcccchHHhhhhcccccccchhhhcccchh-hhhhh-hhcccccccccccccccccccchhHHHHHHHHHHhCCCCceE
Confidence            6889999999999999999999999998764 45577 889999999999999999999999999999999999999999


Q ss_pred             EEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          169 LVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       169 ~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      +||||+.+|+.+|+.+|+.++++.++.      ..+++.++++.++.+++
T Consensus       158 l~VgD~~~Di~~A~~~G~~~i~v~~~~------~~~~~~~~~~~dl~~l~  201 (204)
T d2go7a1         158 YYIGDRTLDVEFAQNSGIQSINFLEST------YEGNHRIQALADISRIF  201 (204)
T ss_dssp             EEEESSHHHHHHHHHHTCEEEESSCCS------CTTEEECSSTTHHHHHT
T ss_pred             EEEeCCHHHHHHHHHcCCeEEEEcCCC------CCcCeecCCHHHHHHHh
Confidence            999999999999999999999998742      23556667777765554

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.97  E-value=1.3e-31  Score=212.24  Aligned_cols=211  Identities=18%  Similarity=0.223  Sum_probs=166.1

Q ss_pred             cccEEEEecCCccccCHHH-HHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHH----------HhCCCCCHH---
Q 024956            8 LMSCVILDLDGTLLNTDGM-FSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVE----------DYGLPCAKH---   73 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~---   73 (260)
                      ++|+|+||+||||+|+... ...++.+.+++++..++.+++...+|....+..+.+..          .++......   
T Consensus         1 kIkaviFD~dGTL~d~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (257)
T d1swva_           1 KIEAVIFAWAGTTVDYGCFAPLEVFMEIFHKRGVAITAEEARKPMGLLKIDHVRALTEMPRIASEWNRVFRQLPTEADIQ   80 (257)
T ss_dssp             CCCEEEECSBTTTBSTTCCTTHHHHHHHHHTTTCCCCHHHHHTTTTSCHHHHHHHHHHSHHHHHHHHHHHSSCCCHHHHH
T ss_pred             CcEEEEEcCCCCeEeCcchHHHHHHHHHHHHcCCCCCHHHHHHHhCCcHHHHHHHHhhhhhhhHHHHHHhcccCCHHHHH
Confidence            5899999999999997543 35677888899999888888888887766554443322          222222222   


Q ss_pred             HHHHHHHHHHHhhh-ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCcccc-ceEEeccccCCCCCCh
Q 024956           74 EFVNEVYSMFSDHL-CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESF-SVIVGSDEVRTGKPSP  151 (260)
Q Consensus        74 ~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f-~~i~~~~~~~~~kp~~  151 (260)
                      .....+.+.+...+ ....++||+.++|+.|+++|++++++||++...+...+ +.+|+..+| +.++++++.+..||+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l-~~~~l~~~f~d~~~~~d~~~~~KP~p  159 (257)
T d1swva_          81 EMYEEFEEILFAILPRYASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVA-KEAALQGYKPDFLVTPDDVPAGRPYP  159 (257)
T ss_dssp             HHHHHHHHHHHHHGGGGCCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHH-HHHHHTTCCCSCCBCGGGSSCCTTSS
T ss_pred             HHHHHHHHHHHHHhhccCccCCcHHHHHHHHHhcccceeecCCCchhhHHHHH-HHHhhcccccccccccccccccccCh
Confidence            23333444444433 34689999999999999999999999999999999899 888998877 7888999999999999


Q ss_pred             HHHHHHHHHcCCC-CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc-------------------------cccccc
Q 024956          152 DIFLEAAKRLNME-PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH-------------------------RYTAAD  205 (260)
Q Consensus       152 ~~~~~~l~~l~~~-~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~-------------------------~~~~~~  205 (260)
                      +.|..+++++++. +++|+||||+.+|+.+|+++|+.+|++.+|.+...                         ....|+
T Consensus       160 ~~~~~~~~~l~~~p~~~~v~VgDs~~Di~aA~~aG~~ti~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gad  239 (257)
T d1swva_         160 WMCYKNAMELGVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILGSSELGLTEEEVENMDSVELREKIEVVRNRFVENGAH  239 (257)
T ss_dssp             HHHHHHHHHHTCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTTCTTTCCCHHHHHHSCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHhCCCCcceEEEEeCChhhHHHHHHCCCEEEEEccCCCCCCCCHHHHhhCCHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999995 58999999999999999999999999998654210                         022489


Q ss_pred             hhcccccccccccc
Q 024956          206 EVINSLLDLRPEKW  219 (260)
Q Consensus       206 ~~v~~~~~l~~~~~  219 (260)
                      ++++++.||...+.
T Consensus       240 ~vi~~l~eL~~ii~  253 (257)
T d1swva_         240 FTIETMQELESVME  253 (257)
T ss_dssp             EEESSGGGHHHHHH
T ss_pred             EEECCHHHHHHHHH
Confidence            99999999987764

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.97  E-value=2.5e-31  Score=204.22  Aligned_cols=205  Identities=16%  Similarity=0.229  Sum_probs=164.0

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCC-ChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEW-DGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFS   84 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (260)
                      |+++|+|+||+||||+|+...+..++.+++++++.+. +.+.++...+......+...+..    .......+.+...+.
T Consensus         1 M~~ik~VifD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   76 (210)
T d2ah5a1           1 MTSITAIFFDLDGTLVDSSIGIHNAFTYTFKELGVPSPDAKTIRGFMGPPLESSFATCLSK----DQISEAVQIYRSYYK   76 (210)
T ss_dssp             CTTCCEEEECSBTTTEECHHHHHHHHHHHHHHHTCCCCCHHHHHHTSSSCHHHHHHTTSCG----GGHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHhhhcchhhhccccccc----hhhHHHHHHHHHHHH
Confidence            5679999999999999999999999999999998764 45566667777665544333211    122333344444443


Q ss_pred             hh-hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCC
Q 024956           85 DH-LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        85 ~~-~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~  163 (260)
                      .. .....+++++.++|+.++.. ++++++|+++....+..+ +.+|+..+|+.+++++..  ++|+|+.+..+++++|+
T Consensus        77 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l-~~~gl~~~fd~v~~~~~~--~~~~p~~~~~~~~~~~~  152 (210)
T d2ah5a1          77 AKGIYEAQLFPQIIDLLEELSSS-YPLYITTTKDTSTAQDMA-KNLEIHHFFDGIYGSSPE--APHKADVIHQALQTHQL  152 (210)
T ss_dssp             HTGGGSCEECTTHHHHHHHHHTT-SCEEEEEEEEHHHHHHHH-HHTTCGGGCSEEEEECSS--CCSHHHHHHHHHHHTTC
T ss_pred             hhhhhcccchhHHHHHHhhhhcc-cchhhcccccchhhhHHH-Hhhccccccccccccccc--ccccccccchhhhhhhc
Confidence            33 34678899999999999877 599999999999999999 999999999999988765  57778999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhccccccccccc
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~  218 (260)
                      +|++++||||+.+|+.+|+++|++++++.+|....+.  ...|+++++++.||+..+
T Consensus       153 ~~~~~v~VGDs~~Di~aa~~aGi~~i~v~~g~~~~~~l~~~~pd~vi~~l~el~~~l  209 (210)
T d2ah5a1         153 APEQAIIIGDTKFDMLGARETGIQKLAITWGFGEQADLLNYQPDYIAHKPLEVLAYF  209 (210)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEESSSSSCHHHHHTTCCSEEESSTTHHHHHT
T ss_pred             ccccceeecCCHHHHHHHHHcCCeEEEEcCCCCCHHHHHhCCCCEEECCHHHHHHHh
Confidence            9999999999999999999999999999886544333  456899999999988765

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=3.5e-30  Score=199.24  Aligned_cols=183  Identities=25%  Similarity=0.356  Sum_probs=152.3

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHH---HHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEF---VNEVYSMF   83 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   83 (260)
                      |+|+|+||+||||+|+...+..++.+++.+++.+.....+ ....+.......+.+....+...+.+.+   .....+.+
T Consensus         1 MikaiiFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d1o08a_           1 MFKAVLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKILDLADKKVSAEEFKELAKRKNDNY   80 (221)
T ss_dssp             CCCEEEECCBTTTBTHHHHHHHHHHHHHHHTTCCCCCHHHHTTTTTCCHHHHHHHHHTTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEcCCCCeEcCHHHHHHHHHHHHHHcCCCCChHHHHHHHhhccchhhhhhccccccccchhhhhhhHHHHHHhhc
Confidence            6899999999999999888889999999999877655444 4556777777777777766655555443   23333333


Q ss_pred             Hhhhc---cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHH
Q 024956           84 SDHLC---KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKR  160 (260)
Q Consensus        84 ~~~~~---~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~  160 (260)
                      .....   ...++||+.++|+.|++.|++++++|++..  ....+ +..++..+|+.++++++.+.+||+|+.|+.++++
T Consensus        81 ~~~~~~~~~~~~~~g~~~~l~~l~~~~~~i~i~s~~~~--~~~~l-~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~l~~  157 (221)
T d1o08a_          81 VKMIQDVSPADVYPGILQLLKDLRSNKIKIALASASKN--GPFLL-ERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHA  157 (221)
T ss_dssp             HHHTTTCCGGGBCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHH-HHTTCGGGCSEECCTTTSSSCTTSTHHHHHHHHH
T ss_pred             cccccccccccccCCceeccccccccccceEEEeecch--hhHHH-HhhccccccccccccccccccccChHHHHHHHHH
Confidence            33322   467899999999999999999999998754  45577 8889999999999999999999999999999999


Q ss_pred             cCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          161 LNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       161 l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +|++|++|+||||+.+|+.+|+.+|+.+|++++
T Consensus       158 ~~i~~~~~l~VgD~~~di~~A~~aG~~~i~v~~  190 (221)
T d1o08a_         158 VGVAPSESIGLEDSQAGIQAIKDSGALPIGVGR  190 (221)
T ss_dssp             TTCCGGGEEEEESSHHHHHHHHHHTCEEEEESC
T ss_pred             cCCCCceEEEEecCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999999999999987

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.97  E-value=1.7e-30  Score=201.16  Aligned_cols=207  Identities=23%  Similarity=0.358  Sum_probs=170.4

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh-
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH-   86 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   86 (260)
                      +|+|+||+||||+|+...+..++.++++++|.+++.+.+ ..+.+.+.....+.+....+.+... +..+.+...+... 
T Consensus         2 ~kaviFD~DGtL~dt~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~   80 (222)
T d2fdra1           2 FDLIIFDCDGVLVDSEIIAAQVESRLLTEAGYPISVEEMGERFAGMTWKNILLQVESEASIPLSA-SLLDKSEKLLDMRL   80 (222)
T ss_dssp             CSEEEECSBTTTBCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCCHHHHHHHHHHHHCCCCCT-HHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCcccCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHhhhccccccccccccccccccc-cchhHHHHHHHHHh
Confidence            799999999999999998999999999999998886665 5567888888888888888877553 3444554444433 


Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-ccc--cCCCCCChHHHHHHHHHcCC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDE--VRTGKPSPDIFLEAAKRLNM  163 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-~~~--~~~~kp~~~~~~~~l~~l~~  163 (260)
                      .....++|++.++|++|+.   +.+++|++....+...+ +.+++..+|+.++. +++  ....||+|+.|..+++++|+
T Consensus        81 ~~~~~~~~g~~~~L~~l~~---~~~i~t~~~~~~~~~~l-~~~~l~~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~  156 (222)
T d2fdra1          81 ERDVKIIDGVKFALSRLTT---PRCICSNSSSHRLDMML-TKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGV  156 (222)
T ss_dssp             HHHCCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHH-HHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTC
T ss_pred             hhccchhhhHHHHhhhccc---cceeeeecchhhhhhhh-cccccccccceeecccccccccccccCHHHHHHHHHhhCC
Confidence            3468899999999998864   57899999999999888 99999999987554 433  46789999999999999999


Q ss_pred             CCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc------ccccchhccccccccccccC
Q 024956          164 EPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR------YTAADEVINSLLDLRPEKWG  220 (260)
Q Consensus       164 ~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~------~~~~~~~v~~~~~l~~~~~~  220 (260)
                      +|++++||||+..|+.+|+++|+.++++.++......      ...|+++++++.||..++..
T Consensus       157 ~p~~~l~vgDs~~dv~aA~~aG~~~i~v~~~~~~~~~~~~~l~~~~ad~vi~~l~eL~~ll~~  219 (222)
T d2fdra1         157 SPDRVVVVEDSVHGIHGARAAGMRVIGFTGASHTYPSHADRLTDAGAETVISRMQDLPAVIAA  219 (222)
T ss_dssp             CGGGEEEEESSHHHHHHHHHTTCEEEEECCSTTCCTTHHHHHHHHTCSEEESCGGGHHHHHHH
T ss_pred             CCceEEEEcCCHHHHHHHHHcCCEEEEEccCCCCCcchHHHHHhCCCCEEECCHHHHHHHHHH
Confidence            9999999999999999999999999999885432211      34589999999999887753

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.97  E-value=3.6e-30  Score=194.31  Aligned_cols=177  Identities=22%  Similarity=0.248  Sum_probs=148.4

