Citrus Sinensis ID: 024958

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccccccEEEEEcccccEEccccEEEccccHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHHHHHccccccccccccccccccccccHHHccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccccccccccEEEEEccHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEccccccHHcccEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEcccccccccHHHcccccccEEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEcccccHHHHHHHHcHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccc
Coil and Loop (DISEMBL)
mgsslllvsgstedpkclfppepehyggpklKVAIIGAGLAGMSTAVELLDqghevdiyesrsfiggkvgsfidkhgnhieMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFllrtpdagfscfadlaltspedyygegqgsllqcvltpgnpymplpndeIIRRVARQslyrggpgkvplrtdqktpvknlflagsytkqdyidsmegptlsdrQASAYICNAGEELVALRKQLAAFEsqeqmeaptttndelslv
Flexible Loop (DISEMBL)
mgsslllvsgstedpkclfppepehyggPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYrggpgkvplrtdqktpvkNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAfesqeqmeaptttndelslv
Low Complexity Region (SEG)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Disordered region (IsUnstruct)
*************************YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGG***********TPVKNLFLAGSYTKQDYID***********ASAYICNAGEELVALRKQL**********************
Disordered Region (DISOPRED)
*********************************AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICN***************************NDELSLV
Disordered Region (DISEMBL)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFES*****************
Disordered Region (DISPRO)
*******************PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAA*E******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q9FV46	587	Zeta-carotene desaturase,	N/A	no	0.573	0.253	0.664	4e-57
Q9SMJ3	588	Zeta-carotene desaturase,	N/A	no	0.588	0.260	0.648	6e-56
O49901	574	Zeta-carotene desaturase,	N/A	no	0.592	0.268	0.625	3e-55
Q9SE20	588	Zeta-carotene desaturase,	N/A	no	0.588	0.260	0.631	1e-54
Q38893	558	Zeta-carotene desaturase,	yes	no	0.576	0.268	0.584	1e-50
Q9ZTP4	570	Zeta-carotene desaturase,	N/A	no	0.507	0.231	0.624	4e-47
Q31N27	481	Probable zeta-carotene de	yes	no	0.461	0.249	0.517	8e-34
P74306	489	Zeta-carotene desaturase	N/A	no	0.507	0.269	0.506	7e-32
Q9R6X4	479	Zeta-carotene desaturase	yes	no	0.461	0.250	0.510	1e-31
P26294	474	15-cis-phytoene desaturas	no	no	0.196	0.107	0.462	4e-14

>sp|Q9FV46|ZDS_TARER Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1

 Score =  221 bits (563), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 119/179 (66%), Positives = 129/179 (72%), Gaps = 30/179 (16%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQA G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 414 RQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 473

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV++Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 474 IISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 533

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASA+IC+AGEEL ALRKQLAA +S + +       DE+SLV
Sbjct: 534 TKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGV-----DEMSLV 587

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
Tagetes erecta (taxid: 13708)
EC: 1EC: .EC: 3EC: .EC: 5EC: .EC: 6

>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1

 Score =  217 bits (553), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 131/179 (73%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQ ++A G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 411 RQSKRATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 470

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRV++Q                       SLYR GPGK P R DQKTPV+N FLAGSY
Sbjct: 471 IIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSY 530

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYIC+AGE+L+ALRK++AA E  E +    + +DELSLV
Sbjct: 531 TKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAELNE-ISKGVSLSDELSLV 588

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. No activity with all-trans-zeta-carotene. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Capsicum annuum (taxid: 4072)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|O49901|ZDS_NARPS Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1

 Score =  215 bits (547), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/179 (62%), Positives = 128/179 (71%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR A+G   LL TPDA FSCF+DLAL+SPEDYY EGQGSL+Q VLTPG+PYMPLPND 
Sbjct: 396 RQLRAAVGLDNLLYTPDADFSCFSDLALSSPEDYYIEGQGSLIQAVLTPGDPYMPLPNDA 455

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV +Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 456 IIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 515

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQA+AYIC+AGE+L ALRK++AA   ++ +   +  +DELSLV
Sbjct: 516 TKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRKKIAADHPEQLINKDSNVSDELSLV 574

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Narcissus pseudonarcissus (taxid: 39639)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9SE20|ZDS_SOLLC Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1

 Score =  213 bits (542), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/179 (63%), Positives = 128/179 (71%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL++A G   LL TPDA FSCFADLAL SP+DYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 411 RQLKRAAGLDNLLYTPDADFSCFADLALASPDDYYIEGQGSLLQCVLTPGDPYMPLSNDE 470

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II+RV +Q                       SLYR GPGK P R DQKTPV+N FLAGSY
Sbjct: 471 IIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSY 530

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICN GE+L+ALRK++ A E  + +    + +DELSLV
Sbjct: 531 TKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAELND-ISKGVSLSDELSLV 588

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q38893|ZDS_ARATH Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=1 SV=3

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 107/183 (58%), Positives = 125/183 (68%), Gaps = 33/183 (18%)

Query: 103 MDVYRQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPL 160
           +++ RQL++A+G   LL TPDA FSCFADLAL SP DYY EGQG+LLQCVLTPG+PYM +
Sbjct: 384 IELARQLKRAVGLDNLLYTPDADFSCFADLALASPADYYIEGQGTLLQCVLTPGDPYMRM 443

Query: 161 PNDEIIRRVA-----------------------RQSLYRGGPGKVPLRTDQKTPVKNLFL 197
           PND+II +VA                        QSLYR  PGK P R DQKTP+KN FL
Sbjct: 444 PNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFL 503

Query: 198 AGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDEL 257
           AGSYTKQDYIDSMEG TLS RQAS+YIC+AGEEL  L K+L++        + T   DEL
Sbjct: 504 AGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDEL 555

Query: 258 SLV 260
           SLV
Sbjct: 556 SLV 558

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'. Shows stereoselectivity toward trans C15-C15'zeta-carotene double bond. The zeta-carotene produced by the phytoene desaturase PDS has a C15-C15' double bond in the cis configuration and it requires isomerization before being recognized as substrate by ZDS. The main product is 7,9,7',9'-tetra-cis-lycopene (pro-lycopene).

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9ZTP4|ZDS_MAIZE Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/157 (62%), Positives = 112/157 (71%), Gaps = 25/157 (15%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL++A+G   LL T DA FSCF+DLAL+SP DYY EGQGSL+Q VLTPG+PYMPLPN+E
Sbjct: 396 RQLQRAVGLDNLLYTADADFSCFSDLALSSPADYYIEGQGSLIQAVLTPGDPYMPLPNEE 455

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II +V +Q                       SLYR  PG  P R DQKTPVKN FL+GSY
Sbjct: 456 IISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSY 515

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQL 238
           TKQDYIDSMEG TLS R+ SAYIC AGEEL+ALRK+L
Sbjct: 516 TKQDYIDSMEGATLSGRRTSAYICGAGEELLALRKKL 552

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q31N27|ZDS_SYNE7 Probable zeta-carotene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=zds PE=3 SV=1

 Score =  144 bits (362), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 92/145 (63%), Gaps = 25/145 (17%)

Query: 108 QLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEI 165
           QL  A G   LL T DA FSCF DLAL+SP+DYY +GQGSLLQCVLTPG+P++ + N++I
Sbjct: 332 QLDHATGLDNLLYTADADFSCFTDLALSSPKDYYRKGQGSLLQCVLTPGDPFIAMKNEDI 391

Query: 166 IRRVAR-----------------------QSLYRGGPGKVPLRTDQKTPVKNLFLAGSYT 202
            + V +                       QSLYR  PG  P R DQKTP+ N FLAGSYT
Sbjct: 392 AQHVLKQVHELFPSSRDLNMTWSNVVKLAQSLYREAPGMDPFRPDQKTPIANFFLAGSYT 451

Query: 203 KQDYIDSMEGPTLSDRQASAYICNA 227
           +QDYIDSMEG T+S R+A+  +  A
Sbjct: 452 QQDYIDSMEGATISGRRAAKAMLEA 476

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P74306|ZDS_SYNY3 Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=crtQ PE=3 SV=1

 Score =  137 bits (345), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 83/164 (50%), Positives = 93/164 (56%), Gaps = 32/164 (19%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL QA G   LL T DA FSCFADLALTSP DYY  G+GSLLQ VLTPG+P+M   N+ 
Sbjct: 332 KQLEQAFGLDNLLYTSDAEFSCFADLALTSPADYYRPGEGSLLQLVLTPGDPFMKESNEA 391

Query: 165 IIRRVAR-----------------------QSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           I  RV +                       QSLYR  PG    R  Q TP+ N FLAGSY
Sbjct: 392 IAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSY 451

Query: 202 TKQDYIDSMEGPTLSDRQAS-AYICNAGEELVALRKQLAAFESQ 244
           T+QDYIDSMEG TLS RQA+ A + N        R Q A   SQ
Sbjct: 452 TQQDYIDSMEGATLSGRQAAQAILANQA------RLQTAVLASQ 489

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|Q9R6X4|ZDS_NOSS1 Zeta-carotene desaturase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=crtQ PE=3 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 91/145 (62%), Gaps = 25/145 (17%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL++A G   LL T DA FSCFADLALTSP DYY +GQGSLLQ VLTPG+P++   N+ 
Sbjct: 331 KQLKEAAGLDNLLYTADADFSCFADLALTSPSDYYRQGQGSLLQLVLTPGDPFIKESNEA 390

Query: 165 IIRRVAR-----------------------QSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           I + V +                       QSLYR  PG    R +QKTP+ N FLAGSY
Sbjct: 391 IAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSY 450

Query: 202 TKQDYIDSMEGPTLSDRQASAYICN 226
           T+QDYIDSMEG T+S R+A+  I +
Sbjct: 451 TQQDYIDSMEGATVSGRRAAKVILD 475

Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 6

>sp|P26294|PDS_SYNE7 15-cis-phytoene desaturase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=1 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 52/80 (65%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++VAI GAGLAG+S A  L D GH   +YE R  +GGKV ++ D+ G+  E GLHIFFG 
Sbjct: 1   MRVAIAGAGLAGLSCAKYLADAGHTPIVYERRDVLGGKVAAWKDEDGDWYETGLHIFFGA 60

Query: 91  YNNLFRLMKKFFMDVYRQLR 110
           Y N+ +L K+  ++   Q +
Sbjct: 61  YPNMLQLFKELNIEDRLQWK 80

This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene. Also active with phytofluene and 1,2-epoxyphytoene as substrates.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

EC: 1

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
18073986	570	zeta-carotene desaturase [Citrus sinensi	0.592	0.270	0.782	1e-69
83637848	570	zeta-carotene desaturase [Citrus unshiu]	0.592	0.270	0.782	1e-69
15824043	570	zeta-carotene desaturase [Citrus unshiu]	0.592	0.270	0.782	1e-69
190576747	570	zeta carotene desaturase [Citrus maxima]	0.592	0.270	0.782	1e-69
13991921	570	zeta-carotene desaturase precursor [Citr	0.592	0.270	0.782	2e-69
197318637	299	zeta carotene desaturase [Citrus maxima]	0.592	0.515	0.765	8e-67
33313474	571	zeta-carotene desaturase ZDS2 [Malus x d	0.588	0.267	0.692	3e-57
33313470	568	zeta-carotene desaturase ZDS1 [Malus x d	0.588	0.269	0.692	3e-57
224130698	530	predicted protein [Populus trichocarpa]	0.588	0.288	0.687	9e-57
254935143	586	zeta carotene desaturase [Jatropha curca	0.588	0.261	0.675	1e-56

>gi|18073986|emb|CAC85667.1| zeta-carotene desaturase [Citrus sinensis]

 Score =  269 bits (687), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 143/179 (79%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|83637848|gb|ABC33728.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 143/179 (79%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15824043|dbj|BAB68552.1| zeta-carotene desaturase [Citrus unshiu]

 Score =  268 bits (686), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 143/179 (79%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|190576747|gb|ACE79169.1| zeta carotene desaturase [Citrus maxima]

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 143/179 (79%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLAVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13991921|gb|AAK51557.1|AF372617_1 zeta-carotene desaturase precursor [Citrus x paradisi]

 Score =  268 bits (685), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 140/179 (78%), Positives = 143/179 (79%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+ALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPNDE
Sbjct: 392 RQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDE 451

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 452 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 511

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV
Sbjct: 512 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 570

Source: Citrus x paradisi

Species: Citrus x paradisi

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197318637|gb|ACH67607.1| zeta carotene desaturase [Citrus maxima]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 137/179 (76%), Positives = 140/179 (78%), Gaps = 25/179 (13%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQ R+ALGF  LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 121 RQSRRALGFDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLQNDE 180

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           IIRRVA+Q                       SLYR  PGK P R DQKTPVKN FLAGSY
Sbjct: 181 IIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYRERPGKDPFRPDQKTPVKNFFLAGSY 240

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYICNAGEELVALRKQLAAFESQEQMEAPTTT DELSLV
Sbjct: 241 TKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTTDELSLV 299

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33313474|gb|AAQ04225.1| zeta-carotene desaturase ZDS2 [Malus x domestica]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/179 (69%), Positives = 132/179 (73%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL+QA G   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 394 RQLKQASGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 453

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV +Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 454 IIARVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 513

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYIC+AGEELV LRK+LAA +S E  +A  TT DELSLV
Sbjct: 514 TKQDYIDSMEGATLSGRQASAYICDAGEELVGLRKKLAAQDSGEYTKAVNTT-DELSLV 571

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33313470|gb|AAQ04224.1| zeta-carotene desaturase ZDS1 [Malus x domestica]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/179 (69%), Positives = 132/179 (73%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQL+QA G   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPLPN+E
Sbjct: 391 RQLKQASGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLPNEE 450

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV +Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 451 IIARVTKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 510

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYIC+AGEELV LRK+LAA +S E  +A  TT DELSLV
Sbjct: 511 TKQDYIDSMEGATLSGRQASAYICDAGEELVGLRKKLAAQDSGEYTKAVNTT-DELSLV 568

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130698|ref|XP_002328354.1| predicted protein [Populus trichocarpa] gi|222838069|gb|EEE76434.1| predicted protein [Populus trichocarpa]

 Score =  226 bits (575), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 123/179 (68%), Positives = 131/179 (73%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQA G   LL TPDA FSCFADLAL SPEDYY EGQGSLLQCVLTPG+PYM L ND+
Sbjct: 353 RQLRQAAGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMSLTNDK 412

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV++Q                       SLYR GPGK P R DQKTPVKN FLAGSY
Sbjct: 413 IIERVSKQVLALFPSSQGLEVIWSSVVKIAQSLYREGPGKDPFRPDQKTPVKNFFLAGSY 472

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYIC+AGEELVALRK+LAA ESQ+   + T T DELSLV
Sbjct: 473 TKQDYIDSMEGATLSGRQASAYICDAGEELVALRKKLAAVESQDCANSNTVT-DELSLV 530

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|254935143|gb|ACT87979.1| zeta carotene desaturase [Jatropha curcas]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 121/179 (67%), Positives = 132/179 (73%), Gaps = 26/179 (14%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLRQALG   LL TPDA FSCFADLALTSPEDYY EGQGSLLQCVLTPG+PYMPL NDE
Sbjct: 409 RQLRQALGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDE 468

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           II RV++Q                       S+YR GPG+ P R DQKTPVKN FL+GSY
Sbjct: 469 IINRVSKQVLALFPSSQGLEVIWSSVVKIGQSIYREGPGRDPFRPDQKTPVKNFFLSGSY 528

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 260
           TKQDYIDSMEG TLS RQASAYIC+AGE+LVALRK+LAA ES E +   +   DELSLV
Sbjct: 529 TKQDYIDSMEGATLSGRQASAYICDAGEDLVALRKKLAAIESPE-IGPSSPVTDELSLV 586

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
TAIR|locus:2114789	558	ZDS "zeta-carotene desaturase"	0.346	0.161	0.855	4.2e-91
TAIR|locus:2129515	566	PDS3 "phytoene desaturase 3" [	0.373	0.171	0.408	1.4e-19
UNIPROTKB|Q8EGM9	1041	SO_1571 "Bifunctional DNA-bind	0.338	0.084	0.410	2.5e-06
TIGR_CMR|SO_1571	1041	SO_1571 "hypothetical protein"	0.338	0.084	0.410	2.5e-06
WB|WBGene00016061	527	hpo-15 [Caenorhabditis elegans	0.269	0.132	0.361	0.00019
WB|WBGene00011615	737	lsd-1 [Caenorhabditis elegans	0.25	0.088	0.424	0.00024
UNIPROTKB|P21397	527	MAOA "Amine oxidase [flavin-co	0.330	0.163	0.267	0.00045
UNIPROTKB|P56560	520	MAOB "Amine oxidase [flavin-co	0.3	0.15	0.269	0.00052
RGD|3041	520	Maob "monoamine oxidase B" [Ra	0.3	0.15	0.282	0.00059
UNIPROTKB|P21398	527	MAOA "Amine oxidase [flavin-co	0.3	0.148	0.292	0.00065

TAIR|locus:2114789 ZDS "zeta-carotene desaturase" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 4.2e-91, Sum P(3) = 4.2e-91
 Identities = 77/90 (85%), Positives = 82/90 (91%)

Query:    11 STEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
             S   PK LFPPEP  Y GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY+SR+FIGGKVG
Sbjct:    37 SVNAPKGLFPPEPVPYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYDSRTFIGGKVG 96

Query:    71 SFIDKHGNHIEMGLHIFFGCYNNLFRLMKK 100
             SF+D+ GNHIEMGLH+FFGCYNNLFRLMKK
Sbjct:    97 SFVDRRGNHIEMGLHVFFGCYNNLFRLMKK 126

GO:0005739 "mitochondrion" evidence=ISM

GO:0016117 "carotenoid biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016719 "carotene 7,8-desaturase activity" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0016120 "carotene biosynthetic process" evidence=IDA

TAIR|locus:2129515 PDS3 "phytoene desaturase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 40/98 (40%), Positives = 60/98 (61%)

Query:    31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
             LKV I GAGLAG+STA  L D GH+  + E+R  +GGK+ ++ D+ G+  E GLHIFFG 
Sbjct:    93 LKVVIAGAGLAGLSTAKYLADAGHKPLLLEARDVLGGKIAAWKDEDGDWYETGLHIFFGA 152

Query:    91 YNNLFRLMKKFFMDVYRQLRQ-ALGFLLRTPDAGFSCF 127
             Y N+  L  +  ++   Q ++ ++ F + +    FS F
Sbjct:   153 YPNVQNLFGELGINDRLQWKEHSMIFAMPSKPGEFSRF 190

GO:0009507 "chloroplast" evidence=ISM;IDA;TAS

GO:0009536 "plastid" evidence=IEA

GO:0016117 "carotenoid biosynthetic process" evidence=IEA;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016705 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0016120 "carotene biosynthetic process" evidence=IDA

GO:0016166 "phytoene dehydrogenase activity" evidence=IDA

UNIPROTKB|Q8EGM9 SO_1571 "Bifunctional DNA-binding protein / oxidoreductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQ-G----HEVDIYESRSFIGGKVGSFIDKH-GNHIEM- 82
             K K+AI+G G+A M+ A  L D+ G    +E+DIY+    IGGK  S  +   G  IE  
Sbjct:   322 KQKIAILGGGVAAMTAACYLTDKPGWQNQYEIDIYQLGWRIGGKGASGRNAAMGQRIEEH 381

Query:    83 GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLL 117
             GLHI+FG Y N F LM+K + ++ R  +  L   L
Sbjct:   382 GLHIWFGFYQNAFALMRKAYEELDRPAQAPLATFL 416

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SO_1571 SO_1571 "hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 138 (53.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
 Identities = 39/95 (41%), Positives = 54/95 (56%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQ-G----HEVDIYESRSFIGGKVGSFIDKH-GNHIEM- 82
             K K+AI+G G+A M+ A  L D+ G    +E+DIY+    IGGK  S  +   G  IE  
Sbjct:   322 KQKIAILGGGVAAMTAACYLTDKPGWQNQYEIDIYQLGWRIGGKGASGRNAAMGQRIEEH 381

Query:    83 GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLL 117
             GLHI+FG Y N F LM+K + ++ R  +  L   L
Sbjct:   382 GLHIWFGFYQNAFALMRKAYEELDRPAQAPLATFL 416

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

WB|WBGene00016061 hpo-15 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 0.00019, P = 0.00019
 Identities = 26/72 (36%), Positives = 43/72 (59%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
             K  +AI+GAG++G+STA  L++ G  + DIYE    IGG++ +   K G  ++MG     
Sbjct:    31 KPSIAIVGAGISGLSTARRLIELGIDDFDIYEGLDRIGGRIHAIPYKDG-FLQMGAQFIN 89

Query:    89 GCYNNLFRLMKK 100
             G  N L+++  +
Sbjct:    90 GAQNPLYKIANR 101

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

WB|WBGene00011615 lsd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query:    19 FPPEPEHYGGPKLK-VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG 77
             F P+ E     + K V +IGAG AG++ A +LL  G +V + E+    GG+V S I KHG
Sbjct:   162 FFPKTELVNNMEKKFVVVIGAGAAGIAAATQLLTFGFDVAVVEASGLTGGRVRSLISKHG 221

Query:    78 NHIEMG 83
               IE G
Sbjct:   222 ELIETG 227

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034720 "histone H3-K4 demethylation" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IMP

UNIPROTKB|P21397 MAOA "Amine oxidase [flavin-containing] A" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
 Identities = 23/86 (26%), Positives = 45/86 (52%)

Query:    22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
             E     G    V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H ++++
Sbjct:     5 EKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVD 64

Query:    82 MGLHIFFGCYNNLFRLMKKFFMDVYR 107
             +G        N + RL K+  ++ Y+
Sbjct:    65 VGGAYVGPTQNRILRLSKELGIETYK 90

GO:0016021 "integral to membrane" evidence=IEA

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0042420 "dopamine catabolic process" evidence=IEA

GO:0007610 "behavior" evidence=TAS

GO:0006576 "cellular biogenic amine metabolic process" evidence=TAS

GO:0005741 "mitochondrial outer membrane" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0008131 "primary amine oxidase activity" evidence=TAS

GO:0042136 "neurotransmitter biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|P56560 MAOB "Amine oxidase [flavin-containing] B" [Bos taurus (taxid:9913)]

 Score = 104 (41.7 bits), Expect = 0.00052, Sum P(3) = 0.00052
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
             K  V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G      
Sbjct:     4 KCDVVVVGGGISGMAAAKLLHDSGLNVIVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP 63

Query:    90 CYNNLFRLMKKFFMDVYR 107
               N++ RL K+  ++ Y+
Sbjct:    64 TQNHILRLSKELGLETYK 81

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|3041 Maob "monoamine oxidase B" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00059, Sum P(2) = 0.00059
 Identities = 22/78 (28%), Positives = 43/78 (55%)

Query:    30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
             K  V ++G G++GM+ A  L D G  V + E+R  +GG+  +  +K+  ++++G      
Sbjct:     4 KCDVIVVGGGISGMAAAKLLHDCGLSVVVLEARDRVGGRTYTIRNKNVKYVDLGGSYVGP 63

Query:    90 CYNNLFRLMKKFFMDVYR 107
               N + RL K+  ++ Y+
Sbjct:    64 TQNRILRLAKELGLETYK 81

GO:0005739 "mitochondrion" evidence=ISO

GO:0005741 "mitochondrial outer membrane" evidence=IDA;TAS

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0008131 "primary amine oxidase activity" evidence=IDA;TAS

GO:0009636 "response to toxic substance" evidence=IEP

GO:0010044 "response to aluminum ion" evidence=IEP

GO:0010269 "response to selenium ion" evidence=IEP

GO:0014063 "negative regulation of serotonin secretion" evidence=IMP

GO:0016021 "integral to membrane" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0042135 "neurotransmitter catabolic process" evidence=IDA;TAS

GO:0042493 "response to drug" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045471 "response to ethanol" evidence=IEP

GO:0045964 "positive regulation of dopamine metabolic process" evidence=IMP

GO:0048545 "response to steroid hormone stimulus" evidence=IEP

GO:0050660 "flavin adenine dinucleotide binding" evidence=IDA

GO:0051412 "response to corticosterone stimulus" evidence=IEP

UNIPROTKB|P21398 MAOA "Amine oxidase [flavin-containing] A" [Bos taurus (taxid:9913)]

 Score = 103 (41.3 bits), Expect = 0.00065, Sum P(2) = 0.00065
 Identities = 24/82 (29%), Positives = 48/82 (58%)

Query:    28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIY--ESRSFIGGKVGSFIDKHGNHIEMGLH 85
             G    V +IG G++G+S A +LL + HEV++   E+R  +GG+  +  ++H +++++G  
Sbjct:    11 GQMFDVVVIGGGISGLSAA-KLLAE-HEVNVLVLEARERVGGRTYTVRNEHVDYVDVGGA 68

Query:    86 IFFGCYNNLFRLMKKFFMDVYR 107
                   N + RL K+  ++ Y+
Sbjct:    69 YVGPTQNRILRLSKQLGLETYK 90

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0042420 "dopamine catabolic process" evidence=IEA

GO:0042135 "neurotransmitter catabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.99	0.766
3rd Layer	1.14.99.30	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	260
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	5e-71
PLN02487	569	PLN02487, PLN02487, zeta-carotene desaturase	9e-60
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	1e-58
TIGR02732	474	TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carot	5e-42
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	2e-29
COG3349	485	COG3349, COG3349, Uncharacterized conserved protei	5e-21
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	9e-17
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	2e-16
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	3e-16
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	3e-16
TIGR02731	453	TIGR02731, phytoene_desat, phytoene desaturase	6e-15
PLN02612	567	PLN02612, PLN02612, phytoene desaturase	5e-12
PRK07233	434	PRK07233, PRK07233, hypothetical protein; Provisio	3e-10
COG1233	487	COG1233, COG1233, Phytoene dehydrogenase and relat	7e-09
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	2e-08
PRK07208	479	PRK07208, PRK07208, hypothetical protein; Provisio	4e-08
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	6e-08
COG2907	447	COG2907, COG2907, Predicted NAD/FAD-binding protei	1e-07
COG1231	450	COG1231, COG1231, Monoamine oxidase [Amino acid tr	8e-07
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	9e-07
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	1e-06
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	2e-06
COG0654	387	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydrox	6e-06
PRK06753	373	PRK06753, PRK06753, hypothetical protein; Provisio	6e-06
pfam01266	234	pfam01266, DAO, FAD dependent oxidoreductase	8e-06
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	8e-06
PRK13984	604	PRK13984, PRK13984, putative oxidoreductase; Provi	1e-05
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-05
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	2e-05
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	2e-05
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	2e-05
PRK07236	386	PRK07236, PRK07236, hypothetical protein; Provisio	2e-05
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	3e-05
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	3e-05
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	5e-05
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	6e-05
COG1148	622	COG1148, HdrA, Heterodisulfide reductase, subunit	7e-05
PLN02976	1713	PLN02976, PLN02976, amine oxidase	9e-05
TIGR03467	411	TIGR03467, HpnE, squalene-associated FAD-dependent	1e-04
TIGR02734	502	TIGR02734, crtI_fam, phytoene desaturase	1e-04
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	1e-04
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	2e-04
PLN02172	461	PLN02172, PLN02172, flavin-containing monooxygenas	2e-04
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	4e-04
COG3380	331	COG3380, COG3380, Predicted NAD/FAD-dependent oxid	4e-04
PRK01747	662	PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-	5e-04
PLN02529	738	PLN02529, PLN02529, lysine-specific histone demeth	6e-04
PRK06847	375	PRK06847, PRK06847, hypothetical protein; Provisio	6e-04
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	7e-04
COG0562	374	COG0562, Glf, UDP-galactopyranose mutase [Cell env	7e-04
PRK07538	413	PRK07538, PRK07538, hypothetical protein; Provisio	0.001
PRK04176	257	PRK04176, PRK04176, ribulose-1,5-biphosphate synth	0.001
COG1635	262	COG1635, THI4, Ribulose 1,5-bisphosphate synthetas	0.001
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	0.001
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	0.002
PLN02268	435	PLN02268, PLN02268, probable polyamine oxidase	0.002
PLN03000	881	PLN03000, PLN03000, amine oxidase	0.002
PRK12409	410	PRK12409, PRK12409, D-amino acid dehydrogenase sma	0.002
TIGR02733	492	TIGR02733, desat_CrtD, C-3',4' desaturase CrtD	0.002
PRK12834	549	PRK12834, PRK12834, putative FAD-binding dehydroge	0.003
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	0.003
TIGR02032	295	TIGR02032, GG-red-SF, geranylgeranyl reductase fam	0.003
pfam00890	401	pfam00890, FAD_binding_2, FAD binding domain	0.003
TIGR01317	485	TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH	0.004
pfam06100	500	pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa m	0.004
pfam03486	405	pfam03486, HI0933_like, HI0933-like protein	0.004
PRK05329	422	PRK05329, PRK05329, anaerobic glycerol-3-phosphate	0.004

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  227 bits (580), Expect = 5e-71
 Identities = 101/162 (62%), Positives = 113/162 (69%), Gaps = 25/162 (15%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           RQLR+A G   LL + DA FSCFADLALTSPEDYY EG+GSL+Q VLTPG+PYMPL ND+
Sbjct: 407 RQLRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDK 466

Query: 165 IIRRVARQ-----------------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           I+ +V +Q                       SLYR  PG  P R DQKTP+ N FLAGSY
Sbjct: 467 IVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTPISNFFLAGSY 526

Query: 202 TKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAAFES 243
           TKQDYIDSMEG TLS RQA+AYIC AGEEL  LRK+LAA ES
Sbjct: 527 TKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAAEES 568

Length = 569

>gnl|CDD|215268 PLN02487, PLN02487, zeta-carotene desaturase

 Score =  198 bits (504), Expect = 9e-60
 Identities = 79/86 (91%), Positives = 82/86 (95%)

Query: 15  PKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID 74
           PK LFPPEPE Y GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR FIGGKVGSF+D
Sbjct: 60  PKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVD 119

Query: 75  KHGNHIEMGLHIFFGCYNNLFRLMKK 100
           K+GNHIEMGLH+FFGCYNNLFRLMKK
Sbjct: 120 KNGNHIEMGLHVFFGCYNNLFRLMKK 145

Length = 569

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score =  192 bits (490), Expect = 1e-58
 Identities = 85/144 (59%), Positives = 97/144 (67%), Gaps = 25/144 (17%)

Query: 107 RQLRQALGF--LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDE 164
           +QL++A G   LL T DA FSCFADLALTSP+DYY EGQGSLLQCVLTPG+P+MP  N+E
Sbjct: 331 KQLKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEE 390

Query: 165 IIRRVAR-----------------------QSLYRGGPGKVPLRTDQKTPVKNLFLAGSY 201
           I +RV +                       QSLYR  PG  P R DQKTP+ N FLAGSY
Sbjct: 391 IAKRVDKQVRALFPSSKNLKLTWSSVVKLAQSLYREAPGMDPFRPDQKTPISNFFLAGSY 450

Query: 202 TKQDYIDSMEGPTLSDRQASAYIC 225
           T+QDYIDSMEG TLS RQA+A I 
Sbjct: 451 TQQDYIDSMEGATLSGRQAAAAIL 474

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|131779 TIGR02732, zeta_caro_desat, 9,9'-di-cis-zeta-carotene desaturase

 Score =  149 bits (377), Expect = 5e-42
 Identities = 59/69 (85%), Positives = 65/69 (94%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           KVAI+GAGLAG+STAVEL+D GHEVDIYESRSFIGGKVGS++D  GNHIEMGLH+FFGCY
Sbjct: 1   KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCY 60

Query: 92  NNLFRLMKK 100
            NLFRLMKK
Sbjct: 61  ANLFRLMKK 69

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. Length = 474

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score =  114 bits (288), Expect = 2e-29
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VAI GAGLAG++ A EL D G++V +YE+R  +GGKV S+ D  GNH+E GLH+FFGCY
Sbjct: 2   RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCY 61

Query: 92  NNLFRLMKKFFMDVYRQLRQALGFLLRTPDAG 123
            NL  L+K+  ++   QLR+     + +    
Sbjct: 62  YNLLTLLKELPIEDRLQLREHTKTFVGSGTRP 93

Length = 485

>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function unknown]

 Score = 91.3 bits (227), Expect = 5e-21
 Identities = 52/134 (38%), Positives = 65/134 (48%), Gaps = 23/134 (17%)

Query: 116 LLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR---- 171
           LL + D      ADLALTSP DY   G G  L+ VL PG P++   ++ I+    +    
Sbjct: 330 LLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYE 388

Query: 172 ------------------QSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGP 213
                             QSLY   PG    R +QKTP+ NL LAG YTKQ Y+ SMEG 
Sbjct: 389 LVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPNLLLAGDYTKQPYLGSMEGA 448

Query: 214 TLSDRQASAYICNA 227
           TLS   A+  I + 
Sbjct: 449 TLSGLLAANAILDN 462

Length = 485

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 72.1 bits (178), Expect = 9e-17
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)

Query: 35  IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL 94
           I+GAGL+G+  A  L  +G +V + E R  IGG   S  D  G   + G HIF   Y N+
Sbjct: 1   IVGAGLSGLVAAYLLAKRGKDVLVLEKRDRIGGNAYSERD-PGYRHDYGAHIFHTSYPNV 59

Query: 95  FRLMKKF 101
             L+ + 
Sbjct: 60  RELLDEL 66

Length = 66

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 40  LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMK 99
           LAG++ A ELL  G +V + E+R  +GG++ +     G  IE+G   F G Y NL  L+ 
Sbjct: 1   LAGLAAARELLRAGFDVTVLEARDRVGGRIRTVRFD-GFLIELGAQWFHGAYPNLLNLLL 59

Query: 100 KFFMDVYRQL 109
           +  +++   L
Sbjct: 60  ELGLELGLLL 69

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 77.6 bits (191), Expect = 3e-16
 Identities = 36/70 (51%), Positives = 47/70 (67%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           LKV I GAGLAG+STA  L D GH+  + E+R  +GGKV ++ D+ G+  E GLHIFFG 
Sbjct: 94  LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGA 153

Query: 91  YNNLFRLMKK 100
           Y N+  L  +
Sbjct: 154 YPNVQNLFGE 163

Length = 567

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VAI GAGLAG+S A  L D GH   + E+R  +GGKV ++ D+ G+  E GLHIFFG Y
Sbjct: 1   RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAY 60

Query: 92  NNLFRLMKK 100
            N+ +L+K+
Sbjct: 61  PNMLQLLKE 69

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase

 Score = 73.3 bits (180), Expect = 6e-15
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 29/128 (22%)

Query: 125 SCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQ------------ 172
           S +AD++ T  E  Y +   S+L+ V  P   ++   ++EII     +            
Sbjct: 328 SVYADMSETCKE--YADPDKSMLELVFAPAADWIGRSDEEIIDATMAELAKLFPNHIKAD 385

Query: 173 ---------------SLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSD 217
                          S+Y+  PG+   R  QKTP+ N FLAG YTKQ Y+ SMEG  LS 
Sbjct: 386 SPAKILKYKVVKTPRSVYKTTPGRQQYRPHQKTPIPNFFLAGDYTKQKYLASMEGAVLSG 445

Query: 218 RQASAYIC 225
           +  +  I 
Sbjct: 446 KLCAQAIV 453

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 453

>gnl|CDD|215330 PLN02612, PLN02612, phytoene desaturase

 Score = 64.9 bits (158), Expect = 5e-12
 Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 30/156 (19%)

Query: 107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEII 166
           R+L+     LL +     S +AD++ T  E YY   + S+L+ V  P   ++   +++II
Sbjct: 401 RKLKNTYDHLLFSRSPLLSVYADMSTTCKE-YYDPNK-SMLELVFAPAEEWISRSDEDII 458

Query: 167 ----RRVAR------------------------QSLYRGGPGKVPLRTDQKTPVKNLFLA 198
               + +A+                        +S+Y+  P   P R  Q++P++  +LA
Sbjct: 459 DATMKELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLA 518

Query: 199 GSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL 234
           G YTKQ Y+ SMEG  LS +  +  I    E L A 
Sbjct: 519 GDYTKQKYLASMEGAVLSGKLCAQSIVQDYELLAAR 554

Length = 567

>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 6/55 (10%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF------IDKHGNHI 80
          K+AI+G G+AG++ A  L  +GHEV ++E+   +GG   SF      I++  +HI
Sbjct: 1  KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGGLPIERFYHHI 55

Length = 434

>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 55.5 bits (134), Expect = 7e-09
 Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 11/100 (11%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           P   V +IGAGL G++ A  L   G +V + E    +GG+  +F +  G   + G   + 
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTF-ELDGFRFDTGPSWYL 60

Query: 89  GC-YNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCF 127
                 LFR +             A G  L  PD  +  F
Sbjct: 61  MPDPGPLFRELGNL---------DADGLDLLPPDPAYRVF 91

Length = 487

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 54.0 bits (131), Expect = 2e-08
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           E    LF   P+       KVA+IGAG AG++ A  L  +G++V I+E+R   GG
Sbjct: 127 ETGWVLFKRAPK----TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGG 177

Length = 457

>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K  V IIGAG AG++ A ELL +G+ V + E+   +GG +   +   GN  ++G H FF
Sbjct: 3  NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG-ISRTVTYKGNRFDIGGHRFF 61

Length = 479

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 23/106 (21%)

Query: 142 GQGSLLQCVLTPGNPYMPLPNDEIIRRVARQ---SLYRGGPGKVP--------------- 183
           G+   L  V++     + LP +E+  R+  +   +  R    K                 
Sbjct: 304 GEPGYLAVVISAARDLVDLPREELADRIVAELRRAFPRVAGAKPLWARVIKEKRATFAAT 363

Query: 184 -----LRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI 224
                LR   +TP  NLFLAG +T   +  +MEG   S  QA+  +
Sbjct: 364 PGLNRLRPGARTPWPNLFLAGDWTATGWPATMEGAVRSGVQAAEAV 409

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|225459 COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only]

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 5/75 (6%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK---VGSFIDKHGNHIEMGLH 85
          P+ K+A+IG+G++G+S A  LL + H+V ++E+   +GG    V    D  G  ++ G  
Sbjct: 7  PRRKIAVIGSGISGLSAAW-LLSRRHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFI 65

Query: 86 IFFG-CYNNLFRLMK 99
          ++    Y NL RL K
Sbjct: 66 VYNERTYPNLTRLFK 80

Length = 447

>gnl|CDD|224152 COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism]

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)

Query: 27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV------GSFIDKHGNHI 80
                V I+GAGLAG+S A EL   G++V I E+R  +GG+       G + D  G +I
Sbjct: 4  PPKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARAGGEYTDLGGQYI 63

Length = 450

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
          K+AIIG G+AG+S A  L       EV ++E+   +GG + +     G   E G H F  
Sbjct: 2  KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV-KIDGFLFERGPHHFLA 60

Length = 444

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           +VA+IG G AG+S A  L   GH V I+E+   +GG
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGG 174

Length = 564

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           P E       K KVA+IGAG AG++ A +L   GH+V ++E  +  GG
Sbjct: 114 PGELPGSRTGK-KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGG 160

Length = 457

>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
            L VAI+GAG AG++ A+ L   G +V + E   
Sbjct: 1  KMLDVAIVGAGPAGLALALALARAGLDVTLLERAP 35

Length = 387

>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional

 Score = 46.2 bits (110), Expect = 6e-06
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 12/58 (20%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS---------FIGGKVGSFIDKHGNH 79
          +K+AIIGAG+ G++ A  L +QGHEV ++E             IG  V   I K GNH
Sbjct: 1  MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNV---IKKLGNH 55

Length = 373

>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase

 Score = 45.4 bits (108), Expect = 8e-06
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V +IG G+ G+STA EL  +G  V + E      G
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG 36

This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1. Length = 234

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 46.3 bits (111), Expect = 8e-06
 Identities = 16/36 (44%), Positives = 25/36 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVA++G+G AG++ A +L   GH+V ++E    IGG
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGG 180

Length = 471

>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 20/36 (55%), Positives = 25/36 (69%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVAI+G+G AG+S A  L   G+EV +YES S  GG
Sbjct: 285 KVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGG 320

Length = 604

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 19  FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           + PE     G K  VAIIGAG AG++ A  LL +GH+V I+++    GG
Sbjct: 184 YIPERAPKSGKK--VAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGG 230

Length = 652

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 37/143 (25%)

Query: 114 GFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQS 173
           G L+       S    +  TSP    G G+G LL  VL      +   +DE +     + 
Sbjct: 306 GLLVTDGL---SRGGYVLDTSPSS--GSGRGVLLSYVLGDAARELEDLSDEELLEAVLRD 360

Query: 174 L-------------------------YRGGPGKVP------LRTDQKTPV-KNLFLAGSY 201
           L                          RG     P       R   +TPV   LF AG +
Sbjct: 361 LRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRYRPALRTPVGPGLFFAGEH 420

Query: 202 TKQDYIDSMEGPTLSDRQASAYI 224
           T   Y  ++EG   S  +A+  +
Sbjct: 421 TSGGYPGTVEGAVESGLRAARRV 443

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 22/48 (45%), Positives = 28/48 (58%)

Query: 22  EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           EPE       KVA+IGAG AG++ A EL   GH V ++E+    GG V
Sbjct: 125 EPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/46 (43%), Positives = 27/46 (58%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
           G + KVA+IGAG AG++ A  L   GH V ++E     GG V + I
Sbjct: 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNII 582

Length = 1019

>gnl|CDD|235980 PRK07236, PRK07236, hypothetical protein; Provisional

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
             +  +IG  L G+  A+ L   G +VD++E RS
Sbjct: 5  SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFE-RS 38

Length = 386

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
          KVAIIG G+ G+S A  L  +G   ++ + E+   +GGK+ + + K G  IE+G
Sbjct: 2  KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQT-VRKDGFPIELG 54

Length = 451

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 14/36 (38%), Positives = 21/36 (58%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V IIG G+ G+S A  L ++G +V + E+    GG
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGG 41

Length = 387

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
           V IIG G AG++ A+ L   G +V + E         G
Sbjct: 1  DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRG 39

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           KVAIIGAG AG++ A  L   G+EV +Y+
Sbjct: 19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYD 48

Length = 352

>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
            V +IG G+AG++ A+EL D G +V + E    IGG++   
Sbjct: 126 SVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKL 166

Length = 622

>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 18/38 (47%), Positives = 26/38 (68%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           K+ ++GAG AG++ A  L  QG  V + E+RS IGG+V
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRV 732

Length = 1713

>gnl|CDD|234221 TIGR03467, HpnE, squalene-associated FAD-dependent desaturase

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 52  QGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLR 110
            G  V ++E+R  +GG+  SF D   G  I+ G H+  G Y NL  L+++   +   Q  
Sbjct: 1   AGARVTLFEARPRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRIGAEPRLQGP 60

Query: 111 QALGFLLRTPDAGFSCFADLALTSP 135
           + L      P    S      L +P
Sbjct: 61  R-LPLPFYDPGGRLSRLRLSRLPAP 84

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time. Length = 411

>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF--GC 90
             +IGAG  G++ A+ L   G  V + E R   GG+ G  ++  G   + G  +      
Sbjct: 1   AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGV-LEDDGFRFDTGPTVITMPEA 59

Query: 91  YNNLFRLMKKFFMDVYRQLRQALGFLLRTPD 121
              LF L  +   D    +     + L   D
Sbjct: 60  LEELFALAGRDLADYVELVPLDPFYRLCWED 90

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 502

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
          V I+GAG AG S A  L   G +V + E  S  G K   
Sbjct: 6  VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44

Length = 396

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 27  GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
                KVA+IG+G AG++ A +L   G++V I+E+    GG
Sbjct: 137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGG 177

Length = 464

>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          VA+IGAG AG+  A EL  +GH V ++E    +GG
Sbjct: 13 VAVIGAGAAGLVAARELRREGHTVVVFEREKQVGG 47

Length = 461

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 17/38 (44%), Positives = 27/38 (71%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
             KVA+IG+G AG+S A +L  +G++V ++E+   IGG
Sbjct: 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGG 468

Length = 752

>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 16/45 (35%), Positives = 28/45 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHG 77
          +AI+GAG+AG++ A  L + G EV ++E    +GG++ +     G
Sbjct: 4  IAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGG 48

Length = 331

>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
             AIIG G+AG + A+ L  +G +V +YE
Sbjct: 262 DAAIIGGGIAGAALALALARRGWQVTLYE 290

Length = 662

>gnl|CDD|178144 PLN02529, PLN02529, lysine-specific histone demethylase 1

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
            P PE   G +  V I+GAGLAG++ A +LL  G +V + E R+  GG+V
Sbjct: 152 SPIPEE--GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRV 199

Length = 738

>gnl|CDD|235874 PRK06847, PRK06847, hypothetical protein; Provisional

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
          KV I+G G+ G+S A+ L   G  VD+ E
Sbjct: 6  KVLIVGGGIGGLSAAIALRRAGIAVDLVE 34

Length = 375

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 27  GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
               L VA+IG+G A M+ A++ ++QG  V + E R  IGG
Sbjct: 95  NERPLHVAVIGSGGAAMAAALKAVEQGARVTLIE-RGTIGG 134

Length = 561

>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 8/54 (14%)

Query: 35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG--------KVGSFIDKHGNHI 80
          I+GAGL+G   A      G  V I E R+ IGG        + G  + K+G HI
Sbjct: 6  IVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHI 59

Length = 374

>gnl|CDD|236046 PRK07538, PRK07538, hypothetical protein; Provisional

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61
          +KV I G G+ G++ A+ L  +G EV ++E+
Sbjct: 1  MKVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31

Length = 413

>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase; Provisional

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          VAI+GAG +G++ A  L   G +V ++E +   GG
Sbjct: 28 VAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGG 62

Length = 257

>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V I+GAG +G++ A  L   G +V I+E +   GG
Sbjct: 33 VIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGG 67

Length = 262

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
            V ++GAG  G+  A     +G +V + E+   +GG++
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL 175

Length = 415

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGG 67
              VAIIGAG +G++ A  L   G  +  I+E R  +GG
Sbjct: 7  THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGG 46

Length = 443

>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
          V +IG G+AG++ A  L D   +V + ESR  IGG+V
Sbjct: 3  VIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRV 39

Length = 435

>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 19  FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           FP +       K  V I+GAGL+G++ A +L+  G +V + E R   GG+V
Sbjct: 178 FPAQSS-----KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRV 223

Length = 881

>gnl|CDD|237093 PRK12409, PRK12409, D-amino acid dehydrogenase small subunit; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 11/29 (37%), Positives = 22/29 (75%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           +A+IGAG+ G++TA  L  +G++V +++
Sbjct: 3  HIAVIGAGITGVTTAYALAQRGYQVTVFD 31

Length = 410

>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
          V +IGAG+AG++ A  L  +G+ V + E  +  GG  G+F
Sbjct: 4  VVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTF 43

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 492

>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 2/37 (5%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIY--ESRSFIGG 67
          V ++GAGLAG+  A EL D G  V +   E+ + +GG
Sbjct: 7  VIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGG 43

Length = 549

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 20  PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
            P+ +       KVA+IGAG AG+S    L   GH V ++E +   GG V + I
Sbjct: 530 KPQGK---SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNII 580

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 16/36 (44%), Positives = 21/36 (58%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
          V ++GAG AG S A  L D+G  V + E +SF   K
Sbjct: 3  VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK 38

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 295

>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEV 56
          V +IG+GLAG++ A+E  + G +V
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKV 25

This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. Length = 401

>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 15/36 (41%), Positives = 23/36 (63%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           KVA++G+G AG++ A +L   GH V ++E     GG
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGG 180

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485

>gnl|CDD|218897 pfam06100, Strep_67kDa_ant, Streptococcal 67 kDa myosin-cross-reactive antigen like family

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 35 IIGAGLAGMSTAVELLDQGH----EVDIYESRSFIGGKV-GSFIDKHGNHI----EMGLH 85
          IIG+GLA ++ AV L+  G      + I E     GG + G      G  +    EM  H
Sbjct: 7  IIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGSLDGIGSPHLGYVVRGGREMENH 66

Query: 86 IFFGCYNNLFR 96
            F C  +LFR
Sbjct: 67 --FECLWDLFR 75

Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis. Length = 500

>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
           V +IG G AG+  A+    +G  V + +     G K+G 
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLIDK----GKKLGR 37

Length = 405

>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEV 56
          K  V +IG GLAG++ A+   + G  V
Sbjct: 2  KFDVLVIGGGLAGLTAALAAAEAGKRV 28

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.89
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.89
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.88
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.81
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.58
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.56
COG3349	485	Uncharacterized conserved protein [Function unknow	99.49
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.43
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.37
PLN02487	569	zeta-carotene desaturase	99.36
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.36
PRK07208	479	hypothetical protein; Provisional	99.35
PLN02268	435	probable polyamine oxidase	99.32
PRK07233	434	hypothetical protein; Provisional	99.3
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.29
PLN02576	496	protoporphyrinogen oxidase	99.29
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.29
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.28
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.27
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.26
PLN02612	567	phytoene desaturase	99.22
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.21
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.18
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.16
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.13
PLN02568	539	polyamine oxidase	99.12
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.09
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	99.09
PRK12779	944	putative bifunctional glutamate synthase subunit b	99.07
PRK10262	321	thioredoxin reductase; Provisional	99.06
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.05
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.03
PLN02676	487	polyamine oxidase	99.03
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.0
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.98
PLN02529	738	lysine-specific histone demethylase 1	98.98
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.97
PRK12831	464	putative oxidoreductase; Provisional	98.97
PLN02852	491	ferredoxin-NADP+ reductase	98.97
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.94
PRK14694	468	putative mercuric reductase; Provisional	98.92
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.92
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.92
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.91
PLN02328	808	lysine-specific histone demethylase 1 homolog	98.88
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.85
PLN03000	881	amine oxidase	98.85
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.84
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.84
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	98.83
PRK14727	479	putative mercuric reductase; Provisional	98.83
PRK06567	1028	putative bifunctional glutamate synthase subunit b	98.82
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.82
PRK06370	463	mercuric reductase; Validated	98.82
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.81
TIGR02053	463	MerA mercuric reductase. This model represents the	98.8
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.79
PRK13748	561	putative mercuric reductase; Provisional	98.77
PTZ00058	561	glutathione reductase; Provisional	98.76
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	98.76
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.73
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.7
PLN02976	1713	amine oxidase	98.67
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.66
PLN02507	499	glutathione reductase	98.65
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.55
PLN02546	558	glutathione reductase	98.52
PTZ00188	506	adrenodoxin reductase; Provisional	98.52
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.47
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.47
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.46
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.44
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.4
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.39
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.36
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.36
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.36
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.35
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.34
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	98.33
PLN02463	447	lycopene beta cyclase	98.32
PRK10157	428	putative oxidoreductase FixC; Provisional	98.32
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	98.32
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.32
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.31
PRK07236	386	hypothetical protein; Provisional	98.31
PRK08163	396	salicylate hydroxylase; Provisional	98.29
PRK10015	429	oxidoreductase; Provisional	98.29
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.29
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	98.29
PRK06753	373	hypothetical protein; Provisional	98.28
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.28
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.28
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.28
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.28
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.27
PRK07121	492	hypothetical protein; Validated	98.26
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.26
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	98.25
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.25
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.24
PRK07045	388	putative monooxygenase; Reviewed	98.24
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.24
PRK09126	392	hypothetical protein; Provisional	98.24
PRK06116	450	glutathione reductase; Validated	98.23
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.23
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.22
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.22
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.21
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.21
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.2
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.2
PRK08013	400	oxidoreductase; Provisional	98.2
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.19
PRK07538	413	hypothetical protein; Provisional	98.19
PRK06847	375	hypothetical protein; Provisional	98.18
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.18
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.17
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.17
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.17
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.17
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.16
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.16
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.16
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	98.15
PRK06184	502	hypothetical protein; Provisional	98.15
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.15
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.15
PRK07588	391	hypothetical protein; Provisional	98.15
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	98.15
COG2081	408	Predicted flavoproteins [General function predicti	98.14
PRK06475	400	salicylate hydroxylase; Provisional	98.14
PLN02697	529	lycopene epsilon cyclase	98.14
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.14
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.13
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.13
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.13
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.13
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.13
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.12
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.12
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.12
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	98.11
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.1
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.1
PRK05868	372	hypothetical protein; Validated	98.09
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.09
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.08
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.08
PLN02661	357	Putative thiazole synthesis	98.08
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.08
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	98.06
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.05
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.05
PRK08244	493	hypothetical protein; Provisional	98.05
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.04
PRK06185	407	hypothetical protein; Provisional	98.04
PRK08274	466	tricarballylate dehydrogenase; Validated	98.04
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.03
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.03
PRK06126	545	hypothetical protein; Provisional	98.03
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.03
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.02
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.02
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.01
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	98.01
PRK06834	488	hypothetical protein; Provisional	98.01
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.01
PLN02487	569	zeta-carotene desaturase	98.0
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.0
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.0
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.99
PLN02985	514	squalene monooxygenase	97.98
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.98
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.97
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.97
PRK07190	487	hypothetical protein; Provisional	97.97
PTZ00052	499	thioredoxin reductase; Provisional	97.97
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.97
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.93
PRK13984	604	putative oxidoreductase; Provisional	97.92
TIGR00275	400	flavoprotein, HI0933 family. The model when search	97.92
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.92
PRK11445	351	putative oxidoreductase; Provisional	97.92
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.91
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.91
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.89
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.89
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.89
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	97.89
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.89
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	97.88
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.88
PTZ00367	567	squalene epoxidase; Provisional	97.88
PRK12839	572	hypothetical protein; Provisional	97.88
PTZ00153	659	lipoamide dehydrogenase; Provisional	97.87
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	97.87
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.87
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.86
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	97.85
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	97.84
PRK07804	541	L-aspartate oxidase; Provisional	97.84
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.83
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	97.82
PRK08294	634	phenol 2-monooxygenase; Provisional	97.82
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.82
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	97.82
PRK05257	494	malate:quinone oxidoreductase; Validated	97.81
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.81
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.8
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.8
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	97.8
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.8
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.78
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.77
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.77
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.76
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.75
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.74
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.73
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.73
PRK08401	466	L-aspartate oxidase; Provisional	97.73
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	97.73
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	97.72
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.7
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.68
COG0579	429	Predicted dehydrogenase [General function predicti	97.68
PRK07395	553	L-aspartate oxidase; Provisional	97.68
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.66
PLN02815	594	L-aspartate oxidase	97.66
PRK06175	433	L-aspartate oxidase; Provisional	97.66
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.66
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	97.65
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	97.64
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.62
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.62
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.62
PRK06996	398	hypothetical protein; Provisional	97.61
PRK09897	534	hypothetical protein; Provisional	97.61
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.6
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	97.59
PRK08071	510	L-aspartate oxidase; Provisional	97.58
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.58
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.57
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.54
PRK08275	554	putative oxidoreductase; Provisional	97.53
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	97.53
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	97.52
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	97.51
PRK09077	536	L-aspartate oxidase; Provisional	97.5
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	97.48
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	97.47
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.44
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.41
PRK09564	444	coenzyme A disulfide reductase; Reviewed	97.41
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.39
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.37
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	97.37
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	97.37
COG3573	552	Predicted oxidoreductase [General function predict	97.34
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	97.3
PRK02106	560	choline dehydrogenase; Validated	97.28
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.24
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	97.22
KOG2852	380	consensus Possible oxidoreductase [General functio	97.22
PRK07846	451	mycothione reductase; Reviewed	97.18
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.16
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.13
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	97.13
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.13
PRK07512	513	L-aspartate oxidase; Provisional	97.11
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.1
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.06
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	97.04
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.02
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	97.02
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	96.92
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.92
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	96.81
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	96.74
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	96.74
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.71
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.7
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.68
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.67
PLN02785	587	Protein HOTHEAD	96.6
KOG2853	509	consensus Possible oxidoreductase [General functio	96.59
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.57
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.57
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.46
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.46
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.32
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.29
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.22
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.11
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.1
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.05
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.03
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.96
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.95
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.94
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.93
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.9
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	95.89
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.88
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.83
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.82
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	95.78
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.73
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	95.71
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.7
TIGR02053	463	MerA mercuric reductase. This model represents the	95.66
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.65
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	95.6
PRK06370	463	mercuric reductase; Validated	95.59
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.55
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.53
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.52
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.51
PRK07846	451	mycothione reductase; Reviewed	95.5
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.46
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.43
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	95.42
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	95.42
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.4
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.38
COG4716	587	Myosin-crossreactive antigen [Function unknown]	95.38
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.37
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.34
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.32
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.28
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	95.27
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.24
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.21
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.21
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.17
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	95.09
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.08
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.99
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	94.96
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.86
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.85
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.83
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.83
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.83
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.82
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.82
PRK07845	466	flavoprotein disulfide reductase; Reviewed	94.81
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	94.7
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.7
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	94.67
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.65
PTZ00058	561	glutathione reductase; Provisional	94.65
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.62
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	94.62
PRK06116	450	glutathione reductase; Validated	94.56
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	94.54
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.53
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.52
PLN02507	499	glutathione reductase	94.52
PRK10262	321	thioredoxin reductase; Provisional	94.48
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	94.47
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.45
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.45
PRK14989	847	nitrite reductase subunit NirD; Provisional	94.45
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.44
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.44
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.43
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	94.42
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.38
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.35
PLN02256	304	arogenate dehydrogenase	94.33
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.32
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.27
PRK04148	134	hypothetical protein; Provisional	94.23
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.22
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	94.21
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.21
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	94.2
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.17
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.15
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.13
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.07
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.05
PRK13748	561	putative mercuric reductase; Provisional	94.02
PRK14694	468	putative mercuric reductase; Provisional	94.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	93.98
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.97
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	93.95
PRK12831	464	putative oxidoreductase; Provisional	93.95
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.93
PRK07417	279	arogenate dehydrogenase; Reviewed	93.9
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	93.88
PLN02546	558	glutathione reductase	93.81
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.78
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	93.74
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	93.74
PRK14727	479	putative mercuric reductase; Provisional	93.72
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.67
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.66
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	93.64
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.6
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	93.57
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	93.56
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	93.5
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.49
PLN02602	350	lactate dehydrogenase	93.46
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	93.44
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.43
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	93.4
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.37
PTZ00052	499	thioredoxin reductase; Provisional	93.36
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	93.35
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.33
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.32
PRK06223	307	malate dehydrogenase; Reviewed	93.24
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	93.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.12
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	93.11
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.1
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.07
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	93.03
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	92.98
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	92.92
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	92.92
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.89
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	92.86
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.84
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.68
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	92.66
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	92.6
PLN02712	667	arogenate dehydrogenase	92.55
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	92.49
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	92.48
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	92.4
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	92.37
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	92.32
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.32
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.23
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	92.2
PLN02712	667	arogenate dehydrogenase	92.18
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.17
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	92.17
KOG0409	327	consensus Predicted dehydrogenase [General functio	92.1
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	92.1
PRK09496	453	trkA potassium transporter peripheral membrane com	92.08
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.07
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	92.05
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	92.01
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	91.97
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	91.96
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	91.94
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	91.83
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.81
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	91.79
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	91.69
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	91.67
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.49
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.44
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	91.42
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.4
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	91.3
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	91.19
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	91.19
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	91.17
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	91.11
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	91.11
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.07
COG2910	211	Putative NADH-flavin reductase [General function p	91.04
PRK09496	453	trkA potassium transporter peripheral membrane com	91.03
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	90.98
COG3349	485	Uncharacterized conserved protein [Function unknow	90.94
PTZ00117	319	malate dehydrogenase; Provisional	90.92
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.85
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	90.84
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	90.78
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	90.76
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	90.69
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	90.53
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	90.5
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	90.44
PRK06545	359	prephenate dehydrogenase; Validated	90.41
PRK15059	292	tartronate semialdehyde reductase; Provisional	90.36
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	90.3
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	90.18
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	90.05
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	90.05
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	89.99
PLN02494	477	adenosylhomocysteinase	89.98
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	89.97
PRK08017	256	oxidoreductase; Provisional	89.88
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	89.87
PRK07831	262	short chain dehydrogenase; Provisional	89.79

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=1.2e-25  Score=207.98  Aligned_cols=197  Identities=21%  Similarity=0.163  Sum_probs=120.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH----HH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF----FM  103 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~----f~  103 (260)
                      +..++|+|||||+|||++|+.|.++|++++||||.+++||.|.+.....    +...++|...-.++-+.+..+    |+
T Consensus         4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~----~~~ss~Y~~l~tn~pKe~~~~~dfpf~   79 (448)
T KOG1399|consen    4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVE----VVHSSVYKSLRTNLPKEMMGYSDFPFP   79 (448)
T ss_pred             CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCccc----ccccchhhhhhccCChhhhcCCCCCCc
Confidence            3468999999999999999999999999999999999999998653111    122222221111111111110    11


Q ss_pred             HH-HHHHHhhcCccccCCC--CCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH------hhh
Q 024958          104 DV-YRQLRQALGFLLRTPD--AGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR------QSL  174 (260)
Q Consensus       104 ~~-~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~------~p~  174 (260)
                      +- .+.+.....++.|+.+  .+|.....+.+...+...+.... ..|.+....+..  ...+++++++++      +|+
T Consensus        80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~-gkW~V~~~~~~~--~~~~~ifd~VvVctGh~~~P~  156 (448)
T KOG1399|consen   80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDK-GKWRVTTKDNGT--QIEEEIFDAVVVCTGHYVEPR  156 (448)
T ss_pred             ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccC-CceeEEEecCCc--ceeEEEeeEEEEcccCcCCCC
Confidence            11 1111111111222221  12222222222221111111110 113332222111  034566666665      599


Q ss_pred             ccCCCC--CCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          175 YRGGPG--KVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       175 ~p~~pG--~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      +|.++|  ++.|.|+++|| ++|+.++.|.  ++.|+|||+|+||.||+.+|+..|++|+.+
T Consensus       157 ~P~~~g~~~~~f~G~~iHS-~~Yk~~e~f~--~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~  215 (448)
T KOG1399|consen  157 IPQIPGPGIESFKGKIIHS-HDYKSPEKFR--DKVVLVVGCGNSGMDISLDLLRVAKEVHLS  215 (448)
T ss_pred             CCcCCCCchhhcCCcceeh-hhccCccccc--CceEEEECCCccHHHHHHHHHHhccCccee
Confidence            999888  78999999999 9999999998  899999999999999999999999988754

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.89  E-value=6.4e-27  Score=221.79  Aligned_cols=182  Identities=16%  Similarity=0.155  Sum_probs=101.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CCcEeeeceeEEcCcchHHHHHH----H-----
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGNHIEMGLHIFFGCYNNLFRLM----K-----   99 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g~~~d~g~~~~~~~~~~~~~~~----~-----   99 (260)
                      .++|+|||||++||++|..|.+.|++++||||++.+||.|+..... +|.     ..+|.+...|..+.+    +     
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~-----~~~y~sl~~n~sk~~~~fsdfp~p~   75 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGR-----SSVYDSLHTNTSKEMMAFSDFPFPE   75 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSE-----GGGSTT-B-SS-GGGSCCTTS-HCC
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCc-----cccccceEEeeCchHhcCCCcCCCC
Confidence            3789999999999999999999999999999999999999853211 111     011111000000000    0     


Q ss_pred             --------HHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcC-C--cchhhHHHhcCCCCCCCCChhHHHHH
Q 024958          100 --------KFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGE-G--QGSLLQCVLTPGNPYMPLPNDEIIRR  168 (260)
Q Consensus       100 --------~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~sl~~~v~~~~~~~~~~~~~el~~a  168 (260)
                              .-+.+..+.+.+..++           ...+.+++.+.-.+. .  .....|.+....   ......+.|++
T Consensus        76 ~~p~f~~~~~v~~Yl~~Ya~~f~L-----------~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~---~g~~~~~~fD~  141 (531)
T PF00743_consen   76 DYPDFPSHSEVLEYLESYAEHFGL-----------RKHIRFNTEVVSVERDPDFSATGKWEVTTEN---DGKEETEEFDA  141 (531)
T ss_dssp             CCSSSEBHHHHHHHHHHHHHHTTG-----------GGGEETSEEEEEEEEETTTT-ETEEEEEETT---TTEEEEEEECE
T ss_pred             CCCCCCCHHHHHHHHHHHHhhhCC-----------cceEEEccEEeEeeeccccCCCceEEEEeec---CCeEEEEEeCe
Confidence                    0000111111111111           111112211111110 0  000112222111   11122344555


Q ss_pred             HHH------hhhccC--CCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          169 VAR------QSLYRG--GPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       169 v~~------~p~~p~--~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      +++      .|++|.  +||++.|+|+++|| ++|+.|..|.  ||+|+|+|.|+||.|||.||+++|++|+.
T Consensus       142 VvvatG~~~~P~~P~~~~~G~e~F~G~i~HS-~~yr~~~~f~--gKrVlVVG~g~Sg~DIa~el~~~a~~v~~  211 (531)
T PF00743_consen  142 VVVATGHFSKPNIPEPSFPGLEKFKGEIIHS-KDYRDPEPFK--GKRVLVVGGGNSGADIAVELSRVAKKVYL  211 (531)
T ss_dssp             EEEEE-SSSCESB-----CTGGGHCSEEEEG-GG--TGGGGT--TSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred             EEEcCCCcCCCCCChhhhhhhhcCCeeEEcc-ccCcChhhcC--CCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence            544      788995  99999999999999 9999999987  99999999999999999999999988654

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.88  E-value=3.1e-24  Score=199.93  Aligned_cols=193  Identities=15%  Similarity=0.122  Sum_probs=121.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHH-----HHHHHHH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL-----FRLMKKF  101 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~-----~~~~~~~  101 (260)
                      ....+|+|||||++||++|++|+++|.+ ++||||++.+||.|+... +++.+++...+.+...+...     +.-..++
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-y~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~   84 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-YPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEI   84 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-CCceEECCchheeccCCCccCCcccCCCcccH
Confidence            4568999999999999999999999998 999999999999998654 78888877665553211111     1111110


Q ss_pred             HHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHH--HHHhhhccCCC
Q 024958          102 FMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRR--VARQSLYRGGP  179 (260)
Q Consensus       102 f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~a--v~~~p~~p~~p  179 (260)
                       .+...++.+..+.           -.++.+...+...++.+..-.|.+....+.......+.++.+  ....|++|+|+
T Consensus        85 -~~y~~~~~~~y~~-----------~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~  152 (443)
T COG2072          85 -KDYIKDYLEKYGL-----------RFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFA  152 (443)
T ss_pred             -HHHHHHHHHHcCc-----------eeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCC
Confidence             0111111111111           011112222222222222111222211111100112222222  23389999999


Q ss_pred             CCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHHHH
Q 024958          180 GKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRK  236 (260)
Q Consensus       180 G~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~~~  236 (260)
                      |+++|.|.++|| ++|+.+.+|.  ||+|+|||+|+||+||+.+|.+.+++|+.+-.
T Consensus       153 G~~~f~g~~~HS-~~~~~~~~~~--GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qR  206 (443)
T COG2072         153 GLDEFKGRILHS-ADWPNPEDLR--GKRVLVIGAGASAVDIAPELAEVGASVTLSQR  206 (443)
T ss_pred             CccCCCceEEch-hcCCCccccC--CCeEEEECCCccHHHHHHHHHhcCCeeEEEec
Confidence            999999999999 8888887777  99999999999999999999999988876543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.81  E-value=1.7e-22  Score=189.03  Aligned_cols=60  Identities=15%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             hhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          172 QSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       172 ~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      .|++|++||++.|.|.++|+ +.|+.+..|.  ++.|+|+|+|+||.++|.+|++.+++|+.+
T Consensus       174 ~P~~P~ipG~~~f~G~~iHs-~~yr~~~~~~--gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~  233 (461)
T PLN02172        174 EPNVAHIPGIKSWPGKQIHS-HNYRVPDPFK--NEVVVVIGNFASGADISRDIAKVAKEVHIA  233 (461)
T ss_pred             CCcCCCCCCcccCCceEEEe-cccCCccccC--CCEEEEECCCcCHHHHHHHHHHhCCeEEEE
Confidence            78999999999999999999 9999999987  899999999999999999999999998763

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.58  E-value=8.2e-18  Score=140.32  Aligned_cols=175  Identities=17%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             EEECCCHHHHHHHHHHHHCCCc-EEEEcccCcccccceeeecCCCcEeeeceeEEc---------CcchHHHHHHH----
Q 024958           34 AIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF---------GCYNNLFRLMK----   99 (260)
Q Consensus        34 ~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~---------~~~~~~~~~~~----   99 (260)
                      +|||||++||++|+.|.++|++ ++|||+++.+||.|..+.......   .+..+.         ....+....+.    
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLH---SPSFFSSDFGLPDFESFSFDDSPEWRWPHD   77 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-B---SSSCCTGGSS--CCCHSCHHHHHHHHHSBS
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccc---cCccccccccCCcccccccccCCCCCCCcc
Confidence            6999999999999999999999 999999999999998543221110   011110         00000000000    


Q ss_pred             ----HHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH--hh
Q 024958          100 ----KFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR--QS  173 (260)
Q Consensus       100 ----~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~--~p  173 (260)
                          +.+.+..+++.+..++.             ..+...+.-.+.....|  .+.....  .....+.++.+...  .|
T Consensus        78 ~~~~~~v~~yl~~~~~~~~l~-------------i~~~~~V~~v~~~~~~w--~v~~~~~--~~~~a~~VVlAtG~~~~p  140 (203)
T PF13738_consen   78 FPSGEEVLDYLQEYAERFGLE-------------IRFNTRVESVRRDGDGW--TVTTRDG--RTIRADRVVLATGHYSHP  140 (203)
T ss_dssp             SEBHHHHHHHHHHHHHHTTGG-------------EETS--EEEEEEETTTE--EEEETTS---EEEEEEEEE---SSCSB
T ss_pred             cCCHHHHHHHHHHHHhhcCcc-------------cccCCEEEEEEEeccEE--EEEEEec--ceeeeeeEEEeeeccCCC
Confidence                00111111221111110             00111111111111111  1111010  11224445555544  78


Q ss_pred             hccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          174 LYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       174 ~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      .+|++|| +.+. ..+|+ ..++.+..|.  ++.|+|+|.|+||.|++.+|++.+++|+.
T Consensus       141 ~~p~~~g-~~~~-~~~h~-~~~~~~~~~~--~k~V~VVG~G~SA~d~a~~l~~~g~~V~~  195 (203)
T PF13738_consen  141 RIPDIPG-SAFR-PIIHS-ADWRDPEDFK--GKRVVVVGGGNSAVDIAYALAKAGKSVTL  195 (203)
T ss_dssp             ---S-TT-GGCS-EEEEG-GG-STTGGCT--TSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred             Ccccccc-cccc-ceEeh-hhcCChhhcC--CCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence            8999999 3334 66888 6777777666  89999999999999999999999987765

...

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.56  E-value=7.4e-15  Score=101.91  Aligned_cols=65  Identities=40%  Similarity=0.762  Sum_probs=56.7

Q ss_pred             EECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC--cchHHHHHHHH
Q 024958           35 IIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK  100 (260)
Q Consensus        35 VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~--~~~~~~~~~~~  100 (260)
                      |||||++||++|+.|+++|++|+|||+++.+||++++.. .++..+|.|++++..  .++++++++++
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~l~~~   67 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR-IPGYRFDLGAHYFFPPDDYPNLFRLLRE   67 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE-ETTEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE-ECCEEEeeccEEEeCCCCchHHHHHHcC
Confidence            899999999999999999999999999999999999887 478999999999976  46777777664

...

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.49  E-value=4.9e-14  Score=130.37  Aligned_cols=71  Identities=56%  Similarity=1.042  Sum_probs=69.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ++|+|+|||++||+||+.|+++|++|+|+|+++.+||.+.+|.+.+|...+.|.|+|.+.|.|+++++.++
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~n~~~ll~~~   71 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYYNLLTLLKEL   71 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHHHHHHHhhhC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999887

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.43  E-value=3.2e-13  Score=127.29  Aligned_cols=73  Identities=41%  Similarity=0.736  Sum_probs=65.6

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHH
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM   98 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~   98 (260)
                      ..+.+++|+|||||+|||+||..|.+.|++|+|||+.+++|||.+++....+..+|.|.+++++.+.+.+..+
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~npl~~l   83 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYNNPLALL   83 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCccHHHHH
Confidence            4456789999999999999999999999999999999999999999987777779999999999998665543

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.37  E-value=7.6e-13  Score=123.25  Aligned_cols=70  Identities=34%  Similarity=0.561  Sum_probs=62.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ++|+|||||+|||+||+.|+++|  ++|+|||+++++||++++.. .+|..+|.|+|++.+.+++++.+++++
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l   72 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKPSAPALVKEL   72 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcHHHHHHHHHc
Confidence            57999999999999999999988  89999999999999999876 578899999998888888877777664

>PLN02487 zeta-carotene desaturase

Probab=99.36  E-value=2.9e-12  Score=122.76  Aligned_cols=87  Identities=91%  Similarity=1.485  Sum_probs=75.5

Q ss_pred             CCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHH
Q 024958           15 PKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNL   94 (260)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~   94 (260)
                      |..+.++.+.....+.++|+|||||++||++|+.|.++|++|+|||+.+.+||.+.++.+..|..+|.|.|++.+.++++
T Consensus        60 ~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~~~  139 (569)
T PLN02487         60 PKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYNNL  139 (569)
T ss_pred             cccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcHHH
Confidence            34566666655556678999999999999999999999999999999999999999887667999999999999989888


Q ss_pred             HHHHHHH
Q 024958           95 FRLMKKF  101 (260)
Q Consensus        95 ~~~~~~~  101 (260)
                      +++++++
T Consensus       140 ~~ll~~L  146 (569)
T PLN02487        140 FRLMKKV  146 (569)
T ss_pred             HHHHHhc
Confidence            8887665

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.36  E-value=1.4e-12  Score=122.05  Aligned_cols=71  Identities=30%  Similarity=0.445  Sum_probs=65.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .++|+|||||++||+||++|.++    |++|+|||+++++||++++.. .+|..+|.|+|+++..+++++++++++
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~~~~~l~~~l   76 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKKSAPDLVKDL   76 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCChHHHHHHHHc
Confidence            36899999999999999999999    999999999999999999875 678999999999999888888887765

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07208 hypothetical protein; Provisional

Probab=99.35  E-value=2.1e-12  Score=121.67  Aligned_cols=72  Identities=35%  Similarity=0.569  Sum_probs=66.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ..++|+|||||++||+||+.|.++|++|+|+|+++++||++++.. .+|..+|.|+|++...+++++++++++
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~~~~~l~~~l   74 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSPEVMDLWNEI   74 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCHHHHHHHHHh
Confidence            457899999999999999999999999999999999999998765 678999999999998899998888876

>PLN02268 probable polyamine oxidase

Probab=99.32  E-value=3e-12  Score=119.23  Aligned_cols=70  Identities=34%  Similarity=0.541  Sum_probs=59.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc--chHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC--YNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~--~~~~~~~~~~~  101 (260)
                      ++|+|||||+|||+||+.|.++|++|+|||+++++||++++.. ..|..+|+|++|+++.  .+.+.++.+++
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~~~~~~~l~~~l   72 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCNENPLAPLIGRL   72 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCCCchHHHHHHHh
Confidence            4899999999999999999999999999999999999998764 5688899999999863  33455555553

>PRK07233 hypothetical protein; Provisional

Probab=99.30  E-value=3.3e-12  Score=118.24  Aligned_cols=69  Identities=36%  Similarity=0.616  Sum_probs=63.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +|+|||||++||+||+.|+++|++|+|||+++++||+++++. .+|..+|.|.|++...++++.++++++
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~~~~~l~~~l   69 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDEALLELLDEL   69 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccHHHHHHHHHc
Confidence            699999999999999999999999999999999999998876 568899999999988888888887765

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.29  E-value=3.6e-12  Score=119.57  Aligned_cols=70  Identities=24%  Similarity=0.404  Sum_probs=62.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ++|+|||||++||+||+.|.+.      |++|+|||+++++||++++.. ..|..+|.|+|++...+.+++++++++
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~~~~~l~~~l   77 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNEHVMPLVKDL   77 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCHHHHHHHHHc
Confidence            4799999999999999999986      379999999999999999876 568899999999988888888877775

>PLN02576 protoporphyrinogen oxidase

Probab=99.29  E-value=6.5e-12  Score=118.83  Aligned_cols=73  Identities=27%  Similarity=0.408  Sum_probs=63.5

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      ..+.++|+|||||++||+||++|.++ |++|+|||+++++||++++.. .+|..+|.|+|++...++.+..+.+.
T Consensus         9 ~~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~   82 (496)
T PLN02576          9 AASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDPELTSAVDS   82 (496)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcHHHHHHHHc
Confidence            34557999999999999999999999 999999999999999999876 57899999999998777766555443

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.29  E-value=7.2e-12  Score=117.25  Aligned_cols=70  Identities=50%  Similarity=0.877  Sum_probs=64.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +|+|||||++||++|+.|.++|++|+|||+++.+||+++++...+|..+|.|.|++...+++++++++++
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l   70 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLLKEL   70 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCchHHHHHHHc
Confidence            5899999999999999999999999999999999999988765678999999999999899988888765

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.28  E-value=6.6e-12  Score=118.75  Aligned_cols=70  Identities=30%  Similarity=0.504  Sum_probs=59.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcch-HHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRLMK   99 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~-~~~~~~~   99 (260)
                      +.+||+|||||++||+||.+|+++|++|+||||++.+||+.++.. ..|+++|.|++++..... .++..+.
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~Gf~fd~G~~~~~~~~~~~~~~~l~   72 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LDGFRFDTGPSWYLMPDPGPLFRELG   72 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-ccceEeccCcceeecCchHHHHHHhc
Confidence            568999999999999999999999999999999999999999886 569999999998865332 4444443

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.27  E-value=1e-11  Score=117.09  Aligned_cols=70  Identities=84%  Similarity=1.393  Sum_probs=65.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +|+|||||++||++|+.|+++|++|+|||+++.+||+++++...+|..+|.|+|++.+.+++++++++++
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~~~~~~~~~l   70 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYANLFRLMKKV   70 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchHHHHHHHHHc
Confidence            5899999999999999999999999999999999999998766689999999999999999988887765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.26  E-value=1.2e-11  Score=109.17  Aligned_cols=75  Identities=32%  Similarity=0.612  Sum_probs=66.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee---cCCCcEeeeceeEEcC-cchHHHHHHHHH
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHIFFG-CYNNLFRLMKKF  101 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~---~~~g~~~d~g~~~~~~-~~~~~~~~~~~~  101 (260)
                      +..+.++|+|||+|++||+||+.|.++ ++|++||+++++||..++..   +..|..+|.|.++|+. +|+++.++++.+
T Consensus         4 ~~~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~i   82 (447)
T COG2907           4 QPHPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKTI   82 (447)
T ss_pred             CCCCCcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHHc
Confidence            345778999999999999999999876 89999999999999998863   4567788999999996 899999999887

>PLN02612 phytoene desaturase

Probab=99.22  E-value=4.7e-11  Score=114.93  Aligned_cols=73  Identities=49%  Similarity=0.808  Sum_probs=67.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .+++|+|||||++||++|++|.++|++|+|+|+++.+||+..++.+.+|..+|.|.|++.+.++++.++++++
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~~~~~ll~el  164 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNVQNLFGEL  164 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCchHHHHHHHh
Confidence            3578999999999999999999999999999999999999998875688999999999999999988887775

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.21  E-value=4.2e-11  Score=109.64  Aligned_cols=70  Identities=36%  Similarity=0.591  Sum_probs=61.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~  100 (260)
                      .++|+|||||+|||+||.+|.+.|+ +|+|||+.+++|||+++.. +.+..+++|++|+++ .-+.+++..++
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~-~~d~~ielGAqwihG~~gNpVY~la~~   92 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIP-FADGVIELGAQWIHGEEGNPVYELAKE   92 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEE-cCCCeEeecceeecCCCCChHHHHHHH
Confidence            3689999999999999999997775 9999999999999999887 555589999999998 56777777664

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.18  E-value=5e-11  Score=110.47  Aligned_cols=70  Identities=34%  Similarity=0.600  Sum_probs=62.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ++|+|||||++||+|||+|++++  .+++|||+.+++||..++.. .+|+.+|.|+|.+...-..+.+++.++
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~~~l~li~eL   72 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKEEILDLIKEL   72 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchHHHHHHHHHh
Confidence            47999999999999999999999  99999999999999999885 899999999999876546666666665

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.16  E-value=6.4e-11  Score=112.31  Aligned_cols=56  Identities=29%  Similarity=0.516  Sum_probs=52.9

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (260)
Q Consensus        33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~   89 (260)
                      |+|||||++||+||..|+++|++|+|+|+++.+||+++++. .+|+.+|.|++++..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~   56 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITM   56 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcc
Confidence            68999999999999999999999999999999999999887 589999999999864

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.13  E-value=8.6e-11  Score=111.21  Aligned_cols=58  Identities=33%  Similarity=0.576  Sum_probs=54.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~   89 (260)
                      +||+|||||++||+||..|+++|++|+|||+++.+||+.+++. .+|+.+|.|+|++..
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~   59 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAG   59 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEe
Confidence            6899999999999999999999999999999999999999886 589999999999864

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>PLN02568 polyamine oxidase

Probab=99.12  E-value=1.7e-10  Score=110.19  Aligned_cols=70  Identities=30%  Similarity=0.551  Sum_probs=59.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc-hHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY-NNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-----~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~-~~~~~~~~~  100 (260)
                      .++|+|||||++||++|+.|++.|     ++|+|||+++++||++++.. ..|..+|.|++++++.. ..++++.++
T Consensus         5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~~~~~~~l~~~   80 (539)
T PLN02568          5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIGGSPVYKIAQE   80 (539)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCCCCHHHHHHHH
Confidence            468999999999999999999887     89999999999999999876 56889999999998653 444444444

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.09  E-value=2.8e-10  Score=97.57  Aligned_cols=69  Identities=28%  Similarity=0.503  Sum_probs=59.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .+|+|||||++||+||+.|+.+|++|+||||...+|||..+.. .++..+|.|...|........+..+.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR-l~~g~~DhGAqYfk~~~~~F~~~Ve~   70 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR-LDGGRFDHGAQYFKPRDELFLRAVEA   70 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec-cCCccccccceeecCCchHHHHHHHH
Confidence            4699999999999999999999999999999999999999876 67778999999997766555555443

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=99.09  E-value=1.6e-11  Score=107.87  Aligned_cols=166  Identities=17%  Similarity=0.108  Sum_probs=87.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec---CCCcEeeeceeEEcCcchHHHHHHHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID---KHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYR  107 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~---~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~  107 (260)
                      +||+|||||++||++|..|++.|++|+|+|+++ +||.|.....   +++...     .  ....++...+.+       
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~-----~--~~~~~~~~~l~~-------   65 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTTTTEVENYPGFPE-----G--ISGPELMEKMKE-------   65 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceeecccccccCCCCC-----C--CChHHHHHHHHH-------
Confidence            489999999999999999999999999999886 7887753210   011000     0  000111111111       


Q ss_pred             HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958          108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD  187 (260)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~  187 (260)
                      .+. ..++..+...          +..    .+.....+  .+.....  .....+.++.+....|..|.+||.+.|.+.
T Consensus        66 ~~~-~~gv~~~~~~----------v~~----v~~~~~~~--~v~~~~~--~~~~~d~liiAtG~~~~~~~i~g~~~~~~~  126 (300)
T TIGR01292        66 QAV-KFGAEIIYEE----------VIK----VDLSDRPF--KVKTGDG--KEYTAKAVIIATGASARKLGIPGEDEFLGR  126 (300)
T ss_pred             HHH-HcCCeEEEEE----------EEE----EEecCCee--EEEeCCC--CEEEeCEEEECCCCCcccCCCCChhhcCCc
Confidence            111 1121110000          000    00000000  0000000  012223333444446667778888777665


Q ss_pred             CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ..|. ..+...  ....+++++|+|+|.+|.++|.+|.+.+++|+.
T Consensus       127 ~~~~-~~~~~~--~~~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~  169 (300)
T TIGR01292       127 GVSY-CATCDG--PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTL  169 (300)
T ss_pred             cEEE-eeecCh--hhcCCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence            4443 112112  223478899999999999999999987766554

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=99.07  E-value=3.7e-11  Score=121.19  Aligned_cols=42  Identities=29%  Similarity=0.485  Sum_probs=39.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||+|||+||+.|+++|++|+|||+.+.+||.++
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            368999999999999999999999999999999999999876

>PRK10262 thioredoxin reductase; Provisional

Probab=99.06  E-value=1.3e-11  Score=110.53  Aligned_cols=170  Identities=14%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKKFFMDVYR  107 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~~f~~~~~  107 (260)
                      ..++|+|||||++||+||..|+++|+++++||+. ..||.+......    .++. -.... ..+.+.+.+.+    ...
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~----~~~   74 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTTTTEV----ENWP-GDPNDLTGPLLMERMHE----HAT   74 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceecCceE----CCCC-CCCCCCCHHHHHHHHHH----HHH
Confidence            4589999999999999999999999999999964 678886532110    0000 00000 00111111111    111


Q ss_pred             HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958          108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD  187 (260)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~  187 (260)
                      .+    +. ....+         .+.. .+.   ....+  .+....   .....+.++-+....|..|++||.+.|.+.
T Consensus        75 ~~----~~-~~~~~---------~v~~-v~~---~~~~~--~v~~~~---~~~~~d~vilAtG~~~~~~~i~g~~~~~~~  131 (321)
T PRK10262         75 KF----ET-EIIFD---------HINK-VDL---QNRPF--RLTGDS---GEYTCDALIIATGASARYLGLPSEEAFKGR  131 (321)
T ss_pred             HC----CC-EEEee---------EEEE-EEe---cCCeE--EEEecC---CEEEECEEEECCCCCCCCCCCCCHHHcCCC
Confidence            11    00 00000         0000 000   00000  000000   011233344444446677888898877776


Q ss_pred             CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      ..|....   ...+...++.++|+|.|++|.++|.+|++.+++|+.+
T Consensus       132 ~v~~~~~---~~~~~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv  175 (321)
T PRK10262        132 GVSACAT---CDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLI  175 (321)
T ss_pred             cEEEeec---CCHHHcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEE
Confidence            6554221   2334445889999999999999999999887776553

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.05  E-value=4.8e-10  Score=98.22  Aligned_cols=71  Identities=31%  Similarity=0.446  Sum_probs=62.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CC-cEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HG-NHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g-~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .|++|||||++|+..|..+++.|+.|.|+||.+++||++++..+. .| ..+.+|+|+++...+++|..+..+
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F   74 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQF   74 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhh
Confidence            689999999999999999999999999999999999999976653 34 444889999999999999988775

>TIGR02730 carot_isom carotene isomerase

Probab=99.03  E-value=4.1e-10  Score=106.67  Aligned_cols=58  Identities=31%  Similarity=0.617  Sum_probs=54.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~   89 (260)
                      .||+|||||++||++|..|+++|++|+||||++.+||+.+++. .+|+.+|.|++++.+
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~   58 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFG   58 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhhee
Confidence            4799999999999999999999999999999999999999876 589999999998754

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PLN02676 polyamine oxidase

Probab=99.03  E-value=7.2e-10  Score=104.89  Aligned_cols=70  Identities=31%  Similarity=0.481  Sum_probs=59.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcC----cchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG----CYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~----~~~~~~~~~~~  100 (260)
                      .++|+|||||++||+||++|+++|+ +|+|||+++++||++.+.. ..|..+|.|.+|++.    ..+.++++.++
T Consensus        26 ~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~  100 (487)
T PLN02676         26 SPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANK  100 (487)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHh
Confidence            4689999999999999999999998 6999999999999998764 678899999999964    23445554443

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.00  E-value=1.2e-09  Score=99.89  Aligned_cols=70  Identities=27%  Similarity=0.407  Sum_probs=59.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcE-eeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~-~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .||+|||||++|+++|++|++.|.+|+|+|+++.+||.+.+.. ..+.. .+.|+|+++.....++..+.++
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~~   72 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQYVWDYISPF   72 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcHHHHHHHHhh
Confidence            5899999999999999999999999999999999999877654 34433 4899999988788887776654

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.98  E-value=1.2e-09  Score=103.84  Aligned_cols=71  Identities=27%  Similarity=0.437  Sum_probs=60.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .++|+|||||++||+||++|++.    |++|+|||+++.+||++..+.. .+|+.++.|+.. ...|.+++++++.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~~l~~ll~~i   97 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFECLWDLFRSI   97 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHHHHHHHHHhc
Confidence            47999999999999999999996    6899999999999999986532 468888888765 67788888887664

>PLN02529 lysine-specific histone demethylase 1

Probab=98.98  E-value=1.5e-09  Score=106.63  Aligned_cols=66  Identities=35%  Similarity=0.520  Sum_probs=56.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CC--cEeeeceeEEcCcchH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HG--NHIEMGLHIFFGCYNN   93 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g--~~~d~g~~~~~~~~~~   93 (260)
                      ...++|+|||||++||+||..|+++|++|+|||+++++||++++.... +|  ..+|+|++|+++...+
T Consensus       158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~n  226 (738)
T PLN02529        158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDLGGSVITGIHAN  226 (738)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEecCCeeccccccc
Confidence            456899999999999999999999999999999999999999876532 13  3789999999876544

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.97  E-value=8.3e-11  Score=112.11  Aligned_cols=170  Identities=14%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQ  108 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~~  108 (260)
                      ..+||+|||||++||+||..|++.|++|+|++.  .+||+|....     .++.-+.+.......+...+       ...
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~~~~-----~~~~~~~~~~~~~~~l~~~l-------~~~  275 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVLDTM-----GIENFISVPETEGPKLAAAL-------EEH  275 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeeeccC-----cccccCCCCCCCHHHHHHHH-------HHH
Confidence            358999999999999999999999999999976  4899885311     11100000000111111111       111


Q ss_pred             HHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCCC
Q 024958          109 LRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQ  188 (260)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~~  188 (260)
                      +..+ ++..+..         ..+...    ......  +.+......  ....+.++-+....+..|++||.+.|.+..
T Consensus       276 ~~~~-gv~i~~~---------~~V~~I----~~~~~~--~~V~~~~g~--~i~a~~vViAtG~~~r~~~ipG~~~~~~~~  337 (517)
T PRK15317        276 VKEY-DVDIMNL---------QRASKL----EPAAGL--IEVELANGA--VLKAKTVILATGARWRNMNVPGEDEYRNKG  337 (517)
T ss_pred             HHHC-CCEEEcC---------CEEEEE----EecCCe--EEEEECCCC--EEEcCEEEECCCCCcCCCCCCCHHHhcCce
Confidence            2111 2111100         000000    000000  000000000  112223333333355667788887787754


Q ss_pred             CCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          189 KTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       189 ~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      .|....   ...+...++.++|+|+|++|.++|..|+..+++|++
T Consensus       338 v~~~~~---~~~~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl  379 (517)
T PRK15317        338 VAYCPH---CDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTV  379 (517)
T ss_pred             EEEeec---cCchhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            443111   122223588999999999999999999988777654

>PRK12831 putative oxidoreductase; Provisional

Probab=98.97  E-value=2.9e-10  Score=106.95  Aligned_cols=42  Identities=38%  Similarity=0.529  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+.+.+||.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            458999999999999999999999999999999999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.97  E-value=5e-10  Score=105.55  Aligned_cols=43  Identities=42%  Similarity=0.506  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++||+||+.|++  .|++|+|||+.+.+||.+++
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            45789999999999999999987  79999999999999998763

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.94  E-value=2.3e-09  Score=98.19  Aligned_cols=72  Identities=32%  Similarity=0.443  Sum_probs=60.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      +...+|+|||||++||++|+.|.+.|++|+|+|.++++|||+.+... .+...|.|-+++.++........++
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~~~l~~~k~   76 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHDALLAYAKE   76 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccchhhhhhHHh
Confidence            45689999999999999999999999999999999999999987764 7788888877777755555555544

>PRK14694 putative mercuric reductase; Provisional

Probab=98.92  E-value=3.3e-10  Score=106.64  Aligned_cols=41  Identities=32%  Similarity=0.550  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~   45 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV   45 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence            3579999999999999999999999999999986 6999986

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.92  E-value=3.1e-10  Score=106.00  Aligned_cols=42  Identities=36%  Similarity=0.501  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC-cccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~-~~GG~~~   70 (260)
                      ...||+|||||++|+++|++|+++|++|+|+|+.+ .+||.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~   44 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI   44 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence            35799999999999999999999999999999976 5899985

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.92  E-value=5.1e-10  Score=104.49  Aligned_cols=42  Identities=29%  Similarity=0.418  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-ccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~~~   70 (260)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.+. +||.|.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            357999999999999999999999999999999874 699864

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.91  E-value=1.4e-10  Score=108.77  Aligned_cols=43  Identities=26%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ...||+|||||++|+++|++|+++|++|+|+|+.+.+||.|..
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~   46 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTH   46 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccc
Confidence            4579999999999999999999999999999999999999853

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=98.88  E-value=6.5e-09  Score=102.79  Aligned_cols=66  Identities=33%  Similarity=0.517  Sum_probs=55.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCC-C--cEeeeceeEEcCcchH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-G--NHIEMGLHIFFGCYNN   93 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~-g--~~~d~g~~~~~~~~~~   93 (260)
                      ...++|+|||||++||++|+.|.++|++|+|+|+++++||++++....+ +  ..+|+|++|+++...+
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~~~n  304 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKGDGVVAAADLGGSVLTGINGN  304 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCCCCcceeccCCceeecCCCcc
Confidence            3468899999999999999999999999999999999999998775332 1  2579999999876544

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=4.2e-10  Score=100.09  Aligned_cols=169  Identities=17%  Similarity=0.131  Sum_probs=88.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC-cchHHHHHHHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG-CYNNLFRLMKKFFMDVYR  107 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~-~~~~~~~~~~~~f~~~~~  107 (260)
                      ...||+|||||++||+||.++.++|++++|++....+||......+..++.     -+-.. .-+++.+.+.+       
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venyp-----g~~~~~~g~~L~~~~~~-------   69 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYP-----GFPGGILGPELMEQMKE-------   69 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCC-----CCccCCchHHHHHHHHH-------
Confidence            347999999999999999999999999444444556777655432221111     00000 01222222221       


Q ss_pred             HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCC
Q 024958          108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTD  187 (260)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~  187 (260)
                      + ....+......          .+.    ..+.....  -.+.+..+   ......++-+....+..|.+||-+.|.|+
T Consensus        70 ~-a~~~~~~~~~~----------~v~----~v~~~~~~--F~v~t~~~---~~~ak~vIiAtG~~~~~~~~~~e~e~~g~  129 (305)
T COG0492          70 Q-AEKFGVEIVED----------EVE----KVELEGGP--FKVKTDKG---TYEAKAVIIATGAGARKLGVPGEEEFEGK  129 (305)
T ss_pred             H-HhhcCeEEEEE----------EEE----EEeecCce--EEEEECCC---eEEEeEEEECcCCcccCCCCCcchhhcCC
Confidence            1 11111100000          000    00000000  00111111   12333444444556677777776678775


Q ss_pred             CCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          188 QKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       188 ~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      -.|-   .-.... -+.++.++|+|.|+|+++-|..|++.+++|+.
T Consensus       130 gv~y---c~~cdg-~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl  171 (305)
T COG0492         130 GVSY---CATCDG-FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTL  171 (305)
T ss_pred             ceEE---eeecCc-cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence            4332   101122 23377899999999999999999999988776

>PLN03000 amine oxidase

Probab=98.85  E-value=7.1e-09  Score=102.76  Aligned_cols=68  Identities=31%  Similarity=0.486  Sum_probs=58.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC---CCcEeeeceeEEcCcchHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK---HGNHIEMGLHIFFGCYNNLFR   96 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~---~g~~~d~g~~~~~~~~~~~~~   96 (260)
                      ..++|+|||||++||++|+.|.+.|++|+|+|+++++||++++....   .+..+|+|.+|+++...+.+.
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~~npl~  253 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAADLGGSVLTGTLGNPLG  253 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEeecCCeEEeCCCccHHH
Confidence            35799999999999999999999999999999999999999987532   256789999999877655443

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.84  E-value=9.2e-10  Score=103.31  Aligned_cols=41  Identities=34%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||++|+++|.+|++.|++|+|+|+ +.+||.|.
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            457999999999999999999999999999999 78999986

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.84  E-value=1.6e-09  Score=107.67  Aligned_cols=42  Identities=40%  Similarity=0.601  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+.+.+||.++
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            457999999999999999999999999999999999999875

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=98.83  E-value=7.3e-09  Score=93.92  Aligned_cols=74  Identities=23%  Similarity=0.360  Sum_probs=61.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEE--EEcccCcccccceeeecCCCcEeeeceeEEcCcch---HHHHHHHHH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVD--IYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN---NLFRLMKKF  101 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~--v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~---~~~~~~~~~  101 (260)
                      .+.++|+|+|||++||++||+|++++-+|+  +||+.+++||.+++....++..+|.|+..+.+.-.   ++..++.++
T Consensus         9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dL   87 (491)
T KOG1276|consen    9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDL   87 (491)
T ss_pred             eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHc
Confidence            456899999999999999999999987664  59999999999998555788999999999977654   555555554

>PRK14727 putative mercuric reductase; Provisional

Probab=98.83  E-value=1.6e-09  Score=102.44  Aligned_cols=43  Identities=37%  Similarity=0.567  Sum_probs=40.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .+.||+|||||++|+++|++|++.|.+|+|+|+.+.+||.|..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n   57 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN   57 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence            4579999999999999999999999999999999899999863

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=98.82  E-value=4.5e-09  Score=104.87  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..++|+|||||+|||++|+.|+++|++|+|||+.+..|+.
T Consensus       382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            5689999999999999999999999999999998776664

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.82  E-value=1.9e-09  Score=101.09  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||..+++.|++|+|+|+. .+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            379999999999999999999999999999995 6899875

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06370 mercuric reductase; Validated

Probab=98.82  E-value=2.2e-09  Score=100.98  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=37.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            3589999999999999999999999999999985 6888875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.81  E-value=4.2e-10  Score=108.18  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++||+||..|+++|++|+|||++ .+||.+.
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            379999999999999999999999999999995 6898865

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR02053 MerA mercuric reductase

Probab=98.80  E-value=7e-10  Score=104.25  Aligned_cols=39  Identities=28%  Similarity=0.524  Sum_probs=36.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+++|.+++++|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            489999999999999999999999999999876 899975

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.79  E-value=1.5e-09  Score=101.84  Aligned_cols=39  Identities=28%  Similarity=0.541  Sum_probs=37.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+++|++|+++|++|+|+|+ +.+||.|.
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~-~~~GG~~~   40 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEK-EYLGGTCL   40 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEec-CCCCCcee
Confidence            6899999999999999999999999999999 88999986

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK13748 putative mercuric reductase; Provisional

Probab=98.77  E-value=1.7e-09  Score=104.02  Aligned_cols=41  Identities=39%  Similarity=0.587  Sum_probs=38.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|.+|++.|++|.|+|++ .+||.|.
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~  137 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCV  137 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeecc
Confidence            3589999999999999999999999999999997 8999986

>PTZ00058 glutathione reductase; Provisional

Probab=98.76  E-value=3.4e-09  Score=101.73  Aligned_cols=41  Identities=24%  Similarity=0.435  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||++|++||.++++.|.+|.|+|+. .+||.|-
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCl   87 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCV   87 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-ccccccc
Confidence            4579999999999999999999999999999986 7999875

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=98.76  E-value=2.1e-08  Score=91.37  Aligned_cols=62  Identities=34%  Similarity=0.668  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCC-CcEeeeceeEEcCcchHHHHHHHHH
Q 024958           40 LAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH-GNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        40 ~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~-g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +|||+||++|+++|++|+|||+++++||+++++.... |..+|.|++++...+.++...+.++
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l   63 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDEL   63 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCccceeecCCcccccccchhhHHHHHHh
Confidence            5899999999999999999999999999999987543 8999999999998888887777765

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.73  E-value=9.4e-09  Score=85.92  Aligned_cols=41  Identities=34%  Similarity=0.557  Sum_probs=38.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||||+|||+|||+|+++|++|+|||++..+||-.+
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            36999999999999999999999999999999999988754

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.70  E-value=1.9e-09  Score=102.82  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=36.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...+||+|||||++||+||..|++.|++|+|+|.  .+||++.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~  250 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK  250 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence            3458999999999999999999999999999974  5899875

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02976 amine oxidase

Probab=98.67  E-value=3.4e-08  Score=101.41  Aligned_cols=61  Identities=34%  Similarity=0.545  Sum_probs=55.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC   90 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~   90 (260)
                      .++|+|||||++|+++|+.|.++|++|+|||+++.+||++++.....+..+|.|++|+++.
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G~  753 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITGV  753 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEecc
Confidence            4789999999999999999999999999999999999999876544678899999999764

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.66  E-value=2.1e-08  Score=83.98  Aligned_cols=41  Identities=37%  Similarity=0.515  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||||++||+||+.|+++|++|.|||++..+||..+
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            47999999999999999999999999999999999998643

>PLN02507 glutathione reductase

Probab=98.65  E-value=2.4e-09  Score=101.69  Aligned_cols=42  Identities=29%  Similarity=0.345  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~---------~~~~GG~~~   70 (260)
                      -.+||+|||||++|+++|.++++.|++|.|+|+         .+.+||.|.
T Consensus        24 ~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~   74 (499)
T PLN02507         24 YDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCV   74 (499)
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceee
Confidence            357999999999999999999999999999996         367899985

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.55  E-value=3.9e-08  Score=93.11  Aligned_cols=40  Identities=30%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-----C---cccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-----S---FIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-----~---~~GG~~~   70 (260)
                      +||+|||+|++|+.+|+.+++.|++|.|+|+.     .   .+||.|-
T Consensus         3 yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~   50 (484)
T TIGR01438         3 YDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCV   50 (484)
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceecccccc
Confidence            69999999999999999999999999999974     1   5899875

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PLN02546 glutathione reductase

Probab=98.52  E-value=1.3e-08  Score=97.73  Aligned_cols=41  Identities=22%  Similarity=0.294  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc---------cCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES---------RSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~---------~~~~GG~~~   70 (260)
                      .+||+|||+|++|+.+|..++++|++|.|+|+         ...+||.|-
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~  128 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCV  128 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCccc
Confidence            37899999999999999999999999999997         256888875