Q ss_pred             ccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Q 024956            7 KLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSDH   86 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (260)
                      |++|+|+||+||||+|+...+..++.++++.++...+........+......++.+    ...  .+.+.+.+.+.+...
T Consensus         1 M~~k~viFD~DGTL~dt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~   74 (187)
T d2fi1a1           1 MKYHDYIWDLGGTLLDNYETSTAAFVETLALYGITQDHDSVYQALKVSTPFAIETF----APN--LENFLEKYKENEARE   74 (187)
T ss_dssp             CCCSEEEECTBTTTBCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCHHHHHHHH----CTT--CTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcccCHHHHHHHHHHHHHHcCCCccHHHHHhhhhccchhhhhhh----hHH--HHHHHHHHHHHHHHH
Confidence            46899999999999999888889999999999988877777666665554443333    222  234455566666666


Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .....++||+.++|+.|+++|++++++||+..... ..+ +.+++..+|+.++++++.+..||+|+.+..+++++++  +
T Consensus        75 ~~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~~-~~l-~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~~~~--~  150 (187)
T d2fi1a1          75 LEHPILFEGVSDLLEDISNQGGRHFLVSHRNDQVL-EIL-EKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREKYQI--S  150 (187)
T ss_dssp             TTSCCBCTTHHHHHHHHHHTTCEEEEECSSCTHHH-HHH-HHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHHTTC--S
T ss_pred             hhcCcccchhHHHHHHHHhhhccccccccCccchh-hhh-hhhccccccccccccccccccCCCHHHHHHHHHHcCC--C
Confidence            66788999999999999999999999999877655 467 7899999999999999999999999999999999986  4


Q ss_pred             cEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          167 SSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       167 ~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +++||||+..|+.+|+++|+.++++++
T Consensus       151 ~~l~vgDs~~Di~aA~~aG~~~i~v~~  177 (187)
T d2fi1a1         151 SGLVIGDRPIDIEAGQAAGLDTHLFTS  177 (187)
T ss_dssp             SEEEEESSHHHHHHHHHTTCEEEECSC
T ss_pred             CeEEEeCCHHHHHHHHHcCCEEEEECC
Confidence            699999999999999999999999976

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.96  E-value=7.5e-30  Score=198.41  Aligned_cols=209  Identities=22%  Similarity=0.292  Sum_probs=157.2

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHc-CCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCH-HH----HHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKY-GKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAK-HE----FVNEVYSM   82 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~   82 (260)
                      .|+|+||+||||+|+...+..++.+.+.+. +...... ...+.+..........++.++..... .+    ..+.+...
T Consensus         2 ~klviFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (228)
T d2hcfa1           2 RTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTG-SHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYIAL   80 (228)
T ss_dssp             CEEEEECCBTTTEEECTHHHHHHHHHHHHHHSCCCCC----CCTTCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcccCHHHHHHHHHHHHHHHcCCCccHH-HHHHhcCchHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Confidence            478999999999999888888888777664 3332222 22334455555566666666554211 11    11122222


Q ss_pred             HHhhh--ccCCCCccHHHHHHHHHHCC-CcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           83 FSDHL--CKVKALPGANRLIKHLSCHG-VPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        83 ~~~~~--~~~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      +....  ....++||+.++|++|+++| ++++++||+....+...+ +.+|+..+|+.++++++....||+|..+...++
T Consensus        81 ~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l-~~~gl~~~fd~i~~~~~~~~~k~~p~~~~~~~~  159 (228)
T d2hcfa1          81 FRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKL-KLPGIDHYFPFGAFADDALDRNELPHIALERAR  159 (228)
T ss_dssp             HHHHCCGGGEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHH-HTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHH
T ss_pred             HHHHhhccCceecCchHHHHhhhhccccccccccCCCcchhhhhhh-hhhcccccccccccccccccccchhHHHHHHhh
Confidence            22222  24678999999999999987 899999999999999999 899999999999999999999999988776666


Q ss_pred             Hc---CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc--ccccchhcccccccccccc
Q 024956          160 RL---NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR--YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       160 ~l---~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~--~~~~~~~v~~~~~l~~~~~  219 (260)
                      .+   +++|++++||||+++|+.+|+.+|+.+|++.++....+.  ...|+++++++.||.+.+.
T Consensus       160 ~~~~~~~~p~~~l~VGD~~~Di~aA~~aG~~~i~v~~g~~~~~~l~~~~ad~vi~~~~el~~~l~  224 (228)
T d2hcfa1         160 RMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLA  224 (228)
T ss_dssp             HHHCCCCCGGGEEEEESSHHHHHHHHTTTCEEEEECCSSSCHHHHHTTCCSEEESCSCCHHHHHH
T ss_pred             hhcccCCChhHheeecCChHHHHHHHHcCCEEEEEcCCCCCHHHHhhCCCCEEECCHHHHHHHHH
Confidence            65   789999999999999999999999999999886544443  4578999999999987764

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.1e-29  Score=198.10  Aligned_cols=214  Identities=18%  Similarity=0.269  Sum_probs=154.4

Q ss_pred             cccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhh----h------------hccCCCHHH----HHHHHHHH
Q 024956            6 KKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREK----H------------KIVGKTPLE----EAAIIVED   65 (260)
Q Consensus         6 ~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~----~------------~~~g~~~~~----~~~~~~~~   65 (260)
                      |+++|+|+||+||||+|+......++.++++.++........    .            .........    .+...+..
T Consensus         3 m~~IKaviFD~dGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (247)
T d2gfha1           3 LSRVRAVFFDLDNTLIDTAGASRRGMLEVIKLLQSKYHYKEEAEIICDKVQVKLSKECFHPYSTCITDVRTSHWEEAIQE   82 (247)
T ss_dssp             CCCCCEEEECCBTTTBCHHHHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHHHTCCCC----CHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEcCCCCcCcChHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            578999999999999998877777777766654322211110    0            000111111    12223333


Q ss_pred             hCCCCCHHHHHHHHHHHH-HhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecccc
Q 024956           66 YGLPCAKHEFVNEVYSMF-SDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~  144 (260)
                      .........+.+.....+ ........++|++.++|++|++ +++++++||++...+...+ +.+|+..+|+.++++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~  160 (247)
T d2gfha1          83 TKGGADNRKLAEECYFLWKSTRLQHMILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKI-EACACQSYFDAIVIGGEQ  160 (247)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHH-HHHTCGGGCSEEEEGGGS
T ss_pred             hccccchHHHHHHHHHHHHHhhhccCccCccHHHHHHHhhc-ccceEEeecccchhhhhhh-hhcccccccccccccccc
Confidence            333333333333333333 2233567899999999999985 7999999999999988888 889999999999999999


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEE-EEcCCC-CccccccccchhccccccccccccCC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVV-AVPSLP-KQTHRYTAADEVINSLLDLRPEKWGL  221 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i-~~~~~~-~~~~~~~~~~~~v~~~~~l~~~~~~l  221 (260)
                      +..||+|++|+.+++++|++|++++||||++ +|+.+|+.+|+.++ +++... ........|+++++++.+|..++.++
T Consensus       161 ~~~KP~p~~~~~~~~~~~~~~~~~l~iGD~~~~Di~~A~~~G~~~~~~~~~~~~~~~~~~~~p~~~i~~l~eL~~ll~~i  240 (247)
T d2gfha1         161 KEEKPAPSIFYHCCDLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKSGRVPLTSSPMPHYMVSSVLELPALLQSI  240 (247)
T ss_dssp             SSCTTCHHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCSEEEEECTTCCCCSSCCCCCSEEESSGGGHHHHHHHH
T ss_pred             ccchhhhhhHHHHHHHhhcCHHhcceeccChHhHHHHHHHcCCeEEEEECCCCCCcccccCCCCEEECCHHHHHHHHHHH
Confidence            9999999999999999999999999999998 79999999999855 454422 22233567899999999998887643

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.96  E-value=5.5e-30  Score=199.45  Aligned_cols=206  Identities=19%  Similarity=0.254  Sum_probs=151.7

Q ss_pred             cccEEEEecCCccccCHHHHHHHHHHHHHHcCC-CCChhhhh------------hccC---CCHH----HHHHHHHHHhC
Q 024956            8 LMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGK-EWDGREKH------------KIVG---KTPL----EEAAIIVEDYG   67 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~-~~~~~~~~------------~~~g---~~~~----~~~~~~~~~~~   67 (260)
                      |+|+|+||+||||+|...........+.+.++. ........            ...+   ....    +.++.+..+.+
T Consensus         1 MiK~I~FD~dGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (230)
T d1x42a1           1 MIRAVFFDFVGTLLSVEGEAKTHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPYRPIRDIEEEVMRKLAEKYG   80 (230)
T ss_dssp             CCCEEEECSBTTTBCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHHHHHTTSBCCCHHHHHHHHHHHHHHHHC
T ss_pred             CCeEEEEeCCCCcEechhhHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhh
Confidence            579999999999999876655444444443331 22222111            1111   1111    22334444444


Q ss_pred             CCCCHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCC
Q 024956           68 LPCAKHEFVNEVYSMFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTG  147 (260)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~  147 (260)
                      ..... ...+.......   ....++||+.++|+.|++ +++++++||+....+...+ +.+|+..+|+.++++++.+..
T Consensus        81 ~~~~~-~~~~~~~~~~~---~~~~~~p~~~~~L~~l~~-~~~i~i~Sn~~~~~~~~~l-~~~gl~~~fd~i~~s~~~~~~  154 (230)
T d1x42a1          81 FKYPE-NFWEIHLRMHQ---RYGELYPEVVEVLKSLKG-KYHVGMITDSDTEYLMAHL-DALGIKDLFDSITTSEEAGFF  154 (230)
T ss_dssp             CCCCT-THHHHHHHHHH---HHCCBCTTHHHHHHHHBT-TBEEEEEESSCHHHHHHHH-HHHTCGGGCSEEEEHHHHTBC
T ss_pred             hchHH-HHHHHHHHHHH---hhCcccccHHHHHHHhhc-cCceeeeeccccccchhhh-ccccccccccccccccccccc
Confidence            43221 11122211111   236789999999999974 6999999999999999888 889999999999999999999


Q ss_pred             CCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          148 KPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      ||+|+.|+.+++++|++|+++++|||++ +|+.+|+++|+.+++++++.........++++++|++||.+.+.
T Consensus       155 KP~~~~~~~~~~~l~~~p~~~l~vgD~~~~Di~~A~~~G~~~v~v~~~~~~~~~~~~~d~~i~~l~el~~~l~  227 (230)
T d1x42a1         155 KPHPRIFELALKKAGVKGEEAVYVGDNPVKDCGGSKNLGMTSILLDRKGEKREFWDKCDFIVSDLREVIKIVD  227 (230)
T ss_dssp             TTSHHHHHHHHHHHTCCGGGEEEEESCTTTTHHHHHTTTCEEEEECTTSCCGGGGGGSSEEESSTTHHHHHHH
T ss_pred             chhhHHHHHHHhhhcccccccceeecCcHhHHHHHHHcCCEEEEECCCCCCcccccCCCEEECCHHHHHHHHH
Confidence            9999999999999999999999999996 89999999999999998865555666788999999999987764

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.96  E-value=9.1e-28  Score=185.30  Aligned_cols=129  Identities=16%  Similarity=0.246  Sum_probs=116.8

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      ....+++++.++++.+++.+++++++||+.....+..+ ...++..+|+.++++++.+..||+|+.|+.+++++|++|++
T Consensus        90 ~~~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~-~~~~~~~~fd~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e  168 (220)
T d1zrna_          90 LRLAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVV-SHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQALGLDRSA  168 (220)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHHHTSCGGG
T ss_pred             ccccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHH-hhccccccccceeeeeeeeccccHHHHHHHHHHHhCCCCce
Confidence            45678999999999999999999999999999988888 88999999999999999999999999999999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCCCC-ccccccccchhcccccccccc
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPK-QTHRYTAADEVINSLLDLRPE  217 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~-~~~~~~~~~~~v~~~~~l~~~  217 (260)
                      ++||||++.|+.+|+++|+.+++++++.. .......|+++++++.||+++
T Consensus       169 ~l~VgD~~~Di~~A~~aG~~~v~v~r~~~~~~~~~~~~d~~i~~l~el~~l  219 (220)
T d1zrna_         169 ILFVASNAWDATGARYFGFPTCWINRTGNVFEEMGQTPDWEVTSLRAVVEL  219 (220)
T ss_dssp             EEEEESCHHHHHHHHHHTCCEEEECTTCCCCCSSSCCCSEEESSHHHHHTT
T ss_pred             EEEEecChHhHHHHHHcCCEEEEEcCCCCCcccccCCCCEEECCHHHHHhh
Confidence            99999999999999999999999987433 333356689999999998765

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.9e-27  Score=182.50  Aligned_cols=128  Identities=13%  Similarity=0.094  Sum_probs=110.1

Q ss_pred             hhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEe-ccccCCCCCChHHHHHHHHHcCCC
Q 024956           86 HLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVG-SDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        86 ~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~-~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ......++||+.++|++|+++|++++++||+........+ +..++..+++.... .+.....||+|..|..+++++|++
T Consensus       122 ~~~~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~  200 (253)
T d1zs9a1         122 GRMKAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLF-GHSTEGDILELVDGHFDTKIGHKVESESYRKIADSIGCS  200 (253)
T ss_dssp             TSCCBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HTBTTBCCGGGCSEEECGGGCCTTCHHHHHHHHHHHTSC
T ss_pred             hhcccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHH-HHcCcchhhhhcceeeccccccCCCcHHHHHHHHHhCCC
Confidence            3446788999999999999999999999999999888888 88898888876543 355667999999999999999999