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.52  E-value=1.8e-07  Score=87.71  Aligned_cols=55  Identities=33%  Similarity=0.419  Sum_probs=44.2

Q ss_pred             CCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCcccccceee
Q 024958           13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~~GG~~~~~   72 (260)
                      ....|+.++.+     ..++|+|||||+|||++|.+|. +.|++|+|||+.+.+||.+++-
T Consensus        27 ~~~~~~~~~~~-----~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         27 FTGKCFFTNEA-----KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCccccCCCCC-----CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            34445554443     4578999999999999999765 6799999999999999998753

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.47  E-value=1.6e-07  Score=86.59  Aligned_cols=43  Identities=37%  Similarity=0.407  Sum_probs=38.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..+||+|||||+||++||++|+++|++|+||||.+.+|-...+
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            3589999999999999999999999999999999888875443

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.47  E-value=2.5e-07  Score=93.63  Aligned_cols=43  Identities=42%  Similarity=0.613  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||+|||+||+.|+++|++|+|||+.+.+||..+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~  578 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKN  578 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeee
Confidence            4579999999999999999999999999999999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.46  E-value=2.1e-07  Score=80.86  Aligned_cols=39  Identities=33%  Similarity=0.504  Sum_probs=36.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||++|+.|+++|++|+|+||+..+||.
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg   59 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGG   59 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcc
Confidence            579999999999999999999999999999999998765

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.44  E-value=2.5e-07  Score=80.60  Aligned_cols=40  Identities=35%  Similarity=0.643  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||++||+||+.|+++|++|+|+|++..+||..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            5799999999999999999999999999999999988754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.40  E-value=4.8e-07  Score=83.56  Aligned_cols=38  Identities=29%  Similarity=0.516  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ...+||+|||||++|+++|..|+++|++|+|||+++..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            34589999999999999999999999999999998764

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.39  E-value=6e-07  Score=84.31  Aligned_cols=38  Identities=39%  Similarity=0.541  Sum_probs=34.3

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .....+||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            34556899999999999999999999999999999874

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.36  E-value=7e-07  Score=83.83  Aligned_cols=42  Identities=45%  Similarity=0.660  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||+|++||++|+.|++.|++|+|||+.+.+||.++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            458999999999999999999999999999999999999865

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.36  E-value=4.6e-07  Score=85.41  Aligned_cols=41  Identities=34%  Similarity=0.478  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||.+++++|++|+|+|+.+.+||.|.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            47999999999999999999999999999999888999974

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.36  E-value=5.1e-07  Score=91.23  Aligned_cols=43  Identities=42%  Similarity=0.637  Sum_probs=40.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+.+.+||.++.
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            4589999999999999999999999999999999999998763

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.35  E-value=7e-07  Score=87.61  Aligned_cols=43  Identities=40%  Similarity=0.569  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++||++|+.|++.|++|+|||+.+.+||.+++
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            4579999999999999999999999999999999999998763

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.34  E-value=6.7e-07  Score=81.51  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .||+|||||++|+++|++|+++|++|+|+|+.+..+
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~~~~   36 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPH   36 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            489999999999999999999999999999987653

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=98.33  E-value=5.7e-07  Score=80.31  Aligned_cols=35  Identities=43%  Similarity=0.590  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+|+|||||++||++|..|+++|++|+|||+.+.+
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence            58999999999999999999999999999998665

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02463 lycopene beta cyclase

Probab=98.32  E-value=1.1e-06  Score=82.29  Aligned_cols=60  Identities=18%  Similarity=0.290  Sum_probs=46.0

Q ss_pred             cccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958            5 LLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.-.+.+..+.+.-|.-.++.....||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~   62 (447)
T PLN02463          3 LELVPETKKENLDFELPRFDPSKSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPL   62 (447)
T ss_pred             cccCCCCccccccccccCCCCccccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCcc
Confidence            444444555555555555445566678999999999999999999999999999999753

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=98.32  E-value=7.1e-07  Score=83.26  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+||.+.+|
T Consensus         5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157          5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            5899999999999999999999999999999987665

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=98.32  E-value=6.8e-07  Score=78.08  Aligned_cols=38  Identities=42%  Similarity=0.560  Sum_probs=34.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||||++||++|+.|++.|++|+|+|+...++..
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~   38 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYK   38 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcc
Confidence            48999999999999999999999999999999877653

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.32  E-value=6.5e-07  Score=80.03  Aligned_cols=35  Identities=54%  Similarity=0.797  Sum_probs=32.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ||+|||||++|+++|+.|+++|++|+|+|++ .+|+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~-~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG-DIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence            7999999999999999999999999999999 5544

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.31  E-value=6e-07  Score=83.16  Aligned_cols=36  Identities=33%  Similarity=0.564  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +||+|||||+|||.||+.++++|++|+||||++.+|
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~g   36 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVG   36 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccc
Confidence            489999999999999999999999999999999985

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK07236 hypothetical protein; Provisional

Probab=98.31  E-value=7.9e-07  Score=81.58  Aligned_cols=37  Identities=27%  Similarity=0.466  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +...+|+|||||++||++|+.|++.|++|+||||.+.
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4568999999999999999999999999999999863

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.29  E-value=8.7e-07  Score=81.32  Aligned_cols=37  Identities=35%  Similarity=0.600  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..+|+|||||++||++|..|++.|++|+||||.+.++
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~   40 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG   40 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence            4799999999999999999999999999999987654

>PRK10015 oxidoreductase; Provisional

Probab=98.29  E-value=9e-07  Score=82.61  Aligned_cols=37  Identities=30%  Similarity=0.490  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .+||+|||||++|++||+.|+++|++|+|+||.+.+|
T Consensus         5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g   41 (429)
T PRK10015          5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAG   41 (429)
T ss_pred             ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCC
Confidence            4799999999999999999999999999999987653

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.29  E-value=8.2e-07  Score=83.49  Aligned_cols=41  Identities=32%  Similarity=0.511  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .+||+|||||++|++||..|+++|++|+|+|+.. +||.|..
T Consensus         4 ~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          4 EYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            4799999999999999999999999999999987 9999864

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=98.29  E-value=1.7e-06  Score=77.81  Aligned_cols=44  Identities=36%  Similarity=0.437  Sum_probs=39.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccceee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~~~~   72 (260)
                      .+++|+|||+|+||+.+|++|.++  +.+|+|+|+.+.++|..++-
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            345999999999999999999995  68999999999999988753

>PRK06753 hypothetical protein; Provisional

Probab=98.28  E-value=8.5e-07  Score=80.76  Aligned_cols=36  Identities=44%  Similarity=0.825  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ++|+|||||++||++|+.|+++|++|+|||+++.+.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            489999999999999999999999999999997653

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.28  E-value=1.2e-06  Score=85.85  Aligned_cols=42  Identities=45%  Similarity=0.717  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++||++|+.|++.|++|+|||+.+.+||.++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999875

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.28  E-value=1.2e-06  Score=82.16  Aligned_cols=42  Identities=40%  Similarity=0.616  Sum_probs=39.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .++|+|||||++||++|..|+++|++|+|||+.+.+||+..+
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            389999999999999999999999999999999999999764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.28  E-value=1.1e-06  Score=89.92  Aligned_cols=41  Identities=39%  Similarity=0.652  Sum_probs=38.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+.+.+||..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            57999999999999999999999999999999999999865

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.28  E-value=1.3e-06  Score=85.58  Aligned_cols=43  Identities=40%  Similarity=0.563  Sum_probs=40.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||+|++||++|+.|+++|++|+|||+.+.+||.+++
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~  351 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTF  351 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeec
Confidence            3689999999999999999999999999999999999998763

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.27  E-value=1.5e-06  Score=81.99  Aligned_cols=42  Identities=38%  Similarity=0.655  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++||++|..|+++|++|+|||+.+.+||.++
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999865

>PRK07121 hypothetical protein; Validated

Probab=98.26  E-value=2e-06  Score=81.57  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=38.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+|.+||+||++++++|.+|+|+||.+..||...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~~gG~s~   60 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAGAGGATA   60 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            358999999999999999999999999999999999888643

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.26  E-value=9.6e-07  Score=80.41  Aligned_cols=34  Identities=24%  Similarity=0.532  Sum_probs=32.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ||+|||||++||++|+.|+++|++|+||||.+.+
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCcc
Confidence            6999999999999999999999999999999764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=98.25  E-value=1e-06  Score=82.45  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=41.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   72 (260)
                      ...||+|||+|++|+.+|..|++.|++|+++|+++..||++++.
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~   46 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASL   46 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccc
Confidence            34899999999999999999999999999999999999999975

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.25  E-value=1.1e-06  Score=81.11  Aligned_cols=36  Identities=31%  Similarity=0.687  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .||+|||||+.|+++|++|+++|++|+|+||++.+|
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~~~~   37 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRYAA   37 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            499999999999999999999999999999998654

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.25  E-value=7.9e-07  Score=82.09  Aligned_cols=44  Identities=36%  Similarity=0.622  Sum_probs=40.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ...++|+|||||++||+||..|++.|++|.++||++.+||++..
T Consensus       122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak  165 (622)
T COG1148         122 EVSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAK  165 (622)
T ss_pred             hhccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHh
Confidence            44578999999999999999999999999999999999999764

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.24  E-value=1.1e-06  Score=82.25  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||.+++++|++|+|+|+ +.+||.|.
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~   41 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCV   41 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceee
Confidence            37999999999999999999999999999998 57999976

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.24  E-value=1.1e-06  Score=80.49  Aligned_cols=37  Identities=32%  Similarity=0.417  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+.+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            3479999999999999999999999999999998765

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.24  E-value=1.7e-06  Score=81.40  Aligned_cols=42  Identities=43%  Similarity=0.653  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++||++|..|+++|++|+|+|+.+.+||.+.
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            457999999999999999999999999999999999999765

>PRK09126 hypothetical protein; Provisional

Probab=98.24  E-value=1.3e-06  Score=80.06  Aligned_cols=36  Identities=31%  Similarity=0.496  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+|+|||||++|+++|..|+++|++|+|+||.+.
T Consensus         2 ~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126          2 MHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            357999999999999999999999999999999865

>PRK06116 glutathione reductase; Validated

Probab=98.23  E-value=1.1e-06  Score=82.25  Aligned_cols=40  Identities=25%  Similarity=0.464  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|..|+++|++|+|+|+. .+||.|.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            479999999999999999999999999999985 7999875

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.23  E-value=6.1e-06  Score=76.17  Aligned_cols=50  Identities=30%  Similarity=0.381  Sum_probs=39.3

Q ss_pred             CCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccCcccc
Q 024958           18 LFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSFIGG   67 (260)
Q Consensus        18 ~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~-G~-~v~v~E~~~~~GG   67 (260)
                      |.|.+-........||+|||||+.|+++|++|+++ |. +|+|+|+....+|
T Consensus        18 ~~~~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~g   69 (407)
T TIGR01373        18 WKPAWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGG   69 (407)
T ss_pred             CCcccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCc
Confidence            45555444445568999999999999999999995 95 9999999864444

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.22  E-value=1.6e-06  Score=81.92  Aligned_cols=41  Identities=39%  Similarity=0.456  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|.++++.|++|+|+|+.+.+||.|.
T Consensus         4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            48999999999999999999999999999999888999875

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.22  E-value=1.6e-06  Score=79.63  Aligned_cols=34  Identities=32%  Similarity=0.638  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4699999999999999999999999999999874

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.21  E-value=1.5e-06  Score=81.01  Aligned_cols=39  Identities=31%  Similarity=0.588  Sum_probs=33.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ||+|||||++|++||+.+++.|.+|+|+|+.+.+||...
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            799999999999999999999999999999999999865

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.21  E-value=1.7e-06  Score=78.96  Aligned_cols=40  Identities=38%  Similarity=0.625  Sum_probs=36.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..++|+|||||++|+++|++|+++|.+|+++|+....+|.
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~~~g~   42 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGGGA   42 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCccCCcc
Confidence            4689999999999999999999999999999998876543

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.20  E-value=2.5e-06  Score=80.48  Aligned_cols=42  Identities=36%  Similarity=0.538  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||+|++||++|..|+++|++|+|||+.+.+||.++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            457999999999999999999999999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.20  E-value=1.6e-06  Score=81.78  Aligned_cols=40  Identities=25%  Similarity=0.397  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|.+|++.|++|+|+|+. .+||.|.
T Consensus         4 ~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   43 (472)
T PRK05976          4 EYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCL   43 (472)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceE
Confidence            479999999999999999999999999999985 7899986

>PRK08013 oxidoreductase; Provisional

Probab=98.20  E-value=1.7e-06  Score=79.81  Aligned_cols=36  Identities=31%  Similarity=0.513  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          2 QSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            347999999999999999999999999999999875

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.19  E-value=2e-06  Score=78.29  Aligned_cols=38  Identities=21%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ...||+|||||+.|+++|+.|+++|++|+|+|+....+
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~~~~   39 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPH   39 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEecccCCC
Confidence            35799999999999999999999999999999987553

>PRK07538 hypothetical protein; Provisional

Probab=98.19  E-value=1.8e-06  Score=79.98  Aligned_cols=35  Identities=34%  Similarity=0.636  Sum_probs=32.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +||+|||||++||++|+.|+++|++|+|||+.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            58999999999999999999999999999998754

>PRK06847 hypothetical protein; Provisional

Probab=98.18  E-value=2e-06  Score=78.36  Aligned_cols=35  Identities=37%  Similarity=0.543  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||||++||++|+.|++.|++|+|||+++.
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            36899999999999999999999999999999875

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=98.18  E-value=2e-06  Score=79.05  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+|+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus         5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773          5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            457999999999999999999999999999999864

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.17  E-value=5.3e-07  Score=80.16  Aligned_cols=43  Identities=23%  Similarity=0.380  Sum_probs=39.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..+|-.|||||-+|+++|++.++.|.++.++|..-.+||.|--
T Consensus        19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            3689999999999999999999999999999998899999863

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.17  E-value=2.2e-06  Score=79.16  Aligned_cols=35  Identities=34%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +||+|||||++|+++|+.|+++|++|+|+|+...+
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~   35 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDN   35 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            48999999999999999999999999999998654

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.17  E-value=1.9e-06  Score=78.92  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC---CCcEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~   62 (260)
                      |+..+|+|||||++|+++|+.|+++   |++|+|||+.
T Consensus         1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4568999999999999999999998   9999999995

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.17  E-value=2.1e-06  Score=78.64  Aligned_cols=37  Identities=38%  Similarity=0.614  Sum_probs=34.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ||+|||||++|+++|+.|++.|++|+|+|+++.+|+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            6999999999999999999999999999999877764

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.16  E-value=2.3e-06  Score=79.24  Aligned_cols=38  Identities=37%  Similarity=0.655  Sum_probs=34.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ||+|||+|.+||+||+.++++|.+|+|+||.+..||..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~~gg~~   38 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPRLGGSS   38 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSGGGSGG
T ss_pred             CEEEECCCHHHHHHHHHHhhhcCeEEEEEeeccccccc
Confidence            79999999999999999999999999999999999954

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.16  E-value=2.2e-06  Score=78.92  Aligned_cols=35  Identities=40%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|+|||||++|+++|+.|+++|++|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            36899999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.16  E-value=2.6e-06  Score=80.30  Aligned_cols=40  Identities=25%  Similarity=0.480  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||.+|++.|++|+|+|++ .+||.|.
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~   43 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL   43 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            479999999999999999999999999999984 7899875

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=98.15  E-value=7.3e-08  Score=87.27  Aligned_cols=66  Identities=8%  Similarity=-0.069  Sum_probs=36.3

Q ss_pred             hHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhh
Q 024958          163 DEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE  229 (260)
Q Consensus       163 ~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~  229 (260)
                      ..++-++...|.+|+........+.++|+ ++|....+-...+++|+|||+|.||++|+..|.+...
T Consensus       149 r~vVla~G~~P~iP~~~~~~~~~~~v~Hs-s~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~  214 (341)
T PF13434_consen  149 RNVVLATGGQPRIPEWFQDLPGSPRVFHS-SEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGP  214 (341)
T ss_dssp             SEEEE----EE---GGGGGGTT-TTEEEG-GGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred             CeEEECcCCCCCCCcchhhcCCCCCEEEe-hHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence            34555666788888533221124678998 6665443334568999999999999999999998754

>PRK06184 hypothetical protein; Provisional

Probab=98.15  E-value=2.6e-06  Score=81.01  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ...+|+|||||++||++|..|+++|++|+|+||.+.+
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            4579999999999999999999999999999998665

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.15  E-value=2.1e-06  Score=78.40  Aligned_cols=34  Identities=35%  Similarity=0.536  Sum_probs=31.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~   65 (260)
                      ||+|||||++|+++|+.|+++| ++|+|+|+.+.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCcc
Confidence            6999999999999999999999 999999998643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.15  E-value=2.4e-06  Score=78.62  Aligned_cols=38  Identities=32%  Similarity=0.548  Sum_probs=34.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||||++|+++|+.|+++  |++|+|+||...+|+.
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~   42 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPARH   42 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCccccc
Confidence            6999999999999999999999  9999999999876553

>PRK07588 hypothetical protein; Provisional

Probab=98.15  E-value=2.4e-06  Score=78.38  Aligned_cols=35  Identities=43%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ++|+|||||++||++|+.|+++|++|+|||+.+..
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            48999999999999999999999999999998654

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=98.15  E-value=2.5e-06  Score=78.04  Aligned_cols=36  Identities=33%  Similarity=0.546  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|+.|++.|++|+|+|+.+.+
T Consensus         5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608          5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            468999999999999999999999999999998775

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.14  E-value=2.7e-06  Score=77.12  Aligned_cols=39  Identities=28%  Similarity=0.494  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..++|+|||||++||-||..++++|++|+|||+.+.+|-
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~Gr   40 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGR   40 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccc
Confidence            468999999999999999999999999999999999873

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.14  E-value=2.8e-06  Score=78.39  Aligned_cols=35  Identities=40%  Similarity=0.519  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+|+|||||++||++|..|+++|++|+|+|+.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            78999999999999999999999999999998764

>PLN02697 lycopene epsilon cyclase

Probab=98.14  E-value=5e-06  Score=79.41  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ......||+|||||++||++|+.|++.|++|+|+|+....
T Consensus       104 ~~~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~  143 (529)
T PLN02697        104 IGDGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF  143 (529)
T ss_pred             cccCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC
Confidence            3455689999999999999999999999999999986443

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.14  E-value=4.2e-06  Score=80.75  Aligned_cols=43  Identities=40%  Similarity=0.635  Sum_probs=39.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+.++|+|||||++||++|+.|++.|++|+|+|+.+.+||.++
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            3567999999999999999999999999999999999999775

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.13  E-value=4e-06  Score=79.90  Aligned_cols=41  Identities=41%  Similarity=0.587  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ...||+|||+|.+|++||+.++++|.+|+|+||.+.+||..
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            35799999999999999999999999999999999998863

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.13  E-value=4.2e-06  Score=82.29  Aligned_cols=37  Identities=35%  Similarity=0.567  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..+|+|||||++|+++|+.|+++|++|+|+|+...+|
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~~~~  296 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALARRGWQVTLYEADEAPA  296 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            3699999999999999999999999999999986554

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.13  E-value=2.7e-06  Score=78.74  Aligned_cols=36  Identities=39%  Similarity=0.723  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~G   66 (260)
                      ++|+|||||++||++|+.|+++| ++|+||||.+.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            47999999999999999999998 5999999987764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.13  E-value=2.9e-06  Score=77.70  Aligned_cols=36  Identities=28%  Similarity=0.488  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            468999999999999999999999999999998654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.13  E-value=3.1e-06  Score=76.90  Aligned_cols=35  Identities=29%  Similarity=0.460  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .||+|||||++|+++|++|+++|++|+|+|+....
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~~~   35 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRA   35 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            48999999999999999999999999999998653

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.12  E-value=2.5e-06  Score=78.69  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+|+|||||++|+++|+.|+++|++|+|||+.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            689999999999999999999999999999986

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.12  E-value=4.7e-06  Score=78.42  Aligned_cols=36  Identities=28%  Similarity=0.463  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~   64 (260)
                      ...||+|||||++|+++|++|+++  |.+|+|+|++..
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~   60 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC   60 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence            347999999999999999999998  899999999754

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.12  E-value=2.8e-06  Score=78.08  Aligned_cols=32  Identities=34%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            48999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=98.11  E-value=4.3e-06  Score=76.87  Aligned_cols=57  Identities=39%  Similarity=0.735  Sum_probs=49.9

Q ss_pred             HHHHHHHHCCCcEEEEcccCcccccceeeecCCCc--EeeeceeEEcCcchHHHHHHHHH
Q 024958           44 STAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGN--HIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        44 ~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~--~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +||+.|+++|++|+|||+++++||++.++. .+|.  .+|.|+|++.+.++++.++++++
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~~~~~l~~~l   59 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYTNLLALLRRI   59 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccHHHHHHHHHh
Confidence            489999999999999999999999999886 4543  49999999998889888887775

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.10  E-value=3.9e-06  Score=85.87  Aligned_cols=42  Identities=29%  Similarity=0.450  Sum_probs=39.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .+||+|||||++||+||..+++.|++|+|+|+++.+||.++.
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            479999999999999999999999999999999999998863

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.10  E-value=3.4e-06  Score=78.71  Aligned_cols=38  Identities=34%  Similarity=0.632  Sum_probs=35.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKV   69 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~   69 (260)
                      ||+|||+|.+|++||+.++++| .+|+|+||.+..||..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            6999999999999999999999 9999999999988864

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK05868 hypothetical protein; Validated

Probab=98.09  E-value=3.9e-06  Score=76.85  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ++|+|||||++||++|+.|+++|++|+|||+.+.+
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            58999999999999999999999999999998765

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.09  E-value=3.7e-06  Score=77.64  Aligned_cols=37  Identities=27%  Similarity=0.512  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ++|+|||||++|+++|++|+++|++|+|+|+...+|.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~~~~   37 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPGPAL   37 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCchhh
Confidence            4899999999999999999999999999999865543

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.08  E-value=4e-06  Score=77.16  Aligned_cols=35  Identities=40%  Similarity=0.438  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            46899999999999999999999999999999874

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.08  E-value=4e-06  Score=77.08  Aligned_cols=33  Identities=42%  Similarity=0.645  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..+|+|||||++||++|..|++.|++|+|+|+.
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            478999999999999999999999999999998

>PLN02661 Putative thiazole synthesis

Probab=98.08  E-value=4e-06  Score=75.77  Aligned_cols=39  Identities=41%  Similarity=0.519  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++ |++|+|+|++..+||.
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG  131 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGG  131 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccc
Confidence            46999999999999999999986 8999999999998774

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.08  E-value=4.7e-06  Score=79.47  Aligned_cols=40  Identities=20%  Similarity=0.371  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||+.|+++|+.|+++|++|+|+||++..+|..
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS   45 (508)
T PRK12266          6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATS   45 (508)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcc
Confidence            4899999999999999999999999999999987766654

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=98.06  E-value=7.4e-06  Score=77.67  Aligned_cols=42  Identities=36%  Similarity=0.578  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++|+++|..|+++|++|+|||+.+.+||..+
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            347999999999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.05  E-value=5.6e-07  Score=82.38  Aligned_cols=34  Identities=21%  Similarity=0.265  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      ++|+|||||++|+++|..|++.+  .+|+|+++++.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            58999999999999999998864  58999998764

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.05  E-value=4.7e-06  Score=76.93  Aligned_cols=33  Identities=30%  Similarity=0.592  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..+|+|||||++||++|..|+++|++|+|+|+.
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            479999999999999999999999999999996

>PRK08244 hypothetical protein; Provisional

Probab=98.05  E-value=5.3e-06  Score=78.65  Aligned_cols=36  Identities=33%  Similarity=0.359  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            368999999999999999999999999999998654

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.04  E-value=5.9e-06  Score=78.64  Aligned_cols=39  Identities=23%  Similarity=0.427  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||+.|+++|+.|+++|++|+|+||++..+|.
T Consensus         6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d~~~Gt   44 (502)
T PRK13369          6 TYDLFVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQGT   44 (502)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCC
Confidence            479999999999999999999999999999999766554

>PRK06185 hypothetical protein; Provisional

Probab=98.04  E-value=5.6e-06  Score=76.33  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=33.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            347999999999999999999999999999999754

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.04  E-value=6.2e-06  Score=77.63  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc--cccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~--~GG~   68 (260)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+.  .||.
T Consensus         4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~   44 (466)
T PRK08274          4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGN   44 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence            47999999999999999999999999999999974  6765

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.03  E-value=5.1e-06  Score=76.01  Aligned_cols=33  Identities=39%  Similarity=0.694  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .||+|||||++|+++|+.|++.|++|+|+|+.+
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            589999999999999999999999999999863

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.03  E-value=2.8e-07  Score=92.52  Aligned_cols=38  Identities=29%  Similarity=0.586  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~G   66 (260)
                      ++++|+|||+|++|+.+|..|+++    +++|+||++.+.++
T Consensus         2 ~~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          2 SKVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            356999999999999999999864    47999999998764

>PRK06126 hypothetical protein; Provisional

Probab=98.03  E-value=6.4e-06  Score=79.08  Aligned_cols=35  Identities=26%  Similarity=0.407  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|+|||||++||++|+.|+++|++|+|||+.+.
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            47999999999999999999999999999999864

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.03  E-value=8.9e-06  Score=73.85  Aligned_cols=42  Identities=43%  Similarity=0.482  Sum_probs=39.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||+|++|+.+|..|++.|++|+++|+.+.+||.+.
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            347999999999999999999999999999999999999765

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.02  E-value=9.6e-06  Score=77.95  Aligned_cols=37  Identities=27%  Similarity=0.530  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ...+|+|||||++||++|+.|++.|++|+|+||.+.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4579999999999999999999999999999999765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.02  E-value=5.6e-06  Score=75.90  Aligned_cols=34  Identities=29%  Similarity=0.575  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            4799999999999999999999999999999975

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.01  E-value=6.3e-06  Score=80.46  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+..+|+|||||++||++|..|+++|++|+||||.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            456899999999999999999999999999999975

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=9.3e-07  Score=78.67  Aligned_cols=44  Identities=14%  Similarity=0.017  Sum_probs=36.4

Q ss_pred             ccccccchhHHHHhHHHHHHHHHHhhhhHHH--HHHHHHHHHHHhh
Q 024958          203 KQDYIDSMEGPTLSDRQASAYICNAGEELVA--LRKQLAAFESQEQ  246 (260)
Q Consensus       203 ~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~--~~~~~~~~~~~~~  246 (260)
                      ++||+|.|+|.||||+++|.+|+..++||++  |-.+.|+-.+-|.
T Consensus       352 F~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~  397 (520)
T COG3634         352 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQD  397 (520)
T ss_pred             cCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHH
Confidence            5599999999999999999999999999987  4566666555443

>PRK06834 hypothetical protein; Provisional

Probab=98.01  E-value=7.3e-06  Score=77.78  Aligned_cols=36  Identities=36%  Similarity=0.412  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+|+|||||++||++|+.|+++|++|+|+|+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            457999999999999999999999999999999864

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.01  E-value=7.1e-06  Score=77.52  Aligned_cols=41  Identities=29%  Similarity=0.502  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc------cCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES------RSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~------~~~~GG~~~   70 (260)
                      .+||+|||||++|++||.++++.|.+|+|+|+      ...+||.|.
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~   50 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCL   50 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccc
Confidence            47999999999999999999999999999998      467888875

>PLN02487 zeta-carotene desaturase

Probab=98.00  E-value=1.4e-05  Score=76.94  Aligned_cols=106  Identities=74%  Similarity=1.210  Sum_probs=83.6

Q ss_pred             chhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH-----------------------hhhccCCCCCCCCCCCCCCC
Q 024958          135 PEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR-----------------------QSLYRGGPGKVPLRTDQKTP  191 (260)
Q Consensus       135 ~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~-----------------------~p~~p~~pG~~~F~G~~~hs  191 (260)
                      +.+|+..+.++.+..++...+.+....++++++.+..                       ++.+...||++.+++.+.++
T Consensus       437 ~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~~p~~~~~~v~~~~vv~~~~at~~~~pg~~~~RP~~~T~  516 (569)
T PLN02487        437 PEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLELFPSSRGLEVTWSSVVKIGQSLYREAPGMDPFRPDQKTP  516 (569)
T ss_pred             HHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHhCcccccCceEEEEEEEccCceeccCCCccccCCCCCCC
Confidence            4444332333444455555556666777777777654                       55566779999898889999


Q ss_pred             CccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHHHHHHHH
Q 024958          192 VKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVALRKQLAA  240 (260)
Q Consensus       192 ~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~~~~~~~  240 (260)
                      +.+++.+++|..++|+..++|+..||.++|..|.+.+..+..+|++.+.
T Consensus       517 ~~nl~LAGD~t~~~yPat~EgAv~SG~~AA~~i~~~~~~~~~~~~~~~~  565 (569)
T PLN02487        517 ISNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICEAGEELAGLRKKLAA  565 (569)
T ss_pred             CCCEEEeCcccccCCcchHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            9999999999999999999999999999999999999999999988764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.00  E-value=1.1e-05  Score=77.54  Aligned_cols=39  Identities=28%  Similarity=0.302  Sum_probs=35.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +...+|+|||||++||++|..|+++|++|+||||.+.++
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~   46 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY   46 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence            345899999999999999999999999999999997654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.00  E-value=8e-06  Score=78.56  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||+.|+++|+.|+++|++|+|+|+++..+|.
T Consensus         6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~d~~~Ga   44 (546)
T PRK11101          6 ETDVIIIGGGATGAGIARDCALRGLRCILVERHDIATGA   44 (546)
T ss_pred             cccEEEECcCHHHHHHHHHHHHcCCeEEEEECCCCCCCc
Confidence            479999999999999999999999999999997655443

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.99  E-value=8.9e-06  Score=77.65  Aligned_cols=39  Identities=26%  Similarity=0.487  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+| +||+||++++++|.+|+|+||.+..||..
T Consensus         7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837          7 EVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             ccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            5799999999 99999999999999999999999888864

>PLN02985 squalene monooxygenase

Probab=97.98  E-value=9.2e-06  Score=77.57  Aligned_cols=36  Identities=31%  Similarity=0.466  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ....||+|||||++|+++|+.|+++|++|+|+||..
T Consensus        41 ~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         41 DGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            345799999999999999999999999999999974

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.98  E-value=7.2e-06  Score=75.38  Aligned_cols=34  Identities=26%  Similarity=0.412  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      .||+|||||++||++|..|+++|  ++|+|+|+++.
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            68999999999999999999996  99999999864

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.97  E-value=8.5e-06  Score=81.58  Aligned_cols=43  Identities=40%  Similarity=0.615  Sum_probs=40.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||.|++||+||-.|-+.||.|+||||.+++||...+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            3589999999999999999999999999999999999999875

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.97  E-value=8.9e-06  Score=78.69  Aligned_cols=41  Identities=29%  Similarity=0.533  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+..||...
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            57999999999999999999999999999999999998754

>PRK07190 hypothetical protein; Provisional

Probab=97.97  E-value=9.6e-06  Score=76.94  Aligned_cols=36  Identities=28%  Similarity=0.159  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|+.|+++|++|+|+||.+.+
T Consensus         5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~   40 (487)
T PRK07190          5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGP   40 (487)
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence            479999999999999999999999999999998765

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.97  E-value=8.5e-06  Score=77.54  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC--------cccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~--------~~GG~~~   70 (260)
                      .+||+|||||++|++||..++++|++|+|+|+..        .+||.|-
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~   53 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCV   53 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceec
Confidence            3799999999999999999999999999999732        4899874

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.97  E-value=8.8e-06  Score=74.56  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=34.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~   68 (260)
                      ||+|||||++||++|++|++.  |++|+|+|+.+.+||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            699999999999999999987  9999999999888873

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.93  E-value=9.6e-06  Score=75.80  Aligned_cols=33  Identities=24%  Similarity=0.440  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~----~G~~v~v~E~~~   63 (260)
                      .||+|||||++|+++|+.|++    +|++|+|+|+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            489999999999999999999    899999999943

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK13984 putative oxidoreductase; Provisional

Probab=97.92  E-value=1.6e-05  Score=77.31  Aligned_cols=43  Identities=47%  Similarity=0.568  Sum_probs=39.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...++|+|||+|++|+++|..|+++|++|+|||+.+.+||.++
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            3457899999999999999999999999999999999999765

>TIGR00275 flavoprotein, HI0933 family

Probab=97.92  E-value=6.6e-06  Score=76.11  Aligned_cols=37  Identities=35%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             EEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           34 AIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        34 ~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +|||||++||+||+.|+++|++|+|+||++.+|+.+.
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~   37 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLL   37 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCcccccccc
Confidence            5999999999999999999999999999999987653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.92  E-value=1.2e-05  Score=77.27  Aligned_cols=40  Identities=38%  Similarity=0.679  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC--cccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--FIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~--~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||.+  .+||..
T Consensus         4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s   45 (549)
T PRK12834          4 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQA   45 (549)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCce
Confidence            4799999999999999999999999999999999  788864

>PRK11445 putative oxidoreductase; Provisional

Probab=97.92  E-value=1.2e-05  Score=73.08  Aligned_cols=33  Identities=33%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .||+|||||++|+++|+.|++. ++|+|+|+.+.
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~   34 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQ   34 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCc
Confidence            6899999999999999999999 99999999874

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.91  E-value=1.3e-05  Score=75.42  Aligned_cols=39  Identities=28%  Similarity=0.493  Sum_probs=35.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ++|+|||+|++|+++|.++++.|++|+|+|+. .+||.|-
T Consensus         1 ~~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~~GG~c~   39 (458)
T PRK06912          1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-DLGGTCL   39 (458)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC-cccccCC
Confidence            38999999999999999999999999999986 5788875

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.91  E-value=1.3e-05  Score=72.96  Aligned_cols=36  Identities=39%  Similarity=0.594  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|..|.++|++|+|||+...+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            368999999999999999999999999999997665

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.89  E-value=1.6e-05  Score=65.59  Aligned_cols=36  Identities=42%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ||+|||||++|+++|..|++.|++++|+|+.+..+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~   36 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPY   36 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence            699999999999999999999999999998775443

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.89  E-value=2e-05  Score=76.41  Aligned_cols=40  Identities=25%  Similarity=0.521  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+..||..
T Consensus        11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835         11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            5799999999999999999999999999999999988853

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.89  E-value=1.3e-05  Score=75.99  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      .||+|||||++|+++|+.|++.  |.+|+||||.+.+|
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a   38 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA   38 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence            4899999999999999999997  99999999987554

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=97.89  E-value=1.6e-05  Score=73.63  Aligned_cols=35  Identities=43%  Similarity=0.647  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ++|+|||||++|+.+|+.|+++|++|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence            68999999999999999999999999999976544

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.89  E-value=1.6e-05  Score=77.15  Aligned_cols=40  Identities=28%  Similarity=0.503  Sum_probs=36.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .+.||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus         2 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~   41 (589)
T PRK08641          2 AKGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSH   41 (589)
T ss_pred             CCccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            3469999999999999999999999999999999877654

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=97.88  E-value=9e-06  Score=74.65  Aligned_cols=60  Identities=25%  Similarity=0.378  Sum_probs=52.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEE
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF   87 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~   87 (260)
                      .+..|++|||+|..||++|..|++.|.+|.++|++.++||...+....+|+.++.++.++
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGaavteeivpGfKfsr~syL~   71 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGAAVTEEIVPGFKFSRASYLL   71 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHhcCcceEEEEEeeecCcceeeehhccccccchHHHHH
Confidence            677999999999999999999999999999999998899887776667888887766544

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.88  E-value=1.7e-05  Score=77.58  Aligned_cols=40  Identities=28%  Similarity=0.531  Sum_probs=36.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||+.|.++|+.|+++|++|+|+|+++..+|..
T Consensus        71 ~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d~a~GtS  110 (627)
T PLN02464         71 PLDVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTS  110 (627)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEeccccCCCcc
Confidence            4899999999999999999999999999999997666653

>PTZ00367 squalene epoxidase; Provisional

Probab=97.88  E-value=7.6e-06  Score=78.90  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+..
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            4799999999999999999999999999999975

>PRK12839 hypothetical protein; Provisional

Probab=97.88  E-value=2e-05  Score=76.26  Aligned_cols=42  Identities=31%  Similarity=0.464  Sum_probs=38.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+|.+|+++|+.++++|.+|+|+||...+||...
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            357999999999999999999999999999999999999864

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=97.87  E-value=2.9e-05  Score=76.07  Aligned_cols=42  Identities=31%  Similarity=0.604  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-Cccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~   71 (260)
                      .+||+|||+|++|.++|.++++.|++|.|+|+. +.+||.|-.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            469999999999999999999999999999974 479999763

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=97.87  E-value=1.2e-06  Score=87.72  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=44.1

Q ss_pred             ChhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccc------cccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          161 PNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSY------TKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       161 ~~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y------~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ..+.++-+....|..|++||.+. .+ + +   .|+...+.      ...++.++|+|.|.+|.++|.+|.+.+.+|++
T Consensus        96 ~yD~LVlATGs~p~~p~ipG~~~-~~-v-~---~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv  168 (785)
T TIGR02374        96 SYDKLILATGSYPFILPIPGADK-KG-V-Y---VFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSV  168 (785)
T ss_pred             eCCEEEECCCCCcCCCCCCCCCC-CC-E-E---EeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence            44555666666788888999763 22 1 1   12222211      12467889999999999999999988766554

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.87  E-value=1.8e-05  Score=76.36  Aligned_cols=40  Identities=33%  Similarity=0.527  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+|+++|+.++++|.+|+|+||.+..||..
T Consensus         6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~   45 (557)
T PRK12844          6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGST   45 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcee
Confidence            5799999999999999999999999999999999888874

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.86  E-value=2.3e-05  Score=75.68  Aligned_cols=41  Identities=29%  Similarity=0.601  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+| +|++||...++.|.+|+|+||.+.+||...
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~~~GG~~~   55 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGGSTA   55 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCCCCcCccc
Confidence            36899999999 899999999999999999999999999765

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=97.85  E-value=2.1e-05  Score=73.76  Aligned_cols=43  Identities=30%  Similarity=0.460  Sum_probs=39.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..+|++|||+|++|..+|.++++.|.+|.|+|+...+||.|-.
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln   45 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN   45 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence            3589999999999999999999999999999999899999863

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=97.84  E-value=3.4e-05  Score=74.78  Aligned_cols=42  Identities=36%  Similarity=0.560  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+|.+|+++|+.++++|++|+|+||.+.+||...
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~~~gg~~~   56 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGGTTA   56 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCccc
Confidence            357999999999999999999999999999999999999865

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.84  E-value=3.1e-05  Score=74.47  Aligned_cols=40  Identities=23%  Similarity=0.440  Sum_probs=36.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~   54 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGS   54 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCc
Confidence            3579999999999999999999999999999999987764

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.83  E-value=2.1e-05  Score=74.56  Aligned_cols=41  Identities=20%  Similarity=0.410  Sum_probs=37.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEccc--------Ccccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESR--------SFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~--------~~~GG~~~   70 (260)
                      .+||+|||+|++|..+|.++++. |.+|.|+|+.        +.+||.|-
T Consensus         3 ~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCl   52 (486)
T TIGR01423         3 AFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCV   52 (486)
T ss_pred             ccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeec
Confidence            47999999999999999999997 9999999984        57999876

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=97.82  E-value=3.1e-05  Score=80.59  Aligned_cols=43  Identities=33%  Similarity=0.538  Sum_probs=39.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ....||+|||+|.+|++||+..++.|.+|+|+||.+..||...
T Consensus       407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            4458999999999999999999999999999999999998743

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.82  E-value=3.6e-05  Score=75.37  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|+.|++. |++|+|+|+.+..
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            57999999999999999999994 9999999998643

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.82  E-value=2.4e-05  Score=75.48  Aligned_cols=41  Identities=27%  Similarity=0.501  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||+|.+|+++|+.++++|++|+|+||.+.+||...
T Consensus         7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            57999999999999999999999999999999999888643

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=97.82  E-value=2.3e-05  Score=72.91  Aligned_cols=35  Identities=40%  Similarity=0.490  Sum_probs=32.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +|+|||||++|+.+|+.|+++|++|+|||+.+..+
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~   36 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKL   36 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc
Confidence            79999999999999999999999999999876643

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.81  E-value=2.2e-05  Score=74.61  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG   67 (260)
                      ...||+|||||+.|+++|+.|++.  |.+|+|+||.+.+|+
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a~   44 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVAL   44 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchhh
Confidence            347999999999999999999985  789999999877653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.81  E-value=3.5e-05  Score=75.52  Aligned_cols=37  Identities=32%  Similarity=0.493  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||+|.|||+||+.+++.|.+|+|+||...+|
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~   71 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPR   71 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4699999999999999999999999999999987765

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.80  E-value=2.1e-05  Score=72.15  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=31.6

Q ss_pred             cEEEECCCHHHHHHHHHH--HHCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L--~~~G~~v~v~E~~~~~   65 (260)
                      ||+|||||+|||++|++|  ++.|++|+|+|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            799999999999999999  7789999999998776

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.80  E-value=2.4e-05  Score=75.58  Aligned_cols=37  Identities=32%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ||+|||+|.+||+||+.++++|.+|+|+||....||.
T Consensus         1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~~~~g~   37 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVYPTRSH   37 (566)
T ss_pred             CEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            6999999999999999999999999999999876654

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=97.80  E-value=3.8e-05  Score=74.46  Aligned_cols=42  Identities=33%  Similarity=0.480  Sum_probs=38.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+|.+|+++|+.++++|++|+|+||++.+||...
T Consensus        11 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   52 (581)
T PRK06134         11 LECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDPVFGGTTA   52 (581)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            458999999999999999999999999999999998898754

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.80  E-value=4.4e-05  Score=54.14  Aligned_cols=35  Identities=31%  Similarity=0.532  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +|+|||||..|+-.|..|++.|.+|+++++.+.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            68999999999999999999999999999998875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.78  E-value=2.9e-05  Score=75.01  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-Ccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~~~GG   67 (260)
                      ...||+|||||+||+.||+.+++.|++|.++|++ +.+|+
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~   42 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQ   42 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccc
Confidence            3589999999999999999999999999999998 35654

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.77  E-value=2.9e-05  Score=75.93  Aligned_cols=39  Identities=31%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.|||+||+.+++.|.+|+|+||....||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            479999999999999999999999999999999876553

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.77  E-value=3.2e-05  Score=75.44  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus        29 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~   67 (617)
T PTZ00139         29 TYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSH   67 (617)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCC
Confidence            579999999999999999999999999999999887764

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.77  E-value=2.7e-05  Score=77.84  Aligned_cols=34  Identities=29%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~   64 (260)
                      ++|+|||||++||++|+.|++.  |++|+|+|+++.
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            4899999999999999999998  899999999876

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.76  E-value=3.2e-05  Score=72.91  Aligned_cols=39  Identities=28%  Similarity=0.523  Sum_probs=36.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ++|+|||+|++|+.+|..++++|++|+++|+.. +||.|.
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~-~gG~c~   40 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDG-LGGAAV   40 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC-CCCccc
Confidence            589999999999999999999999999999874 899886

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.75  E-value=5.1e-05  Score=74.26  Aligned_cols=39  Identities=21%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus        50 ~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~~~~g~   88 (635)
T PLN00128         50 TYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSH   88 (635)
T ss_pred             ecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCCCCCCc
Confidence            468999999999999999999999999999999877764

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.74  E-value=4.2e-05  Score=72.71  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-C-CcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ-G-HEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~-G-~~v~v~E~~~~~G   66 (260)
                      ...||+|||||+.|+++|+.|++. + .+|+|+||.+.+|
T Consensus        44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a   83 (497)
T PTZ00383         44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA   83 (497)
T ss_pred             CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence            358999999999999999999996 3 6999999987554

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.73  E-value=3.8e-05  Score=74.25  Aligned_cols=39  Identities=26%  Similarity=0.418  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....||.
T Consensus         5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~   43 (566)
T PRK06452          5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSH   43 (566)
T ss_pred             cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCc
Confidence            469999999999999999999999999999999776664

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.73  E-value=3.9e-05  Score=74.49  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....+|..
T Consensus        12 ~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~~~~g~t   51 (591)
T PRK07057         12 KFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHT   51 (591)
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCCc
Confidence            4799999999999999999999999999999987766643

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.73  E-value=3.9e-05  Score=72.41  Aligned_cols=34  Identities=38%  Similarity=0.672  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +||+|||+|.+||+||+.++++|.+|+|+||.+.
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            6899999999999999999999999999999864

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=97.73  E-value=3.3e-05  Score=70.50  Aligned_cols=42  Identities=36%  Similarity=0.516  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..||+|||||++||+||++|.+.      -++|.|+||...+||..-+
T Consensus        76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence            47999999999999999999874      3589999999999997543

>TIGR02462 pyranose_ox pyranose oxidase

Probab=97.72  E-value=4e-05  Score=73.38  Aligned_cols=39  Identities=26%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      +||+|||+|++|+++|+.|+++|++|+++|+....||.|
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            489999999999999999999999999999999998765

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.70  E-value=4.2e-05  Score=74.06  Aligned_cols=40  Identities=28%  Similarity=0.391  Sum_probs=34.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~   68 (260)
                      ...||+|||+|.+||+||+.+++.|  .+|+|+||....||.
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg~   43 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRSH   43 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCchh
Confidence            3469999999999999999999874  899999998876653

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.68  E-value=4.8e-05  Score=73.82  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.|||+||+.+++.|.+|+|+||....||.
T Consensus         7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~   45 (588)
T PRK08958          7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFPTRSH   45 (588)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence            469999999999999999999999999999999777664

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.68  E-value=5e-05  Score=70.47  Aligned_cols=42  Identities=29%  Similarity=0.392  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||+.|+++|+.|++.+  ++|+|+||.+.+|.-.+
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS   45 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESS   45 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccccccc
Confidence            3579999999999999999999998  99999999999985544

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.68  E-value=5.5e-05  Score=72.93  Aligned_cols=40  Identities=20%  Similarity=0.340  Sum_probs=35.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ....||+|||+|.|||+||+.+. +|.+|+|+||.+..||.
T Consensus         7 ~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~~gg~   46 (553)
T PRK07395          7 PSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTLKTSA   46 (553)
T ss_pred             cccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCCCCCc
Confidence            34579999999999999999986 59999999999987775

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.66  E-value=5.3e-05  Score=73.70  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.+||+||+.+++.|.+|+|+||....+|.
T Consensus        12 ~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~~~~g~   50 (598)
T PRK09078         12 KYDVVVVGAGGAGLRATLGMAEAGLKTACITKVFPTRSH   50 (598)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCCCCcc
Confidence            479999999999999999999999999999998766654

>PLN02815 L-aspartate oxidase

Probab=97.66  E-value=7.3e-05  Score=72.58  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ...||+|||+|.+||+||+.+++.| +|+|+||....||.
T Consensus        28 ~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~   66 (594)
T PLN02815         28 KYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESN   66 (594)
T ss_pred             cccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCc
Confidence            3479999999999999999999999 99999999988875

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.66  E-value=5.1e-05  Score=70.96  Aligned_cols=38  Identities=21%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|.+||+||..+. +|.+|+|+||.+..||.
T Consensus         4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~   41 (433)
T PRK06175          4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECN   41 (433)
T ss_pred             cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCc
Confidence            369999999999999999974 79999999999988875

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.66  E-value=5.4e-05  Score=73.32  Aligned_cols=40  Identities=28%  Similarity=0.453  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.+++.|   .+|+|+||....||..
T Consensus         5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            368999999999999999999998   8999999998877643

>TIGR00551 nadB L-aspartate oxidase

Probab=97.65  E-value=5.9e-05  Score=71.61  Aligned_cols=37  Identities=38%  Similarity=0.611  Sum_probs=34.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||+|.+||+||+.+++.|. |+|+||.+..||.
T Consensus         3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~   39 (488)
T TIGR00551         3 CDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGN   39 (488)
T ss_pred             ccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCc
Confidence            589999999999999999999998 9999999877765

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=97.64  E-value=4.2e-05  Score=68.05  Aligned_cols=41  Identities=32%  Similarity=0.459  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+|+|||||+-|+++|+.|+++|.+++++|+.+-+--+.+
T Consensus         7 ~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GS   47 (399)
T KOG2820|consen    7 SRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGS   47 (399)
T ss_pred             ceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCc
Confidence            46899999999999999999999999999999887654443

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.62  E-value=7.4e-05  Score=70.93  Aligned_cols=39  Identities=18%  Similarity=0.284  Sum_probs=34.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      ....||+|||||++|+++|+.|++.  |.+|+|+||.+.+|
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a   44 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA   44 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence            3456999999999999999999998  89999999966666

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.62  E-value=5.1e-05  Score=66.88  Aligned_cols=36  Identities=25%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~G   66 (260)
                      +|++|||+|.+|..+|.+|++.| .+|+|+|+.+...
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~   37 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYP   37 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCT
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCc
Confidence            48999999999999999999997 6999999987654

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.62  E-value=6.7e-05  Score=73.75  Aligned_cols=38  Identities=24%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..||+|||+|.+||+||+.++++|.+|+|+||.+..+|
T Consensus         5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~~~s   42 (657)
T PRK08626          5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPAKRS   42 (657)
T ss_pred             eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence            47999999999999999999999999999999877654

>PRK06996 hypothetical protein; Provisional

Probab=97.61  E-value=7e-05  Score=69.07  Aligned_cols=34  Identities=26%  Similarity=0.484  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~   63 (260)
                      ..+|+|||||++|+++|+.|++.|    ++|+|+|+.+
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            479999999999999999999987    4799999975

>PRK09897 hypothetical protein; Provisional

Probab=97.61  E-value=7.9e-05  Score=71.35  Aligned_cols=38  Identities=39%  Similarity=0.594  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccc-cc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG-GK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~G-G~   68 (260)
                      ++|+|||||++|+++|.+|.+.+  ++|+|||++..+| |.
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~   42 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGM   42 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcce
Confidence            58999999999999999998865  5899999999888 44

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.60  E-value=6.9e-05  Score=73.06  Aligned_cols=37  Identities=30%  Similarity=0.376  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      ..||+|||+|.|||+||+.+++.  |.+|+|+||.+..+
T Consensus        11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~   49 (608)
T PRK06854         11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKR   49 (608)
T ss_pred             EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCC
Confidence            46999999999999999999998  99999999987643

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=97.59  E-value=0.00013  Score=68.19  Aligned_cols=71  Identities=27%  Similarity=0.409  Sum_probs=52.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .+++-|||+|+|+|+||.+|.+.|    .+++|||+.+.+||.+....+ ..|+.+.-|... ...|..++++++.+
T Consensus         2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~~-~~~~eclwdLls~I   77 (500)
T PF06100_consen    2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRMM-EFHYECLWDLLSSI   77 (500)
T ss_pred             CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCccc-cchhHHHHHHHHhC
Confidence            367889999999999999999974    599999999999999875433 345544444333 45566666665544

>PRK08071 L-aspartate oxidase; Provisional

Probab=97.58  E-value=8.2e-05  Score=71.05  Aligned_cols=39  Identities=28%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.|||+||..+++ |.+|+|+||.+..||..
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~~~g~s   41 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTKRNSNS   41 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCCCCCCc
Confidence            4699999999999999999976 99999999999877753