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccc--cccccchhccccccc
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTH--RYTAADEVINSLLDL  214 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~--~~~~~~~~v~~~~~l  214 (260)
                      |++++||||+.+|+.+|+++|+.+++++++.....  ....++.+++|++||
T Consensus       201 p~~~l~vgD~~~dv~aA~~aG~~ti~v~r~g~~~~~~~~~~~~~~i~sl~EL  252 (253)
T d1zs9a1         201 TNNILFLTDVTREASAAEEADVHVAVVVRPGNAGLTDDEKTYYSLITSFSEL  252 (253)
T ss_dssp             GGGEEEEESCHHHHHHHHHTTCEEEEECCTTCCCCCHHHHHHSCEESSGGGC
T ss_pred             cCcEEEEeCCHHHHHHHHHcCCEEEEEeCCCCCCCchhhcCCCcEECChHHh
Confidence            99999999999999999999999999987433332  246678899999987

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.94  E-value=9.1e-27  Score=182.46  Aligned_cols=135  Identities=23%  Similarity=0.345  Sum_probs=115.8

Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      +...+....++|++.++|++|+  ++.++++|++....+...+ ...++..+|+.++++++.+..||+|++|..+++++|
T Consensus        85 l~~~~~~~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~~~~~~-~~~~~~~~fd~v~~s~~~~~~KP~p~~f~~a~~~lg  161 (245)
T d1qq5a_          85 MAQAYNRLTPYPDAAQCLAELA--PLKRAILSNGAPDMLQALV-ANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEVLG  161 (245)
T ss_dssp             HHGGGGSCCBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHH-HHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHHHC
T ss_pred             HHhcccccccchhhhHHHHHHh--hhceeEEeccchHHHHHHH-hhcccccccccccccccccccCccHHHHHHHHHHhC
Confidence            3444556788999999999996  5689999999999888888 889999999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCc------------------------cccccccchhccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQ------------------------THRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~------------------------~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      ++|++|+||||+.+|+.+|+++|+.+|+++++...                        ......|+++++++.||...+
T Consensus       162 ~~p~e~l~VgD~~~di~~A~~aG~~tv~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~~l~el~~lv  241 (245)
T d1qq5a_         162 VTPAEVLFVSSNGFDVGGAKNFGFSVARVARLSQEALARELVSGTIAPLTMFKALRMREETYAEAPDFVVPALGDLPRLV  241 (245)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEECCSCHHHHHHHTTSSSCCHHHHHHHHHSSCCTTSCCCSEEESSGGGHHHHH
T ss_pred             CChhhEEEEeCCHHHHHHHHHcCCeEEEEcCCCcccccccccccccccchhhhhhhhhhhhccCCCCEEECCHHHHHHHH
Confidence            99999999999999999999999999999863210                        111345889999999988776


Q ss_pred             cC
Q 024956          219 WG  220 (260)
Q Consensus       219 ~~  220 (260)
                      .+
T Consensus       242 ~~  243 (245)
T d1qq5a_         242 RG  243 (245)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.7e-24  Score=163.27  Aligned_cols=201  Identities=11%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             cccEEEEecCCccccCHHH-------HHHHHHHHHHHcCCCCChhhh-hhccCCCHHHHHHHHHHHhCCCCCHHHHHHHH
Q 024956            8 LMSCVILDLDGTLLNTDGM-------FSEVLKTFLVKYGKEWDGREK-HKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEV   79 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (260)
                      ++++|+||+||||+|+...       ..+.+.+.+.+.+........ ..............+........... ....+
T Consensus         2 ~~~~~lfD~dGTl~d~~~v~d~lfp~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (225)
T d2g80a1           2 NYSTYLLDIEGTVCPISFVKETLFPYFTNKVPQLVQQDTRDSPVSNILSQFHIDNKEQLQAHILELVAKDVKDP-ILKQL   80 (225)
T ss_dssp             CCSEEEECCBTTTBCTHHHHHTHHHHHHHHHHHHHHSCCTTSHHHHHHHTTCCCCHHHHHHHHHHHHHTTCCCH-HHHHH
T ss_pred             CCCEEEEcCCCCCcccHhhhhhhhHHHHHHHHHHHHHhcCChHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhH-HHHHH
Confidence            6899999999999997421       122333333333322222222 22233333333222222221111111 11111


Q ss_pred             HH-----HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHH----------HhhcCCccccceEEecccc
Q 024956           80 YS-----MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKI----------SYQHGWNESFSVIVGSDEV  144 (260)
Q Consensus        80 ~~-----~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l----------~~~~gl~~~f~~i~~~~~~  144 (260)
                      ..     .+........+++++.+++..    +..+++.++..........          .+..++..+|+.+++++..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~Fd~v~~~~~~  156 (225)
T d2g80a1          81 QGYVWAHGYESGQIKAPVYADAIDFIKR----KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTS  156 (225)
T ss_dssp             HHHHHHHHHHTTSCCBCCCHHHHHHHHH----CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHH
T ss_pred             HHHHHHHHHHhhcccccchhhHHHHHhh----HHhhhhhhhccchhhhhhhhhhhhhHHHHHHhcCCccccceeeecccc
Confidence            11     122222234556666665543    3678888887665443222          0456888999999888654


Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDL  214 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l  214 (260)
                      . .||+|++|..+++++|++|++|+||||+.+|+.+|+++|+.++++++..........++.+++++.||
T Consensus       157 ~-~KP~p~~f~~~~~~lg~~p~e~l~VgD~~~Dv~~A~~aG~~ti~v~r~g~~~~~~~~~~~~i~~~~eL  225 (225)
T d2g80a1         157 G-KKTETQSYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRPGNAPVPDGQKYQVYKNFETL  225 (225)
T ss_dssp             C-CTTCHHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECCTTSCCCCSSCCSCEESCSTTC
T ss_pred             C-CCCChhHhHHHHHhcccCchhceeecCCHHHHHHHHHcCCEEEEEeCCCCCCCcccCCCCccCChhhC
Confidence            4 79999999999999999999999999999999999999999999987554444456677788888876

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.2e-24  Score=165.18  Aligned_cols=106  Identities=18%  Similarity=0.195  Sum_probs=93.8

Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhH----HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRATI----ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~----~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .....++|++.++|.+|+++|++++++||......    .... ...++..+|+.++++++.+..||+|+.|+.+++.+|
T Consensus        95 ~~~~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~-~~~~~~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~~  173 (225)
T d1zd3a1          95 ISARKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQ-LMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTLK  173 (225)
T ss_dssp             HHHCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHH-HHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHHT
T ss_pred             hhcCCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHh-hhcChHhhccEEEeccccccchhHHHHHHHHhhhcc
Confidence            34567899999999999999999999998755432    2222 455678899999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ++|++++||||+..|+.+|+++|+.+|++++
T Consensus       174 ~~p~e~l~VgD~~~Di~~A~~~G~~ti~v~~  204 (225)
T d1zd3a1         174 ASPSEVVFLDDIGANLKPARDLGMVTILVQD  204 (225)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHTTCEEEECSS
T ss_pred             cCccceeEEecCHHHHHHHHHcCCEEEEECC
Confidence            9999999999999999999999999999987

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=1.2e-24  Score=167.66  Aligned_cols=106  Identities=15%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             hccCCCCccHHHHHHHHHHCCCcEEEEeCCChH----hHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           87 LCKVKALPGANRLIKHLSCHGVPMALASNSHRA----TIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        87 ~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~----~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      .....++|++.++|..|+++|++++++|++...    .....+ ...++..+||.++++++++..||+|+.|+.++++++
T Consensus        93 ~~~~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~-~~~~l~~~fd~i~~s~~~~~~KP~p~~~~~~~~~~~  171 (222)
T d1cr6a1          93 MAARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQ-MMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDTLK  171 (222)
T ss_dssp             HHTCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHH-HHHHHGGGCSEEEEHHHHSCCTTCHHHHHHHHHHHT
T ss_pred             HhcCCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHH-HhcChHhhhceeeehhhccCCCCChHHHHHHHHHhC
Confidence            345778999999999999999999999985432    233344 667899999999999999999999999999999999


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ++|++++||||+..|+.+|+.+|+.+|++..
T Consensus       172 v~p~~~l~IgD~~~Di~~A~~aG~~ti~V~~  202 (222)
T d1cr6a1         172 AKPNEVVFLDDFGSNLKPARDMGMVTILVHN  202 (222)
T ss_dssp             SCTTSEEEEESSSTTTHHHHHHTCEEEECCS
T ss_pred             CCcceEEEEECCHHHHHHHHHcCCEEEEECC
Confidence            9999999999999999999999999999977

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.4e-23  Score=154.37  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh-HHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCc
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT-IESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSS  167 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~-~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~  167 (260)
                      .++++||+.++|++|+++|++++++|++.... .+..+ +.+++..+|+.+...     .||+++.+..+++++|++|++
T Consensus        44 ~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l-~~~~~~~~~~~~~~~-----~kp~~~~~~~~~~~~~~~~~~  117 (164)
T d1u7pa_          44 NIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLL-ELFDLGKYFIQREIY-----PGSKVTHFERLHHKTGVPFSQ  117 (164)
T ss_dssp             EECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHH-HHTTCGGGCSEEEES-----SSCHHHHHHHHHHHHCCCGGG
T ss_pred             ccccchHHHHHHHHHHHCCCcEEEEeccccchhhccch-hcccccccceeeecc-----cCCChHHHHHHHHHhCCChHH
Confidence            57899999999999999999999999887654 44455 888888888887654     679999999999999999999


Q ss_pred             EEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          168 SLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       168 ~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                      ++||||+..|+.+|+++|+.+|++.++..
T Consensus       118 ~l~igD~~~di~aA~~aG~~~i~v~~G~~  146 (164)
T d1u7pa_         118 MVFFDDENRNIIDVGRLGVTCIHIRDGMS  146 (164)
T ss_dssp             EEEEESCHHHHHHHHTTTCEEEECSSCCC
T ss_pred             EEEEcCCHHHHHHHHHcCCEEEEECCCCC
Confidence            99999999999999999999999988653

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.7e-23  Score=157.53  Aligned_cols=104  Identities=16%  Similarity=0.221  Sum_probs=95.5

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      ..+.+++.+++..++++|++++++|++........+....++..+|+.+++++..+..||+|++++.+++++|++|++|+
T Consensus        83 ~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~~~~~~~~~~~~~~~~~~l  162 (197)
T d2b0ca1          83 VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSDTV  162 (197)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             cccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccchhhccceeecccccccccchHHHHHHHHhcCCCCCeEE
Confidence            56889999999999999999999999988776666623347888999999999999999999999999999999999999


Q ss_pred             EEecCHhhHHHHHHcCCeEEEEcC
Q 024956          170 VIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ||||+++|+.+|+.+|+.+++++.
T Consensus       163 ~vgDs~~di~~A~~aG~~ti~v~~  186 (197)
T d2b0ca1         163 FFDDNADNIEGANQLGITSILVKD  186 (197)
T ss_dssp             EEESCHHHHHHHHTTTCEEEECCS
T ss_pred             EEeCCHHHHHHHHHcCCEEEEECC
Confidence            999999999999999999999987

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.1e-23  Score=161.37  Aligned_cols=141  Identities=13%  Similarity=0.110  Sum_probs=110.0

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce---EEec----------cccCCCCCChHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV---IVGS----------DEVRTGKPSPDIF  154 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~---i~~~----------~~~~~~kp~~~~~  154 (260)
                      ..++++|++.++++.|+++|++++++|++....++..+ +.+++..+|-.   .+..          ......++++..+
T Consensus        72 ~~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l-~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~  150 (226)
T d2feaa1          72 EDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLL-EGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCK  150 (226)
T ss_dssp             HHCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-TTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCH
T ss_pred             hccchhHHHHHHHHHHHhcccccccCCcchhhhHHHHH-HHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHH
Confidence            34679999999999999999999999999999999898 77887665521   1111          1223457788899


Q ss_pred             HHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccccCCCCCcccccC
Q 024956          155 LEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKWGLPPFQDWIEG  230 (260)
Q Consensus       155 ~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~l~~~~~~~~~  230 (260)
                      ..+++++++++++++||||+.+|+.||+.||+.++ .............+...++++.++...+..+...++|+.+
T Consensus       151 ~~~~~~~~~~~~~~i~iGDs~~Dl~~a~~A~~~~a-~~~~~~~~~~~~~~~~~~~d~~~i~~~l~~~~~~~~~~~~  225 (226)
T d2feaa1         151 PSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFA-RDYLLNECREQNLNHLPYQDFYEIRKEIENVKEVQEWLQN  225 (226)
T ss_dssp             HHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEE-CHHHHHHHHHTTCCEECCSSHHHHHHHHHTSHHHHHHHTC
T ss_pred             HHHHHHhcCCCceEEEEeCchhhHHHHHHCCEEEE-ecchHHHHHHcCCCeeecCCHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999997443 2221111222345577789999999999999999999864

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.5e-21  Score=148.66  Aligned_cols=194  Identities=13%  Similarity=0.103  Sum_probs=116.8

Q ss_pred             ccccccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhh-hc-cCC-CHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 024956            5 LKKLMSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKH-KI-VGK-TPLEEAAIIVEDYGLPCAKHEFVNEVYS   81 (260)
Q Consensus         5 ~~~~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (260)
                      ++...++|+|||||||++.+     ++..+...+|.......+. .. .|. ...+.+......+..  ...+.    .+
T Consensus         6 ~~~~~~aV~FD~DGTLi~~e-----~~~~l~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~----~~   74 (217)
T d1nnla_           6 LFYSADAVCFDVDSTVIREE-----GIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQP--SREQV----QR   74 (217)
T ss_dssp             HHHHCSEEEEETBTTTBSSC-----HHHHHHHHTTCTTTC------------CHHHHHHHHHHHHCC--CHHHH----HH
T ss_pred             hhCCCCEEEEcCccccCCcc-----HHHHHHHHcCChHHHHHHHHHHHcCCCCHHHHHHHHHHhccc--chHHH----HH
Confidence            34567899999999999974     3444555555432211111 11 111 112222222222211  11111    11