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.58  E-value=8.9e-05  Score=71.32  Aligned_cols=39  Identities=36%  Similarity=0.457  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-cccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~   68 (260)
                      ...||+|||+|.|||+||+.+ +.|.+|+|+||... .||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG~   45 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSGC   45 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCcc
Confidence            347999999999999999999 89999999999865 4554

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.57  E-value=6.6e-05  Score=67.85  Aligned_cols=42  Identities=26%  Similarity=0.429  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||+|++|-.||...++.|++..|+|++..+||.+-
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL   79 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL   79 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence            468999999999999999999999999999999999999975

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.54  E-value=0.0001  Score=67.65  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEE-cccCccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIY-ESRSFIGGK   68 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~-E~~~~~GG~   68 (260)
                      ||+|||||+||..||+.+++.|.+|.++ ++.+.+|..
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~   38 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEM   38 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccc
Confidence            7999999999999999999999999999 666666543

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK08275 putative oxidoreductase; Provisional

Probab=97.53  E-value=9.9e-05  Score=71.17  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~   65 (260)
                      ..||+|||+|.|||+||+.++++  |.+|+|+||.+..
T Consensus         9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~   46 (554)
T PRK08275          9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK   46 (554)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            47999999999999999999987  6899999999864

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.53  E-value=0.00012  Score=69.48  Aligned_cols=42  Identities=24%  Similarity=0.474  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||+.|+.+|..++.+|++|+++|+++...|+..
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSs   52 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSS   52 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccC
Confidence            568999999999999999999999999999999999988754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=97.52  E-value=9e-05  Score=72.16  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=31.7

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      |+|||+|.|||+||+.+++.|.+|+|+||.+.+|
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~   34 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPR   34 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCC
Confidence            6899999999999999999999999999998554

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=97.51  E-value=0.00011  Score=71.36  Aligned_cols=40  Identities=23%  Similarity=0.349  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.+++.  |.+|+|+||....||..
T Consensus         4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s   45 (582)
T PRK09231          4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHT   45 (582)
T ss_pred             eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCh
Confidence            46999999999999999999987  47999999998777643

>PRK09077 L-aspartate oxidase; Provisional

Probab=97.50  E-value=0.00015  Score=69.64  Aligned_cols=39  Identities=31%  Similarity=0.511  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ...||+|||+|.+||+||+.+++. .+|+|+||....||.
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~   45 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGS   45 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCC
Confidence            347999999999999999999886 899999999887774

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=97.48  E-value=0.00012  Score=70.92  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|.+||+||+.++++  |.+|+|+||....||..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s   44 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT   44 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence            36899999999999999999987  58999999998877754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=97.47  E-value=0.00013  Score=65.94  Aligned_cols=35  Identities=34%  Similarity=0.518  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ....||+|||||++|-+.|+.|++.|.+|.|+||.
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            34579999999999999999999999999999995

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.44  E-value=0.00019  Score=66.28  Aligned_cols=37  Identities=24%  Similarity=0.482  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~   65 (260)
                      ..++|+|||||++|+++|..|+++|+  +|+++++.+..
T Consensus         2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            34689999999999999999999987  79999988654

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.41  E-value=0.00018  Score=70.14  Aligned_cols=34  Identities=24%  Similarity=0.508  Sum_probs=31.1

Q ss_pred             cEEEECCCHHHHHHHHHHH----HCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~----~~G~~v~v~E~~~~~   65 (260)
                      ||+|||+|.|||+||+.++    ++|.+|+|+||....
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~~   38 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANLE   38 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCCC
Confidence            6999999999999999998    679999999998753

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=97.41  E-value=0.00017  Score=67.28  Aligned_cols=36  Identities=33%  Similarity=0.559  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~G   66 (260)
                      ++|+|||||++|+++|..|++.+  .+|+|+|+++..+
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~   38 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS   38 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce
Confidence            47999999999999999999875  5999999998764

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.39  E-value=0.0002  Score=66.71  Aligned_cols=34  Identities=32%  Similarity=0.614  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+||+|||+|++|+++|+.|+++|++|+|+|+..
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence            4799999999999999999999999999999864

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.37  E-value=0.00023  Score=66.66  Aligned_cols=36  Identities=19%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      ++|+|||||++|+++|..|++.  +++|+|+|+++..+
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~   39 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   39 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc
Confidence            5899999999999999999887  57999999988654

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.37  E-value=0.00022  Score=69.27  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..||+|||+|.+||+||+.+++. .+|+|+||....||
T Consensus         5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~~~~g   41 (583)
T PRK08205          5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLYPTRS   41 (583)
T ss_pred             eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCCCCCC
Confidence            36899999999999999999876 89999999876665

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.37  E-value=0.00023  Score=68.56  Aligned_cols=40  Identities=28%  Similarity=0.469  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .+.||+|||+|.|||.||..++++|.+|.|+||....+|.
T Consensus         5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~   44 (562)
T COG1053           5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGH   44 (562)
T ss_pred             ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCc
Confidence            4579999999999999999999999999999999887754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.34  E-value=0.00029  Score=62.85  Aligned_cols=41  Identities=39%  Similarity=0.645  Sum_probs=36.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc--Ccccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR--SFIGGKV   69 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~--~~~GG~~   69 (260)
                      ...+|+|||||++||.||..|+.+|++|+|+|+.  ..+||..
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA   46 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA   46 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence            3578999999999999999999999999999876  4567763

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=97.30  E-value=0.00026  Score=56.80  Aligned_cols=37  Identities=35%  Similarity=0.622  Sum_probs=30.1

Q ss_pred             EEECCCHHHHHHHHHHHHC-----CCcEEEEcccCcc-cccce
Q 024958           34 AIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFI-GGKVG   70 (260)
Q Consensus        34 ~VIGaG~aGl~aA~~L~~~-----G~~v~v~E~~~~~-GG~~~   70 (260)
                      +|||+|++|++++.+|.++     ..+|+|||+++.- |+.|+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~   43 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYR   43 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCC
Confidence            6999999999999999988     4699999996652 23444

>PRK02106 choline dehydrogenase; Validated

Probab=97.28  E-value=0.00032  Score=67.70  Aligned_cols=34  Identities=32%  Similarity=0.361  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~   63 (260)
                      ..|++|||+|.+|+.+|.+|++ .|++|+|+|+.+
T Consensus         5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~   39 (560)
T PRK02106          5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG   39 (560)
T ss_pred             cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            4799999999999999999999 799999999985

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.24  E-value=0.00042  Score=64.56  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=34.1

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++++|+|||||.+|+.+|..|.+.+++|+|+|+++.
T Consensus         6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~   44 (424)
T PTZ00318          6 ARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH   44 (424)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence            456678999999999999999999877899999998764

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=97.22  E-value=0.00041  Score=61.74  Aligned_cols=33  Identities=36%  Similarity=0.636  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..+|+|||+|++||+||.+|+++|+++.|+-+.
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g   34 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG   34 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence            479999999999999999999999999999764

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.22  E-value=0.00016  Score=63.15  Aligned_cols=41  Identities=34%  Similarity=0.667  Sum_probs=37.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC------CcEEEEcccCccccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGK   68 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G------~~v~v~E~~~~~GG~   68 (260)
                      ..+++|+|+|+|+.|.++||.|++++      ++++|||+....||.
T Consensus         8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga   54 (380)
T KOG2852|consen    8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA   54 (380)
T ss_pred             CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence            34589999999999999999999998      799999999888875

>PRK07846 mycothione reductase; Reviewed

Probab=97.18  E-value=0.00048  Score=64.77  Aligned_cols=67  Identities=4%  Similarity=-0.005  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          162 NDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       162 ~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      .+.++-+....|.+|++||.+.   ...++..+.   ..+...++.++|+|+|.+|.++|..+.+.+.+|+.+
T Consensus       129 ~d~lViATGs~p~~p~i~g~~~---~~~~~~~~~---~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli  195 (451)
T PRK07846        129 ADQVVIAAGSRPVIPPVIADSG---VRYHTSDTI---MRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVV  195 (451)
T ss_pred             eCEEEEcCCCCCCCCCCCCcCC---ccEEchHHH---hhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            3455555566888888888642   112221221   122233678899999999999999999877665543

>TIGR03452 mycothione_red mycothione reductase

Probab=97.16  E-value=0.00052  Score=64.54  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||+|++|..+|.  +..|.+|.++|+ +.+||.|-
T Consensus         2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~-~~~GGtC~   39 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEK-GTFGGTCL   39 (452)
T ss_pred             CcCEEEECCCHHHHHHHH--HHCCCeEEEEeC-CCCCCeee
Confidence            479999999999998865  457999999998 56899986

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.13  E-value=0.00036  Score=65.10  Aligned_cols=35  Identities=37%  Similarity=0.607  Sum_probs=31.4

Q ss_pred             EECCCHHHHHHHHHHHHCCCcEEEEcccCc--ccccc
Q 024958           35 IIGAGLAGMSTAVELLDQGHEVDIYESRSF--IGGKV   69 (260)
Q Consensus        35 VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~--~GG~~   69 (260)
                      |||+|.+|++||+.++++|.+|+|+||.+.  .||..
T Consensus         1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s   37 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA   37 (432)
T ss_pred             CCcccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence            799999999999999999999999999884  46653

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR00136 gidA glucose-inhibited division protein A

Probab=97.13  E-value=0.00068  Score=65.58  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=32.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .||+|||||++|+.+|..+++.|.+|+++|+....+|
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g   37 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIG   37 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence            4899999999999999999999999999998754433

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.13  E-value=0.0006  Score=62.22  Aligned_cols=40  Identities=28%  Similarity=0.542  Sum_probs=38.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      .++|+|||+|..||-+|..|+++|++|+++|+.+.+||+.
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~  175 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQL  175 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhh
Confidence            4799999999999999999999999999999999999975

>PRK07512 L-aspartate oxidase; Provisional

Probab=97.11  E-value=0.00049  Score=65.80  Aligned_cols=38  Identities=26%  Similarity=0.417  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc-cccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF-IGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~-~GG~   68 (260)
                      ...||+|||+|.+||+||+.++  |.+|+|+||... .||.
T Consensus         8 ~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~~~gg~   46 (513)
T PRK07512          8 LTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPLGEGAS   46 (513)
T ss_pred             CcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCCCCCcc
Confidence            3479999999999999999986  579999999987 3443

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.10  E-value=0.0006  Score=69.42  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...||+|||+|.+||+||+.+++.|.+|+|+||...
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            347999999999999999999999999999999875

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.06  E-value=0.00065  Score=60.38  Aligned_cols=39  Identities=36%  Similarity=0.610  Sum_probs=36.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .|+|||+|++||+|+..+...|-.|+++|++..+||+.-
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            699999999999999999999888999999999999854

>TIGR01810 betA choline dehydrogenase

Probab=97.04  E-value=0.00054  Score=65.72  Aligned_cols=33  Identities=30%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~   64 (260)
                      |++|||+|.+|+.+|.+|+++| ++|+|+|+...
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~   34 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGS   34 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCC
Confidence            6899999999999999999998 79999999853

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.02  E-value=0.00017  Score=65.79  Aligned_cols=40  Identities=20%  Similarity=0.121  Sum_probs=33.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~~   70 (260)
                      ...|++.||-|++-|+.|+.|...+ +++..|||.+..  +|+
T Consensus         4 ~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F--~WH   44 (436)
T COG3486           4 EVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF--SWH   44 (436)
T ss_pred             cceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC--CcC
Confidence            4579999999999999999998875 789999998765  455

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=97.02  E-value=0.00084  Score=62.30  Aligned_cols=33  Identities=39%  Similarity=0.666  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+|||+|++|+++|+.|.+.|++|.|+|+..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~   33 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ   33 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            489999999999999999999999999999875

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.0019  Score=60.22  Aligned_cols=43  Identities=35%  Similarity=0.543  Sum_probs=36.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccccceee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG~~~~~   72 (260)
                      .++|+|||+|++|+.+|.+|.+.-   ..+.|||+.+..|+-..+-
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs   46 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS   46 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence            368999999999999999999852   1399999999999877643

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.92  E-value=0.0009  Score=63.02  Aligned_cols=33  Identities=36%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~   64 (260)
                      ||+|||+|.+|..+|..|++.+   ++|+|+|+...
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~   36 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDI   36 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCC
Confidence            6999999999999999999998   89999999753

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0083  Score=58.04  Aligned_cols=72  Identities=25%  Similarity=0.262  Sum_probs=46.4

Q ss_pred             CCcccccccCCCC-CCCC-------C-CCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEccc-Ccccccc
Q 024958            1 MGSSLLLVSGSTE-DPKC-------L-FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESR-SFIGGKV   69 (260)
Q Consensus         1 ~~~~~~~~~~~~~-~~~~-------~-~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~-~~~GG~~   69 (260)
                      ||-++++-+++++ .|.+       + .+.+++.+-....+|+|||+|.+|.++||+|+++|.+ ..++|+. -..|+.|
T Consensus         1 ~g~~nl~~~a~~~~~~~~v~~~qg~~~~~~s~s~~~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ltsgttw   80 (856)
T KOG2844|consen    1 MGRCNLLSAAGEKGVPYQVKERQGTSVVARSPSTPLPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTSGTTW   80 (856)
T ss_pred             CccchhhhhcCCCCCchhhcccCcccccccCccccCCCcccEEEEcCCchhHHHHHHHHHccccceEEEeeeeecccccc
Confidence            6667777776632 1111       1 1222222233347999999999999999999999987 4455544 4457777


Q ss_pred             eee
Q 024958           70 GSF   72 (260)
Q Consensus        70 ~~~   72 (260)
                      +++
T Consensus        81 hta   83 (856)
T KOG2844|consen   81 HTA   83 (856)
T ss_pred             ccc
Confidence            754

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.74  E-value=0.0015  Score=58.18  Aligned_cols=37  Identities=38%  Similarity=0.618  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ...|.|||||++|.-||+.++++|+.|.++|..+.-+
T Consensus         3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~   39 (439)
T COG1206           3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKG   39 (439)
T ss_pred             CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccC
Confidence            4679999999999999999999999999999987654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=96.74  E-value=0.0016  Score=57.81  Aligned_cols=42  Identities=19%  Similarity=0.388  Sum_probs=36.9

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG   67 (260)
                      ...++.|.+|||||+.|++.|..|.-+  +++|.|+|+...++-
T Consensus        44 ~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~   87 (453)
T KOG2665|consen   44 ISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAV   87 (453)
T ss_pred             cccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhce
Confidence            345679999999999999999998887  899999999988763

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.71  E-value=0.00039  Score=58.36  Aligned_cols=39  Identities=38%  Similarity=0.488  Sum_probs=34.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV   69 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~   69 (260)
                      .||+|||||-+||++||...++  .++|.|+|..-.+||-.
T Consensus        77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa  117 (328)
T KOG2960|consen   77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA  117 (328)
T ss_pred             cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence            5899999999999999999876  47999999998887653

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.70  E-value=0.0022  Score=51.53  Aligned_cols=32  Identities=44%  Similarity=0.666  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|+|||||..|.+.|..|+++|++|+++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            69999999999999999999999999998765

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.68  E-value=0.0017  Score=62.46  Aligned_cols=36  Identities=31%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|++|||+|.+|-..|.+|+..|++|+|+|+..
T Consensus         5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            346899999999999999999998899999999873

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.67  E-value=0.0034  Score=59.43  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|||+|.+|+++|..|+++|++|+++|+.+.
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            346899999999999999999999999999997653

>PLN02785 Protein HOTHEAD

Probab=96.60  E-value=0.0036  Score=60.87  Aligned_cols=35  Identities=23%  Similarity=0.337  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|++|||+|.+|+.+|.+|++ +.+|+|+|+...
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            35899999999999999999999 689999999864

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=96.59  E-value=0.0018  Score=57.98  Aligned_cols=35  Identities=37%  Similarity=0.432  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|.+.|+.|.++    |++|+|+|+++.
T Consensus        86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt  124 (509)
T KOG2853|consen   86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT  124 (509)
T ss_pred             ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence            58999999999999999999874    799999999874

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.57  E-value=0.0033  Score=58.11  Aligned_cols=36  Identities=28%  Similarity=0.553  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      .+++|+|||||.+||.+|..|.++-  .+++++|+++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc
Confidence            4689999999999999999999974  88999999764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.57  E-value=0.0023  Score=58.06  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=29.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~   64 (260)
                      +|+|||||++|+.+|.+|+++   +++|+|+|+++.
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~   36 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence            589999999999999999754   689999998765

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.46  E-value=0.0025  Score=52.74  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=27.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||.|..||.+|..|++.|++|+.+|.+..
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChH
Confidence            5899999999999999999999999999998765

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.46  E-value=0.0038  Score=51.42  Aligned_cols=33  Identities=39%  Similarity=0.558  Sum_probs=28.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +|+|||||..|...|..++..|++|+++|.++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   33 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            589999999999999999999999999998653

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.36  E-value=0.0044  Score=58.24  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=31.5

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +|.|||+|.+|+++|..|.++|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            6999999999999999999999999999987654

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.32  E-value=0.0057  Score=56.40  Aligned_cols=39  Identities=26%  Similarity=0.407  Sum_probs=35.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  182 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR  182 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence            468999999999999999999999999999998876543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.29  E-value=0.0054  Score=54.71  Aligned_cols=34  Identities=41%  Similarity=0.613  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|.+.|..|+++|++|++++++..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            5799999999999999999999999999998753

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.22  E-value=0.0081  Score=54.02  Aligned_cols=35  Identities=23%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|...|..++..|++|+++|..+.
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~   41 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPG   41 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998643

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.11  E-value=0.0082  Score=53.06  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|+|||+|..|.+.|..|+++|++|+++++++
T Consensus         3 ~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          3 AIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            34689999999999999999999999999999864

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.10  E-value=0.0093  Score=55.74  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+..
T Consensus       157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  194 (438)
T PRK07251        157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILP  194 (438)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCC
Confidence            46899999999999999999999999999999887643

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.05  E-value=0.009  Score=52.84  Aligned_cols=35  Identities=26%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+|+|||+|..|...|..|++.|++|+++|.++..
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~   40 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEEL   40 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999999999999999999999999999887653

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.03  E-value=0.011  Score=56.10  Aligned_cols=52  Identities=73%  Similarity=1.096  Sum_probs=45.0

Q ss_pred             hhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHH
Q 024958          173 SLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYI  224 (260)
Q Consensus       173 p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el  224 (260)
                      +.+...||.+..++.+.++..+++.+++|..++|+..++|+..||.++|..|
T Consensus       422 a~~~~~pg~~~~~P~~~t~~~~l~lAGD~t~~~~pas~egAv~sG~~aA~~i  473 (474)
T TIGR02732       422 SLYREAPGMDPFRPDQKTPISNFFLAGSYTQQDYIDSMEGATLSGRQAAAAI  473 (474)
T ss_pred             ceeccCCCCcccCCCCCCCCCCeEEeccccccCchHHHhHHHHHHHHHHHHh
Confidence            3344558988888888888899999999999999999999999999999765

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.96  E-value=0.0061  Score=57.12  Aligned_cols=33  Identities=33%  Similarity=0.539  Sum_probs=30.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +|+|||+|++||++|..|.+. ++|+|+-|.+.-
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCC
Confidence            899999999999999999988 999999987764

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.95  E-value=0.01  Score=50.65  Aligned_cols=34  Identities=41%  Similarity=0.606  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++++|||+|.-|.+.|..|.+.|++|+++|+.+.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~   34 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE   34 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence            5799999999999999999999999999998764

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.94  E-value=0.011  Score=52.11  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|++.|++|+++|.++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            3689999999999999999999999999998764

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.93  E-value=0.011  Score=55.91  Aligned_cols=36  Identities=33%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i  215 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI  215 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc
Confidence            378999999999999999999999999999998765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.90  E-value=0.022  Score=53.61  Aligned_cols=37  Identities=24%  Similarity=0.270  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|.+.|.+|+++|+.+.+.
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll  206 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL  206 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            4689999999999999999999999999999987653

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=95.89  E-value=0.012  Score=53.85  Aligned_cols=37  Identities=24%  Similarity=0.466  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.+.+.
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l  177 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL  177 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence            4689999999999999999999999999999877653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.88  E-value=0.019  Score=54.08  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +++++|||||..|+-.|.-+++.|.+|+|+|+.+++-
T Consensus       173 P~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL  209 (454)
T COG1249         173 PKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL  209 (454)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4789999999999999999999999999999988764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.013  Score=54.82  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|.+|+++|..|+++|++|+++|+..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            35789999999999999999999999999999864

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.83  E-value=0.012  Score=46.49  Aligned_cols=31  Identities=35%  Similarity=0.557  Sum_probs=29.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      |+|+|+|..|...|++|++.|++|+++-+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            7899999999999999999999999998876

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.82  E-value=0.012  Score=52.00  Aligned_cols=34  Identities=21%  Similarity=0.366  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|...|..|+++|++|+++|+++.
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence            4799999999999999999999999999988643

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=95.78  E-value=0.014  Score=54.89  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  206 (461)
T TIGR01350       170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL  206 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC
Confidence            3689999999999999999999999999999987654

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.73  E-value=0.017  Score=51.54  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|..|...|..|++.|++|+++.++.
T Consensus         4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            34789999999999999999999999999998854

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.71  E-value=0.015  Score=51.33  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|.+.|..|++.|++|+++|+++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~   37 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEE   37 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            6899999999999999999999999999998753

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.70  E-value=0.018  Score=46.72  Aligned_cols=35  Identities=34%  Similarity=0.439  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|+|.+|+.|+..|...|.+|+++|...
T Consensus        19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~   53 (168)
T PF01262_consen   19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP   53 (168)
T ss_dssp             -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred             CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence            35799999999999999999999999999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02053 MerA mercuric reductase

Probab=95.66  E-value=0.016  Score=54.50  Aligned_cols=37  Identities=27%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  202 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL  202 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC
Confidence            3789999999999999999999999999999987654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.65  E-value=0.015  Score=54.26  Aligned_cols=35  Identities=20%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||.|..|+..|..|+++|++|++++.+..
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~   37 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQH   37 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999987544

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.63  E-value=0.018  Score=54.48  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il  210 (471)
T PRK06467        174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI  210 (471)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC
Confidence            3789999999999999999999999999999988654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.60  E-value=0.018  Score=54.20  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  208 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL  208 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC
Confidence            3689999999999999999999999999999987653

>PRK06370 mercuric reductase; Validated

Probab=95.59  E-value=0.02  Score=53.95  Aligned_cols=38  Identities=26%  Similarity=0.312  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~  208 (463)
T PRK06370        171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP  208 (463)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence            47899999999999999999999999999999887643

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.55  E-value=0.02  Score=54.07  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il  210 (466)
T PRK06115        174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRIC  210 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCC
Confidence            4789999999999999999999999999999887653

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.53  E-value=0.021  Score=53.74  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il  202 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            4799999999999999999999999999999987754

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.52  E-value=0.021  Score=53.63  Aligned_cols=38  Identities=26%  Similarity=0.403  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            47899999999999999999999999999999887653

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.51  E-value=0.021  Score=53.66  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  211 (461)
T PRK05249        175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL  211 (461)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            4789999999999999999999999999999988654

>PRK07846 mycothione reductase; Reviewed

Probab=95.50  E-value=0.021  Score=53.71  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.46  E-value=0.018  Score=52.74  Aligned_cols=32  Identities=34%  Similarity=0.607  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ++|.|||.|-.||+.|..|++.||+|+++|..
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid   32 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDID   32 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence            58999999999999999999999999999874

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.43  E-value=0.021  Score=50.35  Aligned_cols=32  Identities=38%  Similarity=0.622  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ++|+|||+|..|...|..|++.|++|+++.++
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            37999999999999999999999999999884

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=95.42  E-value=0.025  Score=52.93  Aligned_cols=44  Identities=27%  Similarity=0.416  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~   73 (260)
                      ..||+|+|.|+.-...|..|++.|++|+.+|+++.=||.|++..
T Consensus         4 ~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~   47 (438)
T PF00996_consen    4 EYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN   47 (438)
T ss_dssp             BESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-
T ss_pred             cceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc
Confidence            48999999999988888899999999999999999999998754

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=95.42  E-value=0.02  Score=47.18  Aligned_cols=35  Identities=20%  Similarity=0.375  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|.++.-+|..|.+.|.+|+++=|.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence            35899999999999999999999999999998765

...

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.40  E-value=0.025  Score=52.61  Aligned_cols=36  Identities=31%  Similarity=0.469  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            468999999999999999999999999999988765

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.38  E-value=0.024  Score=53.43  Aligned_cols=37  Identities=32%  Similarity=0.293  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  208 (466)
T PRK07818        172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL  208 (466)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence            3689999999999999999999999999999877653

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=95.38  E-value=0.006  Score=55.44  Aligned_cols=41  Identities=32%  Similarity=0.588  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~~~~GG~~~   70 (260)
                      .+.+-|||+|++||++|..|.+.    |.++.|+|.-+..||..-
T Consensus        22 qKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlD   66 (587)
T COG4716          22 QKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLD   66 (587)
T ss_pred             cceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCC
Confidence            47899999999999999999986    469999999999999754

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.37  E-value=0.024  Score=49.80  Aligned_cols=34  Identities=26%  Similarity=0.307  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+|+|||+|..|.+.|..|+++|++|+++|.++.
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~   37 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDA   37 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHH
Confidence            5799999999999999999999999999986543

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.34  E-value=0.024  Score=53.11  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..+|+|||+|..|+-.|..|++.|.+|+++++.+.+..
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            36899999999999999999999999999999876543

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.32  E-value=0.026  Score=53.39  Aligned_cols=36  Identities=33%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  218 (475)
T PRK06327        183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAF  218 (475)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCcc
Confidence            379999999999999999999999999999998765

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.28  E-value=0.025  Score=49.97  Aligned_cols=31  Identities=29%  Similarity=0.586  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ++|+|||+|..|...|..|++.|++|+++.+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            4799999999999999999999999999987

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.031  Score=47.52  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc----cCcccccceeee
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES----RSFIGGKVGSFI   73 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~----~~~~GG~~~~~~   73 (260)
                      -+|+|||.|+++-.||++++++-++.++||.    +..+||...+..
T Consensus         9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence            3899999999999999999999999999996    234477766543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.24  E-value=0.028  Score=49.74  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|...|..|++.|++|+++|+++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            679999999999999999999999999999765

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.21  E-value=0.025  Score=50.93  Aligned_cols=33  Identities=21%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|++|+++++..
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~   35 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR   35 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence            579999999999999999999999999999864

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.21  E-value=0.029  Score=49.99  Aligned_cols=33  Identities=27%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|...|..|++.|.+|+++.+.
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            468999999999999999999999999999985

>TIGR03452 mycothione_red mycothione reductase

Probab=95.17  E-value=0.031  Score=52.61  Aligned_cols=37  Identities=19%  Similarity=0.209  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll  205 (452)
T TIGR03452       169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL  205 (452)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence            4789999999999999999999999999999987653

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=95.09  E-value=0.049  Score=42.52  Aligned_cols=35  Identities=29%  Similarity=0.373  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~   63 (260)
                      ..++|+|||||-+|-++++.|.+.|.+ ++|+-|..
T Consensus        11 ~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~   46 (135)
T PF01488_consen   11 KGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP   46 (135)
T ss_dssp             TTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence            458999999999999999999999986 99998753

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.08  E-value=0.02  Score=50.49  Aligned_cols=32  Identities=34%  Similarity=0.582  Sum_probs=26.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYES   61 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-------~~v~v~E~   61 (260)
                      .++|+|||||+.||++|..+.+.+       .+|+|++-
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D   41 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD   41 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence            479999999999999999888854       47788754

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.99  E-value=0.048  Score=45.86  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|..|...+..|.+.|.+|+|+....
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35799999999999999999999999999997653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.027  Score=50.69  Aligned_cols=33  Identities=27%  Similarity=0.425  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      -..|.+|||+|-+||++|...+..|.+|.|+|-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            348999999999999999999999999999985

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.86  E-value=0.049  Score=48.59  Aligned_cols=34  Identities=35%  Similarity=0.486  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||+|..|.+.|..|.+.|++|+++.++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999864

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.85  E-value=0.043  Score=51.19  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+-
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  185 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL  185 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence            4689999999999999999999999999999877543

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.83  E-value=0.047  Score=43.99  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||-|..|...|.+|.++|++|.++++...
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~   35 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPE   35 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchh
Confidence            5899999999999999999999999999998753

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.83  E-value=0.032  Score=51.88  Aligned_cols=34  Identities=38%  Similarity=0.547  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||.|..|+..|..|+++|++|++++++..
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            3799999999999999999999999999998654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.83  E-value=0.039  Score=49.13  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|.+.|..|++.|++|++++.+.
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999998754

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.82  E-value=0.038  Score=55.69  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL  175 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch
Confidence            468999999999999999999999999999987765

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.82  E-value=0.041  Score=52.67  Aligned_cols=36  Identities=28%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            479999999999999999999999999999976654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=94.81  E-value=0.048  Score=51.50  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+...
T Consensus       177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~  215 (466)
T PRK07845        177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG  215 (466)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence            368999999999999999999999999999998766543

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=94.70  E-value=0.032  Score=52.99  Aligned_cols=42  Identities=26%  Similarity=0.492  Sum_probs=38.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||..|-.+|.-.+-+|+++.++|+.+-.-|+.+
T Consensus        66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SGTSS  107 (680)
T KOG0042|consen   66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASGTSS  107 (680)
T ss_pred             CcccEEEECCCccCcceeehhhcccceeEEEecccccCCccc
Confidence            358999999999999999999999999999999998888754

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.70  E-value=0.046  Score=49.09  Aligned_cols=33  Identities=33%  Similarity=0.560  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|++|+++++..
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~   37 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP   37 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            589999999999999999999999999999854

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=94.67  E-value=0.051  Score=50.99  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~  201 (446)
T TIGR01424       166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI  201 (446)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence            468999999999999999999999999999988765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.65  E-value=0.046  Score=52.12  Aligned_cols=33  Identities=30%  Similarity=0.539  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|+++|++|+++++++
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            579999999999999999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=94.65  E-value=0.048  Score=52.81  Aligned_cols=37  Identities=16%  Similarity=0.210  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il  273 (561)
T PTZ00058        237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL  273 (561)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            4789999999999999999999999999999987653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.62  E-value=0.056  Score=48.27  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      ++|.|||+|..|...|+.|+.+|+ +|+++|....
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~   36 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEG   36 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCC
Confidence            589999999999999999999887 8999997443

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=94.62  E-value=0.041  Score=52.40  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      .+||+|||||.||.-||...++.|.++.++-.
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~   35 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTL   35 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence            48999999999999999999999999888755

>PRK06116 glutathione reductase; Validated

Probab=94.56  E-value=0.056  Score=50.68  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAP  202 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            478999999999999999999999999999987754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=94.54  E-value=0.048  Score=52.10  Aligned_cols=35  Identities=37%  Similarity=0.539  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||+|..|...|..|++.|++|+++|+++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e   39 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAE   39 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            46799999999999999999999999999998744

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.53  E-value=0.069  Score=42.95  Aligned_cols=33  Identities=30%  Similarity=0.291  Sum_probs=30.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      ...++|+|||||-.|..-+..|.+.|.+|+|+.
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs   43 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS   43 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            345899999999999999999999999999994

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.52  E-value=0.049  Score=48.51  Aligned_cols=33  Identities=33%  Similarity=0.661  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            479999999999999999999999999998864

>PLN02507 glutathione reductase

Probab=94.52  E-value=0.056  Score=51.58  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+|+++.+.+
T Consensus       203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~  238 (499)
T PLN02507        203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELP  238 (499)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCc
Confidence            468999999999999999999999999999998764

>PRK10262 thioredoxin reductase; Provisional

Probab=94.48  E-value=0.056  Score=48.20  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus       146 g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~  180 (321)
T PRK10262        146 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG  180 (321)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCc
Confidence            47899999999999999999999999999998764

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=94.47  E-value=0.062  Score=51.43  Aligned_cols=35  Identities=37%  Similarity=0.508  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      -++|.|||+|..|...|..|++.|++|+++|++..
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999997654

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.45  E-value=0.057  Score=48.41  Aligned_cols=33  Identities=27%  Similarity=0.532  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||||.-|.+.|..|++.|++|+++.++.
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~   33 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNH   33 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence            369999999999999999999999999999853

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.45  E-value=0.057  Score=53.28  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            46899999999999999999999999999999887653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=94.45  E-value=0.052  Score=55.10  Aligned_cols=36  Identities=28%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++++|||+|..|+-+|..|++.|.+|+|+|..+.+
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l  180 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML  180 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc
Confidence            468999999999999999999999999999998764

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.44  E-value=0.056  Score=50.92  Aligned_cols=34  Identities=26%  Similarity=0.510  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|+|.|.+|+++|..|.+.|++|++.|+++
T Consensus        14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4689999999999999999999999999999764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.44  E-value=0.05  Score=51.48  Aligned_cols=33  Identities=18%  Similarity=0.048  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|.|.+|.++|..|.++|.+|++.|.+
T Consensus         8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            468999999999999999999999999999964

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.43  E-value=0.064  Score=50.14  Aligned_cols=37  Identities=27%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l  194 (441)
T PRK08010        158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL  194 (441)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence            3689999999999999999999999999999987654

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=94.42  E-value=0.072  Score=44.65  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|||||-.|...+..|.+.|.+|+|+.+.
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4579999999999999999999999999999754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.38  E-value=0.06  Score=51.53  Aligned_cols=37  Identities=27%  Similarity=0.411  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            3478999999999999999999999999999877653

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.35  E-value=0.066  Score=49.14  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|||+|..|+.+|..|...|.+|++++++.
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~  200 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINI  200 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            45779999999999999999999999999999764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02256 arogenate dehydrogenase

Probab=94.33  E-value=0.066  Score=47.81  Aligned_cols=60  Identities=27%  Similarity=0.245  Sum_probs=45.3

Q ss_pred             ccccccCCCCCCCCCCCCCCCCC-CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958            4 SLLLVSGSTEDPKCLFPPEPEHY-GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ||...+-...+|+....+..+.. .+..++|+|||.|..|-+.|..|.+.|++|.+++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~   69 (304)
T PLN02256          9 SLRVRAIDAAQPFDYESRLQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD   69 (304)
T ss_pred             CcccccccccCCCChHhHHhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence            44445555667777665554433 4556799999999999999999999999999998764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.32  E-value=0.086  Score=50.35  Aligned_cols=36  Identities=33%  Similarity=0.509  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+..+|+|||+|+.||.++..+...|.+|+++|.++
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            356799999999999999999999999999988754

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.27  E-value=0.069  Score=50.22  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|+-+|..|.+.|.+|+++++.+.
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            47899999999999999999999999999988653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK04148 hypothetical protein; Provisional

Probab=94.23  E-value=0.042  Score=42.98  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|++||.| .|...|..|++.|++|+.+|.++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            689999999 898889999999999999998765

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.22  E-value=0.066  Score=51.76  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.
T Consensus       143 g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~  177 (555)
T TIGR03143       143 GMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD  177 (555)
T ss_pred             CCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCc
Confidence            47899999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=94.21  E-value=0.094  Score=48.32  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC----CCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ----GHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~----G~~v~v~E~~   62 (260)
                      ..||+|+|||+.|++.|..|...    -++|.++|..
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~   72 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG   72 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence            68999999999999999998864    2599999988

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.21  E-value=0.067  Score=50.91  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|.|.+|++++..|.++|.+|++.|.+
T Consensus        12 ~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         12 GAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999999965

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=94.20  E-value=0.0083  Score=58.65  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=49.6

Q ss_pred             CChhHHHHHHHHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhh
Q 024958          160 LPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  230 (260)
Q Consensus       160 ~~~~el~~av~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~  230 (260)
                      ...+.++-+....|+++++||.+.+.--...++.+......++-.++..+|+|.|.-|..+|.-|.+.+-.
T Consensus       100 ~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLGlEaA~~L~~~Gm~  170 (793)
T COG1251         100 VSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGME  170 (793)
T ss_pred             eecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHHHhccCCcEEEccchhhhHHHHHHHhCCCc
Confidence            45566777777899999999998765534334344333344444455567899999999999999875533

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.17  E-value=0.073  Score=47.56  Aligned_cols=34  Identities=41%  Similarity=0.623  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|.+.|+.|+.+|  .++.++|++..
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~   36 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA   36 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence            47999999999999999999999  48999998653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.15  E-value=0.044  Score=40.73  Aligned_cols=34  Identities=24%  Similarity=0.397  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|||+|..|..-+..|.+.|.+|+|+-..
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence            4578999999999999999999999999999876

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.13  E-value=0.056  Score=50.68  Aligned_cols=36  Identities=33%  Similarity=0.473  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|+|-|.+|+++|..|.++|.+|+++|..+..
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            589999999999999999999999999999976655

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.07  E-value=0.084  Score=52.63  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +-++|+|||||..|...|+.++..|++|+++|.++.
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (715)
T PRK11730        312 PVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQK  347 (715)
T ss_pred             ccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHH
Confidence            346899999999999999999999999999998754

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.05  E-value=0.097  Score=42.60  Aligned_cols=35  Identities=26%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ...++|+|||+|- +|..+|..|.++|.+|++..+.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            4468999999996 6999999999999999988864

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK13748 putative mercuric reductase; Provisional

Probab=94.02  E-value=0.081  Score=51.03  Aligned_cols=34  Identities=21%  Similarity=0.381  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~  303 (561)
T PRK13748        270 PERLAVIGSSVVALELAQAFARLGSKVTILARST  303 (561)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence            3689999999999999999999999999999753

>PRK14694 putative mercuric reductase; Provisional

Probab=94.00  E-value=0.089  Score=49.67  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus       178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~  210 (468)
T PRK14694        178 PERLLVIGASVVALELAQAFARLGSRVTVLARS  210 (468)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence            468999999999999999999999999999874

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=93.98  E-value=0.089  Score=45.82  Aligned_cols=35  Identities=23%  Similarity=0.357  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|.+|+-.|..|++.+.+|+++++.+.
T Consensus       141 ~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~  175 (300)
T TIGR01292       141 NKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDK  175 (300)
T ss_pred             CCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcc
Confidence            46899999999999999999999999999998653

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.97  E-value=0.085  Score=49.45  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|+|.|.+|+++|..|+++|++|+++|..+.
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            46899999999999999999999999999997654

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=93.95  E-value=0.084  Score=49.47  Aligned_cols=39  Identities=18%  Similarity=0.326  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~   68 (260)
                      ..||++||||+.|.+.++.|.+.  ..++.||||-+.++.-
T Consensus         3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A~E   43 (488)
T PF06039_consen    3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVALE   43 (488)
T ss_pred             ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcchhh
Confidence            57999999999999999999986  5799999999988754

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK12831 putative oxidoreductase; Provisional

Probab=93.95  E-value=0.086  Score=49.84  Aligned_cols=35  Identities=40%  Similarity=0.460  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~  314 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS  314 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence            34799999999999999999999999999998754

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.93  E-value=0.07  Score=49.30  Aligned_cols=33  Identities=27%  Similarity=0.465  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||.|..|+..|..++. |++|+++|.+..
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~   33 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPS   33 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHH
Confidence            379999999999999987775 999999997543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.90  E-value=0.07  Score=46.89  Aligned_cols=33  Identities=36%  Similarity=0.546  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            379999999999999999999999999999764

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=93.88  E-value=0.093  Score=50.80  Aligned_cols=39  Identities=21%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFI   65 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~   65 (260)
                      ....+|.+|||||-||...|.+|.+. ..+|+++|+....
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            34569999999999999999999987 4799999997766

>PLN02546 glutathione reductase

Probab=93.81  E-value=0.088  Score=50.98  Aligned_cols=37  Identities=19%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|.+.|.+|+++|+.+.+.
T Consensus       252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il  288 (558)
T PLN02546        252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL  288 (558)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc
Confidence            4789999999999999999999999999999987653

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.78  E-value=0.094  Score=47.52  Aligned_cols=34  Identities=35%  Similarity=0.489  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~   63 (260)
                      .++|+|||+|..|+-+|..|.+.|.+ |+|+++.+
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~  206 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT  206 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence            36899999999999999999999987 99998754

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=93.74  E-value=0.11  Score=51.90  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +-++|+|||||..|-..|+.++..|++|+++|.+..
T Consensus       312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~  347 (714)
T TIGR02437       312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQH  347 (714)
T ss_pred             ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            457899999999999999999999999999997643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.74  E-value=0.072  Score=49.01  Aligned_cols=44  Identities=30%  Similarity=0.447  Sum_probs=39.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~   73 (260)
                      ..||+|||.|+.--..|..+.+.|..|+=+|.+..-||.|.++.
T Consensus         8 ~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS   51 (547)
T KOG4405|consen    8 EFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS   51 (547)
T ss_pred             hccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee
Confidence            58999999999877777778899999999999999999999764

>PRK14727 putative mercuric reductase; Provisional

Probab=93.72  E-value=0.1  Score=49.39  Aligned_cols=33  Identities=18%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus       188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~  220 (479)
T PRK14727        188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS  220 (479)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence            378999999999999999999999999999875

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.67  E-value=0.13  Score=40.42  Aligned_cols=33  Identities=42%  Similarity=0.583  Sum_probs=29.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||+|||| |..|-+.|+.|...++  ++.++|.+.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            48999999 9999999999999976  788998764

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.66  E-value=0.091  Score=49.13  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|+|+|.+|+++|..|+++|.+|++.|+..
T Consensus         5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999999999999998754

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=93.64  E-value=0.11  Score=48.38  Aligned_cols=36  Identities=25%  Similarity=0.247  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.++|+|+|+|+.|+.+|..++..|.+|+++|..+.
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~  236 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPI  236 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            457999999999999999999999999999987653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.60  E-value=0.12  Score=45.98  Aligned_cols=35  Identities=29%  Similarity=0.375  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|..|..++..|.+.|.+|+++++..
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35799999999999999999999999999998874

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=93.57  E-value=0.11  Score=43.87  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.||| +|..|.+.|..|.+.|++|+++.+++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~   34 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL   34 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence            4799997 79999999999999999999998754

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=93.56  E-value=0.097  Score=46.70  Aligned_cols=35  Identities=31%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      -++|+|||||..|-..|+.++..|++|+++|.+..
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~   37 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPE   37 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHH
Confidence            47899999999999999999998899999998743

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=93.50  E-value=0.11  Score=49.51  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus       180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  212 (484)
T TIGR01438       180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  212 (484)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence            368999999999999999999999999999974

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.49  E-value=0.16  Score=42.52  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|+|.|-.|..+|..|.+.|++|++.|.+
T Consensus        27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            4478999999999999999999999999998865

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02602 lactate dehydrogenase

Probab=93.46  E-value=0.14  Score=46.60  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||+|||+|..|-+.|+.|...++  ++.++|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            699999999999999999999886  789999754

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=93.44  E-value=0.12  Score=49.07  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHH---HCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELL---DQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~---~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..+.   +.|.+|+|+|+.+.+.
T Consensus       187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il  226 (486)
T TIGR01423       187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL  226 (486)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence            478999999999999997554   3499999999988754

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.43  E-value=0.1  Score=49.53  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~   62 (260)
                      ++|+|||+|..|+.+|..|+++|  ++|+.+|.+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~   35 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS   35 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence            57999999999999999999985  789988864

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=93.40  E-value=0.13  Score=45.36  Aligned_cols=34  Identities=32%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|||+|-+|-++++.|++.|. +++|+++..
T Consensus       127 ~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~  161 (284)
T PRK12549        127 LERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP  161 (284)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            3789999999999999999999997 799998753

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.37  E-value=0.11  Score=48.93  Aligned_cols=32  Identities=31%  Similarity=0.499  Sum_probs=29.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|.|.+|.++|..|. +|.+|++.|..
T Consensus         6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~   37 (454)
T PRK01368          6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL   37 (454)
T ss_pred             CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence            478999999999999999998 59999999954

>PTZ00052 thioredoxin reductase; Provisional

Probab=93.36  E-value=0.12  Score=49.32  Aligned_cols=33  Identities=30%  Similarity=0.338  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus       182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~  214 (499)
T PTZ00052        182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS  214 (499)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence            368999999999999999999999999999874

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=93.35  E-value=0.097  Score=46.16  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            58999999999999999999999999999875

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.33  E-value=0.15  Score=45.73  Aligned_cols=35  Identities=31%  Similarity=0.634  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +..||+|||+|..|-++|+.|...|.  ++.++|.+.
T Consensus         2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            45799999999999999999999886  788998754

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.32  E-value=0.13  Score=45.89  Aligned_cols=34  Identities=41%  Similarity=0.518  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|.+.|+.|+..|  .++.+++++..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~   36 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE   36 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence            37999999999999999999999  48999998654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.24  E-value=0.14  Score=45.59  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +||+|||+|..|.+.|+.++..|+ ++.++|.+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            689999999999999999999876 999999754

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=93.22  E-value=0.15  Score=50.80  Aligned_cols=36  Identities=31%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~   64 (260)
                      +.++|+|||||..|...|..++ +.|++|+++|.++.
T Consensus       303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~  339 (699)
T TIGR02440       303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ  339 (699)
T ss_pred             cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4478999999999999999988 58999999998753

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.12  E-value=0.14  Score=47.21  Aligned_cols=32  Identities=38%  Similarity=0.551  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~   62 (260)
                      ++|+|||+|..|.++|..|+++| .+|+|.+|.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs   34 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS   34 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence            68999999999999999999999 899999987

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=93.11  E-value=0.13  Score=51.51  Aligned_cols=36  Identities=28%  Similarity=0.454  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +-++|.|||||..|...|+.++..|++|+++|.++.
T Consensus       334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~  369 (737)
T TIGR02441       334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPA  369 (737)
T ss_pred             cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHH
Confidence            447899999999999999999999999999997653

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.10  E-value=0.15  Score=48.39  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|.|+|.|.+|+++|..|.++|.+|++.|+.
T Consensus        15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            467999999999999999999999999999974

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.07  E-value=0.17  Score=45.55  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      ++|+|||||..|.+.|+.++..|+ ++.++|.+..
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            689999999999999999999996 9999997654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=93.03  E-value=0.12  Score=46.21  Aligned_cols=34  Identities=29%  Similarity=0.491  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+|+|..|...|++|++.|.+|+++=|.++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~   34 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR   34 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence            5899999999999999999999999988877664

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=92.98  E-value=0.14  Score=45.26  Aligned_cols=35  Identities=40%  Similarity=0.693  Sum_probs=32.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+|.+||-|..|...|.+|.++|++|+++++....
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k   35 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK   35 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence            47999999999999999999999999999988654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.92  E-value=0.11  Score=48.93  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHH-HHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~-aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||.|-+|++ +|..|.++|++|++.|....
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            57999999999999 59999999999999997543

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.92  E-value=0.16  Score=50.57  Aligned_cols=36  Identities=31%  Similarity=0.383  Sum_probs=31.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~   64 (260)
                      +-++|+|||||..|...|..++ ..|++|+++|.++.
T Consensus       308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~  344 (708)
T PRK11154        308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ  344 (708)
T ss_pred             cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence            4478999999999999999998 88999999998643

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.89  E-value=0.17  Score=48.23  Aligned_cols=34  Identities=21%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||.|.+|+++|..|.++|++|++.|...
T Consensus         7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          7 GPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            4679999999999999999999999999999654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=92.86  E-value=0.19  Score=42.05  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ....+|+|||+|.-|...|..|++.|+ +++++|..
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            456899999999999999999999998 69999875

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.84  E-value=0.16  Score=48.58  Aligned_cols=35  Identities=34%  Similarity=0.568  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45799999999999999999999999999998765

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.68  E-value=0.31  Score=34.73  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYES   61 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~   61 (260)
                      ..++++|+|+|..|..++..|.+. +.++.++++
T Consensus        22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            457899999999999999999998 678999987

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=92.66  E-value=0.16  Score=44.93  Aligned_cols=35  Identities=26%  Similarity=0.281  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|.+.|..|+..|.+|++++++..
T Consensus       151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~  185 (287)
T TIGR02853       151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSA  185 (287)
T ss_pred             CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            47899999999999999999999999999998653

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=92.60  E-value=0.17  Score=44.95  Aligned_cols=33  Identities=33%  Similarity=0.654  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+|.|||.|..|.+.|..|.+.|++|++++++.
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            379999999999999999999999999998864

>PLN02712 arogenate dehydrogenase

Probab=92.55  E-value=0.24  Score=48.99  Aligned_cols=59  Identities=25%  Similarity=0.277  Sum_probs=44.8

Q ss_pred             cccccCCCCCCCCCCCCCCCCCC-CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958            5 LLLVSGSTEDPKCLFPPEPEHYG-GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +...+-...+|..+.....+... ...++|.|||.|..|-+.|..|.+.|++|.++++..
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~  402 (667)
T PLN02712        343 DMMRFQGVAQKYEYNAQVSGCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSD  402 (667)
T ss_pred             hhhhhhcccCCCCccchhhhccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECCh
Confidence            33444556677776665544333 345899999999999999999999999999998864

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=92.49  E-value=0.14  Score=43.61  Aligned_cols=37  Identities=27%  Similarity=0.259  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.+.|.|||||..|...|.-.+..|++|.+++++...
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~a   46 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDA   46 (298)
T ss_pred             cccceEEEcccccchhHHHHHHhcCCceEEecCCHHH
Confidence            4578999999999999999999999999999987653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=92.48  E-value=0.23  Score=42.33  Aligned_cols=34  Identities=35%  Similarity=0.582  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc---EEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE---VDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~---v~v~E~~~   63 (260)
                      ..+|+|+|||-+|..+|..|.+.|..   +.|+++..
T Consensus        25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            46899999999999999999999974   88999873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=92.40  E-value=0.21  Score=47.04  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .+..+|+|||||.||.-||...++.|-+.+++-.+
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            56789999999999999999999999888887653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=92.37  E-value=0.22  Score=37.21  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=28.4

Q ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        33 v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      |+|+|.|..|...+..|.+.+.+|+++|++..
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcH
Confidence            68999999999999999998889999998764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=92.32  E-value=0.21  Score=47.00  Aligned_cols=39  Identities=26%  Similarity=0.264  Sum_probs=34.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ...++|+|||+|.+|.-.|-.|.+.|.+|+++-|.+.-.
T Consensus       173 ~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~  211 (443)
T COG2072         173 LRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHI  211 (443)
T ss_pred             cCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCce
Confidence            345899999999999999999999999999999877543

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.32  E-value=0.19  Score=46.82  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+|.|||-|.+|.++|..|.++|++|+++|.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3689999999999999999999999999999754

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.23  E-value=0.28  Score=44.03  Aligned_cols=35  Identities=34%  Similarity=0.450  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~   64 (260)
                      .+||+|||||..|-+.|+.|...|+  ++.++|.+..
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~   42 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE   42 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence            3699999999999999999999997  7999997543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=92.20  E-value=0.24  Score=43.26  Aligned_cols=34  Identities=35%  Similarity=0.376  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|+|+|-+|.+.++.|++.|.+|+++.+..
T Consensus       117 ~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~  150 (270)
T TIGR00507       117 NQRVLIIGAGGAARAVALPLLKADCNVIIANRTV  150 (270)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999998753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PLN02712 arogenate dehydrogenase

Probab=92.18  E-value=0.3  Score=48.36  Aligned_cols=36  Identities=39%  Similarity=0.447  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+++|.|||.|..|-+.|..|.+.|++|+++++++
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   85 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSD   85 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            445789999999999999999999999999998763

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.17  E-value=0.2  Score=44.19  Aligned_cols=33  Identities=30%  Similarity=0.609  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||.|..|...|..|++.|++|++++++.
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            579999999999999999999999999998764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=92.17  E-value=0.22  Score=40.20  Aligned_cols=35  Identities=29%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++++|+|=|..|-..|.+|+..|.+|+|.|..+.
T Consensus        23 Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi   57 (162)
T PF00670_consen   23 GKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPI   57 (162)
T ss_dssp             TSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHH
T ss_pred             CCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChH
Confidence            47899999999999999999999999999998763

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=92.10  E-value=0.26  Score=43.62  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ....+|-.||=|.-|-..+..|.+.||+|+|+++...
T Consensus        33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~   69 (327)
T KOG0409|consen   33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKD   69 (327)
T ss_pred             cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHH
Confidence            3468899999999999999999999999999997643

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=92.10  E-value=0.22  Score=44.19  Aligned_cols=34  Identities=24%  Similarity=0.448  Sum_probs=30.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||.|..|.+.|..|.+.|++|.+++++..
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~   34 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD   34 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            3799999999999999999999999999988753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=92.08  E-value=0.2  Score=46.80  Aligned_cols=34  Identities=26%  Similarity=0.506  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+|+|..|...|..|.++|++|+++|+++.
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~   34 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEE   34 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            4799999999999999999999999999998543

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.07  E-value=0.18  Score=47.38  Aligned_cols=33  Identities=33%  Similarity=0.498  Sum_probs=30.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|.|||.|-+|+++|..|.++|++|++.|..
T Consensus         9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390          9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            358999999999999999999999999999965

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=92.05  E-value=0.33  Score=38.21  Aligned_cols=34  Identities=32%  Similarity=0.356  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.+..|.+.| .+|++++++.
T Consensus        19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~   53 (155)
T cd01065          19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL   53 (155)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            478999999999999999999986 7899998754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=92.01  E-value=0.093  Score=40.70  Aligned_cols=34  Identities=41%  Similarity=0.508  Sum_probs=26.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      +.++.+|.|||+|-.|-+.|..|.+.|+.|.-+.
T Consensus         7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~   40 (127)
T PF10727_consen    7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVY   40 (127)
T ss_dssp             -----EEEEECTSCCCCHHHHHHHHTTSEEEEES
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            4567899999999999999999999999887654

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.00  E-value=0.25  Score=45.89  Aligned_cols=35  Identities=23%  Similarity=0.274  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||.|..|...|..++..|.+|+++|..+
T Consensus       194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            45799999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=91.97  E-value=0.29  Score=43.30  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~   63 (260)
                      .++|+|+|||-+|.++|+.|++.|.+ |+|+.|+.
T Consensus       126 ~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        126 GKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46799999999999999999999986 99998753

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=91.96  E-value=0.25  Score=46.06  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=30.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHH--------------CCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD--------------QGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~--------------~G~~v~v~E~~~~~   65 (260)
                      ++|+|||+|..|+-.|..|++              .+.+|+++|+.+.+
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            489999999999999988875              47899999987765

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=91.94  E-value=0.24  Score=46.65  Aligned_cols=34  Identities=29%  Similarity=0.363  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|||+|..|+-+|..|.+.|. +|+++++.+
T Consensus       273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~  307 (457)
T PRK11749        273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG  307 (457)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            4789999999999999999999998 899998754

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.84  E-value=0.23  Score=49.84  Aligned_cols=34  Identities=38%  Similarity=0.441  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~   63 (260)
                      .++|+|||+|..|+-+|..+.+.|.+ |+++++.+
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~  604 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS  604 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence            47899999999999999999999987 99998764

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=91.83  E-value=0.28  Score=35.38  Aligned_cols=33  Identities=45%  Similarity=0.548  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCC---CcEEEE-cccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQG---HEVDIY-ESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G---~~v~v~-E~~~~   64 (260)
                      +|.|||+|-.|.+.+..|.+.|   .+|.+. ++++.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~   37 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE   37 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH
Confidence            6899999999999999999999   888855 76543

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.81  E-value=0.28  Score=38.07  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..+|+|||+|-.|...|..|++.|. +++|+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            3689999999999999999999998 799998643

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.79  E-value=0.23  Score=44.11  Aligned_cols=32  Identities=38%  Similarity=0.558  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|.|||.|..|...|..|.+.|++|+++++..
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~   33 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNP   33 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCH
Confidence            79999999999999999999999999998864

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=91.69  E-value=0.24  Score=45.54  Aligned_cols=34  Identities=32%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+||| .|..|-+.|..|+++|++|+++++++
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            47899999 89999999999999999999999754

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=91.67  E-value=0.14  Score=46.35  Aligned_cols=34  Identities=29%  Similarity=0.459  Sum_probs=28.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+||+|||+|-+|+-||+.|+.-=..|+++|=.+
T Consensus       354 gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~  387 (520)
T COG3634         354 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP  387 (520)
T ss_pred             CceEEEECCCcchHHHHHhHHhhhheeeeeecch
Confidence            4899999999999999999985445899998443

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.49  E-value=0.31  Score=45.50  Aligned_cols=36  Identities=25%  Similarity=0.240  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|+|.|..|..+|..|+..|.+|+++|..+.
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~  246 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPI  246 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCch
Confidence            457899999999999999999999999999997653

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.44  E-value=0.43  Score=43.63  Aligned_cols=34  Identities=29%  Similarity=0.434  Sum_probs=30.9

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|.|| |..|...+..|.++|++|+++.+.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~   54 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK   54 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence            4578999998 999999999999999999999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=91.42  E-value=0.38  Score=39.68  Aligned_cols=33  Identities=24%  Similarity=0.353  Sum_probs=29.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|| |..|..++..|.+.|.+|+++.++
T Consensus        28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            478999997 999999999999999999999765

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.40  E-value=0.26  Score=46.25  Aligned_cols=33  Identities=27%  Similarity=0.353  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      --|+|||.|-+|+++|..|.++|++|++.|...
T Consensus         7 ~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          7 GLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            358999999999999999999999999999754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=91.30  E-value=0.2  Score=44.61  Aligned_cols=34  Identities=26%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .-+|+|||+|..|.-+|.-....|-+|+|+|.+.
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~  201 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI  201 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence            4689999999999999999999999999999983

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=91.19  E-value=0.37  Score=42.35  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      .++|+|+|+|-+|.++++.|.+.| .+|+|+.|+.
T Consensus       123 ~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~  157 (278)
T PRK00258        123 GKRILILGAGGAARAVILPLLDLGVAEITIVNRTV  157 (278)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            468999999999999999999999 6899998753

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=91.19  E-value=0.34  Score=43.33  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=28.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ||+|||+|..|-++|+.|..+++  ++.++|.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            68999999999999999999887  799999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=91.17  E-value=0.32  Score=43.14  Aligned_cols=32  Identities=38%  Similarity=0.557  Sum_probs=30.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|.|||.|..|...|..|.+.|++|++++++.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~   33 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ   33 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999864

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=91.11  E-value=0.32  Score=43.27  Aligned_cols=33  Identities=33%  Similarity=0.378  Sum_probs=29.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .+|+|||+|..|.+.|..|.+.|+  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            689999999999999999999985  899998764

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=91.11  E-value=0.28  Score=43.53  Aligned_cols=32  Identities=28%  Similarity=0.279  Sum_probs=28.5

Q ss_pred             EEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           33 VAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        33 v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      |+|||||..|...|+.|+.+|+ +|+++|.+..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~   33 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEG   33 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCc
Confidence            6899999999999999999887 9999998653

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.07  E-value=0.31  Score=45.56  Aligned_cols=34  Identities=35%  Similarity=0.507  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||.|.+|++++..|+++|++|++.|...
T Consensus         6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          6 GKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3679999999999999999999999999999654

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=91.04  E-value=0.34  Score=40.06  Aligned_cols=33  Identities=45%  Similarity=0.634  Sum_probs=29.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+|||| |.+|-..+..+.++|++||.+=|++
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~   34 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNA   34 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeCh
Confidence            58999998 8999999999999999999987764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=91.03  E-value=0.34  Score=45.30  Aligned_cols=36  Identities=31%  Similarity=0.380  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|+|+|..|...|..|.+.|++|+++|++..
T Consensus       230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~  265 (453)
T PRK09496        230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPE  265 (453)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            357899999999999999999999999999998754

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=90.98  E-value=0.23  Score=44.55  Aligned_cols=35  Identities=29%  Similarity=0.554  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~-~v~v~E~~~   63 (260)
                      ..++|+|||+|.+|+++|..+.++ |. +|-|+|-.+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            348999999999999999998876 43 888998764

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=90.94  E-value=1  Score=42.66  Aligned_cols=91  Identities=45%  Similarity=0.714  Sum_probs=67.5

Q ss_pred             hhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHH----------------------hhhccCCCCCCCCCCCCCCCCcc
Q 024958          137 DYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVAR----------------------QSLYRGGPGKVPLRTDQKTPVKN  194 (260)
Q Consensus       137 ~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~----------------------~p~~p~~pG~~~F~G~~~hs~~~  194 (260)
                      +|.+.+....++.+..++..+.....+++...+..                      ++.+-..||+..+++.+.||+.+
T Consensus       350 ~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~~vP~~~~a~~~~~~i~~~q~~~~~~pgs~~~rP~~~Tpv~N  429 (485)
T COG3349         350 DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYELVPSLAEAKLKSSVLVNQQSLYGLAPGSYHYRPEQKTPIPN  429 (485)
T ss_pred             hhccccchhhhhhhhcccccccccchhhHHHHHHHHhhhcCCchhcccccccceeccccccccCCCccccCCCCCCCccc
Confidence            66777665556665555555544444443333322                      44455668999999999999999


Q ss_pred             ccccccccccccccchhHHHHhHHHHHHHHHHh
Q 024958          195 LFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA  227 (260)
Q Consensus       195 yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~  227 (260)
                      +..+++|....+.-.|+|+-.||..+|..+...
T Consensus       430 ~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~  462 (485)
T COG3349         430 LLLAGDYTKQPYLGSMEGATLSGLLAANAILDN  462 (485)
T ss_pred             hhhccceeecCCcCccchhhhhHHHHHHHHHHh
Confidence            999999998889999999999999999888754

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.92  E-value=0.4  Score=43.11  Aligned_cols=34  Identities=29%  Similarity=0.561  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      .++|+|||||..|-+.|+.|...| .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            468999999999999999999998 5888998754

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.85  E-value=0.29  Score=45.40  Aligned_cols=31  Identities=26%  Similarity=0.396  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ++|.|||.|-+|+++|..|. +|.+|++.|..
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            46899999999999999999 99999999954

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=90.84  E-value=0.13  Score=47.09  Aligned_cols=41  Identities=32%  Similarity=0.455  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +++.+|||||..||-.+.--.+.|-+||++|-.+.+||.+-
T Consensus       211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD  251 (506)
T KOG1335|consen  211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD  251 (506)
T ss_pred             cceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence            57899999999999999988999999999999999998743

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=90.78  E-value=0.26  Score=46.68  Aligned_cols=35  Identities=17%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+|.|||.|..|.+.|..|+++|++|+++++....
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~   36 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEK   36 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            47999999999999999999999999999987553

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=90.76  E-value=0.4  Score=42.11  Aligned_cols=33  Identities=30%  Similarity=0.363  Sum_probs=29.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++|+|+|||-++.++++.|.+.|. +++|+.|..
T Consensus       123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  156 (272)
T PRK12550        123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNE  156 (272)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            589999999999999999999997 599998764

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=90.69  E-value=0.31  Score=45.40  Aligned_cols=32  Identities=31%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|.|||.|-+|+++|..|.++|++|++.|...
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~   32 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP   32 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence            58999999999999999999999999999654

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=90.53  E-value=0.45  Score=41.98  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|||||-+|-++++.|.+.|. +++|+.|..
T Consensus       125 ~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~  159 (282)
T TIGR01809       125 GFRGLVIGAGGTSRAAVYALASLGVTDITVINRNP  159 (282)
T ss_pred             CceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            4689999999999999999999997 799997753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=90.50  E-value=0.49  Score=40.93  Aligned_cols=37  Identities=27%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .|..+++|+|||..+...|..+...|++|+|+|-++.
T Consensus        98 ~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964        98 PPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            4668999999999999999999999999999986544

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=90.44  E-value=0.39  Score=40.38  Aligned_cols=30  Identities=43%  Similarity=0.588  Sum_probs=27.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      +.+.|+|+|-.|.+.|.+|++.|++|+|--
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs   31 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGS   31 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEec
Confidence            578999999999999999999999999873

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.41  E-value=0.38  Score=43.88  Aligned_cols=34  Identities=32%  Similarity=0.352  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||.|..|-+.|..|++.|+++.+++.+..
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~   34 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPS   34 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            3699999999999999999999999999987654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=90.36  E-value=0.41  Score=42.44  Aligned_cols=32  Identities=28%  Similarity=0.566  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|.|||.|..|...|..|.+.|++|+++++.+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~   33 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGP   33 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            69999999999999999999999999998754

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=90.30  E-value=0.47  Score=43.01  Aligned_cols=36  Identities=28%  Similarity=0.368  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ....+|+|||+|-.|...|..|++.|+ +++|+|...
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            446789999999999999999999998 889998753

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=90.18  E-value=0.46  Score=42.50  Aligned_cols=35  Identities=34%  Similarity=0.400  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      +..+|+|||+|..|..++..|...| .+|+++++..
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~  212 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY  212 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            4688999999999999999998876 6899998764

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=90.05  E-value=0.49  Score=45.57  Aligned_cols=33  Identities=30%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|+|-+|.++++.|+++|.+|+++.+.
T Consensus       379 ~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~  411 (529)
T PLN02520        379 GKLFVVIGAGGAGKALAYGAKEKGARVVIANRT  411 (529)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCC
Confidence            468999999999999999999999999999764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=90.05  E-value=0.5  Score=41.77  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|+|||-++-++++.|.+.|. +++|+.|..
T Consensus       127 ~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~  161 (283)
T PRK14027        127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence            4689999999999999999999996 788998754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=89.99  E-value=0.33  Score=45.93  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|.+|+-.|..|.+.+.+|+++.+..
T Consensus       204 gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~  237 (461)
T PLN02172        204 NEVVVVIGNFASGADISRDIAKVAKEVHIASRAS  237 (461)
T ss_pred             CCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence            4789999999999999999999999999998754

>PLN02494 adenosylhomocysteinase

Probab=89.98  E-value=0.49  Score=44.70  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.|+|+|.|..|...|.+++..|.+|+++|..+
T Consensus       254 GKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        254 GKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5789999999999999999999999999999765

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=89.97  E-value=0.49  Score=44.22  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ...+|+|||+|..|..++..|...|. +|+++++..
T Consensus       181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~  216 (423)
T PRK00045        181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTL  216 (423)
T ss_pred             cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            45789999999999999999999997 788998864

>PRK08017 oxidoreductase; Provisional

Probab=89.88  E-value=0.49  Score=40.19  Aligned_cols=33  Identities=27%  Similarity=0.285  Sum_probs=29.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.|+|+|| |..|.+.|..|.++|++|+++.++.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~   36 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKP   36 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            46999998 9999999999999999999987754

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=89.87  E-value=0.51  Score=44.05  Aligned_cols=35  Identities=31%  Similarity=0.343  Sum_probs=31.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      ...+|+|||+|..|..++..|...| .+|+++.+..
T Consensus       179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~  214 (417)
T TIGR01035       179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTY  214 (417)
T ss_pred             cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4578999999999999999999999 6899998754

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK07831 short chain dehydrogenase; Provisional

Probab=89.79  E-value=0.87  Score=38.98  Aligned_cols=36  Identities=28%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             CCCCcEEEECC-C-HHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGA-G-LAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGa-G-~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ...+.++|.|| | -.|.+.|..|+++|++|++.+++.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~   52 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHE   52 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCH
Confidence            34578999997 5 589999999999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
2bxr_A	527	Human Monoamine Oxidase A In Complex With Clorgylin		4e-05
4dsg_A	484	Crystal Structure Of Oxidized Udp-Galactopyranose M		5e-05
2xaf_A	852	Crystal Structure Of Lsd1-Corest In Complex With Pa		7e-05
2z5x_A	513	Crystal Structure Of Human Monoamine Oxidase A With		9e-05
2z5y_A	513	Crystal Structure Of Human Monoamine Oxidase A (G11		9e-05
2v1d_A	730	Structural Basis Of Lsd1-Corest Selectivity In Hist		1e-04
2x0l_A	734	Crystal Structure Of A Neuro-Specific Splicing Vari		1e-04
2dw4_A	660	Crystal Structure Of Human Lsd1 At 2.3 A Resolution		1e-04
2ejr_A	662	Lsd1-Tranylcypromine Complex Length = 662		1e-04
2iw5_A	666	Structural Basis For Corest-dependent Demethylation		1e-04
2hko_A	664	Crystal Structure Of Lsd1 Length = 664		1e-04
2h94_A	664	Crystal Structure And Mechanism Of Human Lysine-Spe		2e-04

>pdb|2BXR|A Chain A, Human Monoamine Oxidase A In Complex With Clorgyline, Crystal Form A Length = 527

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 22  EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
           E     G    V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H ++++
Sbjct: 5   EKASIAGHMFDVVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVD 64
Query: 82  MGLHIFFGCYNNLFRLMKKFFMDVYR 107
           +G        N + RL K+  ++ Y+
Sbjct: 65  VGGAYVGPTQNRILRLSKELGIETYK 90

>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase Length = 484

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           K+ IIGAG  G+  AV L + G++   +YE     GG   SF+D++G   ++G H+ F  
Sbjct: 11  KIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSH 70
Query: 91  YNNLFRLMKKFFMDVYRQLRQALGFLLR 118
           Y        ++F DV     Q    L R
Sbjct: 71  Y--------QYFDDVMDWAVQGWNVLQR 90

>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine Length = 852

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 280 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 337
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 338 GGNPMAVVSK 347

>pdb|2Z5X|A Chain A, Crystal Structure Of Human Monoamine Oxidase A With Harmine Length = 513

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H +++++G        N
Sbjct: 5   VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93  NLFRLMKKFFMDVYR 107
            + RL K+  ++ Y+
Sbjct: 65  RILRLSKELGIETYK 79

>pdb|2Z5Y|A Chain A, Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine Length = 513

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 43/75 (57%)
Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IG G++G+S A  L + G  V + E+R  +GG+  +  ++H +++++G        N
Sbjct: 5   VVVIGGGISGLSAAKLLTEYGVSVLVLEARDRVGGRTYTIRNEHVDYVDVGGAYVGPTQN 64
Query: 93  NLFRLMKKFFMDVYR 107
            + RL K+  ++ Y+
Sbjct: 65  RILRLSKELGIETYK 79

>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3 Recognition Length = 730

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 216 GGNPMAVVSK 225

>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of Human Histone Lysine Demethylase Lsd1 Length = 734

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 158 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 215
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 216 GGNPMAVVSK 225

>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution Length = 660

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex Length = 662

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of Nucleosomes By The Human Lsd1 Histone Demethylase Length = 666

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 110 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 167
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 168 GGNPMAVVSK 177

>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1 Length = 664

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific Demethylase-1 Length = 664

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGC 90
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  + GN++ ++G  +  G 
Sbjct: 109 KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF--RKGNYVADLGAMVVTGL 166
Query: 91  YNNLFRLMKK 100
             N   ++ K
Sbjct: 167 GGNPMAVVSK 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-20
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-17
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	2e-16
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	4e-16
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	4e-15
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	1e-14
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	3e-14
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	3e-14
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	2e-13
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	5e-13
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	1e-12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	3e-12
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	3e-12
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	8e-12
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	8e-12
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	9e-12
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	1e-11
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	2e-11
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	2e-11
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	6e-11
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	6e-11
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	8e-11
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	1e-10
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	2e-10
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	2e-10
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	8e-10
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-09
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	1e-09
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	1e-09
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	3e-09
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	3e-09
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	1e-08
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	4e-08
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	4e-08
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	6e-08
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	6e-08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	1e-07
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	5e-07
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	9e-07
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	1e-06
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	2e-06
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	2e-06
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	5e-06
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	5e-06
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	5e-06
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	7e-06
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	9e-06
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	1e-05
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	2e-05
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	2e-05
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	2e-05
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	3e-05
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	3e-05
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	4e-05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	4e-05
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	9e-05
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	9e-05
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	1e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	2e-04
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	2e-04
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	4e-04
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	5e-04
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	5e-04
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	5e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	5e-04
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	8e-04
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	8e-04

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 88.4 bits (219), Expect = 2e-20
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++AIIGAG AG++  + L   G H+  I E    +GGK  S  + HG   EMG  +    
Sbjct: 8   RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHS-PNYHGRRYEMGAIMGVPS 66

Query: 91  YNNLFRLMKKF 101
           Y+ +  +M + 
Sbjct: 67  YDTIQEIMDRT 77

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 78.8 bits (193), Expect = 6e-17
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 1/74 (1%)

Query: 30  KLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
            + V +IGAG  G+  A  L    G    I +S    GG   + +   G   ++G H+ F
Sbjct: 10  SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF 69

Query: 89  GCYNNLFRLMKKFF 102
             Y      + +  
Sbjct: 70  SHYKYFDDCLDEAL 83

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++  ++GAGL G+     L   GHE+ + E  + IGG+  +     G  +  G       
Sbjct: 1   MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNL-PYKGFQLSTGALHMIPH 59

Query: 91  Y--NNLFRLMKKFFMDVYRQLR 110
                L  L++   +    ++ 
Sbjct: 60  GEDGPLAHLLRI--LGAKVEIV 79

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 76.4 bits (187), Expect = 4e-16
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
             K+ IIGAG  G+  AV L + G++   +YE     GG   SF+D++G   ++G H+ F
Sbjct: 9   TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIF 68

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQAL 113
             Y     +M           R++ 
Sbjct: 69  SHYQYFDDVMDWAVQGWNVLQRESW 93

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 73.6 bits (181), Expect = 4e-15
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            VAI+GAG +G++ A  L   G  V + E+R  +GG+  +     G  +E+G        
Sbjct: 7   DVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWT-DTIDGAVLEIGGQWVSPDQ 65

Query: 92  NNLFRLMKKFFMDVYRQLR 110
             L  L+ +  +  + + R
Sbjct: 66  TALISLLDELGLKTFERYR 84

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* Length = 498

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 11/98 (11%)

Query: 15  PKCLFPPEPEHY----------GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
            +C    + E +                V I+GAG+AG+S A  L   GH+V + E+   
Sbjct: 8   AECFQENDYEEFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 67

Query: 65  IGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101
            GG+V ++  ++ G +  +G       +  +   ++KF
Sbjct: 68  PGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF 105

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 70.6 bits (172), Expect = 3e-14
 Identities = 30/105 (28%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 7   LVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG 66
           L S  T +         E          I+GAG AG   A  L   G  V I + R  IG
Sbjct: 6   LPSAVTNERTEQTNTTNEQQESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG 65

Query: 67  GKVGSFIDKHGNHI-EMGLHIFFGCYNNLFRLMKKFFMDVYRQLR 110
           G      D  G  I   G HIF     ++F  + +F      Q R
Sbjct: 66  GNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRFTEWRPYQHR 110

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 20/77 (25%), Positives = 41/77 (53%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G        
Sbjct: 6   DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQ 65

Query: 92  NNLFRLMKKFFMDVYRQ 108
           N + RL K+  ++ Y+ 
Sbjct: 66  NRILRLAKELGLETYKV 82

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS--FIDKHGNHIEMGLHIFFGC 90
             ++G G +G+  A +L + G +V + E    +GG+  S    +  G  +E+G       
Sbjct: 4   AIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRK 63

Query: 91  YNN-LFRLMKKFFMDVYRQ 108
           ++  L   + ++ +     
Sbjct: 64  HHPRLAAELDRYGIPTAAA 82

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* Length = 384

 Score = 67.0 bits (163), Expect = 5e-13
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHI-EMGLHIF 87
             K+ I+GAG +G     +L ++GH+V I + R  IGG      D +    +   G HIF
Sbjct: 3   SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIF 62

Query: 88  FGCYNNLFRLMKKFFMDVYRQLR 110
                 ++  + K    +    R
Sbjct: 63  HTDNETVWNYVNKHAEMMPYVNR 85

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* Length = 516

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
            K KV IIGAG+AG+  A  L   G  +  + E+R  +GG++ +     G   ++G    
Sbjct: 7   AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWH 66

Query: 88  FGCYNN-LFRLMKKFFMDVYRQ 108
                N LF    +  ++  R 
Sbjct: 67  HDTLTNPLFLEEAQLSLNDGRT 88

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 Length = 367

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 18/70 (25%), Positives = 29/70 (41%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
              I+G+GL G   A EL     +V + E R+ IGG   +   +     + G HIF    
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 92  NNLFRLMKKF 101
             ++  +   
Sbjct: 63  KYIWDYVNDL 72

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* Length = 495

 Score = 65.0 bits (158), Expect = 3e-12
 Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 3/147 (2%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
                V +IG G  G++   +L   G +  + E+R  IGG+  S  +  G   EMG    
Sbjct: 37  DGPWDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWS-SNIDGYPYEMGGTWV 95

Query: 88  FGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPE--DYYGEGQGS 145
               ++++R + ++ M             +       +      +T     +        
Sbjct: 96  HWHQSHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDELLRSALHK 155

Query: 146 LLQCVLTPGNPYMPLPNDEIIRRVARQ 172
                 T G   +P P+D       R+
Sbjct: 156 FTNVDGTNGRTVLPFPHDMFYVPEFRK 182

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score = 63.6 bits (154), Expect = 8e-12
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH 79
          P   E       +VA+IGAG++G++ A +L   G  V ++E+    GGK+ S   + G  
Sbjct: 3  PSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSV-SQDGLI 61

Query: 80 IEMGLHIFFGCYNNLFRLMK 99
           + G +       ++  L+ 
Sbjct: 62 WDEGANTMTESEGDVTFLID 81

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 63.5 bits (154), Expect = 8e-12
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 6/80 (7%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH 79
           P           VA++G G++G++ A  L  +G +  + ES + +GG VG+     G  
Sbjct: 11 MPRTTGM-----NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH-ALAGYL 64

Query: 80 IEMGLHIFFGCYNNLFRLMK 99
          +E G + F         L  
Sbjct: 65 VEQGPNSFLDREPATRALAA 84

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
          +K  +IGAGL G+ +A  L   GHEV+++E     GG+  +     G  +  G       
Sbjct: 1  MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNL-SYKGFQLSSGAFHMLPN 59

Query: 91 -YNNLFRLM 98
                   
Sbjct: 60 GPGGPLACF 68

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* Length = 489

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 15/38 (39%), Positives = 25/38 (65%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           V ++G G AG+ +A EL   G++V + E+R+  GG+V
Sbjct: 13 SVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRV 50

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} Length = 376

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 29/215 (13%), Positives = 65/215 (30%), Gaps = 10/215 (4%)

Query: 28  GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKVGSF---------IDKHG 77
           GP  ++ I+GAG+AG+     L   GH+V I E+ +  +GG++ +F              
Sbjct: 42  GPPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPA 101

Query: 78  NHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPED 137
            + E G       +     L+ K  +         +       DA        +    + 
Sbjct: 102 QYAEAGAMRLPSFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKT 161

Query: 138 YYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFL 197
           +         +      + ++    +++ R            G      + +  V ++  
Sbjct: 162 WTNGAPSPEFKEPDKRNHTWIRTNREQVRRAQYATDPSSINEGFHLTGCETRLTVSDMVN 221

Query: 198 AGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELV 232
                 +DY    +       +          ++V
Sbjct: 222 QALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVV 256

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A Length = 662

 Score = 62.6 bits (151), Expect = 2e-11
 Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 2/80 (2%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
              KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K     ++G  +  
Sbjct: 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKGNYVADLGAMVVT 164

Query: 89  GCYNN-LFRLMKKFFMDVYR 107
           G   N +  + K+  M++ +
Sbjct: 165 GLGGNPMAVVSKQVNMELAK 184

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* Length = 379

 Score = 60.8 bits (148), Expect = 6e-11
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
          G   +  + G G AG++ A+ L   G +V ++E  S +    G+ I
Sbjct: 9  GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA-FGAGI 53

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score = 61.2 bits (148), Expect = 6e-11
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 3/70 (4%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
          ++ I+G G+ G++ A           + + E+   +GGKV ++  + G  IE G   +  
Sbjct: 6  RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATY-REDGFTIERGPDSYVA 64

Query: 90 CYNNLFRLMK 99
            + L  L++
Sbjct: 65 RKHILTDLIE 74

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* Length = 407

 Score = 60.4 bits (147), Expect = 8e-11
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI 73
            +K  +IGAG+ G+S AV L   G + D+YE+   I   VG+ I
Sbjct: 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKP-VGAAI 65

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 17  CLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKH 76
                +P        KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K 
Sbjct: 266 IYKRIKPLPTK-KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKG 323

Query: 77  GNHIEMGLHIFFGCYNN-LFRLMKKFFMDVYR 107
               ++G  +  G   N +  + K+  M++ +
Sbjct: 324 NYVADLGAMVVTGLGGNPMAVVSKQVNMELAK 355

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDK-HGNHIEM-GLHI 86
           +  + ++G+G  G++ A  +  Q    V + E R  IGG   S  +   G  +   G H+
Sbjct: 7   RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHL 66

Query: 87  FFGCYNNLFRLMKKF 101
           F      ++  +++F
Sbjct: 67  FHTSNKRVWDYVRQF 81

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 Length = 397

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
              ++A++G  ++G++ A+ L D G +VD+YE
Sbjct: 3  PTTDRIAVVGGSISGLTAALMLRDAGVDVDVYE 35

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 7/78 (8%)

Query: 28 GPKLKVAIIGAGLAGMSTAVEL------LDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE 81
            K  V IIG G+ G++ A  +       +   E+ + E+   +GGK+ +   K G  IE
Sbjct: 3  DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTV-KKDGYIIE 61

Query: 82 MGLHIFFGCYNNLFRLMK 99
           G   F     +  +L+K
Sbjct: 62 RGPDSFLERKKSAPQLVK 79

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} Length = 430

 Score = 57.2 bits (137), Expect = 1e-09
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 19 FPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS---FIGGKVGSFIDK 75
                     K ++ I+GAG AG+   + L     +V +Y  R    + G ++ + +  
Sbjct: 11 SSGLVPRGSHMKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRKPDEYSGLRLLNTVAH 70

Query: 76 HGNHIE 81
          +   ++
Sbjct: 71 NAVTVQ 76

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* Length = 472

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           +V ++GAG++G+S A  L + G  ++ I E+   IGG++    +  G ++E+G +   G 
Sbjct: 6   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHK-TNFAGINVELGANWVEGV 64

Query: 91  YNNLFRLMKKF 101
                  +   
Sbjct: 65  NGGKMNPIWPI 75

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* Length = 398

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 1  MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
          MGSS             L P            VAIIG G  G++ A  L   G +V +YE
Sbjct: 1  MGSS----HHHHHHSSGLVPRGSHMNLLSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYE 56

Query: 61 SR-SFIGGKVGSFIDKHGN 78
                    G  +D H  
Sbjct: 57 RDNDREARIFGGTLDLHKG 75

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG 89
           V ++G G++G++ +  L       +V + ES   +GG + S    +G   E+G      
Sbjct: 4  TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRP 63

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* Length = 410

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG 66
          + + I GAG+ G+S A+ L   G  +V + ES S I 
Sbjct: 5  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIR 41

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 52.7 bits (127), Expect = 4e-08
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           E  +   P +          V I+GAG +G   A  L++ G+ V + ++   IGG +
Sbjct: 373 EYRRGWHPEKFRQTKNKD-SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL 428

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 9   SGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGG 67
               +      P + +       K+A++GAG A +S A  L   G+ ++ I+E + ++GG
Sbjct: 166 MNIPQIRNPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGG 225

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
           E  +   P           +V ++GAG +G+  A  L  +G++V + E+   +GG+V
Sbjct: 375 EWRRGWHPERIRAKESDA-RVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRV 430

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 15/38 (39%), Positives = 27/38 (71%)

Query: 30  KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           K  +A++GAG AG++ A+    +GH+V ++++ S IGG
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGG 410

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGG 67
          K+AIIGAG +G+ TA  LL +    +V ++E R   GG
Sbjct: 8  KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG 45

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* Length = 363

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR 62
           + +V ++G+G+ G+S+A+ L  +G+ V I    
Sbjct: 5  SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* Length = 549

 Score = 48.4 bits (116), Expect = 9e-07
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 13 EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          + P+ +        G     V ++GAG+AG+        QG  V  +E+ S +GG
Sbjct: 4  QHPRSVVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGG 58

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* Length = 545

 Score = 48.0 bits (115), Expect = 1e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          P L   +IGAG+ G+  A  +   G +V   E+   +GG
Sbjct: 8  PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGG 46

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 31 LKVAIIGAGLAGMSTAVELL--DQGHEVDIYESRSFIGG 67
           ++ ++G+G AG  TA  LL       VDIYE +    G
Sbjct: 7  PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 16/36 (44%), Positives = 24/36 (66%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            V +IGAG AG++ A EL  +G+EV +Y+    +GG
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGG 159

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 46.1 bits (109), Expect = 5e-06
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 32 KVAIIGAGLAGMSTAVELLD------QGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLH 85
          ++AI+GAG +GM+             +  E+  +E ++  GG   ++  + G   E G  
Sbjct: 4  RIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGG-QWNYTWRTGLD-ENGEP 61

Query: 86 IFFGCYNNLF 95
          +    Y  L+
Sbjct: 62 VHSSMYRYLW 71

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721

 Score = 46.4 bits (108), Expect = 5e-06
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 15/89 (16%)

Query: 14  DPKCLFPPEPEHYGGP-------KLKVAIIGAGLAGMSTAVELL--------DQGHEVDI 58
            P       P     P         ++AI+G G  G++   EL           G +V I
Sbjct: 33  HPDSALVSYPVAAAAPLGRLPAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQI 92

Query: 59  YESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
           YE+           I            + 
Sbjct: 93  YEADPDSFLHDRPGIKAIKVRGLKAGRVS 121

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} Length = 342

 Score = 45.9 bits (107), Expect = 5e-06
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGH---EVDIYESRSFIGGKVGSFIDKHGN 78
          +V I+GAG+ G   A  L  Q      + +++     GG++ +    H  
Sbjct: 3  QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNP 52

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* Length = 542

 Score = 45.6 bits (109), Expect = 7e-06
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +       ++ V ++GAG +G+     L + G  V + E+   +GG
Sbjct: 6  TVDSRRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 53

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* Length = 572

 Score = 45.5 bits (108), Expect = 9e-06
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V IIG+G AG++ AV   D G +V + E     GG
Sbjct: 129 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 163

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 7/45 (15%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGH-------EVDIYESRSFIGG 67
             +AI+G+G +    A  LL            VD+ E      G
Sbjct: 3  PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWG 47

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V ++GAG AG + ++     G  V + +   F GG
Sbjct: 124 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGG 158

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* Length = 351

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES 61
          ++V +IGAG+ G+STA+ + ++ H V     
Sbjct: 1  MRVVVIGAGVIGLSTALCIHERYHSVLQPLD 31

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 23  PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
            E Y      V ++G GL     +  +   G +V   +   + GG+  S       +   
Sbjct: 4   DEEY-----DVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRF 58

Query: 83  GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRT 119
            L           R    + +D+  +   A G L++ 
Sbjct: 59  QLLEGPPETMGRGR---DWNVDLIPKFLMANGQLVKM 92

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           + V +IG G +G+S    L   G    I ++ +  GG
Sbjct: 3  SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGG 40

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} Length = 381

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 31 LKVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSFIDKHGN 78
          +K+ +IGAG AG+  A +L        +DI E ++     +G  +   G 
Sbjct: 1  MKILVIGAGPAGLVFASQLKQARPLWAIDIVE-KNDEQEVLGWGVVLPGR 49

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* Length = 571

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
           V ++G+G AG S A+   D G +V + E    IGG
Sbjct: 129 VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGG 163

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* Length = 540

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGG 67
            +   +IGAG  G+    +L  + G     ++     GG
Sbjct: 7  HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGG 46

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 33  VAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVG 70
           V I+GAG +G+S A  +       +V I ES    GG   
Sbjct: 68  VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344

 Score = 42.1 bits (98), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 33  VAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKVGSF 72
           + I+GAG  G+S A  L  L     + I E+    GG     
Sbjct: 82  IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLG 123

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* Length = 510

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V + G G+AG++ ++E    G +V + E  S  GG
Sbjct: 44 VVVAGYGIAGVAASIEAARAGADVLVLERTSGWGG 78

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 33 VAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGSF 72
          V ++GAG AG+S A E+  +   +V I E     GG     
Sbjct: 42 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLG 82

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* Length = 382

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
               HY     +  +IG G+ G + A  L  +     ++E    +GG
Sbjct: 12 RAMKRHY-----EAVVIGGGIIGSAIAYYLAKENKNTALFE-SGTMGG 53

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A Length = 550

 Score = 40.5 bits (93), Expect = 4e-04
 Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 8/89 (8%)

Query: 21  PEPEHYGGPKLKVAIIGAGLAGMSTAVEL---LDQGHEVDIYESRSF-----IGGKVGSF 72
           P   H  G   K+ I+G G AG   A  L   L    ++ + ++            + + 
Sbjct: 16  PRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTLGVGEATIPNL 75

Query: 73  IDKHGNHIEMGLHIFFGCYNNLFRLMKKF 101
                + + +    +    N  +++  KF
Sbjct: 76  QTAFFDFLGIPEDEWMRECNASYKVAIKF 104

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} Length = 421

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 14/38 (36%), Positives = 19/38 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
          V +IGAG AG   A  +   G +V I E + F    +G
Sbjct: 8  VLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIG 45

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* Length = 397

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
           E Y      V ++G G  G++TA ++ ++GH V + E R     + G 
Sbjct: 2  TESY-----DVVVVGGGPVGLATAWQVAERGHRVLVLE-RHTFFNENGG 44

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} Length = 591

 Score = 40.3 bits (94), Expect = 5e-04
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 5/45 (11%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
                      KVAIIG G AG    + L   GH+V IYE  +F
Sbjct: 18 GSHMTRS-----KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAF 57

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 5/49 (10%)

Query: 22 EPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG 70
           PE +      + +IG G  G + A  +  +GH V + E  +F   ++G
Sbjct: 4  RPEVF-----DLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIG 47

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
              + +IGAG    + A  L  +G  +    SR+
Sbjct: 9  EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRT 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.69
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.64
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.64
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.61
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.53
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	99.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	99.42
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.37
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.33
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.33
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.32
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.32
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.3
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.26
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	99.24
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.24
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.24
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.23
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.22
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.22
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	99.22
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.22
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.21
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.21
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.21
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	99.19
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.17
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.17
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.16
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.15
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.15
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.14
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	99.14
3r9u_A	315	Thioredoxin reductase; structural genomics, center	99.12
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.12
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.1
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	99.07
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.04
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	99.03
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	99.02
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	99.02
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	99.0
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	98.98
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.98
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.96
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.95
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.94
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.92
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.92
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.91
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	98.91
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.9
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	98.89
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.87
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.86
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.86
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.83
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.83
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.82
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.81
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	98.8
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	98.79
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.73
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.69
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.69
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.67
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.65
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	98.63
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.51
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.5
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.49
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.49
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	98.48
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.48
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.48
3dme_A	369	Conserved exported protein; structural genomics, P	98.46
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.46
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	98.45
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.44
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.42
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	98.42
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.41
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.4
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.39
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.38
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.38
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.37
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.37
4dna_A	463	Probable glutathione reductase; structural genomic	98.37
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.36
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.35
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	98.35
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.34
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	98.34
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.34
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.33
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.32
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	98.32
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.3
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.3
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	98.3
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.3
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.29
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.29
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.29
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	98.29
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.28
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.28
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.27
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.27
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	98.26
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.26
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.25
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	98.25
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	98.25
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.25
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	98.24
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.24
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.24
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.24
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.23
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	98.23
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	98.23
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	98.23
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.22
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.22
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.22
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.2
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.2
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.2
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.2
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.2
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.19
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.19
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.19
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.19
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.18
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.18
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.18
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.17
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.16
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.15
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.15
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.14
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	98.14
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.14
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	98.13
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	98.13
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.12
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.11
3atr_A	453	Conserved archaeal protein; saturating double bond	98.1
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	98.09
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	98.09
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.09
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.08
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.06
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.06
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.04
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.01
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	97.98
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	97.98
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.98
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.97
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.96
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.95
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.95
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.95
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.94
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.94
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.92
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.91
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	97.9
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.88
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.85
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.84
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.84
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.83
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	97.82
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.82
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	97.81
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.8
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.79
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.79
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	97.77
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.76
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.75
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.75
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.73
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.72
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.71
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	97.7
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.69
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.67
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.63
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	97.61
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.6
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.54
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	97.53
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.5
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	97.32
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	97.3
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	97.24
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	97.13
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.02
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.96
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.93
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.92
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.82
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.79
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.68
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.64
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.58
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.55
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.52
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.46
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	96.35
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	96.3
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.29
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	96.27
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.26
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.24
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	96.23
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.19
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.16
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.13
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.11
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.09
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.02
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.01
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.99
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.99
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.95
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	95.93
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.92
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	95.88
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.86
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.85
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.82
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.82
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.79
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	95.78
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	95.74
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.72
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.72
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.72
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.72
1ojt_A	482	Surface protein; redox-active center, glycolysis,	95.69
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.68
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.66
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.65
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.63
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.6
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.59
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	95.58
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.51
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.49
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	95.49
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	95.48
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.48
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.43
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	95.41
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.41
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.37
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	95.37
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	95.37
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.37
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.34
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.33
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.28
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.27
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.27
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.25
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.25
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.24
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.23
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.22
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	95.2
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.2
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.17
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	95.15
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	95.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.09
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.09
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.05
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.03
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	95.02
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.02
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.01
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	95.01
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	95.0
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	95.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	94.99
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.98
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	94.96
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.91
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	94.89
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.88
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	94.86
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.85
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.85
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	94.84
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.82
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.82
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.81
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.79
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	94.77
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.75
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.75
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	94.74
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.74
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.72
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	94.72
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.7
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.7
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	94.7
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.7
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	94.68
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.67
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.66
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	94.66
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.65
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.62
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.6
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.58
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.58
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.58
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.58
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.57
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.56
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.48
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	94.47
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.46
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.45
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.45
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.44
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	94.44
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	94.41
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.37
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	94.34
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	94.34
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.33
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.32
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.32
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.32
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	94.31
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.3
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	94.3
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.3
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	94.29
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.28
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.28
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	94.27
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	94.26
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.25
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	94.24
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	94.21
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.1
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.08
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	94.06
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.06
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	94.04
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	94.04
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.01
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	94.0
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	93.97
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.97
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	93.97
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	93.94
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	93.94
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	93.93
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	93.93
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.93
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	93.92
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	93.92
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	93.92
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	93.92
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	93.91
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.88
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	93.85
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.84
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.83
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.82
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	93.79
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.78
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	93.72
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	93.7
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.69
4dna_A	463	Probable glutathione reductase; structural genomic	93.68
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.66
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	93.64
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	93.62
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.61
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	93.61
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.61
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.61
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	93.59
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	93.59
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.57
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.53
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	93.49
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.48
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	93.43
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	93.41
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	93.38
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	93.35
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	93.35
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.33
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	93.3
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	93.29
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.29
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.27
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	93.27
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	93.27
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	93.23
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	93.21
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.14
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.13
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	93.12
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	93.07
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	93.04
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	92.98
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	92.97
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	92.95
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	92.93
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.89
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	92.87
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	92.83
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.81
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	92.79
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	92.76
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.73
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	92.69
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	92.67
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.66
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.62
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	92.6
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	92.54
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	92.54
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.51
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	92.5
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.43
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	92.33
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	91.5
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.22
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	92.21
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	92.16
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	92.01
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	92.01
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	91.99
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	91.93
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	91.88
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	91.87
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	91.83
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	91.82
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	91.82
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	91.8
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	91.8
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	91.79
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	91.74
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	91.71
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	91.68
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	91.68
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	91.65
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	91.64
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	91.6
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	91.49
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	91.39
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	91.34
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	91.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	91.29
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	91.21
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	91.19
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	91.17
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	91.13
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	91.13
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.1
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	91.1
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	91.08
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	91.08
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	91.01
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	91.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	90.99
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	90.95
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	90.85
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	90.84
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.81
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	90.75
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	90.75
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	90.69
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	90.68

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.69  E-value=1.8e-19  Score=171.09  Aligned_cols=187  Identities=14%  Similarity=0.115  Sum_probs=114.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcch-HHHHH---------H
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRL---------M   98 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~-~~~~~---------~   98 (260)
                      ...+|+|||||++|+++|+.|++.|++|+|||+++.+||.|... .++|..+|...+.|...+. ++...         .
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~-~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~   98 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWN-RYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ   98 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-CCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence            34799999999999999999999999999999999999999754 3788888887776654332 11111         0


Q ss_pred             HHHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHH--Hhhhcc
Q 024958           99 KKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVA--RQSLYR  176 (260)
Q Consensus        99 ~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~--~~p~~p  176 (260)
                      .++ .+...++....++.           .+..+...+.-.++......+.+......  ....+.++.+..  ..|.+|
T Consensus        99 ~ei-~~yl~~~~~~~g~~-----------~~i~~~~~V~~i~~~~~~~~w~V~~~~G~--~i~ad~lV~AtG~~s~p~~p  164 (549)
T 4ap3_A           99 PEI-LAYLEHVADRFDLR-----------RDIRFDTRVTSAVLDEEGLRWTVRTDRGD--EVSARFLVVAAGPLSNANTP  164 (549)
T ss_dssp             HHH-HHHHHHHHHHTTCG-----------GGEECSCCEEEEEEETTTTEEEEEETTCC--EEEEEEEEECCCSEEECCCC
T ss_pred             HHH-HHHHHHHHHHcCCC-----------ccEEECCEEEEEEEcCCCCEEEEEECCCC--EEEeCEEEECcCCCCCCCCC
Confidence            111 01111111111110           00011111111111110000111111111  112233333333  478899


Q ss_pred             CCCCCCCCCCCCCCCCcccccc-ccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          177 GGPGKVPLRTDQKTPVKNLFLA-GSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       177 ~~pG~~~F~G~~~hs~~~yr~~-~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ++||++.|.|..+|+..|   + ......+++|+|+|+|.||+|+|.+|++.+++|++
T Consensus       165 ~ipG~~~f~g~~~~~~~~---~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  219 (549)
T 4ap3_A          165 AFDGLDRFTGDIVHTARW---PHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFV  219 (549)
T ss_dssp             CCTTGGGCCSEEEEGGGC---CTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCCCcccCCCceEEeccc---cccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            999999999999998554   3 24455699999999999999999999998887754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.64  E-value=7.3e-19  Score=166.78  Aligned_cols=184  Identities=13%  Similarity=0.045  Sum_probs=108.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchH-------------HH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNN-------------LF   95 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~-------------~~   95 (260)
                      ...+|+|||||++|+++|+.|++.|++|+|||+++.+||.|+.. .++|..+|...+.|...+..             ..
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~-~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~   86 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWN-RYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQ   86 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccC-CCCceeecCchhhcccccCcccccCCCccccCCCH
Confidence            45799999999999999999999999999999999999999744 47888887765554321000             00


Q ss_pred             HHHHHHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHH--Hhh
Q 024958           96 RLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVA--RQS  173 (260)
Q Consensus        96 ~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~--~~p  173 (260)
                      ..+.+.+.+..+++    ++.           .+..+...+.-.++....-.+.+......  ....+.++.+..  ..|
T Consensus        87 ~ei~~yl~~~~~~~----~l~-----------~~i~~~~~V~~~~~~~~~~~w~V~~~~G~--~~~ad~lV~AtG~~s~p  149 (545)
T 3uox_A           87 PEMLRYVNRAADAM----DVR-----------KHYRFNTRVTAARYVENDRLWEVTLDNEE--VVTCRFLISATGPLSAS  149 (545)
T ss_dssp             HHHHHHHHHHHHHH----TCG-----------GGEECSCCEEEEEEEGGGTEEEEEETTTE--EEEEEEEEECCCSCBC-
T ss_pred             HHHHHHHHHHHHHc----CCc-----------CcEEECCEEEEEEEeCCCCEEEEEECCCC--EEEeCEEEECcCCCCCC
Confidence            11111111111111    110           00001111111111110000111110100  112222333333  378


Q ss_pred             hccCCCCCCCCCCCCCCCCcccccccc-------ccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          174 LYRGGPGKVPLRTDQKTPVKNLFLAGS-------YTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       174 ~~p~~pG~~~F~G~~~hs~~~yr~~~~-------y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      .+|++||++.|.|..+|+..|   +..       +...+++|+|+|+|.||+|+|.+|++.+++|++
T Consensus       150 ~~p~ipG~~~f~g~~~h~~~~---~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv  213 (545)
T 3uox_A          150 RMPDIKGIDSFKGESFHSSRW---PTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYV  213 (545)
T ss_dssp             --CCCTTGGGCCSEEEEGGGC---CBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEE
T ss_pred             cCCCCCCccccCCCeEEcccc---cccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEE
Confidence            889999999999999888555   333       556689999999999999999999998877643

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.64  E-value=1.8e-18  Score=163.85  Aligned_cols=186  Identities=12%  Similarity=0.103  Sum_probs=111.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-HCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcch-HHHHH---------H
Q 024958           30 KLKVAIIGAGLAGMSTAVELL-DQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN-NLFRL---------M   98 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~-~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~-~~~~~---------~   98 (260)
                      ..+|+|||||++|+++|+.|+ +.|++|+|||+++.+||.|+.. .++|..+|...+.+...+. +....         .
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~-~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~   86 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWN-RYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQ   86 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHC-CCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccccc-CCCCceecCCcceeeeccccccccCCCCcccCCCH
Confidence            479999999999999999999 8999999999999999999754 3788888887666643322 11110         0


Q ss_pred             HHHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHH--Hhhhcc
Q 024958           99 KKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVA--RQSLYR  176 (260)
Q Consensus        99 ~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~--~~p~~p  176 (260)
                      .++ .+...++....++.           .+..+...+.-.+.......+.+......  ....+.++.+..  ..|.+|
T Consensus        87 ~ei-~~~l~~~~~~~g~~-----------~~i~~~~~V~~i~~~~~~~~~~V~~~~G~--~i~ad~lV~AtG~~s~p~~p  152 (540)
T 3gwf_A           87 PEI-LEYLEDVVDRFDLR-----------RHFKFGTEVTSALYLDDENLWEVTTDHGE--VYRAKYVVNAVGLLSAINFP  152 (540)
T ss_dssp             HHH-HHHHHHHHHHTTCG-----------GGEEESCCEEEEEEETTTTEEEEEETTSC--EEEEEEEEECCCSCCSBCCC
T ss_pred             HHH-HHHHHHHHHHcCCc-----------ceeEeccEEEEEEEeCCCCEEEEEEcCCC--EEEeCEEEECCcccccCCCC
Confidence            011 01111111111110           00001111000111000000111110100  011222222322  378899