Q ss_pred             HHHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccc--cc--------eEEecccc----CCC
Q 024956           82 MFSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNES--FS--------VIVGSDEV----RTG  147 (260)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~--f~--------~i~~~~~~----~~~  147 (260)
                      ...+  ....++||+.+++++|+++|++++++|++....++..+ +.+|+..+  +.        ..+.....    ...
T Consensus        75 ~~~~--~~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~-~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~~  151 (217)
T d1nnla_          75 LIAE--QPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVA-SKLNIPATNVFANRLKFYFNGEYAGFDETQPTAES  151 (217)
T ss_dssp             HHHH--SCCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHTTCCGGGEEEECEEECTTSCEEEECTTSGGGST
T ss_pred             HHHh--hccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHH-HHhCCcccceeeeeeeeeehhccccceeeeeeecc
Confidence            1111  34678999999999999999999999999999999888 88998642  11        11111111    112


Q ss_pred             CCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccc
Q 024956          148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLR  215 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~  215 (260)
                      ..+...++.+++.  .+++++++||||.+|+.|++.+|+. +.++...........+++.+.++.||+
T Consensus       152 ~~K~~~v~~~~~~--~~~~~~~~vGDs~~Di~~~~~ag~~-va~~~~~~~~~~~~~ad~~i~~f~ell  216 (217)
T d1nnla_         152 GGKGKVIKLLKEK--FHFKKIIMIGDGATDMEACPPADAF-IGFGGNVIRQQVKDNAKWYITDFVELL  216 (217)
T ss_dssp             THHHHHHHHHHHH--HCCSCEEEEESSHHHHTTTTTSSEE-EEECSSCCCHHHHHHCSEEESCGGGGC
T ss_pred             chHHHHHHHHHhc--cCccccEEEEeCHhhHHHHHhCCce-EEECCCHHHHHHHHhCCCEeCCHHHhc
Confidence            2233455555444  4678999999999999999999986 445432223334567899999998875

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.3e-20  Score=140.46  Aligned_cols=129  Identities=21%  Similarity=0.239  Sum_probs=97.1

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChH---------------hHHHHHHhhcCCccccceEEec-----------c
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRA---------------TIESKISYQHGWNESFSVIVGS-----------D  142 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~---------------~~~~~l~~~~gl~~~f~~i~~~-----------~  142 (260)
                      ..+++||+.++|+.|+++|++++++||.+..               .+...+ ...+.. ..+..++.           +
T Consensus        25 ~~~~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~cp~~p~~~~~~~~~  102 (182)
T d2gmwa1          25 NFEFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSL-ADRDVD-LDGIYYCPHHPQGSVEEFRQ  102 (182)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHH-HHTTCC-CSEEEEECCBTTCSSGGGBS
T ss_pred             HeeECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhhhhhhh-hhhccc-ccceeecccccccccccccc
Confidence            3578999999999999999999999998631               111122 222321 11222222           3


Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeE-EEEcCCCCcccc-ccccchhcccccccccccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEV-VAVPSLPKQTHR-YTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~-i~~~~~~~~~~~-~~~~~~~v~~~~~l~~~~~  219 (260)
                      .+...||+|..+..+++++++++++++||||+.+|+.+|+++|+.+ +++..++..... ...++++++++.|+.+.+.
T Consensus       103 ~~~~rKP~p~m~~~~~~~~~i~~~~s~mVGDs~~Di~aA~~Ag~~~~~lv~~g~~~~~~~~~~ad~v~~~l~dl~~~ik  181 (182)
T d2gmwa1         103 VCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKPITPEAENAADWVLNSLADLPQAIK  181 (182)
T ss_dssp             CCSSSTTSCHHHHHHHHHHTBCGGGCEEEESSHHHHHHHHHTTCSEEEEESSSSCCCHHHHHHCSEEESCGGGHHHHHH
T ss_pred             cccccCCccccccchhhhcccccccccccCCCHHHHHHHHHhCCCcEEEECCCCCCCcccccCCCEEECCHHHHHHHhc
Confidence            4567899999999999999999999999999999999999999965 667665544333 4569999999999987653

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.83  E-value=4.5e-21  Score=145.87  Aligned_cols=126  Identities=18%  Similarity=0.192  Sum_probs=100.9

Q ss_pred             ccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec----------cccCCCCCChHHHHHH
Q 024956           88 CKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS----------DEVRTGKPSPDIFLEA  157 (260)
Q Consensus        88 ~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~----------~~~~~~kp~~~~~~~~  157 (260)
                      ....+.+++.+.++.+..+|..++++|+.....+.... ...+...++......          ......++++..+...
T Consensus        72 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (210)
T d1j97a_          72 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIK-EKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKI  150 (210)
T ss_dssp             HTCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHH-HHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHcCCEEEeecccccccccchh-hccchhhhhhhhhccccccccccccccccccccccchhhhH
Confidence            45688899999999999999999999999888887777 667766655444332          2334566778899999


Q ss_pred             HHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccc--cccccccc
Q 024956          158 AKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINS--LLDLRPEK  218 (260)
Q Consensus       158 l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~--~~~l~~~~  218 (260)
                      ++.++++++++++||||.||+.|++.+|+..++ +.   .+..++.|++++++  +.++++.+
T Consensus       151 ~~~~~~~~~~~i~iGDs~nDi~m~~~ag~~va~-na---~~~lk~~Ad~vi~~~d~~~vl~~l  209 (210)
T d1j97a_         151 AKIEGINLEDTVAVGDGANDISMFKKAGLKIAF-CA---KPILKEKADICIEKRDLREILKYI  209 (210)
T ss_dssp             HHHHTCCGGGEEEEESSGGGHHHHHHCSEEEEE-SC---CHHHHTTCSEEECSSCGGGGGGGC
T ss_pred             HHHhcccccceEEecCCcChHHHHHHCCCCEEE-CC---CHHHHHhCCEEEcCCCHHHHHHHh
Confidence            999999999999999999999999999997655 54   45667789999984  45666554

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.7e-21  Score=140.05  Aligned_cols=104  Identities=16%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCcc---ccceEEeccccCCCCCC
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNE---SFSVIVGSDEVRTGKPS  150 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~---~f~~i~~~~~~~~~kp~  150 (260)
                      +..++||+.++|+.|+++|++++++||.+.               ..+...+ ...|+..   +|+.....+++...||+
T Consensus        28 ~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~i~~~~~~~~~~~~~~KP~  106 (161)
T d2fpwa1          28 KLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF-TSQGVQFDEVLICPHLPADECDCRKPK  106 (161)
T ss_dssp             GCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHH-HHTTCCEEEEEEECCCGGGCCSSSTTS
T ss_pred             HceECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhc-cccccccceeeeccccccccccccccc
Confidence            467899999999999999999999999751               1223333 4444421   22222334566778999


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      |..+.+++++++++|++++||||+..|+++|+++|+++++++.
T Consensus       107 p~~~~~~~~~~~id~~~~~~IGD~~~Di~aA~~aG~~~i~i~~  149 (161)
T d2fpwa1         107 VKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDR  149 (161)
T ss_dssp             SGGGGGGC----CCGGGCEEEESSHHHHHHHHHHTSEEEECBT
T ss_pred             cHHHHHHHHhcCCChhcEEEECCCHHHHHHHHHcCCeEEEECC
Confidence            9999999999999999999999999999999999999999977

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.3e-21  Score=151.21  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=67.2

Q ss_pred             cceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhcc
Q 024956          135 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVIN  209 (260)
Q Consensus       135 f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~  209 (260)
                      ++.....+.....||+|..++.+++++|++|++++||||++ +|+.+|+++|+.++++.+|......    ...|+++++
T Consensus       163 ~~~~~~~~~~~~~KP~p~~~~~a~~~lgi~p~e~v~IGD~~~~DI~~a~~aG~~tilV~~G~~~~~~l~~~~~~pd~i~~  242 (250)
T d2c4na1         163 IEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLSGVSSLDDIDSMPFRPSWIYP  242 (250)
T ss_dssp             HHHHHCCCCEECSTTSTHHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESSSSCCGGGGSSCSSCCSEEES
T ss_pred             HHHhhcccchhcccchhhhHhhhhhhhcCCchheEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhCCCCCCEEEC
Confidence            34444555566789999999999999999999999999998 5999999999999999886444333    245799999


Q ss_pred             cccccc
Q 024956          210 SLLDLR  215 (260)
Q Consensus       210 ~~~~l~  215 (260)
                      |+.||.
T Consensus       243 sl~eL~  248 (250)
T d2c4na1         243 SVAEID  248 (250)
T ss_dssp             SGGGCC
T ss_pred             CHHHhC
Confidence            999975

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.81  E-value=7.1e-20  Score=138.86  Aligned_cols=105  Identities=21%  Similarity=0.346  Sum_probs=81.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEecc-----------
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGSD-----------  142 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~~-----------  142 (260)
                      +.+++||+.++|++|+++|++++++||.+.               ..+...+ ...|.  .++.++.+.           
T Consensus        46 ~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~~l-~~~g~--~~~~~~~~~~~~~~~~~~~~  122 (209)
T d2o2xa1          46 EIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELL-REEGV--FVDMVLACAYHEAGVGPLAI  122 (209)
T ss_dssp             GCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHH-HHTTC--CCSEEEEECCCTTCCSTTCC
T ss_pred             HeEecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHHHh-hhccc--ccceEEEecccccccccccc
Confidence            356899999999999999999999998541               1122233 33333  234443321           


Q ss_pred             -ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCC
Q 024956          143 -EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPK  196 (260)
Q Consensus       143 -~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~  196 (260)
                       ++.+.||+|..+..+++++++++++++||||+.+|+++|+++|+.++++..+..
T Consensus       123 ~~~~~rKP~p~ml~~a~~~~~i~~~~~~~VGD~~~Di~aA~~AGi~~i~v~~g~~  177 (209)
T d2o2xa1         123 PDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKLADMQAGKRAGLAQGWLVDGEA  177 (209)
T ss_dssp             SSCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSHHHHHHHHHTTCSEEEEETCCC
T ss_pred             cccccccccchhhhHhHHHhCCCccceEEeCCCHHHHHHHHHCCCcEEEEeCCCC
Confidence             334569999999999999999999999999999999999999999999877543

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.78  E-value=1e-19  Score=142.81  Aligned_cols=75  Identities=20%  Similarity=0.288  Sum_probs=62.5

Q ss_pred             eccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccc
Q 024956          140 GSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDL  214 (260)
Q Consensus       140 ~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l  214 (260)
                      +.+....+||+|..++.+++++|++|++++||||++ +|+.+|+++|+.+++|.+|....+.    ...|+++++|+.|+
T Consensus       172 ~~~~~~~gKP~p~~~~~al~~l~i~~~~~~mIGDs~~~DI~gA~~aG~~si~V~~G~~~~~~~~~~~~~PD~vi~sl~e~  251 (253)
T d1wvia_         172 RVKPIIIGKPEAVIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVTTGFTKPEEVPALPIQPDFVLSSLAEW  251 (253)
T ss_dssp             CCCCEECSTTSHHHHHHHHHHHTSCGGGEEEEESCTTTTHHHHHHTTCEEEEESSSSSCTTTGGGCSSCCSEEESCGGGC
T ss_pred             cceeEEeccCCcccceehhhhccccccceEEEcCChHHHHHHHHHCCCCEEEECCCCCCHHHHhhcCCCCCEEECCHHHc
Confidence            334445679999999999999999999999999998 5999999999999999886433322    34579999999886

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.7e-19  Score=141.01  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcccc----ccccchhccccccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQTHR----YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~~~----~~~~~~~v~~~~~l~~~~  218 (260)
                      ...+||+|..+..+++++|++|++++||||++ +||.+|+++|+.++++.+|......    ...|+++++++.||.+.+
T Consensus       181 ~~~~KP~p~~~~~a~~~l~~~~~~~lmVGD~~~~DI~ga~~aG~~si~V~~G~~~~~~~~~~~~~PD~ii~~l~eL~~~l  260 (261)
T d1vjra_         181 LIAGKPNPLVVDVISEKFGVPKERMAMVGDRLYTDVKLGKNAGIVSILVLTGETTPEDLERAETKPDFVFKNLGELAKAV  260 (261)
T ss_dssp             EECSTTSTHHHHHHHHHHTCCGGGEEEEESCHHHHHHHHHHHTCEEEEESSSSCCHHHHHHCSSCCSEEESSHHHHHHHH
T ss_pred             cccCCCcHHHHHHHHhhhccCchhcceecCChhHHHHHHHHCCCcEEEECCCCCCHHHHhhcCCCCCEEECCHHHHHHHh
Confidence            45689999999999999999999999999997 6999999999999999887544332    345799999999988765

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.76  E-value=1.7e-19  Score=141.49  Aligned_cols=80  Identities=21%  Similarity=0.262  Sum_probs=66.3