Q ss_pred             CCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          177 GGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       177 ~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ++||++.|.|..+|+..|   +......+++|+|+|+|.||+|+|.+|++.+++|++
T Consensus       153 ~ipG~~~f~g~~~~~~~~---~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv  206 (540)
T 3gwf_A          153 NLPGLDTFEGETIHTAAW---PEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTV  206 (540)
T ss_dssp             CCTTGGGCCSEEEEGGGC---CSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             CCCCccccCCCEEEeecC---CCccccccceEEEECCCchHHHHHHHHHhhCCEEEE
Confidence            999999999999998444   334556699999999999999999999998877654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.61  E-value=1.4e-17  Score=157.73  Aligned_cols=187  Identities=13%  Similarity=0.099  Sum_probs=106.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc-chHHHHHH---------H
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC-YNNLFRLM---------K   99 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~-~~~~~~~~---------~   99 (260)
                      ..+|+|||||++||++|+.|+++|++|+|||+++.+||.|+.. .+++..++...+.+... .++....+         .
T Consensus        16 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~-~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~   94 (542)
T 1w4x_A           16 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-RYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQP   94 (542)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccc-CCCceeecccccccccccChhhhhccCcccccCCHH
Confidence            4799999999999999999999999999999999999999743 46777776655444322 12111100         0


Q ss_pred             HHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHH--HhhhccC
Q 024958          100 KFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVA--RQSLYRG  177 (260)
Q Consensus       100 ~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~--~~p~~p~  177 (260)
                      ++ .+....+....++           ..+..+...+.-.+.......+.+......  ....+.++.+..  ..|.+|+
T Consensus        95 ~i-~~yl~~~~~~~~l-----------~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~--~~~ad~vV~AtG~~s~p~~p~  160 (542)
T 1w4x_A           95 EI-LRYINFVADKFDL-----------RSGITFHTTVTAAAFDEATNTWTVDTNHGD--RIRARYLIMASGQLSVPQLPN  160 (542)
T ss_dssp             HH-HHHHHHHHHHTTG-----------GGGEECSCCEEEEEEETTTTEEEEEETTCC--EEEEEEEEECCCSCCCCCCCC
T ss_pred             HH-HHHHHHHHHHcCC-----------CceEEcCcEEEEEEEcCCCCeEEEEECCCC--EEEeCEEEECcCCCCCCCCCC
Confidence            00 0111111111111           000001111111111000000111110000  011122222222  2677899


Q ss_pred             CCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          178 GPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       178 ~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      +||+++|+|..+|+..+-.  ..+...+++|+|+|+|+||.|++.+|++.+++|++
T Consensus       161 i~G~~~f~G~~~hs~~~~~--~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv  214 (542)
T 1w4x_A          161 FPGLKDFAGNLYHTGNWPH--EPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV  214 (542)
T ss_dssp             CTTGGGCCSEEEEGGGCCS--SCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEE
T ss_pred             CCCcccCCCceEECCCCCC--chhccCCCEEEEECCCccHHHHHHHHhhcCceEEE
Confidence            9999999999999844311  22445689999999999999999999998776643

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.53  E-value=9.7e-15  Score=136.12  Aligned_cols=72  Identities=25%  Similarity=0.389  Sum_probs=65.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ..||+|||||++||+||++|++ .|++|+|||+++++||++++....+|+.+|.|+|+++..++++++++.++
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~~v~~l~~e~   82 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYKYFDDCLDEA   82 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBHHHHHHHHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCHHHHHHHHHh
Confidence            4789999999999999999998 49999999999999999998766789999999999998899888887764

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=99.47  E-value=1.8e-15  Score=140.64  Aligned_cols=60  Identities=10%  Similarity=0.010  Sum_probs=52.5

Q ss_pred             HhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          171 RQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       171 ~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ..|.+|++||++.|.|.++|+ ..|+.+..+.  +++|+|+|+|+||.++|.+|++.+++|+.
T Consensus       166 s~p~~p~ipG~~~~~g~~~hs-~~~~~~~~~~--~k~VvVVG~G~sg~eiA~~l~~~g~~V~l  225 (464)
T 2xve_A          166 STPYVPEFEGFEKFGGRILHA-HDFRDALEFK--DKTVLLVGSSYSAEDIGSQCYKYGAKKLI  225 (464)
T ss_dssp             SSBCCCCCBTTTTCCSEEEEG-GGCCCGGGGT--TSEEEEECCSTTHHHHHHHHHHTTCSEEE
T ss_pred             CCCccCCCCCcccCCceEEeh-hhhCCHhHcC--CCEEEEEcCCCCHHHHHHHHHHhCCeEEE
Confidence            368889999999999999998 7787777665  88999999999999999999999988764

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=99.42  E-value=2.1e-15  Score=139.28  Aligned_cols=59  Identities=5%  Similarity=-0.103  Sum_probs=49.9

Q ss_pred             hhhccCCCCCCCC----CCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhh-HHH
Q 024958          172 QSLYRGGPGKVPL----RTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE-LVA  233 (260)
Q Consensus       172 ~p~~p~~pG~~~F----~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~-v~~  233 (260)
                      .|.+|++||++.|    .|.++|+ +.|+.+..|.  ++.|+|+|.|+||.++|.+|++.+++ |+.
T Consensus       178 ~p~~p~i~G~~~~~~~~~g~v~~~-~~~~~~~~~~--~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l  241 (447)
T 2gv8_A          178 VPYIPNIKGLDEYAKAVPGSVLHS-SLFREPELFV--GESVLVVGGASSANDLVRHLTPVAKHPIYQ  241 (447)
T ss_dssp             SBCBCCCBTHHHHHHHSTTSEEEG-GGCCCGGGGT--TCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred             CCCCCCCCChhhhhccCCccEEEe-cccCChhhcC--CCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence            6788889998764    6778888 7888777765  88899999999999999999999887 654

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.37  E-value=1.3e-12  Score=108.66  Aligned_cols=68  Identities=28%  Similarity=0.501  Sum_probs=57.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLM   98 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~   98 (260)
                      +.||+|||||++||++|+.|+++|++|+||||++.+||++++.. ..+..+|.|...+...........
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~~~~~~~~~~~~~~~   69 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGAQYFTARDRRFATAV   69 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSCCCBCCCSHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCccccccCcHHHHHHH
Confidence            36899999999999999999999999999999999999998764 577888999887765554444433

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.33  E-value=6.8e-13  Score=123.53  Aligned_cols=58  Identities=26%  Similarity=0.441  Sum_probs=47.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG   89 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~   89 (260)
                      ++|+|||||++||+||++|+++|++|+|||+++.+||+.+++. .+|+.+|.|++++..
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~~   59 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVITD   59 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeecC
Confidence            6899999999999999999999999999999999999999886 689999999998754

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.33  E-value=1.7e-12  Score=120.80  Aligned_cols=69  Identities=26%  Similarity=0.379  Sum_probs=63.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      +||+|||||++||+||+.|+++|++|+|||+++++||++++.. .+|..+|.|++++++.++++++++++
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~~~~~~l~~  108 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQSHVWREITR  108 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccHHHHHHHHH
Confidence            7999999999999999999999999999999999999999876 57899999999998888887777665

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.32  E-value=7.6e-14  Score=123.35  Aligned_cols=169  Identities=17%  Similarity=0.140  Sum_probs=95.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEE--c--------Ccc---hHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIF--F--------GCY---NNLFR   96 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~--~--------~~~---~~~~~   96 (260)
                      .++|+|||||++|+++|+.|+++|++|+|+|+++.+||.|+...  +...+......+  .        ..+   ..+.+
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAW--HSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA   80 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSC--TTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCC--CCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence            47899999999999999999999999999999999999997421  221111110000  0        001   11111


Q ss_pred             HHHHHHHHHHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHH-HhcCCCCCCCCChhHHHHHHH--Hhh
Q 024958           97 LMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQC-VLTPGNPYMPLPNDEIIRRVA--RQS  173 (260)
Q Consensus        97 ~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~-v~~~~~~~~~~~~~el~~av~--~~p  173 (260)
                      .+.        ++....++...... .        +..    .+.....  +. +.....   ....+.++-+..  ..|
T Consensus        81 ~l~--------~~~~~~~~~~~~~~-~--------v~~----i~~~~~~--~~~v~~~~g---~~~~d~vV~AtG~~~~~  134 (357)
T 4a9w_A           81 YLA--------QYEQKYALPVLRPI-R--------VQR----VSHFGER--LRVVARDGR---QWLARAVISATGTWGEA  134 (357)
T ss_dssp             HHH--------HHHHHTTCCEECSC-C--------EEE----EEEETTE--EEEEETTSC---EEEEEEEEECCCSGGGB
T ss_pred             HHH--------HHHHHcCCEEEcCC-E--------EEE----EEECCCc--EEEEEeCCC---EEEeCEEEECCCCCCCC
Confidence            111        11111222111100 0        000    0000000  00 000000   011112222222  256


Q ss_pred             hccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhh
Q 024958          174 LYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGE  229 (260)
Q Consensus       174 ~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~  229 (260)
                      .+|.+||.+.|.+..+|+ ..|..+..+.  ++.++|+|.|.+|.++|.+|++.++
T Consensus       135 ~~~~~~g~~~~~~~~~~~-~~~~~~~~~~--~~~v~VvG~G~~g~e~a~~l~~~~~  187 (357)
T 4a9w_A          135 YTPEYQGLESFAGIQLHS-AHYSTPAPFA--GMRVAIIGGGNSGAQILAEVSTVAE  187 (357)
T ss_dssp             CCCCCTTGGGCCSEEEEG-GGCCCSGGGT--TSEEEEECCSHHHHHHHHHHTTTSE
T ss_pred             CCCCCCCccccCCcEEEe-ccCCChhhcC--CCEEEEECCCcCHHHHHHHHHhhCC
Confidence            788899999999988887 5565555554  7889999999999999999998775

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.32  E-value=1.9e-12  Score=121.47  Aligned_cols=72  Identities=31%  Similarity=0.502  Sum_probs=61.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc-chHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC-YNNLFRLMKK  100 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~-~~~~~~~~~~  100 (260)
                      ..++|+|||||++||+||+.|+++| ++|+|||+++++||++++....+|..+|.|++++++. ...++....+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~~~~~~~~~~   80 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLTNPLFLEEAQ   80 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTTCHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCCChHHHHHHH
Confidence            3479999999999999999999999 9999999999999999887644789999999999865 3445554443

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.30  E-value=3.3e-12  Score=116.40  Aligned_cols=71  Identities=34%  Similarity=0.549  Sum_probs=62.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      ..+||+|||||++||+||+.|+++| ++|+|||+++++||++++.. .+|..+|.|++++...+.++.+++++
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~~~~~l~~~   76 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYDTIQEIMDR   76 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCHHHHHHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcHHHHHHHHH
Confidence            3579999999999999999999999 99999999999999999876 57889999999987777777666555

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.26  E-value=8.1e-12  Score=117.17  Aligned_cols=71  Identities=28%  Similarity=0.475  Sum_probs=62.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .+||+|||||++||+||+.|+++|++|+|||+++++||++++....+|..+|.|++++.+.+.++++++++
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~   74 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKE   74 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcHHHHHHHHH
Confidence            46899999999999999999999999999999999999998876435889999999998777777666655

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=99.24  E-value=2.5e-13  Score=118.91  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=90.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeec-eeEEcCcchHHHHHHHHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMG-LHIFFGCYNNLFRLMKKFFMDVYRQ  108 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g-~~~~~~~~~~~~~~~~~~f~~~~~~  108 (260)
                      .+||+|||||++|++||++|++.|++|+|+|+. .+||++....    +..++. ....  ...++   ....    ...
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~~~~----~i~~~p~~~~~--~~~~~---~~~~----~~~   71 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMANTE----EVENFPGFEMI--TGPDL---STKM----FEH   71 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCS----CBCCSTTCSSB--CHHHH---HHHH----HHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeeeccc----ccCCcCCcccc--chHHH---HHHH----HHH
Confidence            479999999999999999999999999999984 6899875321    111100 0000  00111   1110    111


Q ss_pred             HHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCCC
Q 024958          109 LRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQ  188 (260)
Q Consensus       109 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~~  188 (260)
                      +.+..........  .            ........    .....++.  ....+.++-+....|..|++||.+.+.+..
T Consensus        72 ~~~~~~~~~~~~~--~------------~~~~~~~~----~~~~~~~~--~~~~d~liiAtGs~~~~~~ipG~~~~~~~~  131 (312)
T 4gcm_A           72 AKKFGAVYQYGDI--K------------SVEDKGEY----KVINFGNK--ELTAKAVIIATGAEYKKIGVPGEQELGGRG  131 (312)
T ss_dssp             HHHTTCEEEECCC--C------------EEEECSSC----EEEECSSC--EEEEEEEEECCCEEECCCCCTTTTTTBTTT
T ss_pred             Hhhccccccceee--e------------eeeeeecc----eeeccCCe--EEEeceeEEcccCccCcCCCCChhhhCCcc
Confidence            1111111000000  0            00000000    00000000  011222333333477888999999887765


Q ss_pred             CCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          189 KTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       189 ~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      .+.. .+  ...+...+++++|+|.|++|.+.|..+++.+++|+.
T Consensus       132 v~~~-~~--~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtl  173 (312)
T 4gcm_A          132 VSYC-AV--CDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTI  173 (312)
T ss_dssp             EESC-HH--HHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             EEee-ec--cCccccCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            5441 11  123334578899999999999999999998887765

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.24  E-value=9.3e-12  Score=115.17  Aligned_cols=72  Identities=26%  Similarity=0.456  Sum_probs=63.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ..+||+|||||++||++|+.|+++|++|+|||+++.+||++++.. .+|..+|.|++++...+.++.++++++
T Consensus        15 ~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~~~g~~~~~~~~~~~~~~~~~~   86 (478)
T 2ivd_A           15 TGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAAL   86 (478)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeec-cCCeeeecChhhhhhhhHHHHHHHHHc
Confidence            357999999999999999999999999999999999999999876 578999999999987777776666653

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.24  E-value=2.9e-12  Score=120.17  Aligned_cols=51  Identities=10%  Similarity=-0.010  Sum_probs=40.9

Q ss_pred             hccCCCCCCCCCCCCCCCCccccc------cccccccccccchhHHHHhHHHHHHHHHHh
Q 024958          174 LYRGGPGKVPLRTDQKTPVKNLFL------AGSYTKQDYIDSMEGPTLSDRQASAYICNA  227 (260)
Q Consensus       174 ~~p~~pG~~~F~G~~~hs~~~yr~------~~~y~~~g~~v~vvG~g~Sg~qia~el~~~  227 (260)
                      ..|.+|+..+|.|.++|+ +.|..      +..|  .||+|+|||+|+||+||+.+|++.
T Consensus       212 ~~P~iP~~~~~~g~v~Hs-s~y~~~~~~~~~~~~--~gKrV~VVG~G~SA~ei~~~L~~~  268 (501)
T 4b63_A          212 GTAKMPSGLPQDPRIIHS-SKYCTTLPALLKDKS--KPYNIAVLGSGQSAAEIFHDLQKR  268 (501)
T ss_dssp             CEECCCTTSCCCTTEEEG-GGHHHHHHHHSCCTT--SCCEEEEECCSHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcceeec-cccccchhhcccccc--CCcEEEEECCcHHHHHHHHHHHhc
Confidence            456666888899999999 55543      2334  499999999999999999999875

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.23  E-value=1.1e-11  Score=112.98  Aligned_cols=72  Identities=24%  Similarity=0.514  Sum_probs=63.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcccccceeeecC-CCcEe-eeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGSFIDK-HGNHI-EMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~~~~~~~~-~g~~~-d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .+||+|||||++||++|+.|+++ |++|+|||+++++||++++.... .|..+ +.|+++++..+++++++++++
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~~   81 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNKRVWDYVRQF   81 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcHHHHHHHHHh
Confidence            57999999999999999999999 99999999999999999987643 67777 489999988888888777653

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.22  E-value=7.3e-12  Score=115.11  Aligned_cols=71  Identities=30%  Similarity=0.450  Sum_probs=64.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC------CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G------~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .+||+|||||++||++|++|+++|      ++|+|||+++.+||+.++.. ..|..+|.|++++...+++++++++++
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l   81 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKKSAPQLVKDL   81 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEEC-CTTCCEESSCCCEETTCTHHHHHHHHT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEec-cCCEEeccChhhhhhCCHHHHHHHHHc
Confidence            479999999999999999999999      99999999999999998875 578999999999988888887777764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.22  E-value=2e-11  Score=110.51  Aligned_cols=72  Identities=28%  Similarity=0.464  Sum_probs=61.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-Ccccccceeeec---------CCCcEeeeceeEEcCcchHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-SFIGGKVGSFID---------KHGNHIEMGLHIFFGCYNNLFRLM   98 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~~~~---------~~g~~~d~g~~~~~~~~~~~~~~~   98 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||++ +.+||+|++...         ..+..++.|++++...+..+.+++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~~~~~  122 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLTLALI  122 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHHHHHHHH
Confidence            4579999999999999999999999999999999 999999997652         256788999998877777666665


Q ss_pred             HH
Q 024958           99 KK  100 (260)
Q Consensus        99 ~~  100 (260)
                      ++
T Consensus       123 ~~  124 (376)
T 2e1m_A          123 DK  124 (376)
T ss_dssp             HH
T ss_pred             HH
Confidence            55

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=99.22  E-value=2.7e-13  Score=118.90  Aligned_cols=172  Identities=13%  Similarity=0.021  Sum_probs=93.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQL  109 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~~l  109 (260)
                      .++|+|||||++||++|+.|+++|++|+|+|+++.+||.|+..  +++.....-+.+......++...+.+       .+
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~   77 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSAL--YPEKYIYDVAGFPKIRAQELINNLKE-------QM   77 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHH--CTTSEECCSTTCSSEEHHHHHHHHHH-------HH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhc--CCCceEeccCCCCCCCHHHHHHHHHH-------HH
Confidence            3689999999999999999999999999999999999999632  22222110000000001111111111       11


Q ss_pred             HhhcCccccCCCCCCCccccccCCCchhhhcCCcc-hhhHHHhcCCCCCCCCChhHHHHHHHH---hhhccCCCCCCCCC
Q 024958          110 RQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQG-SLLQCVLTPGNPYMPLPNDEIIRRVAR---QSLYRGGPGKVPLR  185 (260)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sl~~~v~~~~~~~~~~~~~el~~av~~---~p~~p~~pG~~~F~  185 (260)
                      .. .+......             ..+.-.+.... .+  .+......   ...+.++-+...   .|..|.+||.+.|.
T Consensus        78 ~~-~~~~~~~~-------------~~v~~i~~~~~~~~--~v~~~~g~---~~~d~vVlAtG~~~~~p~~~~~~g~~~~~  138 (332)
T 3lzw_A           78 AK-FDQTICLE-------------QAVESVEKQADGVF--KLVTNEET---HYSKTVIITAGNGAFKPRKLELENAEQYE  138 (332)
T ss_dssp             TT-SCCEEECS-------------CCEEEEEECTTSCE--EEEESSEE---EEEEEEEECCTTSCCEECCCCCTTGGGGB
T ss_pred             HH-hCCcEEcc-------------CEEEEEEECCCCcE--EEEECCCE---EEeCEEEECCCCCcCCCCCCCCCChhhcc
Confidence            11 11111000             00000000000 00  00000000   111222222233   56778889998888


Q ss_pred             CCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          186 TDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       186 G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      +..+|+  .+.....+  .++.++|+|.|.+|.++|.+|.+.+.+|+.
T Consensus       139 g~~~~~--~~~~~~~~--~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~  182 (332)
T 3lzw_A          139 GKNLHY--FVDDLQKF--AGRRVAILGGGDSAVDWALMLEPIAKEVSI  182 (332)
T ss_dssp             TTTEES--SCSCGGGG--BTCEEEEECSSHHHHHHHHHHTTTBSEEEE
T ss_pred             CceEEE--ecCCHHHc--CCCEEEEECCCHhHHHHHHHHHhhCCeEEE
Confidence            877765  33333333  478889999999999999999987766543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.22  E-value=1.5e-11  Score=114.62  Aligned_cols=71  Identities=27%  Similarity=0.438  Sum_probs=63.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+++.+||++++.. .+|..+|.|++++...++++.++++++
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~~~~~l   83 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSL   83 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcHHHHHHHHHc
Confidence            47999999999999999999999999999999999999999876 578999999999987777777766653

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.21  E-value=1.7e-11  Score=113.24  Aligned_cols=71  Identities=21%  Similarity=0.321  Sum_probs=60.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCcccccceeeecCCCcEeeeceeEEcCc---chHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC---YNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~---~~~~~~~~~~~  101 (260)
                      +||+|||||++||++|++|+++|+  +|+|||+++++||++++....+|..+|.|++++...   +.++.++++++
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~l   78 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSEL   78 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHT
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHc
Confidence            689999999999999999999999  999999999999999886645689999999988653   45555555553

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.21  E-value=1.6e-11  Score=111.96  Aligned_cols=73  Identities=33%  Similarity=0.528  Sum_probs=64.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEe-eeceeEEcCcchHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHI-EMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~-d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ...||+|||||++||++|++|+++|++|+|+|+++++||++++.....|..+ +.|+|++...+..++++++++
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~~~~~~~~~~  101 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSKDVFEYLSRF  101 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCHHHHHHHHTS
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChHHHHHHHHHh
Confidence            4579999999999999999999999999999999999999998765677765 999999988888888777653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.21  E-value=1.8e-11  Score=110.96  Aligned_cols=72  Identities=29%  Similarity=0.506  Sum_probs=63.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-CCcEe-eeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-HGNHI-EMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-~g~~~-d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+++.+||++++.... .|..+ |.|+++++..+++++++++++
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~~~~~~~~~l   76 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKH   76 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHTT
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999987632 67775 899999998888888776653

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=99.19  E-value=2.5e-13  Score=119.39  Aligned_cols=44  Identities=30%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc----cCccccccee
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES----RSFIGGKVGS   71 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~----~~~~GG~~~~   71 (260)
                      ...+||+|||||++||++|+.|+++|++|+|||+    ...+||.|..
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            3458999999999999999999999999999999    5589999874

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.17  E-value=2.9e-11  Score=111.82  Aligned_cols=73  Identities=22%  Similarity=0.366  Sum_probs=65.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      |..+||+|||||++||++|+.|+++|  ++|+|||+++.+||++++.. ..|..+|.|++++...+.++.++++++
T Consensus         2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~~~~~l~~~l   76 (475)
T 3lov_A            2 MSSKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKHILTDLIEAI   76 (475)
T ss_dssp             CCSCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC-STTCCEESSCCCEETTSTHHHHHHHHT
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe-eCCEEEecCchhhhcccHHHHHHHHHc
Confidence            34579999999999999999999999  99999999999999998876 588999999999988888877777764

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.17  E-value=5.7e-11  Score=110.89  Aligned_cols=72  Identities=33%  Similarity=0.562  Sum_probs=64.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .++|+|||||++||++|++|+++| .+|+|||+++.+||++++....+|..+|.|++++...+..+.++++++
T Consensus         9 ~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~~~~~l~~~~   81 (484)
T 4dsg_A            9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQYFDDVMDWA   81 (484)
T ss_dssp             SCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBHHHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChHHHHHHHHHH
Confidence            479999999999999999999999 799999999999999998655789999999999988787777777664

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.16  E-value=5.2e-11  Score=108.55  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=57.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC--cchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~--~~~~~~~~~~~  100 (260)
                      +||+|||||++||++|++|+++|++|+|||+++.+||+++++. .+|..+|.|++.+..  ....+.+++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~~~~~~~l~~~   71 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGEDGPLAHLLRI   71 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTTSSHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCCChHHHHHHHH
Confidence            5899999999999999999999999999999999999998876 689999999866543  23444444443

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.15  E-value=5.1e-11  Score=109.43  Aligned_cols=70  Identities=29%  Similarity=0.415  Sum_probs=61.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .+||+|||||++||+||+.|+++|++|+|||+++.+||++++... +|..+|.|.+++...+..+.+++++
T Consensus         5 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~~~g~~~~~~~~~~~~~~~~~   74 (453)
T 2yg5_A            5 QRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQTALISLLDE   74 (453)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE-TTEEEECSCCCBCTTCHHHHHHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceecccc-CCceeccCCeEecCccHHHHHHHHH
Confidence            468999999999999999999999999999999999999987764 7888999999987766666655554

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.15  E-value=6.9e-11  Score=107.78  Aligned_cols=70  Identities=21%  Similarity=0.353  Sum_probs=60.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec--CCCcEeeeceeEEcCc-chHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID--KHGNHIEMGLHIFFGC-YNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~--~~g~~~d~g~~~~~~~-~~~~~~~~~~  100 (260)
                      +||+|||||++||++|++|+++|++|+|+|+++.+||++.+...  .+|..++.|.+++... +.++++.+.+
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~cipg~~~~~g~~~~~~~~~~~~~~~~~~   74 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRNVPGLRVEIGGAYLHRKHHPRLAAELDR   74 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSSSTTCEEESSCCCBCTTTCHHHHHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccCCCCceEecCCeeeCCCCcHHHHHHHHH
Confidence            58999999999999999999999999999999999999886542  2388999999999877 7777666654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.14  E-value=4.8e-11  Score=108.52  Aligned_cols=69  Identities=29%  Similarity=0.516  Sum_probs=56.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcC--cchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG--CYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~--~~~~~~~~~~~  100 (260)
                      +||+|||||++||+||++|+++|++|+|||+++.+||+++++. .+|..+|.|++.+..  .+..+.+++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~~~~~~~l~~~   71 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGPGGPLACFLKE   71 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGGGSHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCCccHHHHHHHH
Confidence            5899999999999999999999999999999999999998865 679999999765532  33444444443

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=99.14  E-value=2.9e-12  Score=111.71  Aligned_cols=168  Identities=12%  Similarity=0.058  Sum_probs=89.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQL  109 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~~l  109 (260)
                      .+||+|||||++||++|+.|+++|++|+|+|++  +||.|....    ....... +-.....++...+.       +.+
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~~~----~~~~~~~-~~~~~~~~~~~~~~-------~~~   80 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTEAG----IVDDYLG-LIEIQASDMIKVFN-------KHI   80 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGGCC----EECCSTT-STTEEHHHHHHHHH-------HHH
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecccc----cccccCC-CCCCCHHHHHHHHH-------HHH
Confidence            479999999999999999999999999999998  999987411    0000000 00000011111111       111


Q ss_pred             HhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCCCC
Q 024958          110 RQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQK  189 (260)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~~~  189 (260)
                      . ..++......             .... +.....+  .+......  ....+.++-+....|..|.+||.+.|.+...
T Consensus        81 ~-~~~v~~~~~~-------------v~~i-~~~~~~~--~v~~~~g~--~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~  141 (323)
T 3f8d_A           81 E-KYEVPVLLDI-------------VEKI-ENRGDEF--VVKTKRKG--EFKADSVILGIGVKRRKLGVPGEQEFAGRGI  141 (323)
T ss_dssp             H-TTTCCEEESC-------------EEEE-EEC--CE--EEEESSSC--EEEEEEEEECCCCEECCCCCTTTTTTBTTTE
T ss_pred             H-HcCCEEEEEE-------------EEEE-EecCCEE--EEEECCCC--EEEcCEEEECcCCCCccCCCCchhhhcCCce
Confidence            1 1122110000             0000 0000000  00000000  0111222222223577788899988877665


Q ss_pred             CCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          190 TPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       190 hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      |. ..+...  ....++.++|+|.|.+|.++|..|.+.+.+|+.
T Consensus       142 ~~-~~~~~~--~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~  182 (323)
T 3f8d_A          142 SY-CSVADA--PLFKNRVVAVIGGGDSALEGAEILSSYSTKVYL  182 (323)
T ss_dssp             ES-CHHHHG--GGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEE
T ss_pred             EE-eccCCH--hHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            54 222222  334478899999999999999999988776543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=99.12  E-value=3e-12  Score=111.36  Aligned_cols=169  Identities=15%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEE-EcccCcccccceeeecC---CCcEeeeceeEEcCcchHHHHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDI-YESRSFIGGKVGSFIDK---HGNHIEMGLHIFFGCYNNLFRLMKKFFMD  104 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v-~E~~~~~GG~~~~~~~~---~g~~~d~g~~~~~~~~~~~~~~~~~~f~~  104 (260)
                      ..+||+|||||++||++|+.|+++|++|+| +|+ +.+||.|......   ++...       .....++...+.+    
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----   70 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQ-------VMDGISFMAPWSE----   70 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCS-------CBCHHHHHHHHHH----
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeeeeceeccCCCCCC-------CCCHHHHHHHHHH----
Confidence            347999999999999999999999999999 999 7889998643211   11100       0001122222111    


Q ss_pred             HHHHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCC
Q 024958          105 VYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPL  184 (260)
Q Consensus       105 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F  184 (260)
                          +....++...             ........+.....+...+.+..    ....+.++-+....|.+|.+||.+.|
T Consensus        71 ----~~~~~~v~~~-------------~~~v~~i~~~~~~~~~v~~~~~~----~~~~d~lvlAtG~~~~~~~~~g~~~~  129 (315)
T 3r9u_A           71 ----QCMRFGLKHE-------------MVGVEQILKNSDGSFTIKLEGGK----TELAKAVIVCTGSAPKKAGFKGEDEF  129 (315)
T ss_dssp             ----HHTTTCCEEE-------------CCCEEEEEECTTSCEEEEETTSC----EEEEEEEEECCCEEECCCCCBTTTTT
T ss_pred             ----HHHHcCcEEE-------------EEEEEEEecCCCCcEEEEEecCC----EEEeCEEEEeeCCCCCCCCCCChhhc
Confidence                1111111100             00000000000000000000000    11122223333336778889999988


Q ss_pred             CCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          185 RTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       185 ~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      .+...|+.. +.  ..+...++.++++|.|.+|.++|..+.+.+.+|+.
T Consensus       130 ~~~~~~~~~-~~--~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~  175 (315)
T 3r9u_A          130 FGKGVSTCA-TC--DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYL  175 (315)
T ss_dssp             BTTTEESCH-HH--HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEE
T ss_pred             CCCeEEeee-cc--cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence            777666622 22  22334578899999999999999999988766543

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.12  E-value=6.1e-11  Score=106.85  Aligned_cols=69  Identities=29%  Similarity=0.405  Sum_probs=60.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEee-eceeEEcCcchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIE-MGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d-~g~~~~~~~~~~~~~~~~~  100 (260)
                      .||+|||||++||++|++|+++|++|+|+|+++.+||++++.. ..|..++ .|+++++..++++++++++
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~~G~~~~~~~~~~~~~~~~~   71 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVND   71 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec-cCCceeeccCCceecCCCHHHHHHHHH
Confidence            5899999999999999999999999999999999999998876 4678885 8999998877777766543

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.10  E-value=1.7e-10  Score=107.04  Aligned_cols=70  Identities=24%  Similarity=0.367  Sum_probs=58.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC----------------CCcEeeeceeEEcCcchH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK----------------HGNHIEMGLHIFFGCYNN   93 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~----------------~g~~~d~g~~~~~~~~~~   93 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+++.+||++++....                ++..++.|++.+...+ .
T Consensus        11 ~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~   89 (489)
T 2jae_A           11 SHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH-I   89 (489)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS-T
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH-H
Confidence            4799999999999999999999999999999999999998776532                5677888888876654 5


Q ss_pred             HHHHHHH
Q 024958           94 LFRLMKK  100 (260)
Q Consensus        94 ~~~~~~~  100 (260)
                      +.+++++
T Consensus        90 ~~~~~~~   96 (489)
T 2jae_A           90 TLDYCRE   96 (489)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555554

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=99.07  E-value=3.5e-12  Score=112.39  Aligned_cols=42  Identities=21%  Similarity=0.318  Sum_probs=39.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .++|+|||||++|+++|+.|+++|++|+|||+++.+||.|..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            5 HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            479999999999999999999999999999999999999863

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.04  E-value=3.7e-10  Score=105.03  Aligned_cols=71  Identities=28%  Similarity=0.424  Sum_probs=59.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+++++||++++... ..+..+|.|++++......+.+++++
T Consensus        33 ~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  104 (498)
T 2iid_A           33 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRK  104 (498)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHHHHHHHHHH
Confidence            579999999999999999999999999999999999999987653 35778899999887655555555444

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=99.03  E-value=2.8e-12  Score=111.91  Aligned_cols=64  Identities=8%  Similarity=0.026  Sum_probs=43.6

Q ss_pred             HHhhhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          170 ARQSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       170 ~~~p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      ...|..|++||.+.+.+...+. ..+.....-...+++++|+|.|++|.++|..+.+.+++|+++
T Consensus       118 G~~~~~~~ipG~~~~~~~~~~~-~~~~~~~~~~~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v  181 (314)
T 4a5l_A          118 GATAKRMHVPGEDKYWQNGVSA-CAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIIL  181 (314)
T ss_dssp             CEEECCCCCTTHHHHBTTTEES-CHHHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             cccccccCCCccccccccceee-ehhhhhhhhhcCCCeEEEECCChHHHHHHHHHHHhCCeeeee
Confidence            3467788888987665544443 111111111234788999999999999999999988887653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=99.02  E-value=9.1e-12  Score=111.09  Aligned_cols=43  Identities=26%  Similarity=0.356  Sum_probs=40.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..+||+|||||++|+++|+.|+++|++|+|||+++.+||.|..
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            3579999999999999999999999999999999999999863

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=99.02  E-value=1.1e-11  Score=106.80  Aligned_cols=166  Identities=13%  Similarity=0.011  Sum_probs=87.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHHHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQLR  110 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~~~l~  110 (260)
                      +||+|||||++||++|+.|+++|++|+|+|+++..++.+.......+.      .  ......+...+       .+.+.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~-------~~~~~   67 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQ------D--GKAPGEIIAEA-------RRQIE   67 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTC------T--TCCHHHHHHHH-------HHHHT
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCC------C--CCCHHHHHHHH-------HHHHH
Confidence            689999999999999999999999999999987554432211101100      0  00011111111       12222


Q ss_pred             hhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCCCCCC
Q 024958          111 QALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRTDQKT  190 (260)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G~~~h  190 (260)
                      ...+...+...          +.    ..+.....  +.+......  ....+.++-+....|..|.+||.+.|.+...|
T Consensus        68 ~~~~v~~~~~~----------v~----~i~~~~~~--~~v~~~~g~--~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~  129 (297)
T 3fbs_A           68 RYPTIHWVEGR----------VT----DAKGSFGE--FIVEIDGGR--RETAGRLILAMGVTDELPEIAGLRERWGSAVF  129 (297)
T ss_dssp             TCTTEEEEESC----------EE----EEEEETTE--EEEEETTSC--EEEEEEEEECCCCEEECCCCBTTGGGBTTTEE
T ss_pred             hcCCeEEEEeE----------EE----EEEEcCCe--EEEEECCCC--EEEcCEEEECCCCCCCCCCCCCchhhcCCeeE
Confidence            21121110000          00    00000000  000000000  01122222233335778889999888776665


Q ss_pred             CCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          191 PVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       191 s~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      . ..+..  .+...++.++|+|.|.+|.++|.+|.+.+ +|+.
T Consensus       130 ~-~~~~~--~~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~  168 (297)
T 3fbs_A          130 H-CPYCH--GYELDQGKIGVIAASPMAIHHALMLPDWG-ETTF  168 (297)
T ss_dssp             S-CHHHH--TGGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEE
T ss_pred             E-cccCc--chhhcCCEEEEEecCccHHHHHHHhhhcC-cEEE
Confidence            5 22322  23345888999999999999999998876 5443

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=99.00  E-value=2.2e-11  Score=113.66  Aligned_cols=44  Identities=27%  Similarity=0.398  Sum_probs=39.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      +..+||+|||||++|+++|+.|+++|++|+|+|+++.+||.|..
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            44589999999999999999999999999999999999998763

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=98.98  E-value=6.8e-10  Score=102.81  Aligned_cols=70  Identities=27%  Similarity=0.490  Sum_probs=58.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcC----cchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFG----CYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~----~~~~~~~~~~~  100 (260)
                      ..+|+|||||++||++|+.|+++|+ +|+|||+++.+||++++.. ..|..+|.|++++.+    ..+.+++++++
T Consensus         4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~-~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~   78 (472)
T 1b37_A            4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVNGGKMNPIWPIVNS   78 (472)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEESSSSCCTHHHHHHT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecc-cCCcEEeeCCeEEeccCCCCCCHHHHHHHh
Confidence            4789999999999999999999999 8999999999999999875 578899999999872    23444444443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.96  E-value=2e-11  Score=107.22  Aligned_cols=170  Identities=14%  Similarity=0.116  Sum_probs=89.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec---CCCcEeeeceeEEcCcchHHHHHHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID---KHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVY  106 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~---~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~  106 (260)
                      .++|+|||||++|+++|+.|+++|++|+|+|++ .+||.|.....   +.+...       ......+.+.+.       
T Consensus         8 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~-------   72 (325)
T 2q7v_A            8 DYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAWSEEVENFPGFPE-------PIAGMELAQRMH-------   72 (325)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGGCSCBCCSTTCSS-------CBCHHHHHHHHH-------
T ss_pred             cCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCcccccccccccCCCCCC-------CCCHHHHHHHHH-------
Confidence            478999999999999999999999999999998 78999864211   111100       000111111111       


Q ss_pred             HHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCC
Q 024958          107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRT  186 (260)
Q Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G  186 (260)
                      ..+. ..++......  .   .......      .....  +.+......  ....+.++.+....|..|.+||.+.|.+
T Consensus        73 ~~~~-~~gv~~~~~~--v---~~i~~~~------~~~~~--~~v~~~~g~--~~~~~~vv~AtG~~~~~~~i~g~~~~~~  136 (325)
T 2q7v_A           73 QQAE-KFGAKVEMDE--V---QGVQHDA------TSHPY--PFTVRGYNG--EYRAKAVILATGADPRKLGIPGEDNFWG  136 (325)
T ss_dssp             HHHH-HTTCEEEECC--E---EEEEECT------TSSSC--CEEEEESSC--EEEEEEEEECCCEEECCCCCTTTTTTBT
T ss_pred             HHHH-HcCCEEEeee--E---EEEEecc------CCCce--EEEEECCCC--EEEeCEEEECcCCCcCCCCCCChhhccC
Confidence            1111 1122111100  0   0000000      00000  000000000  0111222222223567788889888876


Q ss_pred             CCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          187 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       187 ~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ...|... +  .......++.++|+|.|.+|.++|.+|.+.+++|+.
T Consensus       137 ~~~~~~~-~--~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  180 (325)
T 2q7v_A          137 KGVSTCA-T--CDGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTV  180 (325)
T ss_dssp             TTEESCH-H--HHGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEE
T ss_pred             ceEEEec-c--CCHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            5555421 1  122334478889999999999999999887766543

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.95  E-value=1.1e-10  Score=114.21  Aligned_cols=43  Identities=33%  Similarity=0.512  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+++.+||.+..
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            3579999999999999999999999999999999999999874

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.94  E-value=1.1e-11  Score=109.51  Aligned_cols=169  Identities=18%  Similarity=0.205  Sum_probs=88.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCc-chHHHHHHHHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC-YNNLFRLMKKFFMDVYR  107 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~-~~~~~~~~~~~f~~~~~  107 (260)
                      ..++|+|||||++|+++|+.|+++|++|+|||+. .+||.|.........     +.+.... ...+...+.+       
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~-------   79 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMTTTDVENY-----PGFRNGITGPELMDEMRE-------   79 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGSCSCBCCS-----TTCTTCBCHHHHHHHHHH-------
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceeccchhhhc-----CCCCCCCCHHHHHHHHHH-------
Confidence            4579999999999999999999999999999975 789987642110000     0000000 1122211111       


Q ss_pred             HHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHH-hcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCC
Q 024958          108 QLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCV-LTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRT  186 (260)
Q Consensus       108 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v-~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G  186 (260)
                      .+. ..++......  .   ......        .  .  +.+ ......  ....+.++-+....|.+|++||.+.|.+
T Consensus        80 ~~~-~~~v~~~~~~--v---~~i~~~--------~--~--~~v~~~~~g~--~~~~d~lviAtG~~~~~~~i~g~~~~~~  139 (335)
T 2a87_A           80 QAL-RFGADLRMED--V---ESVSLH--------G--P--LKSVVTADGQ--THRARAVILAMGAAARYLQVPGEQELLG  139 (335)
T ss_dssp             HHH-HTTCEEECCC--E---EEEECS--------S--S--SEEEEETTSC--EEEEEEEEECCCEEECCCCCTHHHHTBT
T ss_pred             HHH-HcCCEEEEee--E---EEEEeC--------C--c--EEEEEeCCCC--EEEeCEEEECCCCCccCCCCCchHhccC
Confidence            111 1122111100  0   000000        0  0  000 000000  0111222222223566777888777766


Q ss_pred             CCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          187 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       187 ~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ..+|+...   ...+...++.++|+|.|.+|.++|.++.+.+.+|+.
T Consensus       140 ~~~~~~~~---~~~~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l  183 (335)
T 2a87_A          140 RGVSSCAT---CDGFFFRDQDIAVIGGGDSAMEEATFLTRFARSVTL  183 (335)
T ss_dssp             TTEESCHH---HHGGGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEE
T ss_pred             CceEEeec---cchhhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEE
Confidence            55554211   122223478899999999999999999987776654

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.92  E-value=4.4e-11  Score=104.16  Aligned_cols=39  Identities=26%  Similarity=0.438  Sum_probs=35.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .||+|||||++|+++|+.|+++|++|+|+|+  .+||.|..
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~~   40 (310)
T 1fl2_A            2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILD   40 (310)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceecc
Confidence            6899999999999999999999999999985  57998863

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.92  E-value=3.3e-11  Score=113.42  Aligned_cols=41  Identities=27%  Similarity=0.434  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC--------cccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS--------FIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~--------~~GG~~~   70 (260)
                      .+||+|||||++|+++|.+|++.|++|+|+|+++        .+||.|.
T Consensus        32 ~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   80 (519)
T 3qfa_A           32 DYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCV   80 (519)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccC
Confidence            4799999999999999999999999999999965        7888875

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.91  E-value=2.8e-11  Score=105.48  Aligned_cols=166  Identities=13%  Similarity=0.191  Sum_probs=88.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeec---CCCcEeeeceeEEcCcchHHHHHHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFID---KHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVY  106 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~---~~g~~~d~g~~~~~~~~~~~~~~~~~~f~~~~  106 (260)
                      ++|+|||||++|+++|+.|+++|+ +|+|+|++ .+||.|.....   .++..     ..  -....+.+.+.+      
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~~~~~~~~~~~~~-----~~--~~~~~~~~~l~~------   67 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQITGSSEIENYPGVK-----EV--VSGLDFMQPWQE------   67 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGGGCSCBCCSTTCC-----SC--BCHHHHHHHHHH------
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccccccccccCCCCc-----cc--CCHHHHHHHHHH------
Confidence            589999999999999999999999 99999995 68998863210   11100     00  001111111111      


Q ss_pred             HHHHhhcCccccCCCCCCCccccccCCCchhhhcCCcchhhHHHhcCCCCCCCCChhHHHHHHHHhhhccCCCCCCCCCC
Q 024958          107 RQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGPGKVPLRT  186 (260)
Q Consensus       107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sl~~~v~~~~~~~~~~~~~el~~av~~~p~~p~~pG~~~F~G  186 (260)
                       .+. ..++......          +.   .. +.....  +.+......  ....+.++.+....|.+|++||.+.|.+
T Consensus        68 -~~~-~~~v~~~~~~----------v~---~i-~~~~~~--~~v~~~~g~--~~~~~~vv~AtG~~~~~~~~~g~~~~~~  127 (311)
T 2q0l_A           68 -QCF-RFGLKHEMTA----------VQ---RV-SKKDSH--FVILAEDGK--TFEAKSVIIATGGSPKRTGIKGESEYWG  127 (311)
T ss_dssp             -HHH-TTSCEEECSC----------EE---EE-EEETTE--EEEEETTSC--EEEEEEEEECCCEEECCCCCBTHHHHBT
T ss_pred             -HHH-HcCCEEEEEE----------EE---EE-EEcCCE--EEEEEcCCC--EEECCEEEECCCCCCCCCCCCChhhccC
Confidence             111 1122111100          00   00 000000  000000000  0112222222233667788888877766


Q ss_pred             CCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          187 DQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       187 ~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ...|+...   ...+...++.++|+|.|.+|.++|.++.+.+.+|+.
T Consensus       128 ~~~~~~~~---~~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtl  171 (311)
T 2q0l_A          128 KGVSTCAT---CDGFFYKNKEVAVLGGGDTAVEEAIYLANICKKVYL  171 (311)
T ss_dssp             TTEESCHH---HHGGGGTTSEEEEECCSHHHHHHHHHHHTTSSEEEE
T ss_pred             CcEEEeec---CChhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence            55554221   222334478899999999999999999988766654

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=98.91  E-value=3.2e-09  Score=102.66  Aligned_cols=64  Identities=31%  Similarity=0.514  Sum_probs=56.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcch
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN   92 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~   92 (260)
                      ...++|+|||||++||++|+.|+++|++|+|||+.+.+||+++++. ..+..+|.|++++++...
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~-~~~~~~~~G~~~~~~~~~  168 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGG  168 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc-ccCchhhcCcEEEeCCCC
Confidence            3457999999999999999999999999999999999999998776 567888999999876543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.90  E-value=8.2e-12  Score=115.27  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-----CcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-----HEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-----~~v~v~E~~~~~G   66 (260)
                      ..+|+|||||++||++|..|+++|     ++|+|||+++.+|
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g   71 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR   71 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC
Confidence            369999999999999999999999     9999999999988

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=98.89  E-value=4e-09  Score=104.50  Aligned_cols=63  Identities=32%  Similarity=0.520  Sum_probs=56.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY   91 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~   91 (260)
                      ...++|+|||||++||++|+.|+++|++|+|||+.+.+||+++++. ..+..+|.|++++.+..
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~~~~~~~G~~~~~~~~  338 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLG  338 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEE-ETTEEEESSCCEECCSB
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeec-ccccchhcCceEecCCC
Confidence            3457999999999999999999999999999999999999998776 46788899999987653

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.87  E-value=7.3e-10  Score=107.29  Aligned_cols=42  Identities=36%  Similarity=0.705  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++|+++|..|+++|++|+|+|+++.+||.+.
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            357999999999999999999999999999999999999976

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.86  E-value=1.7e-10  Score=108.62  Aligned_cols=41  Identities=29%  Similarity=0.413  Sum_probs=37.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++|+++|+.|+++|++|+|+|+  .+||.|..
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~~  251 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVLD  251 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGTT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCcccc
Confidence            457999999999999999999999999999986  58999863

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.86  E-value=3.3e-10  Score=110.09  Aligned_cols=44  Identities=30%  Similarity=0.468  Sum_probs=40.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ...++|+|||||++||++|+.|+++|++|+|||+++.+||.+..
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            34589999999999999999999999999999999999999874

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.83  E-value=3.1e-09  Score=98.18  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~   73 (260)
                      .+||+|||||++||++|+.|+++|++|+|||+++.+||+++++.
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~   54 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT   54 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCcccccee
Confidence            47999999999999999999999999999999999999999864

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.83  E-value=4.8e-09  Score=103.14  Aligned_cols=63  Identities=35%  Similarity=0.511  Sum_probs=56.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY   91 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~   91 (260)
                      ..++|+|||||++||++|+.|++.|++|+|+|+.+.+||+.++....+|..+|.|.+++++..
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~  397 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCI  397 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCc
Confidence            357999999999999999999999999999999999999998876667889999999987644

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.82  E-value=4.9e-09  Score=92.78  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=50.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCcccccceeeec--CCCcEeeeceeEEcC
Q 024958           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIGGKVGSFID--KHGNHIEMGLHIFFG   89 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~~GG~~~~~~~--~~g~~~d~g~~~~~~   89 (260)
                      +||+|||||++||++|+.|++   +|++|+||||++.+||++.+...  ..+..+|.|...+..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~   65 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITC   65 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEc
Confidence            589999999999999999999   99999999999999999987642  245677888877643

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.81  E-value=1.4e-10  Score=101.89  Aligned_cols=42  Identities=19%  Similarity=0.332  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc----cCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES----RSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~----~~~~GG~~~~   71 (260)
                      .++|+|||||++|+++|+.|+++|++|+|||+    ...+||.+..
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            47899999999999999999999999999999    6778888763

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=98.80  E-value=4.9e-09  Score=101.76  Aligned_cols=72  Identities=22%  Similarity=0.331  Sum_probs=61.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--------CcEEEEcccC-cc----------------cccceeeecC------CCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG--------HEVDIYESRS-FI----------------GGKVGSFIDK------HGN   78 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G--------~~v~v~E~~~-~~----------------GG~~~~~~~~------~g~   78 (260)
                      .++|+|||||++||++|+.|+++|        ++|+|||+++ ++                ||++.+....      ++.
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~  135 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDT  135 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCc
Confidence            378999999999999999999999        9999999999 99                9999887542      457


Q ss_pred             EeeeceeEEcCcchHHHHHHHHH
Q 024958           79 HIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        79 ~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .+|.|++++......++.+++++
T Consensus       136 ~~e~G~~~~~~~~~~~~~~~~~l  158 (721)
T 3ayj_A          136 IYEVGAMRFPEIAGLTWHYASAA  158 (721)
T ss_dssp             EEECSCCCEETTCHHHHHHHHHH
T ss_pred             EEecCCEEecCccHHHHHHHHHh
Confidence            88999999988777777666653

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=98.79  E-value=7.3e-09  Score=95.15  Aligned_cols=70  Identities=14%  Similarity=0.254  Sum_probs=55.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee-cC-------------------CCcEeeeceeEEcC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI-DK-------------------HGNHIEMGLHIFFG   89 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~-~~-------------------~g~~~d~g~~~~~~   89 (260)
                      .++|+|||||++||++|+.|+++|++|+|+|+++.+||+++++. ..                   .++.+|.|++++..
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~   85 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMA   85 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEET
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeec
Confidence            47999999999999999999999999999999999999999876 10                   34667888888765


Q ss_pred             cchHHHHHHHH
Q 024958           90 CYNNLFRLMKK  100 (260)
Q Consensus        90 ~~~~~~~~~~~  100 (260)
                      .. .+.+++.+
T Consensus        86 ~~-~l~~ll~~   95 (433)
T 1d5t_A           86 NG-QLVKMLLY   95 (433)
T ss_dssp             TS-HHHHHHHH
T ss_pred             cc-hHHHHHHH
Confidence            32 33344333

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.73  E-value=9e-11  Score=106.49  Aligned_cols=42  Identities=29%  Similarity=0.468  Sum_probs=34.8