Q ss_pred             cceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHHHcCCeEEEEcCCCCcc----ccccccchhcc
Q 024956          135 FSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGKAAGMEVVAVPSLPKQT----HRYTAADEVIN  209 (260)
Q Consensus       135 f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~~~G~~~i~~~~~~~~~----~~~~~~~~~v~  209 (260)
                      ++...+.+....+||+|..+..+++++|++|++++||||++ +|+.+|+++|+.++++.+|....    .....|+++++
T Consensus       167 ~~~~~~~~~~~~~KP~~~~~~~~~~~~gi~~~~~l~IGD~~~~DI~~a~~aG~~si~V~~G~~~~~~~~~~~~~Pd~vi~  246 (253)
T d1yv9a1         167 VETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLPTPPTYVVD  246 (253)
T ss_dssp             HHHHHTCCCEECSTTSHHHHHHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEETTSSSCSSSTTTCSSCCSEEES
T ss_pred             ccccccceeeeecccchhHHHHHHHHhCCCccceEEecCChHHHHHHHHHCCCCEEEECCCCCCHHHHHhcCCCCCEEEC
Confidence            33444555667799999999999999999999999999998 59999999999999998764332    22456799999


Q ss_pred             ccccc
Q 024956          210 SLLDL  214 (260)
Q Consensus       210 ~~~~l  214 (260)
                      |+.|+
T Consensus       247 sl~e~  251 (253)
T d1yv9a1         247 SLDEW  251 (253)
T ss_dssp             SGGGC
T ss_pred             CHHHc
Confidence            99986

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=9.5e-17  Score=121.19  Aligned_cols=185  Identities=16%  Similarity=0.119  Sum_probs=118.6

Q ss_pred             ccEEEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCH---HHHHHH---HHHHhCCCCCHHHHHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTP---LEEAAI---IVEDYGLPCAKHEFVNEVYSM   82 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~   82 (260)
                      +|+|+|||||||++.      .|.++.++.|.....     ..|+..   .+.+..   ++...+..  .        ..
T Consensus         2 mkli~fDlDGTLl~e------~~~~~a~~~Gi~~~~-----~tgR~~~~~~~~~~~~v~ll~~~~~~--~--------~~   60 (206)
T d1rkua_           2 MEIACLDLEGVLVPE------IWIAFAEKTGIDALK-----ATTRDIPDYDVLMKQRLRILDEHGLK--L--------GD   60 (206)
T ss_dssp             CEEEEEESBTTTBCC------HHHHHHHHHTCGGGG-----CCTTTCCCHHHHHHHHHHHHHHTTCC--H--------HH
T ss_pred             cEEEEEcCccchHHH------HHHHHHHHcCCHHHH-----HHCCCCCCHHHHHHHHHHHHHhCCCc--e--------eh
Confidence            589999999999985      456666677754322     222221   111111   11111111  0        11


Q ss_pred             HHhhhccCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc----ccCCCCCChHHHHHHH
Q 024956           83 FSDHLCKVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD----EVRTGKPSPDIFLEAA  158 (260)
Q Consensus        83 ~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~----~~~~~kp~~~~~~~~l  158 (260)
                      +..........++....+..++ .+.+.+++|++......... ...+....+.......    ......+++......+
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (206)
T d1rkua_          61 IQEVIATLKPLEGAVEFVDWLR-ERFQVVILSDTFYEFSQPLM-RQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSV  138 (206)
T ss_dssp             HHHHHTTCCCCTTHHHHHHHHH-TTSEEEEEEEEEHHHHHHHH-HHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHH
T ss_pred             hhhhhhhccccchHHHHHHHhh-cCceEEEeccCchHHHHHHH-HHhCCchhhcceeeeecccccccccccchhhHHHHH
Confidence            2222345677888888887765 56899999999888777777 6666654443322211    1123444556778899


Q ss_pred             HHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-ccccchh-ccccccccccccC
Q 024956          159 KRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-YTAADEV-INSLLDLRPEKWG  220 (260)
Q Consensus       159 ~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~-v~~~~~l~~~~~~  220 (260)
                      +.++++++++++|||+.||++|++.+|+..++ +.   .... +..++++ ..+.+++.+.+.+
T Consensus       139 ~~~~i~~~eviaiGDg~NDi~Ml~~Ag~gIAm-na---~~~v~~~~~~~~~~~~~~d~~~~~~~  198 (206)
T d1rkua_         139 IAFKSLYYRVIAAGDSYNDTTMLSEAHAGILF-HA---PENVIREFPQFPAVHTYEDLKREFLK  198 (206)
T ss_dssp             HHHHHTTCEEEEEECSSTTHHHHHHSSEEEEE-SC---CHHHHHHCTTSCEECSHHHHHHHHHH
T ss_pred             HHhcccccceEEecCCccCHHHHHhCCccEEE-CC---CHHHHHhCCCceeecCHHHHHHHHHH
Confidence            99999999999999999999999999998776 54   2333 4556665 4678887766553

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.67  E-value=1.8e-16  Score=113.93  Aligned_cols=104  Identities=15%  Similarity=0.016  Sum_probs=74.6

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcC-----C-ccccceEEeccccCCCCCChHHHHHHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHG-----W-NESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~g-----l-~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ...++|++.++|+.|+++|+.++++||.+...   ....+ +..+     + ...++.... ...+..+|+.......+.
T Consensus        34 ~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~t~~~l-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~k~~~l~  111 (149)
T d1ltqa1          34 TDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYY-RMTRKWVEDIAGVPLVMQCQ-REQGDTRKDDVVKEEIFW  111 (149)
T ss_dssp             GCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHH-HHHHHHHHHTTCCCCSEEEE-CCTTCCSCHHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHhccCeEEEEecCcHHHHHHHHHHH-HHHhhhhhhcCCCcEEEeec-ccccccCCchHHHHHHHH
Confidence            46789999999999999999999999986432   12222 1110     1 112333333 333445667778888888


Q ss_pred             HcCCCCCc-EEEEecCHhhHHHHHHcCCeEEEEcCC
Q 024956          160 RLNMEPSS-SLVIEDSVIGVVAGKAAGMEVVAVPSL  194 (260)
Q Consensus       160 ~l~~~~~~-~~~vGD~~~Dv~~a~~~G~~~i~~~~~  194 (260)
                      ++..++.+ +++|||++.|+++|+.+|++++.+.+|
T Consensus       112 ~~~~~~~~i~~~igD~~~dv~a~~~~Gi~~~~V~~G  147 (149)
T d1ltqa1         112 KHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVASG  147 (149)
T ss_dssp             HHTTTTCEEEEEEECCHHHHHHHHHTTCCEEECSCC
T ss_pred             HhccCCCceEEEEcCCHHHHHHHHHCCCcEEEeCCC
Confidence            87776665 467899999999999999999999875

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.66  E-value=9.9e-17  Score=132.50  Aligned_cols=131  Identities=19%  Similarity=0.225  Sum_probs=109.6

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce--EEecc-----------ccCCCCCChHHHHHH
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV--IVGSD-----------EVRTGKPSPDIFLEA  157 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~--i~~~~-----------~~~~~kp~~~~~~~~  157 (260)
                      ++.|++.++|+.|+++|++++++||.....++..+ +.+|+..+|+.  +++.+           .....||+|..+..+
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~~~~a~~il-~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p~~~~~~  293 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPF-ENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIAA  293 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHHH
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHH-HHcCCcccCCcceEEecchhhhhhhhccccccccCCChHHHHHH
Confidence            35669999999999999999999999999999999 89999998864  44433           236789999999988


Q ss_pred             HHHc--------------CCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCcccc-----ccccchhccccccccccc
Q 024956          158 AKRL--------------NMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHR-----YTAADEVINSLLDLRPEK  218 (260)
Q Consensus       158 l~~l--------------~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~-----~~~~~~~v~~~~~l~~~~  218 (260)
                      +..+              +.++++|+||||+.||+.+|+.+|+.+|++.+|......     ...|+++++++.++...+
T Consensus       294 ~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Igv~~G~~g~~~~~el~~~~AD~ii~~~~el~~il  373 (380)
T d1qyia_         294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVINHLGELRGVL  373 (380)
T ss_dssp             HHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTBGGGHHHHHHTTCSEEESSGGGHHHHH
T ss_pred             HHHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEEEecCCCCcccHHHHHhCCCCEEECCHHHHHHHH
Confidence            8554              567889999999999999999999999999986554432     346999999999998887


Q ss_pred             cCCC
Q 024956          219 WGLP  222 (260)
Q Consensus       219 ~~l~  222 (260)
                      ..+.
T Consensus       374 ~~l~  377 (380)
T d1qyia_         374 DNLL  377 (380)
T ss_dssp             SCTT
T ss_pred             HHHH
Confidence            6543

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=6e-15  Score=113.09  Aligned_cols=66  Identities=17%  Similarity=0.064  Sum_probs=54.6

Q ss_pred             ccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          143 EVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       143 ~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      ..+...+++..++.++++++++++++++|||+.||+.|++.+|+.+++.+.   .+..+..+++++++.
T Consensus       146 i~~~~~~K~~al~~l~~~~~i~~~~~~~iGD~~NDi~ml~~ag~~vav~na---~~~~k~~A~~v~~~~  211 (230)
T d1wr8a_         146 VKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYKVAVAQA---PKILKENADYVTKKE  211 (230)
T ss_dssp             EECTTCCHHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHTTCSEECSSC
T ss_pred             EeeCCcCcchhhcccccccccchhheeeeecCccHHHHHHHCCeEEEECCC---CHHHHHhCCEEECCC
Confidence            345677889999999999999999999999999999999999986554333   566677888887653

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.44  E-value=2e-13  Score=108.06  Aligned_cols=64  Identities=20%  Similarity=0.131  Sum_probs=53.7

Q ss_pred             CCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          147 GKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       147 ~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +-.|..+++.+++.+|++++++++|||+.||+.|++.+|..+++-+.   .++.+..|++++++..+
T Consensus       211 ~~~K~~ai~~l~~~~gi~~~~vi~~GD~~ND~~Ml~~a~~svam~na---~~~~k~~A~~v~~~~~~  274 (285)
T d1nrwa_         211 KASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGKGVAMGNA---REDIKSIADAVTLTNDE  274 (285)
T ss_dssp             TCSHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSSEEEECTTC---CHHHHHHCSEECCCGGG
T ss_pred             cchhhhHHHHHHhhcccCcccEEEEeCCHHHHHHHHhCCeEEEeCCC---CHHHHHhCCEEcCCCCc
Confidence            34678999999999999999999999999999999999987665554   56667888888876543

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.44  E-value=2.1e-15  Score=115.69  Aligned_cols=64  Identities=14%  Similarity=0.027  Sum_probs=51.2

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      +....+..+++.++++++++++++++|||+.||+.|++.+|+..++-+.   .+..+..+++++++-
T Consensus       147 ~~~~~K~~ai~~l~~~~~i~~~~v~~~GDs~nD~~m~~~a~~~vav~na---~~~~k~~ad~v~~~~  210 (225)
T d1l6ra_         147 NRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKACPANA---TDNIKAVSDFVSDYS  210 (225)
T ss_dssp             ETTCSHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHTSSSEEEECTTS---CHHHHHHCSEECSCC
T ss_pred             CCccchHHHHHHHhhhhccchhheeeecCCcchHHHHHHCCeEEEECCC---cHHHHHhCCEEECCC
Confidence            4455667899999999999999999999999999999999976544333   455567788777654

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=1.9e-13  Score=107.36  Aligned_cols=63  Identities=19%  Similarity=0.118  Sum_probs=52.5

Q ss_pred             CCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          148 KPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       148 kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      -.|..+++.+++.++++++++++|||+.||+.|++.+|..+++-+.   .++.+..+++++++..+
T Consensus       196 ~~K~~al~~l~~~~~i~~~~ii~~GD~~ND~~ml~~~~~~~am~na---~~~lk~~a~~i~~~~~~  258 (271)
T d1rkqa_         196 VNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNA---IPSVKEVANFVTKSNLE  258 (271)
T ss_dssp             CSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHHHCSEECCCTTT
T ss_pred             CCcccccceehhhcccchhcEEEEeCcHhHHHHHHhCCcEEEeCCC---CHHHHHhCCEEcCCCCc
Confidence            3466899999999999999999999999999999999987665543   56667788888876554

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=5.3e-13  Score=104.70  Aligned_cols=67  Identities=18%  Similarity=0.104  Sum_probs=56.2

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+-.|..+++.++++++++++++++|||+.||+.|++.+|..+++-+.   .++.+..|++++++..+
T Consensus       185 ~~~~~~K~~ai~~l~~~~~i~~~~vva~GD~~ND~~ml~~~~~sva~~na---~~~~k~~A~~i~~~~~~  251 (267)
T d1nf2a_         185 VPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENA---IEKVKEASDIVTLTNND  251 (267)
T ss_dssp             ECTTCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSEEEECTTS---CHHHHHHCSEECCCTTT
T ss_pred             cCCCCchhHHHHHHHHhhccCcccEEEEcCCcchHHHHHhCCcEEEeCCC---CHHHHHhCCEEcCCCCc
Confidence            34556678999999999999999999999999999999999986554433   56678889999887765

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=5.2e-13  Score=104.76  Aligned_cols=66  Identities=15%  Similarity=0.039  Sum_probs=55.4

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      +.+-.|..+++.+++++|++++++++|||+.||++|++.+|..+++-|.   .+..+..|++++.+..+
T Consensus       186 p~~~sK~~al~~l~~~lgi~~~~vi~~GD~~ND~~Ml~~ag~~vam~Na---~~~lk~~A~~v~~~~~~  251 (269)
T d1rlma_         186 IPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNA---AENIKQIARYATDDNNH  251 (269)
T ss_dssp             CTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCSEEEECTTC---CHHHHHHCSEECCCGGG
T ss_pred             cCchHHHHHHHHHhhhhccccccEEEEcCCcchHHHHHhCCeEEEeCCC---CHHHHHhCCEEcCCCCc
Confidence            3445678999999999999999999999999999999999987776555   56668888888887554

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=99.33  E-value=1.3e-12  Score=95.52  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             HHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhH
Q 024956           99 LIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGV  178 (260)
Q Consensus        99 ~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv  178 (260)
                      .+..|++.|+.++++|+.....+.... ..+++..    ++.     ..+++...++.+++++++++++++||||+.||+
T Consensus        40 gi~~l~~~gi~~~iis~~~~~~v~~~~-~~l~~~~----~~~-----~~~~K~~~l~~~~~~~~i~~~~v~~vGDd~nDl  109 (177)
T d1k1ea_          40 GIKMLMDADIQVAVLSGRDSPILRRRI-ADLGIKL----FFL-----GKLEKETACFDLMKQAGVTAEQTAYIGDDSVDL  109 (177)
T ss_dssp             HHHHHHHTTCEEEEEESCCCHHHHHHH-HHHTCCE----EEE-----SCSCHHHHHHHHHHHHTCCGGGEEEEECSGGGH
T ss_pred             HHHHHhhhcEEEEEecCCchhHHHHHH-hhhcccc----ccc-----ccccHHHHHHHHHHHhcCCcceeEEecCCccHH
Confidence            577888899999999999988888777 6666532    222     144566889999999999999999999999999


Q ss_pred             HHHHHcCCeEEEEcCCCCccccccccchhccc
Q 024956          179 VAGKAAGMEVVAVPSLPKQTHRYTAADEVINS  210 (260)
Q Consensus       179 ~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~  210 (260)
                      ++.+.+|+..+..+.   .+..+..++++.++
T Consensus       110 ~~l~~~g~siap~nA---~~~vk~~A~~Vt~~  138 (177)
T d1k1ea_         110 PAFAACGTSFAVADA---PIYVKNAVDHVLST  138 (177)
T ss_dssp             HHHHHSSEEEECTTS---CHHHHTTSSEECSS
T ss_pred             HHHhhCCeEEEcCCc---cHHHHHhCCEEeCC
Confidence            999999987665544   56667778877776

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4e-11  Score=88.57  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCcc--ccceEEeccccCCCCCChHHHHHHHHHcCCC
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNE--SFSVIVGSDEVRTGKPSPDIFLEAAKRLNME  164 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~--~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~  164 (260)
                      ..+.||+.++++.++++|++++.+||+....   ....|.+.+|+..  .-+.++..+.  ..|..   -+..++++++ 
T Consensus        85 A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p~~~~~~vll~~~~--~~K~~---rr~~Ik~y~I-  158 (209)
T d2b82a1          85 SIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDK--PGQNT---KSQWLQDKNI-  158 (209)
T ss_dssp             CEECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCCTTTBCCCEECCCC--TTCCC---SHHHHHHTTE-
T ss_pred             cCcchhHHHHHHHHHHcCCeEEEEeCCchhhHHHHHHHHHHHcCCCcccccceEeeCCC--CCchH---HHHHHHHcCe-
Confidence            5678899999999999999999999986543   4445534467642  2233444322  12222   3455566766 


Q ss_pred             CCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          165 PSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       165 ~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                         ++++||+.+|+.+|+.+|+..|-+-+
T Consensus       159 ---~l~~GD~l~Df~aA~eagi~~iRi~r  184 (209)
T d2b82a1         159 ---RIFYGDSDNDITAARDVGARGIRILR  184 (209)
T ss_dssp             ---EEEEESSHHHHHHHHHTTCEEEECCC
T ss_pred             ---EEEecCCHHHHhHHHHcCCCceEeec
Confidence               79999999999999999999998866

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=4.9e-12  Score=97.31  Aligned_cols=48  Identities=6%  Similarity=-0.120  Sum_probs=41.2

Q ss_pred             CCCCChHHHHHHHHHcC-CCCCcEEEEecCHhhHHHHHHcCCeEEEEcC
Q 024956          146 TGKPSPDIFLEAAKRLN-MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~-~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      ..-.+..++..+++.++ ++++++++|||+.||++|.+.+|..+++-|.
T Consensus       176 ~~~~K~~al~~l~~~~~~~~~~~~~a~GD~~ND~~Ml~~a~~~va~~Na  224 (243)
T d1wzca1         176 GNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGSL  224 (243)
T ss_dssp             CSCCHHHHHHHHHHHHHTTSCEEEEEEECSGGGHHHHTTSSEEEEESSC
T ss_pred             hhhccHHHHHHHHHHhcCCCcccEEEEcCCHhHHHHHHcCCcEEEeCCC
Confidence            44556788999999984 8889999999999999999999988777665

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.17  E-value=1.6e-11  Score=95.61  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=54.3

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLD  213 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~  213 (260)
                      .+.+-.|..+++.++++++++++++++|||+.||+.|.+.+|..+++-|.   .+..+..+++++.+..+
T Consensus       181 ~p~~~sK~~al~~l~~~~~i~~~~~~a~GD~~ND~~Ml~~a~~svav~na---~~~lk~~A~~vt~~~~~  247 (260)
T d2rbka1         181 TAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQA---KEDVKAAADYVTAPIDE  247 (260)
T ss_dssp             ESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS---CHHHHHHSSEECCCGGG
T ss_pred             EeCCCCHHHHHHHHHHhccccHhheeEecCCcccHHHHHhCCeEEEeCCC---CHHHHHhCCEEeCCCCc
Confidence            34556678999999999999999999999999999999999986554443   56667778887776543

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=7e-11  Score=89.90  Aligned_cols=45  Identities=9%  Similarity=-0.022  Sum_probs=35.6

Q ss_pred             CCCCChHHHHHHHH---HcCCCCCcEEEEecCHhhHHHHHHcCCeEEE
Q 024956          146 TGKPSPDIFLEAAK---RLNMEPSSSLVIEDSVIGVVAGKAAGMEVVA  190 (260)
Q Consensus       146 ~~kp~~~~~~~~l~---~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~  190 (260)
                      ....+....+.+++   +++++++++++|||+.||+.|++.+|+..++
T Consensus       181 ~~~~K~~~~~~l~~~~~~l~i~~~~~iafGD~~NDl~Ml~~a~~~vaV  228 (232)
T d1xvia_         181 ASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIV  228 (232)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHSSCCEEEEEESSGGGHHHHHTSSEEEEC
T ss_pred             CCchHHHHHHHHHHHHHHcCCChhcEEEEcCCHhHHHHHHhCCeEEEE
Confidence            34455566666654   5789999999999999999999999986543

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=99.13  E-value=4e-11  Score=94.24  Aligned_cols=64  Identities=13%  Similarity=0.046  Sum_probs=52.7

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccc
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSL  211 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~  211 (260)
                      +....+...+..+++.++++++++++|||+.||+.|++.+|..+++-+.   .+..+..+++++.+-
T Consensus       203 ~~~~~K~~~l~~l~~~~~i~~~~vi~~GD~~ND~~Ml~~a~~~va~~na---~~~~k~~a~~v~~~~  266 (283)
T d2b30a1         203 KLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAVANA---TDSAKSHAKCVLPVS  266 (283)
T ss_dssp             ETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSEEEECTTC---CHHHHHHSSEECSSC
T ss_pred             CCcchhHHHHHHHhhhcccccceEEEecCChhhHHHHHhCCcEEEeCCC---CHHHHHhCCEEECCc
Confidence            4556678999999999999999999999999999999999987665443   566677788877643

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=5.8e-10  Score=87.41  Aligned_cols=96  Identities=19%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEec------cc--------cCCCCCChHHH
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGS------DE--------VRTGKPSPDIF  154 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~------~~--------~~~~kp~~~~~  154 (260)
                      .+.+.||+.++++.|+++|++++|+|++....++..+ +.+|+...--.+++-      +.        ......+....
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl-~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~  211 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVI-RQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGA  211 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHH-HHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHH-HHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccCcchh
Confidence            4789999999999999999999999999999999999 777765311123321      10        11111122233


Q ss_pred             HHHHHH--cCCCCCcEEEEecCHhhHHHHHHcC
Q 024956          155 LEAAKR--LNMEPSSSLVIEDSVIGVVAGKAAG  185 (260)
Q Consensus       155 ~~~l~~--l~~~~~~~~~vGD~~~Dv~~a~~~G  185 (260)
                      ......  ..-+.++++++|||.+|+.||..+.
T Consensus       212 ~~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~  244 (291)
T d2bdua1         212 LKNTDYFSQLKDNSNIILLGDSQGDLRMADGVA  244 (291)
T ss_dssp             HTTHHHHHHTTTCCEEEEEESSSGGGGTTTTCS
T ss_pred             hhhHHHHhccCCcCcEEEEeCCHhHHHHHhCCc
Confidence            332232  2235678999999999999998764

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.3e-09  Score=79.57  Aligned_cols=176  Identities=15%  Similarity=0.173  Sum_probs=100.1

Q ss_pred             EEEecCCccccCHHHHHHHHHHHHHHcCCCCChhhhhhccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--hhcc
Q 024956           12 VILDLDGTLLNTDGMFSEVLKTFLVKYGKEWDGREKHKIVGKTPLEEAAIIVEDYGLPCAKHEFVNEVYSMFSD--HLCK   89 (260)
Q Consensus        12 vifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~   89 (260)
                      |++||||||+|+...+...+.   +.++.... ..................         .++..+.+...+..  .+..
T Consensus         6 I~iDmDGVL~Df~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~e~~~~~~~~~~~~~ff~~   72 (195)
T d1q92a_           6 VLVDMDGVLADFEGGFLRKFR---ARFPDQPF-IALEDRRGFWVSEQYGRL---------RPGLSEKAISIWESKNFFFE   72 (195)
T ss_dssp             EEECSBTTTBCHHHHHHHHHH---HHCTTSCC-CCGGGCCSSCHHHHHHHH---------STTHHHHHHHHHTSTTTTTT
T ss_pred             EEEECCCccccCHHHHHHHHH---HHcCCccc-cChhhhccchhHHHhCCC---------cHHHHHHHHHHhhhhhHHhh
Confidence            889999999998765544333   23332211 111111111111111000         01223333333332  3567


Q ss_pred             CCCCccHHHHHHHHHHCC-CcEEEEeCCChHh---H---HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcC
Q 024956           90 VKALPGANRLIKHLSCHG-VPMALASNSHRAT---I---ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLN  162 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g-~~i~i~s~~~~~~---~---~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~  162 (260)
                      +++.||+.+++++|++.+ +.+.++|......   .   ..-+.+.++-......+++.+     |.          .+.
T Consensus        73 L~p~~gA~e~l~~L~~~~~~~v~i~t~~~~~~~~~~~~k~~Wl~~~~~~~~~~~~~~t~~-----K~----------~~~  137 (195)
T d1q92a_          73 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRD-----KT----------VVS  137 (195)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHHCGGGGGGEEECSC-----ST----------TSC
T ss_pred             CCcccCHHHHHHHHhhccCccceEEccccccCcchHHHHHHHHHHhcCCCCccEEEEccc-----cc----------eec
Confidence            899999999999999865 4677888765321   1   123424334333223444332     21          111


Q ss_pred             CCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcccccccccccc
Q 024956          163 MEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEKW  219 (260)
Q Consensus       163 ~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~  219 (260)
                      .    -++|+|++..+..+..+|+.+++++.++++..........+.++.|..+.++
T Consensus       138 ~----d~lIDD~p~n~~~~~~~g~~~il~~~~~N~~~~~~~~~~Rv~~W~e~~~~il  190 (195)
T d1q92a_         138 A----DLLIDDRPDITGAEPTPSWEHVLFTACHNQHLQLQPPRRRLHSWADDWKAIL  190 (195)
T ss_dssp             C----SEEEESCSCCCCSCSSCSSEEEEECCTTTTTCCCCTTCEEECCTTSCHHHHH
T ss_pred             C----eEEecCcHHHHHHHhcCCCeEEEECCCcccCCCCCCCceeeCCHHHHHHHHH
Confidence            1    2899999999999999999999998876665433344567888888655543

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.98  E-value=2.3e-09  Score=82.24  Aligned_cols=59  Identities=20%  Similarity=0.123  Sum_probs=47.1

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccch
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADE  206 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~  206 (260)
                      +....|..+++.+++.+|++++++++|||+.||+.|.+.+|..+++-|.   .+..+..++.
T Consensus       158 ~~~~~K~~a~~~l~~~~gi~~~~~v~~GD~~ND~~Ml~~~~~~vav~na---~~~lk~~a~~  216 (244)
T d1s2oa1         158 PQRSNKGNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGVIVRNA---QPELLHWYDQ  216 (244)
T ss_dssp             ETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHTSSSEEEECTTC---CHHHHHHHHH
T ss_pred             eCccchhHHHHHHHHhccCChhhEEEEcCCCCCHHHHhhCCcEEEeCCC---CHHHHHHhhc
Confidence            3455677999999999999999999999999999999999976655444   4555555543

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.2e-08  Score=74.93  Aligned_cols=95  Identities=16%  Similarity=0.287  Sum_probs=75.4

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCCh--------HhH----HHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHH
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHR--------ATI----ESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAK  159 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~--------~~~----~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~  159 (260)
                      ++|++.+.|+.|.+.|+.++|+||.+.        +.+    ...+ +.++..  +...++.....+.||++..+..+++
T Consensus        51 l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~s~~~~~~~~~~i~-~~l~~~--~~i~~~~~~~~~RKP~~GM~~~~~~  127 (195)
T d1yj5a1          51 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVL-EKLGVP--FQVLVATHAGLNRKPVSGMWDHLQE  127 (195)
T ss_dssp             SCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSSCHHHHHHHHHHHH-HHHTSC--CEEEEECSSSSSSTTSTHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhCCcEEEEecCcchhccCCcCHHHHHHHHHHHH-HHcCCC--ccEEEecCccccCCCccHHHHHHHH
Confidence            479999999999999999999999732        112    2222 444543  3555666677789999999999999