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           25 HYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        25 ~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ++...+.||+|||||++|+++|..|.+.+.+|+|||+++.++
T Consensus         4 ~~~~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~   45 (385)
T 3klj_A            4 HHHHKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLP   45 (385)
T ss_dssp             ----CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCC
T ss_pred             ccccCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence            344556899999999999999999977889999999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.69  E-value=3.5e-10  Score=104.25  Aligned_cols=39  Identities=33%  Similarity=0.537  Sum_probs=34.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG   67 (260)
                      ..++|+|||||++|+++|+.|++.  |++|+|||+++.+++
T Consensus         2 ~~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~   42 (449)
T 3kd9_A            2 SLKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSH   42 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-
T ss_pred             CcCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcccc
Confidence            357999999999999999999998  789999999987654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.69  E-value=8.1e-09  Score=92.02  Aligned_cols=40  Identities=25%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      |.++||+|||||++||++|+.|+++|++|+||||.+.+|.
T Consensus         2 Me~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A            2 METYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            3458999999999999999999999999999999887653

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.67  E-value=1.2e-08  Score=89.92  Aligned_cols=42  Identities=33%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..||+|||||++||+||++|++  .|++|+|||+.+.+||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            3689999999999999999975  59999999999999998763

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.65  E-value=4.5e-10  Score=104.13  Aligned_cols=37  Identities=24%  Similarity=0.233  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      .++|+|||||++||++|+.|+++  |++|+|||+++.++
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~   41 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS   41 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc
Confidence            47999999999999999999998  89999999998865

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=98.63  E-value=3.6e-08  Score=91.67  Aligned_cols=70  Identities=20%  Similarity=0.326  Sum_probs=56.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecC-------------------CCcEeeeceeEEcCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDK-------------------HGNHIEMGLHIFFGC   90 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~g~~~~~~~   90 (260)
                      ..||+|||+|++|+++|+.|+++|++|+++|+++.+||.+.++...                   +++.+|++++++.. 
T Consensus        20 ~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~-   98 (475)
T 3p1w_A           20 HYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILV-   98 (475)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEET-
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeec-
Confidence            4799999999999999999999999999999999999999876421                   24578888887753 


Q ss_pred             chHHHHHHHH
Q 024958           91 YNNLFRLMKK  100 (260)
Q Consensus        91 ~~~~~~~~~~  100 (260)
                      ..++++.+.+
T Consensus        99 ~g~L~~lL~~  108 (475)
T 3p1w_A           99 GGNLVKILKK  108 (475)
T ss_dssp             TSHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            4455555443

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.51  E-value=1.4e-09  Score=102.82  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      ++|+|||||++||++|+.|+++  |++|+|||+++.++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~   39 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVS   39 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            5899999999999999999998  78999999998875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.50  E-value=2.6e-09  Score=97.39  Aligned_cols=36  Identities=33%  Similarity=0.575  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCc--EEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHE--VDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~--v~v~E~~~~~G   66 (260)
                      ++|+|||||++|+++|..|+++|++  |+|+|+++..+
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~   40 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCC
Confidence            5899999999999999999999987  99999988764

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.49  E-value=8e-08  Score=89.31  Aligned_cols=40  Identities=30%  Similarity=0.386  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++||++|++|+++|++|+|+|+ +.+||.|.
T Consensus        26 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   65 (484)
T 3o0h_A           26 DFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-YRIGGTCV   65 (484)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-CCCCCcee
Confidence            47999999999999999999999999999999 78999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.49  E-value=1.2e-07  Score=87.79  Aligned_cols=43  Identities=40%  Similarity=0.594  Sum_probs=40.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+.+.+||.|.+
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~  163 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVY  163 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeee
Confidence            4579999999999999999999999999999999999998763

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=98.48  E-value=9.8e-08  Score=85.19  Aligned_cols=41  Identities=22%  Similarity=0.384  Sum_probs=36.1

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .....||+|||||++|+++|+.|+++|++|+|+|+....+|
T Consensus        14 ~~~~~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           14 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            34458999999999999999999999999999999876554

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.48  E-value=6e-08  Score=88.85  Aligned_cols=59  Identities=25%  Similarity=0.344  Sum_probs=34.5

Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCccc
Q 024958            1 MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIG   66 (260)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~~G   66 (260)
                      ||||-+++    .-|.+..++...   |...||+|||||++|+++|+.|+++| ++|+|+|++..+|
T Consensus         1 ~~~~~~~~----~~~~~~~~~~~~---m~~~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~~~~~~   60 (448)
T 3axb_A            1 MGSSHHHH----HHSSGLVPRGSH---MPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGHAPG   60 (448)
T ss_dssp             ---------------------------CCEEEEEEECCSHHHHHHHHHHHHHHCSCEEEEESSSSTT
T ss_pred             CCcccccc----ccccccccCccc---CCcCCEEEECcCHHHHHHHHHHHhCCCCcEEEEccCCCCC
Confidence            78888877    233333333332   34579999999999999999999999 9999999955554

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.48  E-value=1.2e-07  Score=82.47  Aligned_cols=43  Identities=21%  Similarity=0.410  Sum_probs=35.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .|...||+|||||++||+||++|+++|++|+|||++. +||.+.
T Consensus         3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~-~gg~~~   45 (304)
T 4fk1_A            3 AMKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNT-NRNRVT   45 (304)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-CGGGGS
T ss_pred             CCCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC-CCCeee
Confidence            4667899999999999999999999999999999864 566653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=98.46  E-value=1.4e-07  Score=83.22  Aligned_cols=39  Identities=36%  Similarity=0.543  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+++.+|+.
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~   42 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTG   42 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCc
Confidence            479999999999999999999999999999999766644

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.46  E-value=1.3e-07  Score=84.69  Aligned_cols=36  Identities=42%  Similarity=0.610  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +++|+|||||++||++|+.|+++|++|+||||.+.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            368999999999999999999999999999997655

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=98.45  E-value=1.4e-07  Score=85.32  Aligned_cols=39  Identities=38%  Similarity=0.640  Sum_probs=34.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ...++|+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            345899999999999999999999999999999988664

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.44  E-value=1.2e-07  Score=84.13  Aligned_cols=41  Identities=44%  Similarity=0.593  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~   71 (260)
                      .++|+|||||++|+++|+.|+++|+ +|+|||+++ +||.|..
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~   45 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKH   45 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHT
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCcccc
Confidence            4789999999999999999999999 999999999 9998864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.42  E-value=1.4e-07  Score=87.29  Aligned_cols=42  Identities=31%  Similarity=0.391  Sum_probs=39.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.+||.|..
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            369999999999999999999999999999999999999873

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.41  E-value=2.3e-07  Score=83.81  Aligned_cols=39  Identities=33%  Similarity=0.436  Sum_probs=35.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +..++|+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~   62 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDRE   62 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTT
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcc
Confidence            345799999999999999999999999999999987643

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.40  E-value=1.9e-07  Score=85.44  Aligned_cols=40  Identities=40%  Similarity=0.527  Sum_probs=36.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      .+||+|||||++|+++|+.|+++|++|+|||+++.+|+.+
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            4799999999999999999999999999999999987654

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.39  E-value=1.3e-07  Score=87.55  Aligned_cols=40  Identities=25%  Similarity=0.442  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|+.|++.|++|+|+|++ .+||.|.
T Consensus        20 ~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~   59 (478)
T 3dk9_A           20 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCV   59 (478)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCccc
Confidence            579999999999999999999999999999976 7899875

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.38  E-value=2.2e-07  Score=85.86  Aligned_cols=41  Identities=24%  Similarity=0.431  Sum_probs=38.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++.|++|+|+|+++.+||.|.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            46899999999999999999999999999999999999986

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.38  E-value=3.2e-07  Score=83.69  Aligned_cols=40  Identities=28%  Similarity=0.373  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||++||++|++|+++|+ +|+|+|+++..||..
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~   46 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVPSAIS   46 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCc
Confidence            4799999999999999999999999 999999999887654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.37  E-value=2.8e-07  Score=80.32  Aligned_cols=41  Identities=37%  Similarity=0.576  Sum_probs=37.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .+||+|||||++|+++|+.|+++|++|+|+|+ ..+||.|..
T Consensus        16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            47899999999999999999999999999999 578998763

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.37  E-value=2.8e-07  Score=85.13  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|++|++.|++|+|+|+++.+||.|.
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   46 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcccccc
Confidence            358999999999999999999999999999999999999985

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.37  E-value=2.6e-07  Score=82.11  Aligned_cols=39  Identities=31%  Similarity=0.301  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..++|+|||||++||++|++|+ +|++|+|||+++.+|+.
T Consensus         8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~g~~   46 (381)
T 3nyc_A            8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQPGYH   46 (381)
T ss_dssp             EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSSTTSS
T ss_pred             CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCcccc
Confidence            3589999999999999999999 69999999999877643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.37  E-value=2.1e-07  Score=85.92  Aligned_cols=40  Identities=25%  Similarity=0.343  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|+.|+++|++|+|+|+ +.+||.|.
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            47999999999999999999999999999999 78999875

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.36  E-value=4e-07  Score=85.50  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=39.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|++|++.|++|+|+|+++.+||.|.
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            358999999999999999999999999999999998999886

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.35  E-value=4.9e-07  Score=87.45  Aligned_cols=39  Identities=31%  Similarity=0.438  Sum_probs=35.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ...||+|||||++|+++|+.|+++|++|+|+|+++.+|+
T Consensus       271 ~~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~  309 (676)
T 3ps9_A          271 SKREAAIIGGGIASALLSLALLRRGWQVTLYCADEAPAL  309 (676)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccc
Confidence            348999999999999999999999999999999877764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=98.35  E-value=3.3e-07  Score=87.12  Aligned_cols=37  Identities=24%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||||++||++|+.|+++|++|+|||+.+.++
T Consensus        49 ~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~   85 (570)
T 3fmw_A           49 TTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPV   85 (570)
T ss_dssp             --CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            4799999999999999999999999999999987664

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.34  E-value=4.1e-07  Score=81.54  Aligned_cols=40  Identities=28%  Similarity=0.533  Sum_probs=35.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      +..++|+|||||++|+++|+.|+++|++|+|||+.+.+++
T Consensus         9 m~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A            9 GKTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            3457999999999999999999999999999999987753

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=98.34  E-value=2.3e-07  Score=84.44  Aligned_cols=40  Identities=35%  Similarity=0.543  Sum_probs=36.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+++.+|+.+
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~   43 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhc
Confidence            4799999999999999999999999999999999886544

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.34  E-value=6e-07  Score=80.61  Aligned_cols=38  Identities=32%  Similarity=0.506  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CC-CcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QG-HEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G-~~v~v~E~~~~~GG   67 (260)
                      ..||+|||||++|+++|+.|++ +| ++|+|+|+++..+|
T Consensus        21 ~~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~~~~g   60 (405)
T 2gag_B           21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGWLAGG   60 (405)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSSTTCS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCCCCCC
Confidence            5799999999999999999999 99 99999999984443

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.33  E-value=3.2e-07  Score=84.49  Aligned_cols=40  Identities=28%  Similarity=0.471  Sum_probs=38.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+++|.+|++.|++|+|+|+++.+||.|.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   41 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVEKEKALGGTCL   41 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEeCCCCCCCccc
Confidence            6899999999999999999999999999999999999975

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.32  E-value=3.3e-07  Score=84.78  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=39.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|..|++.|++|+|+|+++.+||.|.
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            47899999999999999999999999999999999999985

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=98.32  E-value=5e-07  Score=85.49  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=36.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ...+||+|||||++||++|+.|++.|++|+|||+.+.+++
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~  144 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRE  144 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccc
Confidence            3458999999999999999999999999999999987744

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.30  E-value=4.6e-07  Score=83.67  Aligned_cols=40  Identities=38%  Similarity=0.609  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|+++|++|+|+|++ .+||.|.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            479999999999999999999999999999998 7899886

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.30  E-value=7.8e-07  Score=86.28  Aligned_cols=39  Identities=28%  Similarity=0.358  Sum_probs=35.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++|++|+|||+.+.+|+.
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~g  302 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQG  302 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSSTTCS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCccccc
Confidence            479999999999999999999999999999998877643

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.30  E-value=5.3e-07  Score=83.43  Aligned_cols=40  Identities=30%  Similarity=0.412  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      .+||+|||||++|+++|++|+++|++|+|+|+++.+||.+
T Consensus         3 ~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            3 KFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            4799999999999999999999999999999998544443

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=98.30  E-value=6.1e-07  Score=85.64  Aligned_cols=40  Identities=43%  Similarity=0.607  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .|..+||+|||||++|+++|+.|+++|++|+|+|+.+.++
T Consensus        20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~   59 (591)
T 3i3l_A           20 HMTRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR   59 (591)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC
Confidence            3556899999999999999999999999999999986543

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.30  E-value=5.1e-07  Score=81.16  Aligned_cols=36  Identities=31%  Similarity=0.652  Sum_probs=33.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            699999999999999999999999999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.29  E-value=4.2e-07  Score=84.13  Aligned_cols=41  Identities=32%  Similarity=0.454  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|+.|++.|++|+|+|+++.+||.|.
T Consensus         5 ~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   45 (478)
T 1v59_A            5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (478)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccc
Confidence            37899999999999999999999999999999999999875

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=3.7e-07  Score=84.72  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=37.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|++|++.|++|+|+|++ .+||.|.
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   50 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEAK-ALGGTCV   50 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEESS-CTTHHHH
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeCC-CcCCcCc
Confidence            3579999999999999999999999999999997 6899885

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.29  E-value=6.6e-07  Score=79.86  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+..+
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            4799999999999999999999999999999987665

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=98.29  E-value=5.3e-07  Score=77.96  Aligned_cols=39  Identities=36%  Similarity=0.520  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++ |++|+|+|+++.+||.
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~   78 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGG   78 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCc
Confidence            46899999999999999999997 9999999999998875

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.28  E-value=3.6e-07  Score=84.30  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+++|.+|++.|++|+|+|+ +.+||.|.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            347999999999999999999999999999999 78999986

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.28  E-value=4.8e-07  Score=80.37  Aligned_cols=38  Identities=21%  Similarity=0.231  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+..+|
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~~~~~   39 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQ   39 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTCCEEEECSSCSSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            36899999999999999999999999999999887654

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.27  E-value=7.6e-07  Score=80.65  Aligned_cols=38  Identities=37%  Similarity=0.526  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~GG   67 (260)
                      ..+|+|||||++||++|+.|+++|++ |+|||+.+.++.
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            47999999999999999999999999 999999887653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.27  E-value=6.4e-07  Score=83.84  Aligned_cols=41  Identities=29%  Similarity=0.489  Sum_probs=38.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||+|++||++|+.|+++|++|+|+||.+.+||...
T Consensus        41 ~~DVvVVGaG~AGl~AA~~aa~~G~~V~vlEk~~~~GG~s~   81 (510)
T 4at0_A           41 EADVVVAGYGIAGVAASIEAARAGADVLVLERTSGWGGATA   81 (510)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcch
Confidence            47999999999999999999999999999999999998753

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=98.26  E-value=8.7e-07  Score=79.91  Aligned_cols=37  Identities=30%  Similarity=0.601  Sum_probs=34.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..++|+|||||++||++|+.|+++|++|+|||+.+.+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4579999999999999999999999999999998764

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.26  E-value=8.8e-07  Score=78.72  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+....+
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~   42 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDLPED   42 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCC
Confidence            4799999999999999999999999999999976433

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.25  E-value=4.4e-07  Score=78.82  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=37.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      .++|+|||||++|+++|+.|+++|++|+|||+. .+||.|..
T Consensus         5 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   45 (320)
T 1trb_A            5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   45 (320)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEec
Confidence            478999999999999999999999999999974 78888753

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=98.25  E-value=7.4e-07  Score=83.28  Aligned_cols=42  Identities=31%  Similarity=0.308  Sum_probs=35.4

Q ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           25 HYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        25 ~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +.+....+|+|||||++||++|+.|+++|++|+||||.+.++
T Consensus         7 ~~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   48 (499)
T 2qa2_A            7 HHHRSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRT   48 (499)
T ss_dssp             ----CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCC
T ss_pred             cccCCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence            344566899999999999999999999999999999987664

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=98.25  E-value=6.7e-07  Score=80.86  Aligned_cols=34  Identities=38%  Similarity=0.530  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3799999999999999999999999999999987

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.25  E-value=6.8e-07  Score=83.09  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=37.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc--------cCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYES--------RSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~--------~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|.+|++.|++|+|+|+        ...+||.|.
T Consensus         6 ~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~   54 (488)
T 3dgz_A            6 SFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCV   54 (488)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeec
Confidence            47999999999999999999999999999998        567899885

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=98.24  E-value=8.8e-07  Score=84.01  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||||++||++|+.|+++|++|+||||.+.+||...
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  166 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK  166 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchh
Confidence            47999999999999999999999999999999999998754

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.24  E-value=7.1e-07  Score=84.34  Aligned_cols=38  Identities=24%  Similarity=0.248  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..+|+|||||++||++|+.|+++|++|+||||.+.++.
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            46899999999999999999999999999999887653

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.24  E-value=6.7e-07  Score=83.02  Aligned_cols=41  Identities=32%  Similarity=0.489  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++.|++|+|+|+++.+||.|.
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            47899999999999999999999999999999999999875

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.24  E-value=6.9e-07  Score=81.00  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      .||+|||||++|+++|+.|+++  |++|+|+|+....+
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~   74 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPN   74 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            6899999999999999999999  99999999976544

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.23  E-value=6.9e-07  Score=82.58  Aligned_cols=40  Identities=28%  Similarity=0.485  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++.|++|+|+|++ .+||.|.
T Consensus         4 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (463)
T 2r9z_A            4 HFDLIAIGGGSGGLAVAEKAAAFGKRVALIESK-ALGGTCV   43 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCCcEEEEcCC-CCCCcCc
Confidence            479999999999999999999999999999998 7899875

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=98.23  E-value=8.9e-07  Score=81.45  Aligned_cols=39  Identities=26%  Similarity=0.501  Sum_probs=36.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+.+|+.
T Consensus        26 ~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~   64 (447)
T 2i0z_A           26 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRK   64 (447)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCce
Confidence            479999999999999999999999999999999988754

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=98.23  E-value=9.9e-07  Score=82.44  Aligned_cols=41  Identities=34%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ......+|+|||||++||++|+.|+++|++|+||||.+.++
T Consensus         7 ~~~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~   47 (500)
T 2qa1_A            7 HHRSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERT   47 (500)
T ss_dssp             -CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-C
T ss_pred             CccCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            34456899999999999999999999999999999987764

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.23  E-value=9.8e-07  Score=78.72  Aligned_cols=35  Identities=37%  Similarity=0.668  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|++..
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~~   39 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRFI   39 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            47999999999999999999999999999999853

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.22  E-value=6.4e-07  Score=79.26  Aligned_cols=37  Identities=30%  Similarity=0.510  Sum_probs=33.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC------CcEEEEcccCcccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG------HEVDIYESRSFIGG   67 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G------~~v~v~E~~~~~GG   67 (260)
                      +||+|||||++|+++|+.|+++|      ++|+|+|++...+|
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            58999999999999999999998      99999999875443

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.22  E-value=6.1e-07  Score=82.80  Aligned_cols=40  Identities=28%  Similarity=0.482  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|+.|++.|++|+|+|++ .+||.|.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-~~gG~~~   42 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-YWGGVCL   42 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCccc
Confidence            368999999999999999999999999999998 7888874

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.22  E-value=7.7e-07  Score=82.93  Aligned_cols=39  Identities=31%  Similarity=0.426  Sum_probs=36.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+++|++|++.|++|+|+|++. +||.|.
T Consensus         9 ~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            9 VDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            699999999999999999999999999999974 999874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.20  E-value=7.7e-07  Score=81.92  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++.|++|+|+|++ .+||.|.
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~~~   43 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   43 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcCC-CCCCccc
Confidence            479999999999999999999999999999997 7899875

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.20  E-value=1.5e-06  Score=72.89  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ...||+|||||++|+.+|..|++.|++|+|+|++....|
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G   40 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVM   40 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCC
Confidence            357999999999999999999999999999999854444

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.20  E-value=1e-06  Score=79.13  Aligned_cols=35  Identities=34%  Similarity=0.447  Sum_probs=33.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~   65 (260)
                      ++|+|||||++||++|+.|+++  |++|+|||+++.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            4899999999999999999999  9999999998776

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.20  E-value=7e-07  Score=82.52  Aligned_cols=40  Identities=25%  Similarity=0.400  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|..|++.|++|+|+|+++ +||.|.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~~-~GG~~~   45 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAGE-VGGVCL   45 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC-CCCCCC
Confidence            4789999999999999999999999999999987 899875

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.20  E-value=7e-07  Score=82.57  Aligned_cols=42  Identities=29%  Similarity=0.326  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHH-C------CCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLD-Q------GHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~-~------G~~v~v~E~~~~~GG~~~   70 (260)
                      ..++|+|||||++|+++|..|++ .      |++|+|||+.+.+||.|+
T Consensus         2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            45799999999999999999999 7      999999999999999986

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.19  E-value=1.3e-06  Score=81.48  Aligned_cols=40  Identities=20%  Similarity=0.382  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ...||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~~~~gt   41 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACAT   41 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCEEEEECCCCCCCc
Confidence            3579999999999999999999999999999998755544

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.19  E-value=1e-06  Score=82.05  Aligned_cols=41  Identities=20%  Similarity=0.400  Sum_probs=37.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEc--------ccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYE--------SRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E--------~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++ .|++|+|+|        +.+.+||.|.
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~   52 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCV   52 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHH
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCcccc
Confidence            4799999999999999999999 999999999        4678899875

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.19  E-value=9.2e-07  Score=83.82  Aligned_cols=41  Identities=27%  Similarity=0.485  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||||++||++|+.|+++|++|+||||.+.+||...
T Consensus       121 ~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~  161 (566)
T 1qo8_A          121 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM  161 (566)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            46899999999999999999999999999999999988643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.19  E-value=1.1e-06  Score=78.21  Aligned_cols=40  Identities=30%  Similarity=0.428  Sum_probs=36.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||++||++|+.|+++  |++|+|+|+.+.+||..
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~  120 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGA  120 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCcc
Confidence            46999999999999999999997  99999999999887653

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1.1e-06  Score=81.94  Aligned_cols=40  Identities=25%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|.+|++.|++|+|+|++ .+||.|.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-~~GG~c~   41 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   41 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-CcCcccc
Confidence            379999999999999999999999999999998 4899885

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.18  E-value=1.1e-06  Score=80.81  Aligned_cols=40  Identities=28%  Similarity=0.447  Sum_probs=37.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|.+|++.|++|+|+|++ .+||.|.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            368999999999999999999999999999998 7899874

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.18  E-value=7e-07  Score=83.23  Aligned_cols=39  Identities=26%  Similarity=0.472  Sum_probs=37.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+++|++|+++   |++|+|+|+++ +||.|.
T Consensus         3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            6899999999999999999999   99999999998 999875

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.17  E-value=1.5e-06  Score=82.37  Aligned_cols=42  Identities=24%  Similarity=0.495  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...||+|||||++|+++|+.|+++|++|+|+|+++..+|...
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d~~~GtS~   58 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSS   58 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSSTTCSGGG
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCCCccc
Confidence            458999999999999999999999999999999987776643

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.16  E-value=1.5e-06  Score=80.54  Aligned_cols=42  Identities=26%  Similarity=0.366  Sum_probs=36.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc---C------cccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR---S------FIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~---~------~~GG~~~   70 (260)
                      ..+||+|||||++|+++|++|++.|++|+|+|+.   +      .+||.|.
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~   58 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCV   58 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeec
Confidence            4589999999999999999999999999999942   1      3788875

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.15  E-value=1.2e-06  Score=80.24  Aligned_cols=34  Identities=32%  Similarity=0.605  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999976

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.15  E-value=2e-06  Score=80.36  Aligned_cols=40  Identities=33%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..++|+|||||++||++|..|++.|++|+|+|+.+.+|+.
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            3579999999999999999999999999999999888754

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.14  E-value=1.5e-06  Score=77.01  Aligned_cols=38  Identities=37%  Similarity=0.455  Sum_probs=35.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||||++||++|+.|+++  |++|+|+|+++.+||.
T Consensus        66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg  105 (326)
T 2gjc_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGG  105 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTT
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccc
Confidence            4899999999999999999998  9999999999999854

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=98.14  E-value=1.3e-06  Score=83.12  Aligned_cols=39  Identities=36%  Similarity=0.508  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||++|+.|++.      |++|+|+||.+.+|+.
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            37999999999999999999999      9999999999888764

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.14  E-value=1.1e-06  Score=81.88  Aligned_cols=41  Identities=22%  Similarity=0.427  Sum_probs=37.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEc--------ccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYE--------SRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E--------~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|++|++ .|++|+|+|        +.+.+||.|.
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            4799999999999999999999 999999999        4678999886

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=98.13  E-value=1.4e-06  Score=81.41  Aligned_cols=34  Identities=26%  Similarity=0.422  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A            7 VFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCC
Confidence            4799999999999999999999999999999987

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.13  E-value=1.5e-06  Score=78.03  Aligned_cols=34  Identities=35%  Similarity=0.409  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+|+|||||++||++|+.|+++|++|+|||+.+.
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            6899999999999999999999999999999875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=98.13  E-value=1.9e-06  Score=77.57  Aligned_cols=36  Identities=33%  Similarity=0.377  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..||+|||||++|+++|+.|+++|++|+|||+.+.+
T Consensus         6 ~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A            6 HIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            369999999999999999999999999999998765

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.12  E-value=2.6e-06  Score=81.89  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~~~G   66 (260)
                      ..+|+|||||++||++|+.|++ .|++|+||||.+.++
T Consensus        32 ~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            4789999999999999999999 999999999987654

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.11  E-value=2.6e-06  Score=80.38  Aligned_cols=58  Identities=24%  Similarity=0.165  Sum_probs=33.0

Q ss_pred             CCcccccccCCCCCCCCCCCCCCCCCCCCCCcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccC
Q 024958            1 MGSSLLLVSGSTEDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRS   63 (260)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~   63 (260)
                      ||||-.-+--+...|.+...   |.  ++.++|+|||||++|+++|+.|++   .|++|+|+|+.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~---M~--~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A            1 MGSSHHHHHHSSGLVPRGSH---MS--GKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             -----------------------CC--SCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCCccccccccCCcccCCcc---cC--CCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            56665554444443333111   11  235799999999999999999999   999999999965

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.10  E-value=1.8e-06  Score=79.44  Aligned_cols=36  Identities=36%  Similarity=0.571  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+.+
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            369999999999999999999999999999998764

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=98.09  E-value=2.6e-06  Score=79.97  Aligned_cols=37  Identities=41%  Similarity=0.580  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..+|+|||||++||++|+.|+++|++|+||||.+.++
T Consensus         5 ~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A            5 EVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             cCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4799999999999999999999999999999987664

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=98.09  E-value=2e-06  Score=79.53  Aligned_cols=42  Identities=36%  Similarity=0.484  Sum_probs=39.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~   71 (260)
                      .++|+|||||++|+++|..|++.|  ++|+|||+.+.+||.|+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~   49 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   49 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeec
Confidence            479999999999999999999998  999999999999998853

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.09  E-value=2.4e-06  Score=81.21  Aligned_cols=40  Identities=23%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      .+..++|+|||||++||++|+.|+++  |++|+|||+++.+|
T Consensus        33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~   74 (588)
T 3ics_A           33 RWGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS   74 (588)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS
T ss_pred             cccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc
Confidence            45568999999999999999999998  89999999998865

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.08  E-value=3.1e-06  Score=80.37  Aligned_cols=39  Identities=31%  Similarity=0.572  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+++..+|.
T Consensus        32 ~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~~~~Gt   70 (571)
T 2rgh_A           32 ELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQDFAEGT   70 (571)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTCSG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            579999999999999999999999999999998766664

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.07  E-value=2.7e-06  Score=85.54  Aligned_cols=41  Identities=32%  Similarity=0.486  Sum_probs=39.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|+++|..|++.|++|+|||+++.+||++.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            47899999999999999999999999999999999999987

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.06  E-value=2.8e-06  Score=85.92  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~   70 (260)
                      .++|+|||||++||++|+.|+++|+ +|+|||+.+.+||.+.
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~  228 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST  228 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCcccc
Confidence            5799999999999999999999999 7999999999999864

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.06  E-value=2.6e-06  Score=81.23  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=35.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||++|+.|+++|++|+|+||....||.
T Consensus         7 ~~DVvVVGaG~AGl~AA~~la~~G~~V~vlEK~~~~~g~   45 (588)
T 2wdq_A            7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (588)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            469999999999999999999999999999999877654

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.04  E-value=3.5e-06  Score=80.89  Aligned_cols=40  Identities=30%  Similarity=0.478  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||||++|+++|+.|+++|++|+|+|+.+..||.+
T Consensus        46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            4799999999999999999999999999999999988855

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.01  E-value=2.3e-06  Score=79.74  Aligned_cols=40  Identities=40%  Similarity=0.643  Sum_probs=37.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccccee
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~   71 (260)
                      +||+|||||++|+++|+.|+++ ++|+|||+++.+||.+..
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            6899999999999999999999 999999999999998763

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.00  E-value=4.2e-06  Score=79.68  Aligned_cols=42  Identities=19%  Similarity=0.355  Sum_probs=36.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc-C-------cccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-S-------FIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~-~-------~~GG~~~   70 (260)
                      ..+||+|||||++||++|..|+++|++|+|||+. +       .+||.|.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~  155 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCV  155 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHH
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEe
Confidence            3579999999999999999999999999999973 2       3677654

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=97.98  E-value=4.4e-06  Score=76.81  Aligned_cols=36  Identities=33%  Similarity=0.627  Sum_probs=34.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      +||+|||||++|+++|+.|+++  |++|+|||+++.+|
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g   40 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVG   40 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCc
Confidence            6999999999999999999998  89999999999877

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=97.98  E-value=6.4e-06  Score=74.51  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~G   66 (260)
                      +++|+|||||++|+++|..|+++|+  +|+|||+++..+
T Consensus         1 ~k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~   39 (404)
T 3fg2_P            1 NDTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP   39 (404)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS
T ss_pred             CCCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC
Confidence            3689999999999999999999999  899999998654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.98  E-value=6.1e-06  Score=77.54  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~   64 (260)
                      .++|+|||||++|+++|+.|++   .|++|+|+|+...
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence            4799999999999999999999   9999999999653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.97  E-value=5.8e-06  Score=78.47  Aligned_cols=41  Identities=37%  Similarity=0.541  Sum_probs=37.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+|+|||+|++||++|+.|+++|++|+|||+.+.+||...
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~  166 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK  166 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchh
Confidence            46899999999999999999999999999999999988753

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.96  E-value=6.7e-06  Score=65.63  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||||++|+.+|..|++.|.+|+|+|+.+.
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~   35 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGRS   35 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            5899999999999999999999999999999873

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.95  E-value=4.9e-06  Score=75.27  Aligned_cols=38  Identities=18%  Similarity=0.294  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~~GG~   68 (260)
                      ++|+|||||++||++|+.|++   .|++|+|+|+++..+..
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~   42 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFR   42 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceec
Confidence            589999999999999999999   89999999999876543

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.95  E-value=7e-06  Score=76.10  Aligned_cols=36  Identities=39%  Similarity=0.684  Sum_probs=33.2

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ||+|||||++||++|+.|+++|++|+|+||. ..||.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~-~~~g~   36 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR-IDGGS   36 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS-TTCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCch
Confidence            6999999999999999999999999999999 55665

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.94  E-value=6.8e-06  Score=79.38  Aligned_cols=39  Identities=23%  Similarity=0.303  Sum_probs=35.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||+||+.|+++|++|+|+||....+|.
T Consensus         5 ~~DVvVIGgG~AGL~AAl~aae~G~~V~vlEK~~~~~g~   43 (660)
T 2bs2_A            5 YCDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (660)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             cccEEEECchHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            369999999999999999999999999999998876543

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.94  E-value=7.1e-06  Score=78.70  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||+||+.|+++|++|+|+||....+|.
T Consensus        18 ~~DVvVVG~G~AGl~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           18 EFDAVVVGAGGAGLRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            469999999999999999999999999999998776654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.92  E-value=8.3e-06  Score=80.65  Aligned_cols=36  Identities=28%  Similarity=0.562  Sum_probs=33.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~   65 (260)
                      ..||+|||||++|+++|++|+++|+ +|+|+|++...
T Consensus         4 ~~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~~~   40 (830)
T 1pj5_A            4 TPRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   40 (830)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence            4799999999999999999999998 99999998863

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.91  E-value=6.4e-06  Score=77.70  Aligned_cols=38  Identities=37%  Similarity=0.542  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||++||++|+.|++ |++|+|+||.+..||.
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            4799999999999999999999 9999999999887764

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=97.90  E-value=9.4e-06  Score=73.63  Aligned_cols=38  Identities=32%  Similarity=0.427  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc--EEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE--VDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~--v~v~E~~~~~GG   67 (260)
                      .++|+|||||++|+++|..|+++|++  |+|+|+++.++.
T Consensus         9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y   48 (415)
T 3lxd_A            9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPY   48 (415)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCB
T ss_pred             CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCc
Confidence            47999999999999999999999987  999999987653

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.89  E-value=8.9e-06  Score=76.25  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH------------CCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD------------QGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~------------~G~~v~v~E~~~~   64 (260)
                      .++|+|||||++|+++|..|++            .|++|+|+|+.+.
T Consensus         7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            4799999999999999999999            9999999999754

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.88  E-value=1.8e-05  Score=73.56  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=35.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG   67 (260)
                      ..+||+|||||++|+++|..|++.|   ++|+|+|+++.+|.
T Consensus        34 m~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~   75 (490)
T 2bc0_A           34 WGSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISF   75 (490)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSB
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCc
Confidence            3579999999999999999999988   99999999887653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.85  E-value=7e-06  Score=76.46  Aligned_cols=34  Identities=35%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~   64 (260)
                      ++|+|||||++|+++|+.|++   +|++|+|+|+.+.
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            689999999999999999999   9999999999754

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.84  E-value=1.2e-05  Score=77.74  Aligned_cols=38  Identities=13%  Similarity=0.294  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC------CCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ------GHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~------G~~v~v~E~~~~~GG   67 (260)
                      ..||+|||||++||+||+.|+++      |++|+|+||....++
T Consensus        22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~~~s   65 (662)
T 3gyx_A           22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASLERS   65 (662)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCTTTC
T ss_pred             EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCCCCC
Confidence            47999999999999999999997      999999999865443

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.84  E-value=1.3e-05  Score=72.66  Aligned_cols=38  Identities=29%  Similarity=0.342  Sum_probs=33.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~G   66 (260)
                      ..++|+|||||++|+++|+.|++.|+  +|+|+|+++.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~   45 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERP   45 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCc
Confidence            35799999999999999999999998  499999987653

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.83  E-value=1.2e-05  Score=76.87  Aligned_cols=38  Identities=21%  Similarity=0.348  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG   67 (260)
                      ..||+|||||++||++|+.|+++|  ++|+|+||....+|
T Consensus         5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~   44 (602)
T 1kf6_A            5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS   44 (602)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCC
Confidence            369999999999999999999999  99999999876654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=97.82  E-value=1.3e-05  Score=73.57  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      +||+|||||++|+++|..|+++  |++|+|+|+++.+|
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNIS   38 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            4899999999999999999998  99999999998764

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.82  E-value=1.3e-05  Score=73.46  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=33.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      +||+|||||++|+++|..|++.  |++|+|+|+++.+|
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   38 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS   38 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC
Confidence            4899999999999999999998  99999999998765

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=97.81  E-value=2e-05  Score=71.49  Aligned_cols=38  Identities=37%  Similarity=0.479  Sum_probs=34.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ++|+|||||++|+.+|+.|+++|++|+|+|+++..+..
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp   39 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTP   39 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCc
Confidence            58999999999999999999999999999998754443

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.80  E-value=1.3e-05  Score=75.66  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=35.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc--------Ccccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR--------SFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~--------~~~GG~~~   70 (260)
                      +||+|||+|++|+++|.++++.|.+|.|+|+.        ..+||.|-
T Consensus        43 YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCl   90 (542)
T 4b1b_A           43 YDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCV   90 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccc
Confidence            69999999999999999999999999999974        34788764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.79  E-value=1.8e-05  Score=75.96  Aligned_cols=38  Identities=24%  Similarity=0.328  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC-cccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~-~~GG   67 (260)
                      ..||+|||||++|++||+.|++.|.+|+|+|+.. .+|+
T Consensus        21 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           21 MYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             cCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            4799999999999999999999999999999985 4554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.79  E-value=1.3e-05  Score=77.12  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHH---H-CCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELL---D-QGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~---~-~G~~v~v~E~~~~~   65 (260)
                      ..||+|||||++||+||+.|+   + +|.+|+|+||....
T Consensus        22 ~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~~   61 (643)
T 1jnr_A           22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   61 (643)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             cCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCCC
Confidence            479999999999999999999   6 89999999998753

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=97.77  E-value=1.6e-05  Score=74.09  Aligned_cols=38  Identities=21%  Similarity=0.310  Sum_probs=34.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      ..++|+|||||++|+++|..|+++  |.+|+|+|+++.++
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            357899999999999999999887  88999999998764

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.76  E-value=2.2e-05  Score=75.18  Aligned_cols=37  Identities=27%  Similarity=0.532  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC-ccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~-~~G   66 (260)
                      ..||+|||||++|+.||+.|++.|.+|+|+|++. .+|
T Consensus        27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG   64 (637)
T 2zxi_A           27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIG   64 (637)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccC
Confidence            4799999999999999999999999999999984 454

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.75  E-value=2e-05  Score=76.11  Aligned_cols=36  Identities=36%  Similarity=0.414  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-----CCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-----QGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-----~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++||++|+.|++     .|++|+||||.+.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            4689999999999999999999     99999999997654

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.75  E-value=1.8e-05  Score=75.97  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..||+|||||++|++||+.|++.|.+|+|+|++.
T Consensus        28 ~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~   61 (651)
T 3ces_A           28 PFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNI   61 (651)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cCCEEEECChHHHHHHHHHHHhCCCCEEEEeecc
Confidence            5799999999999999999999999999999974

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.73  E-value=2.2e-05  Score=72.67  Aligned_cols=37  Identities=27%  Similarity=0.429  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~G   66 (260)
                      .+||+|||||++|+++|..|++.  |++|+|+|+++..+
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~   74 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYS   74 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCS
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCC
Confidence            36999999999999999999996  89999999988765

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.72  E-value=2e-05  Score=73.71  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=33.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+++|+|||||++|+++|..|++.+++|+|+|+++.
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            3467899999999999999999999999999999763

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.71  E-value=3.4e-05  Score=70.47  Aligned_cols=37  Identities=30%  Similarity=0.492  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~G   66 (260)
                      .++|+|||||++|+++|..|+++|+  +|+|+|+++.++
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~   42 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   42 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC
Confidence            4799999999999999999999998  799999987653

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=97.70  E-value=2.6e-05  Score=70.12  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      .|||+|||||++|+++|.+|++.+  .+|+|+|+++.
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            479999999999999999999876  58999999875

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.69  E-value=2.2e-05  Score=72.01  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~G   66 (260)
                      +||+|||||++|+++|.+|++.|  .+|+|+|+++..+
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~   38 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS   38 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCC
Confidence            47999999999999999999988  4799999987654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=2.7e-05  Score=69.65  Aligned_cols=35  Identities=29%  Similarity=0.387  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+|+|||||++|+++|..|++.| +|+|+|+++..
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCC
Confidence            358999999999999999999999 99999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.63  E-value=4.4e-05  Score=68.45  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~   63 (260)
                      .++|+|||||++|+++|..|+++|  .+|+++|+++
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~   39 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD   39 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence            478999999999999999999999  4689999875

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=97.61  E-value=3e-05  Score=70.86  Aligned_cols=34  Identities=38%  Similarity=0.724  Sum_probs=32.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~   64 (260)
                      ++|+|||||++|+++|+.|++   .|++|+|+|+++.
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~   41 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDY   41 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCC
Confidence            689999999999999999999   8999999999874

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.60  E-value=4.5e-05  Score=69.64  Aligned_cols=34  Identities=26%  Similarity=0.533  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~   64 (260)
                      ++|+|||||++|+++|.+|++.+  ++|+|+|+++.
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~   38 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPY   38 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCC
Confidence            68999999999999999999876  79999999874

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.54  E-value=6.7e-05  Score=70.59  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|++|||+|++|+++|.+|++.|++|+|+|+...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~   41 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGP   41 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            458999999999999999999999999999999864

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=97.53  E-value=5.3e-05  Score=70.59  Aligned_cols=37  Identities=27%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~~   64 (260)
                      .+.+|+||||+|.+|+.+|.+|++ .|++|+|+|+...
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            457999999999999999999998 6799999999754

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.50  E-value=0.00011  Score=70.51  Aligned_cols=43  Identities=35%  Similarity=0.517  Sum_probs=41.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   72 (260)
                      .+||+|||+|+.|...|..|++.|++|+++|++++.||.|++.
T Consensus         8 ~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~   50 (650)
T 1vg0_A            8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASF   50 (650)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccc
Confidence            4899999999999999999999999999999999999999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=97.32  E-value=0.0001  Score=69.34  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..|++|||+|.+|+.+|.+|++ |.+|+|+|+....+
T Consensus        26 ~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~   61 (536)
T 1ju2_A           26 SYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPT   61 (536)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGG
T ss_pred             cccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcC
Confidence            4799999999999999999999 99999999987654

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=97.30  E-value=0.00018  Score=67.06  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..|++|||+|.+|+++|++|++.|++|+|+|+....+
T Consensus         5 ~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            5 YVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            4799999999999999999999999999999987554

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=97.24  E-value=0.0003  Score=65.65  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...|++|||+|.+|+.+|.+|++.|++|+|+|+...
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~   45 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRS   45 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            358999999999999999999999999999999864

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=97.13  E-value=0.00028  Score=67.08  Aligned_cols=35  Identities=29%  Similarity=0.307  Sum_probs=32.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~   64 (260)
                      .+|++|||||.+|+++|.+|++.| .+|+|+|+.+.
T Consensus         6 ~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            6 HFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             EEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             cccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            489999999999999999999998 79999999865

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.02  E-value=0.00044  Score=65.76  Aligned_cols=38  Identities=26%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccCcc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFI   65 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~~~   65 (260)
                      +...|++|||+|.+|+++|.+|++ .|++|+|+|+....
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            345899999999999999999999 79999999998654

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.96  E-value=0.00049  Score=65.43  Aligned_cols=35  Identities=34%  Similarity=0.484  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~   63 (260)
                      ..+|++|||||.+|+++|.+|++. +.+|+|+|+.+
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            358999999999999999999975 79999999987

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.93  E-value=0.0011  Score=51.50  Aligned_cols=39  Identities=21%  Similarity=0.263  Sum_probs=33.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+.++|+|||+|..|...|..|.+.|++|++++++..
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            345568999999999999999999999999999998654

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.92  E-value=0.00056  Score=64.43  Aligned_cols=37  Identities=22%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~G   66 (260)
                      ..|++|||+|.+|+++|++|++. |++|+|+|+.....
T Consensus        13 ~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~   50 (546)
T 2jbv_A           13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR   50 (546)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred             cCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence            47999999999999999999998 89999999986543

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.82  E-value=0.00049  Score=65.20  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=32.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E~~~~~   65 (260)
                      +|++|||||.+|+.+|.+|++ .|++|+|+|+.+..
T Consensus         3 yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~   38 (566)
T 3fim_B            3 FDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSD   38 (566)
T ss_dssp             EEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCC
T ss_pred             cCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcc
Confidence            689999999999999999998 68999999998655

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.79  E-value=0.002  Score=49.24  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.+|+|||.|..|...|..|.+.|++|+++|++..
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~   41 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRT   41 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            457899999999999999999999999999998754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.68  E-value=0.0024  Score=58.93  Aligned_cols=39  Identities=26%  Similarity=0.144  Sum_probs=34.4

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+.++|+|||+|..|...|..|++.|++|+++|++..
T Consensus        50 ~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           50 EAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            334557899999999999999999999999999998765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.64  E-value=0.0028  Score=49.04  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=32.6

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      |.+++|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            356789999999999999999999999999999863

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.58  E-value=0.0019  Score=55.58  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       145 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          145 NKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDEL  180 (312)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccccc
Confidence            478999999999999999999999999999987764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.55  E-value=0.0024  Score=47.97  Aligned_cols=33  Identities=24%  Similarity=0.490  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|...|..|.+.|++|+++|++.
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            689999999999999999999999999999854

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.52  E-value=0.0023  Score=57.47  Aligned_cols=39  Identities=28%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+..+
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~  184 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLER  184 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            468999999999999999999999999999999877544

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.51  E-value=0.003  Score=57.53  Aligned_cols=39  Identities=23%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..++|+|||+|++|+.+|..|++.|.+|+++|+.+.+..
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  186 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG  186 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc
Confidence            457999999999999999999999999999999887654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.46  E-value=0.0032  Score=47.81  Aligned_cols=35  Identities=23%  Similarity=0.317  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|+|+|..|...|..|.++|++|+++|+++.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~   40 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKE   40 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            36899999999999999999999999999998653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=96.35  E-value=0.004  Score=45.24  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      .++|+|+|+|..|...+..|.+.| ++|++++++.
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999999999999 8999999864

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=96.30  E-value=0.0042  Score=57.02  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+|+|+.+.+.
T Consensus       169 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  205 (464)
T 2eq6_A          169 PKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEIL  205 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987654

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.29  E-value=0.0034  Score=57.50  Aligned_cols=38  Identities=21%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+|+|+.+.+..
T Consensus       171 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          171 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            47899999999999999999999999999999887643

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=96.27  E-value=0.0051  Score=53.17  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|++.|++|++++++.
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.26  E-value=0.0048  Score=49.09  Aligned_cols=35  Identities=29%  Similarity=0.262  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~   63 (260)
                      ...+|+|||+|..|...|..|.+. |++|+++|++.
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            356899999999999999999999 99999999865

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.24  E-value=0.0051  Score=56.50  Aligned_cols=38  Identities=26%  Similarity=0.465  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       183 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  220 (478)
T 1v59_A          183 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc
Confidence            47899999999999999999999999999999887654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=96.23  E-value=0.0045  Score=56.51  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+.+|..|++.|.+|+++|+.+.+
T Consensus       167 ~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          167 PKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRI  202 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCcc
Confidence            478999999999999999999999999999998765

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.19  E-value=0.0051  Score=56.15  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  206 (455)
T 1ebd_A          170 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL  206 (455)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            4789999999999999999999999999999987764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.16  E-value=0.006  Score=54.37  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+..|..|++.|.+|+++|+.+.+..
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~  182 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMP  182 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhh
Confidence            57899999999999999999999999999999877543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.13  E-value=0.0049  Score=54.15  Aligned_cols=34  Identities=32%  Similarity=0.507  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+|+|||||..|-.-|..++..|++|+++|.++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            4689999999999999999999999999999764

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.11  E-value=0.0051  Score=52.64  Aligned_cols=35  Identities=29%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+|+|+.+.
T Consensus       152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            47899999999999999999999999999997653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.09  E-value=0.0051  Score=54.73  Aligned_cols=37  Identities=24%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  179 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL  179 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeec
Confidence            3789999999999999999999999999999987653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.02  E-value=0.0078  Score=54.22  Aligned_cols=38  Identities=21%  Similarity=0.402  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  182 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS  182 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccc
Confidence            57899999999999999999999999999999887654

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.01  E-value=0.0067  Score=52.00  Aligned_cols=35  Identities=23%  Similarity=0.382  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|...|..|++.|++|++++++..
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~   38 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTD   38 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            36899999999999999999999999999998753

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.99  E-value=0.0077  Score=45.26  Aligned_cols=34  Identities=35%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|+|+|..|...|..|.+.|++|++++++.
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~   39 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE   39 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3579999999999999999999999999998754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.99  E-value=0.0073  Score=55.15  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       167 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  203 (450)
T 1ges_A          167 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL  203 (450)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchh
Confidence            4789999999999999999999999999999987653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=95.93  E-value=0.0082  Score=50.34  Aligned_cols=42  Identities=33%  Similarity=0.399  Sum_probs=32.5

Q ss_pred             CCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        23 ~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+......++|.|||+|..|.+.|..|++.|++|++++++..
T Consensus        12 ~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~   53 (245)
T 3dtt_A           12 HENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPK   53 (245)
T ss_dssp             -------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChh
Confidence            333455668999999999999999999999999999988654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.92  E-value=0.0059  Score=56.01  Aligned_cols=35  Identities=23%  Similarity=0.328  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|.|||.|.+|+++|..|.++|++|+++|++.
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            35799999999999999999999999999999854

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=95.88  E-value=0.0099  Score=51.64  Aligned_cols=35  Identities=23%  Similarity=0.542  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||.|..|...|..|++.|++|++++++..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            47899999999999999999999999999998764

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.86  E-value=0.0061  Score=55.68  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|.|||.|.+|+++|..|.++|++|+++|.....
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~   40 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSC
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCc
Confidence            478999999999999999999999999999987654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.85  E-value=0.0093  Score=49.11  Aligned_cols=40  Identities=23%  Similarity=0.217  Sum_probs=32.0

Q ss_pred             CCCCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           25 HYGGPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        25 ~~~~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ......++|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   56 (236)
T 3e8x_A           16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEE   56 (236)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChH
Confidence            33455689999998 99999999999999999999988653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.82  E-value=0.0095  Score=54.63  Aligned_cols=37  Identities=35%  Similarity=0.380  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+.
T Consensus       166 ~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l  202 (463)
T 2r9z_A          166 PKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLL  202 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.82  E-value=0.0068  Score=49.71  Aligned_cols=34  Identities=26%  Similarity=0.247  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|...|..|.++|++|+++|++..
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~   34 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRE   34 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            4799999999999999999999999999998654

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.79  E-value=0.01  Score=54.81  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=34.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..++|+|||+|..|+-.|..|++.|.+|+++|+.+.+-.
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            357899999999999999999999999999999887543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=95.78  E-value=0.0081  Score=55.34  Aligned_cols=39  Identities=31%  Similarity=0.516  Sum_probs=35.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ..++|+|||+|.+|+-+|..|++.|.+|+++|+.+.+..
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  223 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT  223 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh
Confidence            457899999999999999999999999999999877654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=95.74  E-value=0.01  Score=51.92  Aligned_cols=37  Identities=24%  Similarity=0.461  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       165 ~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          165 NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGL  201 (369)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3468999999999999999999999999999987654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.72  E-value=0.011  Score=54.20  Aligned_cols=38  Identities=29%  Similarity=0.448  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       178 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          178 PEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            47899999999999999999999999999999887644

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.72  E-value=0.011  Score=51.81  Aligned_cols=34  Identities=21%  Similarity=0.387  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|++.|++|+++++..
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~   36 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA   36 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH
Confidence            4689999999999999999999999999999853

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.72  E-value=0.012  Score=48.10  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=31.8

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ....++|.|||+|..|.+.|..|++.|++|++++++..
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            34457899999999999999999999999999998764

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.72  E-value=0.011  Score=50.09  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|.+.|..|.+.|++|++++++..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            4799999999999999999999999999998754

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=95.69  E-value=0.0093  Score=54.92  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+|+|+.+.+-
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l  221 (482)
T 1ojt_A          185 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLM  221 (482)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccc
Confidence            4789999999999999999999999999999987654

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.68  E-value=0.012  Score=53.87  Aligned_cols=37  Identities=30%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       171 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  207 (464)
T 2a8x_A          171 PKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRAL  207 (464)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.66  E-value=0.011  Score=54.82  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+++|+|||+|..|+..|..|++.|++|++++++.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~   41 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQ   41 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            46899999999999999999999999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.65  E-value=0.012  Score=51.41  Aligned_cols=33  Identities=27%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            689999999999999999999999999999875