Q ss_pred             HcC----CCCCcEEEEecCH-----------------hhHHHHHHcCCeEE
Q 024956          160 RLN----MEPSSSLVIEDSV-----------------IGVVAGKAAGMEVV  189 (260)
Q Consensus       160 ~l~----~~~~~~~~vGD~~-----------------~Dv~~a~~~G~~~i  189 (260)
                      +++    ++.++++||||..                 .|+..|+++|+++.
T Consensus       128 ~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~~~D~S~sD~~fA~N~gikF~  178 (195)
T d1yj5a1         128 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFA  178 (195)
T ss_dssp             TSSSSCCCCGGGCEEECSCCCBCTTSBTTBCSCCSCCHHHHHHHHHTCCEE
T ss_pred             HhcccccCCcCceEEEeCccCccccccccccccCcchhHHHHHHHCCCccc
Confidence            975    8889999999953                 89999999999865

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.82  E-value=9.8e-09  Score=70.95  Aligned_cols=102  Identities=13%  Similarity=0.156  Sum_probs=71.2

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEEE
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLV  170 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~  170 (260)
                      ++.|++.+.++.|++.|++++++|+.......... +.+|+..    +++.       -.|+-....++++.-. ..++|
T Consensus        21 ~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia-~~lgI~~----v~~~-------~~p~~k~~~v~~~q~~-~~v~~   87 (135)
T d2b8ea1          21 TLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-RELNLDL----VIAE-------VLPHQKSEEVKKLQAK-EVVAF   87 (135)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHHTCSE----EECS-------CCHHHHHHHHHHHTTT-SCEEE
T ss_pred             CCCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHH-hhhhhhh----hccc-------cchhHHHHHHHHHHcC-CEEEE
Confidence            57899999999999999999999999888888776 8888743    3321       2234445555665543 57999


Q ss_pred             EecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhc
Q 024956          171 IEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVI  208 (260)
Q Consensus       171 vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v  208 (260)
                      +||+.||..+.+.+++...+.+.   ....+..++.++
T Consensus        88 vGDg~nD~~aL~~Advgia~~~~---~~~~~~aADivl  122 (135)
T d2b8ea1          88 VGDGINDAPALAQADLGIAVGSG---SDVAVESGDIVL  122 (135)
T ss_dssp             EECSSSSHHHHHHSSEEEEECCC-----------SEEE
T ss_pred             EeCCCCcHHHHHhCCeeeecCcc---CHHHHHhCCEEE
Confidence            99999999999999987554332   233355566555

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=98.78  E-value=2.6e-07  Score=75.74  Aligned_cols=103  Identities=15%  Similarity=0.125  Sum_probs=78.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhc--------CCccccceEEeccc-----------------cC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQH--------GWNESFSVIVGSDE-----------------VR  145 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~--------gl~~~f~~i~~~~~-----------------~~  145 (260)
                      ...|.+..+|.+|++.|.++.++||+...++...+.-.+        .|..+||.|+....                 .+
T Consensus       185 ~k~~~l~~~L~~lr~~GKklFLiTNS~~~y~~~~m~y~~~~~~~~g~dWr~lFDvVIv~A~KP~FF~~~~~~~~v~~~~g  264 (458)
T d2bdea1         185 IREKEVVEGLKHFIRYGKKIFILTNSEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENG  264 (458)
T ss_dssp             ECCHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHGGGSCTTCCGGGTEEEEEESCCHHHHHHSCCCEEEECTTTC
T ss_pred             cCChhHHHHHHHHHHcCCeEEEEecCcHHHHHHHhhhhcccCCCCCCChHHhceEEEeCCCCCCccCCCCcceEEeCCCC
Confidence            446889999999999999999999999999876663334        57789999887421                 00


Q ss_pred             -------CCCCC---hHHHHHHHHHcCCCCCcEEEEecCH-hhHHHHH-HcCCeEEEEcC
Q 024956          146 -------TGKPS---PDIFLEAAKRLNMEPSSSLVIEDSV-IGVVAGK-AAGMEVVAVPS  193 (260)
Q Consensus       146 -------~~kp~---~~~~~~~l~~l~~~~~~~~~vGD~~-~Dv~~a~-~~G~~~i~~~~  193 (260)
                             ..++.   ......+.+.+|...++++||||+. .||...+ ..|+.++++..
T Consensus       265 ~l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~Ii~  324 (458)
T d2bdea1         265 TMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALVVE  324 (458)
T ss_dssp             CEEECCSCCCSEEEEECCHHHHHHHTTCCGGGEEEEESSCCSCHHHHHHHHCSEEEEECT
T ss_pred             ccccCCccccCCccccCCHHHHHHHhCCCCCcEEEECCccchhhhhhhhhcCCceEEehH
Confidence                   00110   1235677788899989999999999 8977775 68999999976

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.75  E-value=3.5e-09  Score=79.99  Aligned_cols=65  Identities=11%  Similarity=0.031  Sum_probs=45.5

Q ss_pred             cCCCCCChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhccccccccccc
Q 024956          144 VRTGKPSPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVINSLLDLRPEK  218 (260)
Q Consensus       144 ~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~~~~~l~~~~  218 (260)
                      .+.+-.|..+++.++++     +++++|||+.||+.|.+.+|..+...+. ..    +..|.+.+++..|+..++
T Consensus       154 ~p~g~~Kg~al~~l~~~-----~~~i~~GDs~ND~~Mf~~~~~~~av~~g-~~----~~~A~~~~~~~~ev~~~l  218 (229)
T d1u02a_         154 RVPGVNKGSAIRSVRGE-----RPAIIAGDDATDEAAFEANDDALTIKVG-EG----ETHAKFHVADYIEMRKIL  218 (229)
T ss_dssp             ECTTCCHHHHHHHHHTT-----SCEEEEESSHHHHHHHHTTTTSEEEEES-SS----CCCCSEEESSHHHHHHHH
T ss_pred             ecCCCCHHHHHHHHhcc-----ccceeecCCCChHHHHhccCCeEEEEeC-CC----CccCeEEcCCHHHHHHHH
Confidence            34455566777777653     6899999999999999999875443332 21    246778888887765544

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1e-08  Score=78.03  Aligned_cols=45  Identities=9%  Similarity=-0.151  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHHHHcCCCCCcEEEEec----CHhhHHHHHHcCCeEEEEcC
Q 024956          146 TGKPSPDIFLEAAKRLNMEPSSSLVIED----SVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       146 ~~kp~~~~~~~~l~~l~~~~~~~~~vGD----~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      .+-.|..+++++   ++++++++++|||    +.||++|.+.+|...++++.
T Consensus       182 ~~vsKg~al~~l---~~~~~~ev~afGD~~~~g~NDi~Ml~~~g~~~~~v~~  230 (243)
T d2amya1         182 DGWDKRYCLRHV---ENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTA  230 (243)
T ss_dssp             TTCSGGGGGGGT---TTSCCSEEEEEECSCC---CCCHHHHCTTEEEEECSS
T ss_pred             cccCHHHHHHHH---hCCCcceEEEEcCCCCCCCCcHHHHHccCCcEEEeCC
Confidence            344445566555   3678999999999    56999999999977777765

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=9.6e-08  Score=72.31  Aligned_cols=46  Identities=7%  Similarity=-0.182  Sum_probs=36.5

Q ss_pred             CCCCCChHHHHHHHHHcCCCCCcEEEEecCH----hhHHHHHHcCCeEEEEcC
Q 024956          145 RTGKPSPDIFLEAAKRLNMEPSSSLVIEDSV----IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       145 ~~~kp~~~~~~~~l~~l~~~~~~~~~vGD~~----~Dv~~a~~~G~~~i~~~~  193 (260)
                      ...-.|..+++.+++   .+++++++|||+.    ||++|.+.+|...+.+..
T Consensus       181 ~~~vsKg~al~~L~~---~~~~ev~afGD~~~~G~ND~eml~~a~~~~~av~n  230 (244)
T d2fuea1         181 PEGWDKRYCLDSLDQ---DSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVS  230 (244)
T ss_dssp             ETTCSTTHHHHHHTT---SCCSEEEEEESCCSTTSTTHHHHHSTTSEEEECSS
T ss_pred             chhccHHHHHHHHhc---CChhhEEEEcCCCCCCCCcHHHHHcCCCcEEEcCC
Confidence            345566788887764   4889999999975    999999999976666654

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.35  E-value=5.7e-07  Score=64.37  Aligned_cols=115  Identities=14%  Similarity=0.033  Sum_probs=76.4

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccce----EEeccc----------------cCCCCCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSV----IVGSDE----------------VRTGKPS  150 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~----i~~~~~----------------~~~~kp~  150 (260)
                      ++.|++.+.++.|++.|++++++|+.+........ +..|+...-..    .+....                .....-.
T Consensus        20 p~R~~~~~~I~~l~~~GI~v~miTGD~~~tA~~ia-~~~Gi~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ar~~   98 (168)
T d1wpga2          20 PPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAIC-RRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVE   98 (168)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHH-HHTTSSCTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESCC
T ss_pred             CCchhHHHHHHHHHHCcCEEEEECCCCHHHHHHHH-HHcCCCCCccccccccccccccchhhHHHHhhhhhhhhhhhccc
Confidence            57799999999999999999999999998888777 77887432111    111100                0122234


Q ss_pred             hHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHcCCeEEEEcCCCCccccccccchhcc
Q 024956          151 PDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAAGMEVVAVPSLPKQTHRYTAADEVIN  209 (260)
Q Consensus       151 ~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~G~~~i~~~~~~~~~~~~~~~~~~v~  209 (260)
                      |+-...+++.+.-.-..+.|+||+.||..+.+.+.+...+ ..+  ....+..++.++.
T Consensus        99 p~~K~~lv~~l~~~g~~Va~vGDG~nD~~AL~~AdvGIa~-~~g--t~~a~~aAdivl~  154 (168)
T d1wpga2          99 PSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAM-GSG--TAVAKTASEMVLA  154 (168)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSSEEEEE-TTS--CHHHHHTCSEEET
T ss_pred             hhHHHHHHHHHHhcccceeEEecCCCCHHHHHhCCEEEEe-ccc--cHHHHHhCCEEEc
Confidence            4555555555554456799999999999999999976544 331  2222445555543

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=97.95  E-value=1.1e-05  Score=54.03  Aligned_cols=49  Identities=10%  Similarity=0.123  Sum_probs=37.1

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCCh---------------HhHHHHHHhhcCCccccceEEec
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHR---------------ATIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~---------------~~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      ..|.+++.+.++.|++.|+.++++|++..               ......| +.+|+.  +|.++.+
T Consensus        23 ~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL-~~~gI~--Yd~Li~g   86 (124)
T d1xpja_          23 VLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWL-DKHQVP--YDEILVG   86 (124)
T ss_dssp             CCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHH-HHTTCC--CSEEEEC
T ss_pred             cCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHH-HHcCCC--ceEEEEC
Confidence            46889999999999999999999998841               2344556 667773  4776653

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.58  E-value=6.4e-05  Score=50.22  Aligned_cols=40  Identities=18%  Similarity=0.118  Sum_probs=31.7

Q ss_pred             CCCccHHHHHHHHHHCCCcEEEEeCCChHhHHH---HHHhhcCC
Q 024956           91 KALPGANRLIKHLSCHGVPMALASNSHRATIES---KISYQHGW  131 (260)
Q Consensus        91 ~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~---~l~~~~gl  131 (260)
                      ++.|++.+.|+.|++.|+.++++|++.......   .| ...|+
T Consensus        21 kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL-~~~~i   63 (122)
T d2obba1          21 EEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWC-RARGL   63 (122)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHH-HTTTC
T ss_pred             cccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHHHH-HHcCC
Confidence            578999999999999999999999997765433   33 44454

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00015  Score=52.03  Aligned_cols=92  Identities=11%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccccCCCCCChHHHHHHHHHcCCCCCcEE
Q 024956           90 VKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDEVRTGKPSPDIFLEAAKRLNMEPSSSL  169 (260)
Q Consensus        90 ~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~  169 (260)
                      +...||+.++|+.+.+. +.++|+|.+...++...+ +...-...+......+.+......   +.+-++.++.+.++++
T Consensus        54 v~~RP~l~eFL~~l~~~-yei~I~Ta~~~~YA~~il-~~ldp~~~~~~~~~r~~c~~~~~~---~~KdL~~l~~~l~~vv  128 (181)
T d1ta0a_          54 VLKRPHVDEFLQRMGEL-FECVLFTASLAKYADPVA-DLLDKWGAFRARLFRESCVFHRGN---YVKDLSRLGRDLRRVL  128 (181)
T ss_dssp             EEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHH-HHHCSSCCEEEEECGGGSEEETTE---EECCGGGSCSCGGGEE
T ss_pred             EecCCCHHHHHHHHHhc-eEEEEEcCCcHHHHHHHH-HHhccCCceeEEEEeeeeeecCCc---ccccHhhcCCCHHHeE
Confidence            56799999999999988 999999999999999988 777666666666555443322211   1234566788889999


Q ss_pred             EEecCHhhHHHHHHcCC
Q 024956          170 VIEDSVIGVVAGKAAGM  186 (260)
Q Consensus       170 ~vGD~~~Dv~~a~~~G~  186 (260)
                      +|+|++.-...-...|+
T Consensus       129 ivDd~~~~~~~~~~N~I  145 (181)
T d1ta0a_         129 ILDNSPASYVFHPDNAV  145 (181)
T ss_dssp             EECSCGGGGTTCGGGBC
T ss_pred             EEcCChhhhhcCccCee
Confidence            99999976544333444

>d1y8aa1 c.108.1.24 (A:1-308) Hypothetical protein AF1437 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: AF1437-like
domain: Hypothetical protein AF1437
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.35  E-value=0.013  Score=43.00  Aligned_cols=98  Identities=17%  Similarity=0.172  Sum_probs=67.2

Q ss_pred             cCCCCccHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEeccc-c-CCCCC-----------------
Q 024956           89 KVKALPGANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSDE-V-RTGKP-----------------  149 (260)
Q Consensus        89 ~~~~~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~~-~-~~~kp-----------------  149 (260)
                      .+.+.||+.++++.+.+. .+.+|+|.+...++++.. +..|+.  ++ +++.+. . ....|                 
T Consensus        79 ~~~lvpgA~~~lk~l~~~-m~~yIvSTSY~qyi~al~-~~~gfp--~e-~~~T~~~lD~~~~p~ee~e~ll~i~~~~~d~  153 (308)
T d1y8aa1          79 SAKFVPDAEKAMATLQER-WTPVVISTSYTQYLRRTA-SMIGVR--GE-LHGTEVDFDSIAVPEGLREELLSIIDVIASL  153 (308)
T ss_dssp             HCCBCTTHHHHHHHHHTT-CEEEEEEEEEHHHHHHHH-HHTTCC--SE-EEEEBCCGGGCCCCHHHHHHHHHHHHHHHHC
T ss_pred             ceeecCCHHHHHHHHHhh-CCcEEEeccHHHHHHHHH-hhcCCC--ce-eecccccccccCCChHHHHHHHHHhhhccCc
Confidence            478999999999999988 899999999999888777 777773  22 222110 0 00111                 


Q ss_pred             --------------------------------ChHHHHHHHHHcCCCCCcEEEEecCHhhHHHHHHc---CCeEEEEcC
Q 024956          150 --------------------------------SPDIFLEAAKRLNMEPSSSLVIEDSVIGVVAGKAA---GMEVVAVPS  193 (260)
Q Consensus       150 --------------------------------~~~~~~~~l~~l~~~~~~~~~vGD~~~Dv~~a~~~---G~~~i~~~~  193 (260)
                                                      +..+.+..++..++++  .++||||..|+++.+.+   |--.|.+|.
T Consensus       154 ~~eel~e~~d~~f~~~e~~~i~e~Vk~VGgg~k~~i~~~~~~~~~~~~--~~~VGDSITDve~Lr~~r~~gGlaIsFNG  230 (308)
T d1y8aa1         154 SGEELFRKLDELFSRSEVRKIVESVKAVGAGEKAKIMRGYCESKGIDF--PVVVGDSISDYKMFEAARGLGGVAIAFNG  230 (308)
T ss_dssp             CHHHHHHHHHHHHHSHHHHHHHHTCBCCCHHHHHHHHHHHHHHHTCSS--CEEEECSGGGHHHHHHHHHTTCEEEEESC
T ss_pred             cHHHHHHHHHHHhccchHhhHHhhhcccCCchhHHHHHhhcccccCCc--ceeccCccccHHHHHHHhcCCCeeEEecC
Confidence                                            1234455566677766  49999999999997664   444566665

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=91.62  E-value=1.7  Score=31.40  Aligned_cols=95  Identities=13%  Similarity=0.135  Sum_probs=69.7

Q ss_pred             CCCccHHHHHH---HHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceEEecc-ccCCCCCChHHHHHHHHHcCCCCC
Q 024956           91 KALPGANRLIK---HLSCHGVPMALASNSHRATIESKISYQHGWNESFSVIVGSD-EVRTGKPSPDIFLEAAKRLNMEPS  166 (260)
Q Consensus        91 ~~~~~~~~~l~---~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i~~~~-~~~~~kp~~~~~~~~l~~l~~~~~  166 (260)
                      .++|+..++++   .|-+.|+.+..+++.+....+ .| +..|.....-  .++. ..+.+..++..++.++++..++  
T Consensus       106 ~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D~v~ak-~L-e~~Gc~avMP--lgsPIGSg~Gl~n~~~l~~i~~~~~vP--  179 (251)
T d1xm3a_         106 SLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLAR-KL-EELGVHAIMP--GASPIGSGQGILNPLNLSFIIEQAKVP--  179 (251)
T ss_dssp             TCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHH-HH-HHHTCSCBEE--CSSSTTCCCCCSCHHHHHHHHHHCSSC--
T ss_pred             CcCCCHHHHHHHHHHHHhCCcEEEEecCCCHHHHH-HH-HHcCChhHHH--hhhhhhcCCCcCChHHHHHHHhcCCcc--
Confidence            35777777774   566799999999999988776 44 4456433211  1111 2356777889999999998775  


Q ss_pred             cEEEEecCH---hhHHHHHHcCCeEEEEcC
Q 024956          167 SSLVIEDSV---IGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       167 ~~~~vGD~~---~Dv~~a~~~G~~~i~~~~  193 (260)
                        +.|+-+.   +|...|-+.|+..|++|+
T Consensus       180 --vIvDAGIG~pSdAa~AMElG~daVLvNT  207 (251)
T d1xm3a_         180 --VIVDAGIGSPKDAAYAMELGADGVLLNT  207 (251)
T ss_dssp             --BEEESCCCSHHHHHHHHHTTCSEEEESH
T ss_pred             --EEEecCCCCHHHHHHHHHccCCEEEech
Confidence              6676654   799999999999999997

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.10  E-value=0.11  Score=41.08  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=18.2

Q ss_pred             ccEEEEecCCccccCHHHHHHH
Q 024956            9 MSCVILDLDGTLLNTDGMFSEV   30 (260)
Q Consensus         9 ~k~vifD~DGTL~d~~~~~~~~   30 (260)
                      +|.|+||+||||++....+..+
T Consensus         1 ~~~i~fd~dGVll~~~~~~D~s   22 (380)
T d1qyia_           1 MKKILFDVDGVFLSEERCFDVS   22 (380)
T ss_dssp             CCEEEECSBTTTBCSHHHHHHH
T ss_pred             CceEEEeCCcEEEcceeecchH
Confidence            4789999999999987776543

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.32  Score=35.66  Aligned_cols=48  Identities=23%  Similarity=0.392  Sum_probs=34.1

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCCh---HhHHHHHHhhcCCccccceEEe
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHR---ATIESKISYQHGWNESFSVIVG  140 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~---~~~~~~l~~~~gl~~~f~~i~~  140 (260)
                      ++|++.+++++|+++|++++++||+..   ..+.+.+ ..+|+.-..+.+++
T Consensus        20 ~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~~~~l-~~~G~~~~~~~i~~   70 (250)
T d2c4na1          20 AVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRF-ATAGVDVPDSVFYT   70 (250)
T ss_dssp             ECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHH-HHTTCCCCGGGEEE
T ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHH-hhccccccceeEec
Confidence            457888999999999999999998764   3344455 55676543344444

>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Chelatase-like
superfamily: PrpR receptor domain-like
family: PrpR receptor domain-like
domain: Propionate catabolism operon regulatory protein PrpR
species: Escherichia coli [TaxId: 562]

Probab=86.86  E-value=0.91  Score=31.65  Aligned_cols=86  Identities=10%  Similarity=0.045  Sum_probs=51.2

Q ss_pred             cHHHHHHHHHHCCCcEEEEeCCChHhHHHHHHhhcCCccccceE-EeccccCCCCCChHHHHHHHHHcCCCCCcEEEEec
Q 024956           95 GANRLIKHLSCHGVPMALASNSHRATIESKISYQHGWNESFSVI-VGSDEVRTGKPSPDIFLEAAKRLNMEPSSSLVIED  173 (260)
Q Consensus        95 ~~~~~l~~l~~~g~~i~i~s~~~~~~~~~~l~~~~gl~~~f~~i-~~~~~~~~~kp~~~~~~~~l~~l~~~~~~~~~vGD  173 (260)
                      ++.+.|..+++.+-++++++......--..+.+.+++.-  ... +.+.+      +....-.-+++.|++    ++|||
T Consensus        82 Dil~al~~a~~~~~kiavV~~~~~~~~~~~~~~ll~~~i--~~~~~~~~~------e~~~~v~~l~~~G~~----vVVG~  149 (186)
T d2pjua1          82 DVLQFLAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRL--DQRSYITEE------DARGQINELKANGTE----AVVGA  149 (186)
T ss_dssp             HHHHHHHHTTCTTSCEEEEEESSCCHHHHHHHHHHTCCE--EEEEESSHH------HHHHHHHHHHHTTCC----EEEES
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCccchHHHHHHHHhCCce--EEEEecCHH------HHHHHHHHHHHCCCC----EEECC
Confidence            455555555566789999986655443334436666642  222 21111      112223334455665    77999


Q ss_pred             CHhhHHHHHHcCCeEEEEcC
Q 024956          174 SVIGVVAGKAAGMEVVAVPS  193 (260)
Q Consensus       174 ~~~Dv~~a~~~G~~~i~~~~  193 (260)
                      +.. ...|+..|++.+++.+
T Consensus       150 ~~~-~~~A~~~Gl~~vli~S  168 (186)
T d2pjua1         150 GLI-TDLAEEAGMTGIFIYS  168 (186)
T ss_dssp             HHH-HHHHHHTTSEEEESSC
T ss_pred             hHH-HHHHHHcCCCEEEEeC
Confidence            975 4788999999999866

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=86.70  E-value=0.5  Score=34.67  Aligned_cols=49  Identities=18%  Similarity=0.238  Sum_probs=35.1

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChHh---HHHHHHhhcCCccccceEEec
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRAT---IESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~~---~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      +.|++.++|++|+++|++++++||+....   ....+ ...|+.-..+.++++
T Consensus        24 ~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~-~~~g~~~~~~~v~ts   75 (261)
T d1vjra_          24 LLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKL-RNMGVDVPDDAVVTS   75 (261)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHH-HHTTCCCCGGGEEEH
T ss_pred             cCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH-HhhccccccceeccH
Confidence            45789999999999999999999875433   33344 556765545556553

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.73  E-value=0.14  Score=36.32  Aligned_cols=17  Identities=41%  Similarity=0.550  Sum_probs=14.0

Q ss_pred             ccccEEEEecCCccccC
Q 024956            7 KLMSCVILDLDGTLLNT   23 (260)
Q Consensus         7 ~~~k~vifD~DGTL~d~   23 (260)
                      .+-|+++||.||||+..
T Consensus        19 ~~~Kia~fDrDGtLik~   35 (195)
T d1yj5a1          19 PQGKVAAFDLDGTLITT   35 (195)
T ss_dssp             CCSCEEEECSBTTTEEC
T ss_pred             CcCcEEEEECCCceEee
Confidence            35689999999999853

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=85.50  E-value=0.43  Score=34.93  Aligned_cols=50  Identities=14%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCChH---hHHHHHHhhcCCccccceEEec
Q 024956           92 ALPGANRLIKHLSCHGVPMALASNSHRA---TIESKISYQHGWNESFSVIVGS  141 (260)
Q Consensus        92 ~~~~~~~~l~~l~~~g~~i~i~s~~~~~---~~~~~l~~~~gl~~~f~~i~~~  141 (260)
                      +.|++.++++.|++.|++++++||+...   .+...+...+++....+.++++
T Consensus        19 ~i~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~~~~~~~~~~~~i~~~   71 (253)
T d1wvia_          19 RIPAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLATSFNIKTPLETIYTA   71 (253)
T ss_dssp             ECHHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHHHHSCCCCGGGEEEH
T ss_pred             cCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHhhcCccccccccccH
Confidence            4678889999999999999999986443   3444443445665444555543

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=82.02  E-value=0.97  Score=32.86  Aligned_cols=48  Identities=15%  Similarity=0.369  Sum_probs=32.1

Q ss_pred             CccHHHHHHHHHHCCCcEEEEeCCChHhHH---HHHHhhcCCccccceEEe
Q 024956           93 LPGANRLIKHLSCHGVPMALASNSHRATIE---SKISYQHGWNESFSVIVG  140 (260)
Q Consensus        93 ~~~~~~~l~~l~~~g~~i~i~s~~~~~~~~---~~l~~~~gl~~~f~~i~~  140 (260)
                      .|++.+++++|++.|++++++||+......   ..+...+++....+.+++
T Consensus        20 i~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L~~~~~~~~~~~~i~~   70 (253)
T d1yv9a1          20 IPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYT   70 (253)
T ss_dssp             CHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCGGGEEE
T ss_pred             CccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHHHhcCCccccccccC
Confidence            467889999999999999999986644333   334344455444444544

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=0.3  Score=34.06  Aligned_cols=16  Identities=44%  Similarity=0.775  Sum_probs=13.7

Q ss_pred             cccEEEEecCCccccC
Q 024956            8 LMSCVILDLDGTLLNT   23 (260)
Q Consensus         8 ~~k~vifD~DGTL~d~   23 (260)
                      +-.++++|+|+||+.+
T Consensus        14 ~k~~LVLDLDeTLihs   29 (181)
T d1ta0a_          14 DKICVVIDLDETLVHS   29 (181)
T ss_dssp             TSCEEEECCBTTTEEE
T ss_pred             CCeEEEEeCCCCEEcc
Confidence            3468999999999986