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.63  E-value=0.013  Score=52.70  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l  179 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELL  179 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccc
Confidence            5789999999999999999999999999999987754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.60  E-value=0.014  Score=53.07  Aligned_cols=37  Identities=16%  Similarity=0.379  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  185 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVL  185 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccc
Confidence            5789999999999999999999999999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.59  E-value=0.013  Score=54.19  Aligned_cols=38  Identities=21%  Similarity=0.383  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       174 ~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  211 (492)
T 3ic9_A          174 PKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN  211 (492)
T ss_dssp             CSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc
Confidence            47899999999999999999999999999999887643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=95.58  E-value=0.015  Score=53.64  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++.++|+|||+|..|...|..|+++|++|+++|++.
T Consensus        35 ~~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           35 QPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            345689999999999999999999999999999764

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.51  E-value=0.013  Score=50.70  Aligned_cols=34  Identities=26%  Similarity=0.316  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||+|..|.+.|..|++.|++|++++++.
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.49  E-value=0.016  Score=49.52  Aligned_cols=37  Identities=22%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            3478999999999999999999999999999987654

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=95.49  E-value=0.014  Score=50.07  Aligned_cols=33  Identities=30%  Similarity=0.540  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|.+.|++|++++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            589999999999999999999999999998854

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=95.48  E-value=0.015  Score=53.45  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=34.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ..++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  221 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVL  221 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccc
Confidence            34789999999999999999999999999999987653

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.48  E-value=0.014  Score=51.96  Aligned_cols=34  Identities=35%  Similarity=0.539  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|.-|.+.|..|++.|++|+++++++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~   62 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYES   62 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4789999999999999999999999999999864

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.43  E-value=0.013  Score=54.28  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=33.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHC-CC-cEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQ-GH-EVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~-G~-~v~v~E~~~~   64 (260)
                      ++.++|+|||+|.-|+..|..|+++ |+ +|++++++..
T Consensus        16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            4457999999999999999999999 99 9999998765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.41  E-value=0.015  Score=53.80  Aligned_cols=37  Identities=19%  Similarity=0.261  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  212 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL  212 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccC
Confidence            5789999999999999999999999999999987653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.41  E-value=0.019  Score=52.27  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..++|+|||+|..|+-.|..|++.|.+|+++++.+.+...
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            3468999999999999999999999999999998876543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.37  E-value=0.018  Score=52.04  Aligned_cols=36  Identities=28%  Similarity=0.456  Sum_probs=32.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|||+|..|+.+|..+...|.+|+++|++..
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  224 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPA  224 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457999999999999999999999999999998764

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=95.37  E-value=0.017  Score=49.32  Aligned_cols=34  Identities=29%  Similarity=0.478  Sum_probs=31.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|...|..|++.|++|++++++..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            6899999999999999999999999999998754

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=95.37  E-value=0.013  Score=50.67  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||+|..|-..|..|+ +|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            579999999999999999999 999999999865

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.37  E-value=0.011  Score=54.08  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       177 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  213 (470)
T 1dxl_A          177 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV  213 (470)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccc
Confidence            4789999999999999999999999999999987654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.34  E-value=0.017  Score=50.66  Aligned_cols=34  Identities=24%  Similarity=0.310  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|...|..|++.|++|++++++.
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~   37 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   37 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            3689999999999999999999999999998853

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.33  E-value=0.013  Score=50.93  Aligned_cols=33  Identities=33%  Similarity=0.555  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            689999999999999999999999999999865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.28  E-value=0.017  Score=49.28  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       144 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          144 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            478999999999999999999999999999987754

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.27  E-value=0.016  Score=52.77  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~  184 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK  184 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc
Confidence            46899999999999999999999999999999887643

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.27  E-value=0.019  Score=52.43  Aligned_cols=36  Identities=17%  Similarity=0.384  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+
T Consensus       176 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~  211 (467)
T 1zk7_A          176 PERLAVIGSSVVALELAQAFARLGSKVTVLARNTLF  211 (467)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCcc
Confidence            478999999999999999999999999999998764

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.25  E-value=0.02  Score=49.71  Aligned_cols=34  Identities=29%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            3689999999999999999999999  999998864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.25  E-value=0.017  Score=52.99  Aligned_cols=33  Identities=24%  Similarity=0.522  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|+..|..|++.|++|++++++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            689999999999999999999999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.24  E-value=0.02  Score=52.31  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       174 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  210 (468)
T 2qae_A          174 PKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCA  210 (468)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCccc
Confidence            4789999999999999999999999999999987654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.23  E-value=0.019  Score=52.26  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+-.
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          149 AKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            47899999999999999999999999999999876543

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.22  E-value=0.018  Score=49.70  Aligned_cols=37  Identities=30%  Similarity=0.340  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            3478999999999999999999999999999988754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=95.20  E-value=0.022  Score=50.15  Aligned_cols=33  Identities=27%  Similarity=0.365  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++|+|||||..|.+.|..|+..|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            589999999999999999999998 999998765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.20  E-value=0.031  Score=48.41  Aligned_cols=36  Identities=33%  Similarity=0.463  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|.|||.|..|...|..|++.|++|++++++..
T Consensus         8 ~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   43 (306)
T 3l6d_A            8 FEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPG   43 (306)
T ss_dssp             CSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            347899999999999999999999999999998754

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.17  E-value=0.022  Score=53.41  Aligned_cols=36  Identities=17%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       177 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          177 AGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            357999999999999999999999999999999875

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=95.15  E-value=0.018  Score=50.19  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|.|||.|..|...|..|++.|++|++++++..
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   65 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPA   65 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            347999999999999999999999999999998753

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=95.14  E-value=0.022  Score=52.21  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.+|+|||.|.-|+..|..|+++|++|++++++..
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            357899999999999999999999999999998754

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.09  E-value=0.019  Score=51.52  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|||+|..|+.+|..+...|.+|++++++..
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~  218 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPE  218 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGG
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999998753

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.09  E-value=0.024  Score=50.90  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=34.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+-
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l  188 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVL  188 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchh
Confidence            5789999999999999999999999999999988764

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.05  E-value=0.026  Score=50.54  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++|+.+.+..
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~  179 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMA  179 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchh
Confidence            57899999999999999999999999999999877643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.03  E-value=0.03  Score=49.07  Aligned_cols=34  Identities=21%  Similarity=0.465  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|||||..|.+.|..|+..|+ +|.++|.+.
T Consensus         4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            4689999999999999999999998 999998754

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=95.02  E-value=0.022  Score=49.36  Aligned_cols=36  Identities=25%  Similarity=0.325  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       155 ~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          155 DQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            478999999999999999999999999999987654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.02  E-value=0.018  Score=49.54  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|.-|.+.|..|++.|++|+++.++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            689999999999999999999999999998864

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.01  E-value=0.023  Score=48.66  Aligned_cols=36  Identities=31%  Similarity=0.404  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       145 ~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          145 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  180 (320)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcc
Confidence            478999999999999999999999999999987653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=95.01  E-value=0.025  Score=49.49  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|.|||+|.-|.+.|..|.+.|++|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            479999999999999999999999999999875

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.00  E-value=0.026  Score=51.72  Aligned_cols=37  Identities=19%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            4789999999999999999999999999999977643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=95.00  E-value=0.025  Score=52.86  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       151 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          151 VEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV  186 (565)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCcc
Confidence            468999999999999999999999999999998765

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=95.00  E-value=0.023  Score=52.70  Aligned_cols=35  Identities=31%  Similarity=0.456  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||+|..|.+.|..|+++|++|+++|++..
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   39 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAE   39 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            46899999999999999999999999999998653

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=94.99  E-value=0.023  Score=48.93  Aligned_cols=36  Identities=28%  Similarity=0.372  Sum_probs=32.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       152 ~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          152 GKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             TCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            478999999999999999999999999999987654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.98  E-value=0.022  Score=49.92  Aligned_cols=35  Identities=26%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~-aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||.|.+|++ +|..|.++|++|+++|+...
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            368999999999996 78889999999999998753

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=94.96  E-value=0.022  Score=52.43  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++|+.+.+.
T Consensus       198 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  234 (491)
T 3urh_A          198 PASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTIL  234 (491)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccc
Confidence            4789999999999999999999999999999987664

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.91  E-value=0.029  Score=51.34  Aligned_cols=38  Identities=26%  Similarity=0.203  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.+-.
T Consensus       172 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  209 (466)
T 3l8k_A          172 PQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALI  209 (466)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCC
Confidence            47899999999999999999999999999999876543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=94.89  E-value=0.033  Score=48.91  Aligned_cols=36  Identities=22%  Similarity=0.279  Sum_probs=32.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      |..++|+|||||..|.+.|+.|+..|+ ++.++|.+.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            456799999999999999999999999 999999865

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.88  E-value=0.019  Score=53.97  Aligned_cols=36  Identities=17%  Similarity=0.345  Sum_probs=33.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|||+|.+|+-.|..|++.+.+|++|++.+.
T Consensus       184 ~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          184 TGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            347899999999999999999999999999999875

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=94.86  E-value=0.033  Score=48.90  Aligned_cols=33  Identities=30%  Similarity=0.444  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++|+|||||..|.+.|..|+..|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            689999999999999999999999 999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.85  E-value=0.024  Score=49.39  Aligned_cols=34  Identities=41%  Similarity=0.540  Sum_probs=29.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|.-|.+.|..|++.|++|+++ +.+
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            4579999999999999999999999999999 543

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.85  E-value=0.021  Score=53.77  Aligned_cols=36  Identities=17%  Similarity=0.402  Sum_probs=33.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|||+|.+|+-+|..|++.|.+|++|++.+.
T Consensus       190 ~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          190 TGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            457999999999999999999999999999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=94.84  E-value=0.025  Score=51.93  Aligned_cols=36  Identities=14%  Similarity=0.118  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       197 ~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~  232 (464)
T 2xve_A          197 DKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAP  232 (464)
T ss_dssp             TSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCC
T ss_pred             CCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCC
Confidence            478999999999999999999999999999988764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.82  E-value=0.045  Score=47.16  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=31.2

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.||| +|..|.+.|..|++.|++|++++++..
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            5899999 999999999999999999999987653

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.82  E-value=0.045  Score=48.17  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +.++|+|||+|..|.+.|+.|+..|+  ++.++|.+.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~   56 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVME   56 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCH
Confidence            56899999999999999999999998  899998754

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.81  E-value=0.02  Score=49.34  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||.|..|...|..|++.|++|++++++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            46899999999999999999999999999998765

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.79  E-value=0.03  Score=48.56  Aligned_cols=33  Identities=27%  Similarity=0.587  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|+|||||..|.+.|+.|+..|+  +|.++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            489999999999999999999999  999998764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=94.77  E-value=0.026  Score=49.04  Aligned_cols=38  Identities=13%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +..+.++|+|||||..|.+.|+.|+.+|+  ++.++|.+.
T Consensus        10 ~~~~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           10 ENKTVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            33445799999999999999999999998  999999876

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.75  E-value=0.029  Score=48.18  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       173 ~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          173 NKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            478999999999999999999999999999987754

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.75  E-value=0.032  Score=50.79  Aligned_cols=38  Identities=32%  Similarity=0.372  Sum_probs=34.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus       147 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  184 (452)
T 3oc4_A          147 SQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLP  184 (452)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcccc
Confidence            47899999999999999999999999999999887643

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=94.74  E-value=0.028  Score=48.96  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|+ +|+++|.+.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            689999999999999999999998 999998864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.74  E-value=0.022  Score=49.47  Aligned_cols=31  Identities=42%  Similarity=0.744  Sum_probs=29.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ++|+|||+|..|.+.|..|.+.|++|+++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            3799999999999999999999999999998

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.72  E-value=0.021  Score=51.85  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=32.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~   65 (260)
                      ..++|+|||+|.+|+-+|..|++.  |.+|+++++.+.+
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            357899999999999999999999  8999999998753

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=94.72  E-value=0.024  Score=48.86  Aligned_cols=36  Identities=25%  Similarity=0.435  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       152 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQF  187 (335)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCcc
Confidence            478999999999999999999999999999987653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.70  E-value=0.04  Score=48.19  Aligned_cols=34  Identities=32%  Similarity=0.491  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ..++|+|||+|..|.+.|+.|+..|+ +++++|.+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            35789999999999999999999999 99999987

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.70  E-value=0.023  Score=51.85  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|+..|..|++.|++|++++++.
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999998853

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=94.70  E-value=0.056  Score=48.65  Aligned_cols=42  Identities=31%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHCCC---cEEEEcccC-ccccc
Q 024958           27 GGPKLKVAIIGA-GLAGMSTAVELLDQGH---EVDIYESRS-FIGGK   68 (260)
Q Consensus        27 ~~~~~~v~VIGa-G~aGl~aA~~L~~~G~---~v~v~E~~~-~~GG~   68 (260)
                      ..+..+|+|||| |.+|+.|+..+...|.   +|+++|.+. ..||+
T Consensus       211 g~~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          211 GARKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             TCCCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            456689999999 9999999999999998   999999876 44543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.70  E-value=0.042  Score=46.45  Aligned_cols=35  Identities=34%  Similarity=0.386  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|+|+|..|...+..|.++|++|+++.++..
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            46899999999999999999999999999988643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=94.68  E-value=0.038  Score=45.28  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|.+.|..|.+.|++|++++++..
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~   62 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPK   62 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36899999999999999999999999999988643

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.67  E-value=0.02  Score=47.07  Aligned_cols=37  Identities=24%  Similarity=0.165  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEE-EcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDI-YESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v-~E~~~~   64 (260)
                      +..++|.|||+|..|.+.|..|.+.|++|++ ++++..
T Consensus        21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~   58 (220)
T 4huj_A           21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPA   58 (220)
T ss_dssp             GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGG
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHH
Confidence            3347899999999999999999999999998 887653

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.66  E-value=0.022  Score=48.74  Aligned_cols=34  Identities=21%  Similarity=0.458  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||.|..|...|..|++.|++|++++++..
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            4799999999999999999999999999998764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=94.66  E-value=0.034  Score=49.44  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|.|||.|..|...|..|++.|++|++++++..
T Consensus        21 ~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~   56 (358)
T 4e21_A           21 QSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVN   56 (358)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            347899999999999999999999999999998643

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.65  E-value=0.048  Score=47.10  Aligned_cols=35  Identities=29%  Similarity=0.549  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|.|||+|..|...|..|.+.|++|++++++..
T Consensus        30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~   64 (316)
T 2uyy_A           30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAE   64 (316)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGG
T ss_pred             CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence            46899999999999999999999999999998654

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.62  E-value=0.03  Score=48.50  Aligned_cols=32  Identities=38%  Similarity=0.531  Sum_probs=29.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|+ .|++|+++.++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            68999999999999999999 999999998865

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.60  E-value=0.029  Score=51.26  Aligned_cols=34  Identities=29%  Similarity=0.439  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|..|+..|..|++ |++|++++++..
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~   69 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQA   69 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHH
Confidence            4689999999999999999998 999999998643

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.58  E-value=0.032  Score=51.64  Aligned_cols=37  Identities=19%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.   |.+|+++|+.+.+-
T Consensus       191 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  230 (495)
T 2wpf_A          191 PRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL  230 (495)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc
Confidence            47899999999999999999999   99999999987653

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.58  E-value=0.038  Score=49.93  Aligned_cols=36  Identities=33%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|||+|..|+.++..+...|.+|++++++..
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~  206 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPE  206 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGG
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457899999999999999999999999999998754

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.58  E-value=0.039  Score=50.49  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.+.
T Consensus       180 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l  216 (476)
T 3lad_A          180 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL  216 (476)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC
Confidence            4789999999999999999999999999999987653

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.58  E-value=0.014  Score=53.77  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|+|+|-.|...|..|.++|++|+|+|++..
T Consensus         2 ~~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~   37 (461)
T 4g65_A            2 NAMKIIILGAGQVGGTLAENLVGENNDITIVDKDGD   37 (461)
T ss_dssp             CCEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHH
T ss_pred             CcCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            357999999999999999999999999999998754

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.57  E-value=0.041  Score=45.73  Aligned_cols=35  Identities=14%  Similarity=0.265  Sum_probs=31.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ...++|+|||+|-.|...+..|.+.|.+|+|++..
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            44689999999999999999999999999999864

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.56  E-value=0.029  Score=48.16  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            478999999999999999999999999999987654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.50  E-value=0.022  Score=48.89  Aligned_cols=35  Identities=17%  Similarity=0.421  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|-.|...+..|.+.|.+|+|++...
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            35789999999999999999999999999998754

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.48  E-value=0.035  Score=51.26  Aligned_cols=37  Identities=19%  Similarity=0.196  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.   |.+|+++|+.+.+.
T Consensus       187 ~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l  226 (490)
T 1fec_A          187 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL  226 (490)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc
Confidence            47899999999999999999999   99999999988654

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=94.47  E-value=0.036  Score=51.27  Aligned_cols=37  Identities=19%  Similarity=0.407  Sum_probs=32.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      -+.+++|.|||+|..|.+.|..|+++|++|++++++.
T Consensus        12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~   48 (480)
T 2zyd_A           12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSR   48 (480)
T ss_dssp             ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            3567899999999999999999999999999998864

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.46  E-value=0.033  Score=50.58  Aligned_cols=36  Identities=8%  Similarity=-0.079  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+ |+++++.+.+
T Consensus       212 ~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          212 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CCEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            47899999999999999999999998 9999987654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.45  E-value=0.036  Score=48.29  Aligned_cols=34  Identities=29%  Similarity=0.296  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      .++|.|||.|..|.+.|..|++.| ++|++++++.
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            368999999999999999999999 9999999875

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.45  E-value=0.016  Score=44.25  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|...+..|.+.|++|++++++.
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            5789999999999999999999999999998754

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.44  E-value=0.049  Score=49.88  Aligned_cols=34  Identities=26%  Similarity=0.439  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+|+|||.|-.||..|..|+++|++|+.||-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            4689999999999999999999999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=94.44  E-value=0.04  Score=51.25  Aligned_cols=36  Identities=8%  Similarity=0.117  Sum_probs=33.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      ++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l  250 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK  250 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccc
Confidence            789999999999999999999999999999987653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=94.41  E-value=0.046  Score=47.62  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .++|.|||+|..|.+.|..|++.|+  +|++++++.
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            4789999999999999999999999  999999875

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.37  E-value=0.034  Score=48.26  Aligned_cols=33  Identities=27%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      .++|.|||.|..|.+.|..|++.|+ +|++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            4789999999999999999999999 99999985

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=94.34  E-value=0.042  Score=51.91  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus       286 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          286 PGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            368999999999999999999999999999986

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=94.34  E-value=0.049  Score=48.79  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|||+|..|+.++..+...|.+|+++++...
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~  206 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA  206 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457999999999999999999999999999998653

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.33  E-value=0.045  Score=44.29  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=30.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+||| +|..|...|..|.+.|++|++++++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~   34 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3799999 99999999999999999999998764

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.32  E-value=0.047  Score=51.45  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+..
T Consensus       187 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  224 (588)
T 3ics_A          187 PRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMP  224 (588)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccc
Confidence            47899999999999999999999999999999876543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.32  E-value=0.057  Score=47.27  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      |..++|+|||+|..|.+.|+.|+..|+ ++.++|.+.
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            445799999999999999999999988 999998765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=94.31  E-value=0.047  Score=50.38  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       182 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l  218 (499)
T 1xdi_A          182 PDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVL  218 (499)
T ss_dssp             CSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            4789999999999999999999999999999987654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.30  E-value=0.053  Score=50.91  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +++++|||||..|+-.|..+++.|.+|+|+++...
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            47899999999999999999999999999987544

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=94.30  E-value=0.044  Score=45.87  Aligned_cols=35  Identities=17%  Similarity=0.314  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~~   64 (260)
                      .++|.|||+|..|.+.|..|.+.|    ++|++++++..
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            468999999999999999999999    79999998764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.30  E-value=0.035  Score=51.32  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+..|..|++.  |++|++++++
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            46899999999999999999998  7999999875

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=94.29  E-value=0.032  Score=50.38  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|+..|..|++ |++|++++++.
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            479999999999999999999 99999998854

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=94.28  E-value=0.05  Score=47.27  Aligned_cols=33  Identities=30%  Similarity=0.562  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.  |++|+++|.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4799999999999999999985  78999999865

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.28  E-value=0.065  Score=48.57  Aligned_cols=39  Identities=15%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           26 YGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        26 ~~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++.++|.|||+|..|.-.+..+++.|++|.+++..+.
T Consensus        31 ~~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~   69 (419)
T 4e4t_A           31 PILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPA   69 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            456778999999999999999999999999999986543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=94.27  E-value=0.026  Score=49.59  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-------~~v~v~E~~~~   64 (260)
                      ..++|+|||+|..|.+.|..|++.|       ++|++++++..
T Consensus         7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            3468999999999999999999999       99999998765

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=94.26  E-value=0.051  Score=50.37  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=32.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|.|||.|..|.+.|..|++.|++|++++++..
T Consensus         3 ~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~   38 (484)
T 4gwg_A            3 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   38 (484)
T ss_dssp             CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            457899999999999999999999999999998753

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.25  E-value=0.031  Score=48.29  Aligned_cols=34  Identities=29%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .||.+||-|..|...|..|.++|++|++|+++..
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~   39 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTAS   39 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-----
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            5899999999999999999999999999998654

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=94.24  E-value=0.05  Score=48.08  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=31.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||.|..|-+.|..|.+.|++|++++++.
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4689999999999999999999999999999875

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=94.21  E-value=0.048  Score=53.06  Aligned_cols=34  Identities=38%  Similarity=0.406  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||+|..|...|..|++.|++|+++|++.
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            4689999999999999999999999999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.10  E-value=0.04  Score=51.32  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       355 ~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l  390 (521)
T 1hyu_A          355 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  390 (521)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCccc
Confidence            478999999999999999999999999999987654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.08  E-value=0.067  Score=45.72  Aligned_cols=35  Identities=17%  Similarity=0.252  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC---cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH---EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~---~v~v~E~~~~   64 (260)
                      .++|.|||+|..|.+.|..|.+.|+   +|++++++..
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~   40 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLD   40 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHH
Confidence            4789999999999999999999999   9999998754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=94.06  E-value=0.06  Score=46.76  Aligned_cols=33  Identities=30%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++|+|||||..|.+.|+.|+..|+ ++.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            689999999999999999999997 999999754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.06  E-value=0.071  Score=42.27  Aligned_cols=34  Identities=35%  Similarity=0.520  Sum_probs=31.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+|| |..|...+..|.++|++|+++.++..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~   38 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChh
Confidence            68999998 99999999999999999999988653

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=94.04  E-value=0.041  Score=48.06  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       163 ~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEF  198 (360)
T ss_dssp             TCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCC
Confidence            468999999999999999999999999999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=94.04  E-value=0.054  Score=46.03  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       154 ~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~  189 (323)
T 3f8d_A          154 NRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTF  189 (323)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCC
Confidence            478999999999999999999999999999987654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.01  E-value=0.051  Score=49.28  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=32.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+|+|||.|..|...|..|.+.|++|+++|++..
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~   38 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPD   38 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH
Confidence            46799999999999999999999999999998754

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=94.00  E-value=0.064  Score=45.59  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=32.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +||+|.|| |..|-..+.+|.++|++|+++-|++..+
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~   37 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG   37 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC
Confidence            58999998 9999999999999999999998876554

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=93.97  E-value=0.06  Score=45.54  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|.+.|..|.+.|++|++++++.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            479999999999999999999999999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.97  E-value=0.073  Score=45.20  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|+|+|-.|.++|..|.+.|.+|+|+.+..
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~  152 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV  152 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCH
Confidence            34789999999999999999999999999998753

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=93.97  E-value=0.047  Score=47.63  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~   35 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCCh
Confidence            479999999999999999999999  999998763

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=93.94  E-value=0.067  Score=49.71  Aligned_cols=33  Identities=21%  Similarity=0.237  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus       210 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          210 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            467999999999999999999999999999974

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=93.94  E-value=0.068  Score=49.12  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus       185 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          185 PGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            4689999999999999999999999999999864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=93.93  E-value=0.051  Score=45.51  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      ++|.|||+|..|.+.|..|.+.| ++|++++++.
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~   34 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCH
Confidence            47999999999999999999999 9999998864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=93.93  E-value=0.064  Score=46.54  Aligned_cols=35  Identities=26%  Similarity=0.495  Sum_probs=30.3

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      +..++|+|+|| |..|...+..|.++|++|+++.+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   60 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF   60 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34578999998 999999999999999999999874

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.93  E-value=0.018  Score=48.22  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      +.++|.|||+|..|-+.|..|+++|++|+.+++.
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CCcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            4578999999999999999999999999999875

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.92  E-value=0.057  Score=45.75  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus       147 ~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          147 NKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             TSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            478999999999999999999999999999987754

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=93.92  E-value=0.064  Score=47.61  Aligned_cols=33  Identities=30%  Similarity=0.510  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+|+|+|+|..|+.++..|+..|.+|++++++.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            789999999999999999999999999998764

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=93.92  E-value=0.039  Score=47.41  Aligned_cols=32  Identities=28%  Similarity=0.314  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC-----C-CcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ-----G-HEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~-----G-~~v~v~E~~   62 (260)
                      ++|.|||+|..|.+.|..|++.     | ++|+++++.
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~   46 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARG   46 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcH
Confidence            5899999999999999999999     9 999999873

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=93.92  E-value=0.06  Score=46.91  Aligned_cols=35  Identities=23%  Similarity=0.350  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC----CcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG----HEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G----~~v~v~E~~~   63 (260)
                      ..++|.|||+|..|.+.|..|.+.|    ++|++++++.
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            3468999999999999999999999    8999999865

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=93.92  E-value=0.072  Score=45.50  Aligned_cols=35  Identities=31%  Similarity=0.363  Sum_probs=31.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|-+|-++++.|.+.|.+|+|+.|...
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~  152 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSR  152 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            57899999999999999999999999999987653

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=93.91  E-value=0.08  Score=51.61  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.0

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+-++|.|||||..|-..|+.++..|++|+++|.++
T Consensus       313 ~~~i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          313 AQPVSSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cccccEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            3455899999999999999999999999999999764

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.88  E-value=0.057  Score=49.35  Aligned_cols=38  Identities=32%  Similarity=0.439  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG   67 (260)
                      .++|+|||+|.+|+-.|..|++. |.+|+++|+.+.+..
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            47899999999999999999999 999999999876543

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=93.85  E-value=0.051  Score=52.79  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|.|||+|..|...|..|++.|++|+++|++.
T Consensus       313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            34689999999999999999999999999999764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.84  E-value=0.051  Score=46.32  Aligned_cols=34  Identities=29%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|.+.|..|.+.|++|++++++..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~   34 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPD   34 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3799999999999999999999999999988653

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.83  E-value=0.079  Score=48.54  Aligned_cols=37  Identities=22%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~   65 (260)
                      ..++|+|||+|.+|+-+|..+.+.|. +|+++++.+..
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            45789999999999999999999997 59999987653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.82  E-value=0.073  Score=42.75  Aligned_cols=33  Identities=39%  Similarity=0.567  Sum_probs=30.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|+|| |..|...+..|.++|++|+++.|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            47999996 9999999999999999999998874

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=93.79  E-value=0.069  Score=46.60  Aligned_cols=34  Identities=35%  Similarity=0.466  Sum_probs=30.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +++|+|||+|..|.+.|+.|+..|+  ++.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4699999999999999999999998  899998754

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.78  E-value=0.068  Score=47.07  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=31.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|.-+++.+++.|++|++++.++.
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            6899999999999999999999999999997654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=93.72  E-value=0.035  Score=49.13  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|+|||+|..|.+.|..|++.|++|++++++.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   48 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   48 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            89999999999999999999999999998754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=93.70  E-value=0.065  Score=47.67  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            4789999999999999999999999999999764

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.69  E-value=0.066  Score=48.15  Aligned_cols=35  Identities=26%  Similarity=0.483  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ...+|+|+|||.+|+.+|..|...|. +|+++|++.
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            34799999999999999999999998 999999874

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=93.68  E-value=0.076  Score=48.40  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=33.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++++|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       170 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~  205 (463)
T 4dna_A          170 PESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEI  205 (463)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcc
Confidence            578999999999999999999999999999998764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.66  E-value=0.07  Score=46.84  Aligned_cols=34  Identities=41%  Similarity=0.588  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|+.|+..|+  ++.++|.+.
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~   40 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNK   40 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecch
Confidence            4789999999999999999999997  899998753

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=93.64  E-value=0.073  Score=46.13  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=30.8

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++|+|.|| |..|...+..|.++|++|+++.+...
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   54 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPS   54 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCC
Confidence            34578999998 99999999999999999999988764

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=93.62  E-value=0.074  Score=44.32  Aligned_cols=34  Identities=15%  Similarity=0.297  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC----cEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH----EVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~----~v~v~E~~~~   64 (260)
                      ++|.|||+|..|.+.|..|.+.|+    +|.+++++..
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~   40 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTA   40 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHH
Confidence            689999999999999999999998    9999998643

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.61  E-value=0.077  Score=49.30  Aligned_cols=35  Identities=20%  Similarity=0.347  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+++|.|||+|..|.+.|..|+++|++|+++++..
T Consensus         9 ~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A            9 MSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999998864

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=93.61  E-value=0.074  Score=45.05  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|.|||+|..|.+.|..|.+.|+  +|++++++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            479999999999999999999998  899998864

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.61  E-value=0.085  Score=46.41  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=31.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .+.++|+|||||..|.+.|+.|+.+|+  ++.++|.+.
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~   54 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIE   54 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCCh
Confidence            456899999999999999999999998  899998753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.61  E-value=0.079  Score=48.62  Aligned_cols=36  Identities=19%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.+.+
T Consensus       191 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  226 (484)
T 3o0h_A          191 PKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLI  226 (484)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCcc
Confidence            578999999999999999999999999999998764

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=93.59  E-value=0.05  Score=48.39  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-------~~v~v~E~~~~   64 (260)
                      ++|+|||+|..|.+.|..|++.|       ++|++++++..
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            58999999999999999999999       99999998654

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=93.59  E-value=0.059  Score=46.63  Aligned_cols=33  Identities=30%  Similarity=0.484  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|..|++.|  .+|++++++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            58999999999999999999999  7999998864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.57  E-value=0.064  Score=45.13  Aligned_cols=35  Identities=14%  Similarity=0.043  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|+|||..|...+..|.++|++|+++.++..
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPD   39 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChh
Confidence            36899999999999999999999999999988754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.53  E-value=0.077  Score=45.19  Aligned_cols=33  Identities=30%  Similarity=0.431  Sum_probs=30.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+ |..|.+.|..|.+.|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            58999999 9999999999999999999999864

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=93.49  E-value=0.06  Score=45.23  Aligned_cols=34  Identities=26%  Similarity=0.467  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCc-EEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHE-VDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~-v~v~E~~~   63 (260)
                      .++|.|||+|..|...|..|.+.|++ |.+++++.
T Consensus        10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            36899999999999999999999999 89998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.48  E-value=0.076  Score=47.65  Aligned_cols=34  Identities=32%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ...+|+|+|||.+|..+|..|...|. +|+++|+.
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            45799999999999999999999998 89999986

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=93.43  E-value=0.087  Score=47.07  Aligned_cols=36  Identities=28%  Similarity=0.319  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|+|||+|..|+.+|..++..|.+|++++++.
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            345789999999999999999999999999999764

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=93.41  E-value=0.089  Score=48.47  Aligned_cols=34  Identities=21%  Similarity=0.467  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +++|.|||+|..|...|..|++.|++|++++++.
T Consensus         5 ~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~   38 (474)
T 2iz1_A            5 QANFGVVGMAVMGKNLALNVESRGYTVAIYNRTT   38 (474)
T ss_dssp             TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            4689999999999999999999999999998864

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=93.38  E-value=0.086  Score=48.69  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|...|..|++.|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            589999999999999999999999999998864

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=93.35  E-value=0.099  Score=46.21  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      ..+||+|||+ |..|.++|+.+...|.  ++.++|.+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4579999998 9999999999999995  89999875

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=93.35  E-value=0.062  Score=46.47  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|+|||||..|.+.|+.|+..|+  ++.++|.+.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            489999999999999999999998  899998754

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.33  E-value=0.094  Score=42.31  Aligned_cols=33  Identities=36%  Similarity=0.528  Sum_probs=30.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|+|| |..|...+..|.++|++|+++.++.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDP   34 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            47999998 9999999999999999999998864

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=93.30  E-value=0.075  Score=44.52  Aligned_cols=31  Identities=32%  Similarity=0.353  Sum_probs=28.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ++|.|||+|..|.+.|..|.+.|++|+++++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            3799999999999999999999999999876

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=93.29  E-value=0.072  Score=45.51  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||+|..|...|..|.+.|++|++++++.
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            3689999999999999999999999999998864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.29  E-value=0.067  Score=45.67  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|...|..|.+.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            589999999999999999999999999998864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.27  E-value=0.069  Score=45.41  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|-+|.++|+.|.+.|.+|+|+.|..
T Consensus       119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~  152 (272)
T 1p77_A          119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF  152 (272)
T ss_dssp             TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4689999999999999999999999999998753

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=93.27  E-value=0.092  Score=45.32  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .++|+|||+|.+|.++|..|.+.|. +|+|+.+..
T Consensus       141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~  175 (297)
T 2egg_A          141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV  175 (297)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH
T ss_pred             CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            4789999999999999999999998 999998763

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=93.27  E-value=0.085  Score=46.00  Aligned_cols=34  Identities=35%  Similarity=0.431  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      ..++|+|||||..|.+.|+.|+..|+  ++.++|.+
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            45799999999999999999999885  89999864

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=93.23  E-value=0.091  Score=48.50  Aligned_cols=33  Identities=21%  Similarity=0.612  Sum_probs=30.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|...|..|+++|++|++++++.
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~   34 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            589999999999999999999999999998853

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=93.21  E-value=0.066  Score=45.34  Aligned_cols=33  Identities=27%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|..|...|..|.+ |++|++++++..
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~   34 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFE   34 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTH
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence            479999999999999999999 999999988643

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.14  E-value=0.076  Score=45.33  Aligned_cols=36  Identities=31%  Similarity=0.350  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.+
T Consensus       154 ~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~  189 (332)
T 3lzw_A          154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKF  189 (332)
T ss_dssp             TCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcC
Confidence            478999999999999999999999999999987754

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.13  E-value=0.11  Score=47.66  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|||+|..|+-.|..|++.|.+|+++++.
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          187 PGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            468999999999999999999999999999974

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=93.12  E-value=0.11  Score=44.14  Aligned_cols=35  Identities=29%  Similarity=0.476  Sum_probs=32.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|.|| |..|...+..|.++|++|+++.+...
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            578999999 99999999999999999999988654

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=93.07  E-value=0.096  Score=45.98  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      ...++|+|||||..|.+.|+.|+..|+  ++.++|.+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            345799999999999999999999988  89999874

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=93.04  E-value=0.11  Score=44.63  Aligned_cols=35  Identities=29%  Similarity=0.399  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|.|||+|..|..+|..|...|.+|+++++..
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            45789999999999999999999999999999764

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=92.98  E-value=0.089  Score=45.91  Aligned_cols=33  Identities=33%  Similarity=0.460  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|+|||+|..|.+.|+.|+..|+  ++.++|.+.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            489999999999999999999987  899999865

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=92.97  E-value=0.059  Score=49.56  Aligned_cols=33  Identities=24%  Similarity=0.334  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~   63 (260)
                      ++|+|||+|..|+..|..|++.  |++|++++++.
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            6899999999999999999999  89999998753

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=92.95  E-value=0.071  Score=46.17  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.+||-|..|...|.+|.++|++|+++++...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~   37 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQS   37 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence            5899999999999999999999999999998653

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=92.93  E-value=0.16  Score=45.14  Aligned_cols=37  Identities=22%  Similarity=0.357  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|+|||+|..|...+..+.+.|++|.+++....
T Consensus        12 ~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           12 LPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCC
Confidence            4568999999999999999999999999999987643

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.89  E-value=0.055  Score=48.50  Aligned_cols=30  Identities=23%  Similarity=0.333  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCcEEEEc
Q 024958           31 LKVAIIGAGLAGMSTAVELLD-QGHEVDIYE   60 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~-~G~~v~v~E   60 (260)
                      ++|+|||+|..|.+.|..|++ .|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            589999999999999999988 499999998

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=92.87  E-value=0.094  Score=44.61  Aligned_cols=34  Identities=21%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|.+.|.+|++++++.
T Consensus       129 ~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~  162 (275)
T 2hk9_A          129 EKSILVLGAGGASRAVIYALVKEGAKVFLWNRTK  162 (275)
T ss_dssp             GSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSH
T ss_pred             CCEEEEECchHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4689999999999999999999999999998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=92.83  E-value=0.13  Score=45.21  Aligned_cols=34  Identities=38%  Similarity=0.449  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|..|.+.|..|++.|++|++++++.
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            4689999999999999999999999999998865

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.81  E-value=0.13  Score=44.18  Aligned_cols=35  Identities=31%  Similarity=0.430  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|.|||+|..|...|..|...|.+|+++++..
T Consensus       154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            45789999999999999999999999999998764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=92.79  E-value=0.12  Score=44.82  Aligned_cols=36  Identities=33%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      |..++|+|+|| |..|...+..|.++|++|.++.++.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence            34578999999 9999999999999999999998865

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=92.76  E-value=0.1  Score=44.71  Aligned_cols=35  Identities=23%  Similarity=0.201  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      .++|+|||+|-+|.++|+.|.+.|. +|+|+.|...
T Consensus       117 ~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~  152 (277)
T 3don_A          117 DAYILILGAGGASKGIANELYKIVRPTLTVANRTMS  152 (277)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence            4789999999999999999999998 9999988754

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.73  E-value=0.052  Score=44.74  Aligned_cols=35  Identities=17%  Similarity=0.101  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|+|+|..|...|..|.+.|+ |+++|++..
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~   42 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV-FVLAEDENV   42 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHH
Confidence            45789999999999999999999999 999998754

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=92.69  E-value=0.17  Score=43.34  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.1

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ...++|+|.|| |..|...+..|.++|++|+++.++
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~   44 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS   44 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCC
Confidence            34578999998 999999999999999999999875

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=92.67  E-value=0.1  Score=44.30  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~   63 (260)
                      ..++|.|||+|..|.+.|..|.+.  |++|.+++++.
T Consensus         5 ~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            5 EEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            347899999999999999999988  67999998764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.66  E-value=0.24  Score=41.82  Aligned_cols=50  Identities=16%  Similarity=-0.033  Sum_probs=35.0

Q ss_pred             CCCCCCCCCCCCCCCCCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccC
Q 024958           14 DPKCLFPPEPEHYGGPKLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|++..++.........+.|+|.||+ -.|.+.|..|+++|.+|.+..++.
T Consensus        11 ~~~~~~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~   61 (277)
T 4fc7_A           11 DCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSL   61 (277)
T ss_dssp             SCCSCCCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CccccCCCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            34444433333333445678888875 569999999999999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.62  E-value=0.11  Score=43.67  Aligned_cols=34  Identities=21%  Similarity=0.348  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..+|+|||+|-.|..+|..|++.|. +++|+|...
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4789999999999999999999997 899999764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=92.60  E-value=0.15  Score=44.05  Aligned_cols=37  Identities=27%  Similarity=0.500  Sum_probs=31.9

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           27 GGPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        27 ~~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ....++|+|.|| |..|...+..|.++|++|+++.+..
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~   54 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFA   54 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            344578999998 9999999999999999999998743

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=92.54  E-value=0.076  Score=44.55  Aligned_cols=34  Identities=24%  Similarity=0.336  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|.+|+-.|..|.+.| +|+++++.+.
T Consensus       141 ~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          141 QGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             TCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            578999999999999999999999 9999987653

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=92.54  E-value=0.12  Score=47.51  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|||+|..|...+..|.+.|.+|+|++..
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            3578999999999999999999999999999874

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.51  E-value=0.13  Score=47.02  Aligned_cols=36  Identities=25%  Similarity=0.207  Sum_probs=31.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELL--------------------DQGH-EVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~--------------------~~G~-~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|+                    +.|. +|+|+++.+.+
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~  201 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL  201 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChH
Confidence            478999999999999999998                    5687 79999987643

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=92.50  E-value=0.16  Score=43.51  Aligned_cols=48  Identities=19%  Similarity=0.061  Sum_probs=32.6

Q ss_pred             CCCCCCCCCCCCCCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           17 CLFPPEPEHYGGPKLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        17 ~~~~~~~~~~~~~~~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +...|..+......+.|+|.||+ -.|.+.|..|+++|.+|.+++++..
T Consensus        15 ~~~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~   63 (299)
T 3t7c_A           15 QTQGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQ   63 (299)
T ss_dssp             -------CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSC
T ss_pred             cCCCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccc
Confidence            33334444445555778888875 4699999999999999999988744

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.43  E-value=0.12  Score=43.21  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|...|..|.+.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            589999999999999999999999999998864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=92.33  E-value=0.14  Score=47.25  Aligned_cols=36  Identities=28%  Similarity=0.218  Sum_probs=30.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~----~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|..|+-+|..|++    .|.+|+++++.+.+
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~  219 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN  219 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc
Confidence            4789999999999999999877    47899999987643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=91.50  E-value=0.025  Score=46.02  Aligned_cols=37  Identities=24%  Similarity=0.231  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++|.|||+|..|.+.|..|.+.|++|+++++...
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~   53 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ   53 (201)
Confidence            3447899999999999999999999999999987653

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.22  E-value=0.13  Score=44.28  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=30.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|.+|+-.|..|++.| +|+++.+..
T Consensus       162 ~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~  195 (357)
T 4a9w_A          162 AGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHE  195 (357)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCC
Confidence            3578999999999999999999998 699998763

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=92.21  E-value=0.16  Score=42.83  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=30.4

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +|+|||+|-+|-++++.|.+.|. +|+|+.|...
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~  143 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIE  143 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence            89999999999999999999998 9999988653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=92.16  E-value=0.15  Score=44.34  Aligned_cols=34  Identities=32%  Similarity=0.602  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .++|+|||+|..|-+.|+.|+..|+  ++.++|.+.
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~   41 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCc
Confidence            4699999999999999999998886  899998754

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=92.01  E-value=0.19  Score=43.19  Aligned_cols=35  Identities=34%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|.|| |..|...+..|.++|++|+++.+...
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSG   38 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            468999998 99999999999999999999988653

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=92.01  E-value=0.17  Score=43.45  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=31.0

Q ss_pred             CCCCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           25 HYGGPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        25 ~~~~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +++.+.++|+|.|| |..|...+..|.++|++|+++.+...
T Consensus         9 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~   49 (335)
T 1rpn_A            9 HHGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   49 (335)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            34566789999987 99999999999999999999988653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=91.99  E-value=0.094  Score=44.56  Aligned_cols=32  Identities=28%  Similarity=0.591  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||+|..|...|..|.+.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            589999999999999999999999999998 54

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=91.93  E-value=0.13  Score=49.98  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=32.8

Q ss_pred             CCcEEEEC--CCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIG--AGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIG--aG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||  +|..|+-+|..|++.|.+|+++++.+ +.
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~  565 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LA  565 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TT
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cc
Confidence            46899998  99999999999999999999999887 54

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=91.88  E-value=0.14  Score=44.15  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||+|||||..|-++|+.|..++.  ++.++|.+.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            589999999999999999998886  799999764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=91.87  E-value=0.21  Score=42.64  Aligned_cols=35  Identities=26%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..++|+|+|+|-+|.++++.|.+.|. +|+|+.|..
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~  154 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDM  154 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            35789999999999999999999996 899997753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=91.83  E-value=0.18  Score=44.14  Aligned_cols=35  Identities=31%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      .+.+||+|||||..|.+.|+.|...++  ++.++|.+
T Consensus         7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            445799999999999999999998886  89999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=91.82  E-value=0.17  Score=46.74  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|+|+|+|..|.++|..|+..|.+|+++|+++
T Consensus       264 ~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          264 AGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999998764

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=91.82  E-value=0.081  Score=53.10  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.++|+|||+|..|+-+|..|++.|.+|+|+|+.+.+
T Consensus       283 ~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~  319 (965)
T 2gag_A          283 AGARIAVATTNDSAYELVRELAATGGVVAVIDARSSI  319 (965)
T ss_dssp             SCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSC
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCcc
Confidence            3478999999999999999999999999999988764

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=91.80  E-value=0.13  Score=47.93  Aligned_cols=35  Identities=20%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       186 gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          186 GQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            57999999999999999999999999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=91.80  E-value=0.19  Score=42.23  Aligned_cols=32  Identities=31%  Similarity=0.472  Sum_probs=29.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|+|||+|..|.+.|..|.+.|.+|+++++..
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            89999999999999999999999999998753

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=91.79  E-value=0.37  Score=42.22  Aligned_cols=37  Identities=19%  Similarity=0.133  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++|.|||.|..|...|..|+..|++|+++++...
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~  184 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRK  184 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            3457899999999999999999999999999998654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=91.74  E-value=0.2  Score=43.73  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ..++|+|+|||-+|.++|+.|++.|. +|+|+.|.
T Consensus       153 ~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          153 IGKKMTICGAGGAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             cCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECC
Confidence            34789999999999999999999998 89999876

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=91.71  E-value=0.3  Score=41.25  Aligned_cols=35  Identities=23%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|+|.|| |-.|.+.|..|+++|.+|.++.++.
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~   63 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDA   63 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3467888887 5679999999999999999998764

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=91.68  E-value=0.22  Score=42.68  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..++|+|+|+|-+|.++++.|++.|. +|+|+.|..
T Consensus       126 ~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~  161 (283)
T 3jyo_A          126 KLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT  161 (283)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCH
Confidence            35789999999999999999999998 699997754

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=91.68  E-value=0.21  Score=42.40  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=30.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|+|.|| |..|...+..|.++|++|+++.+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   34 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            47999998 9999999999999999999998754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=91.65  E-value=0.13  Score=46.85  Aligned_cols=34  Identities=21%  Similarity=0.372  Sum_probs=31.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.-|||.|.-|+.+|..|+++|++|++++++..
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~   45 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQ   45 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5789999999999999999999999999988643

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=91.64  E-value=0.33  Score=43.06  Aligned_cols=37  Identities=22%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.|||+|..|...+..+.+.|++|.+++..+.
T Consensus        10 ~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~   46 (377)
T 3orq_A           10 KFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSED   46 (377)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4567899999999999999999999999999987543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=91.60  E-value=0.21  Score=42.84  Aligned_cols=35  Identities=26%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..++|+|||+|-+|.+.++.|.+.|. +|+|+.|..
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  160 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTF  160 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCH
Confidence            35789999999999999999999996 899997753

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=91.49  E-value=0.18  Score=43.15  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=28.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|+|-.|.+.|..|+++| +|+|+.++
T Consensus       128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            468999999988999999999999 99998764

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=91.39  E-value=0.25  Score=42.48  Aligned_cols=34  Identities=32%  Similarity=0.509  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   48 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSS   48 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChH
Confidence            58999996 99999999999999999999988653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.34  E-value=0.27  Score=40.73  Aligned_cols=37  Identities=27%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             CCCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           27 GGPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        27 ~~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ....+.|+|.|| |..|.+.|..|+++|++|.++.++.
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~   53 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   53 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            344577888887 5679999999999999999998764

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=91.30  E-value=0.22  Score=46.67  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=32.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ++|+|||+|..|...|..|.+.|++|+++|+++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~  383 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESP  383 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHH
Confidence            78999999999999999999999999999998763

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=91.29  E-value=0.17  Score=40.86  Aligned_cols=34  Identities=32%  Similarity=0.463  Sum_probs=30.8

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+|| |..|...+..|.++|++|+++.++..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~   39 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPE   39 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGG
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcc
Confidence            68999996 89999999999999999999998754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=91.21  E-value=0.19  Score=43.10  Aligned_cols=35  Identities=14%  Similarity=0.141  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..++|+|||+|-+|-++++.|.+.|. +|+|+.|..
T Consensus       121 ~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~  156 (282)
T 3fbt_A          121 KNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP  156 (282)
T ss_dssp             TTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence            35789999999999999999999998 899998764

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=91.19  E-value=0.22  Score=46.22  Aligned_cols=35  Identities=31%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|..|..+|..|+..|.+|+++|+.+
T Consensus       273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            45789999999999999999999999999999764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=91.17  E-value=0.29  Score=41.69  Aligned_cols=34  Identities=26%  Similarity=0.407  Sum_probs=30.3

Q ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|+| +|-.|.+.|..|+++|.+|+++.++
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~  152 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK  152 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            347899999 8999999999999999999998775

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=91.13  E-value=0.16  Score=43.91  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=31.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ....+|+|||+|-.|-.+|..|++.|. +++|+|...
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            445799999999999999999999997 888988643

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=91.13  E-value=0.22  Score=45.31  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||.|..|..+|..|+..|.+|+++|+++
T Consensus       219 ~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp  253 (435)
T 3gvp_A          219 GGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDP  253 (435)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            45789999999999999999999999999999764

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.10  E-value=0.25  Score=43.40  Aligned_cols=34  Identities=32%  Similarity=0.232  Sum_probs=30.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|.|| |..|...+..|.++|++|+++.+...
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            58999998 99999999999999999999987643

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=91.10  E-value=0.34  Score=42.38  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=32.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ...++|.|||.|..|...|..|...|++|+++++..
T Consensus       153 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          153 LTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            445789999999999999999999999999999764

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=91.08  E-value=0.26  Score=44.21  Aligned_cols=41  Identities=15%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ++.++|+|||+|..|...+..+.+.|++|.+++..+.+...
T Consensus        22 m~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d~~~~p~~~   62 (403)
T 3k5i_A           22 WNSRKVGVLGGGQLGRMLVESANRLNIQVNVLDADNSPAKQ   62 (403)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESTTCTTGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcHHH
Confidence            45689999999999999999999999999999933344443

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=91.08  E-value=0.36  Score=40.15  Aligned_cols=37  Identities=27%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             CCCCcEEEECC-CH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGA-GL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGa-G~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...+.|+|.|| |. .|.+.|..|+++|++|+++.++..
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~   58 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHER   58 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHH
Confidence            33567899998 74 899999999999999999987643

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=91.01  E-value=0.34  Score=39.00  Aligned_cols=34  Identities=21%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             CcEEEECC-CHHHHHHHHHHH-HCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELL-DQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~-~~G~~v~v~E~~~~   64 (260)
                      +.|+|+|| |..|...+..|. ++|++|+++.++..
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~   41 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLK   41 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcc
Confidence            45999996 899999999999 89999999988754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=91.00  E-value=0.58  Score=39.82  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=27.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .+.|+|.|| |-.|.+.|..|+++|.+|.+..+.
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~   82 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGADVAINYLP   82 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCG
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467888887 456999999999999999998765

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=90.99  E-value=0.27  Score=42.78  Aligned_cols=34  Identities=18%  Similarity=0.374  Sum_probs=30.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ..++|+|+|||-+|.++++.|++.|. +|+|+.|.
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt  181 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRK  181 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            34789999999999999999999998 89999876

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=90.95  E-value=0.21  Score=44.90  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +.++|+|||+|..|..++..|...|. +|+++++..
T Consensus       166 ~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          166 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             cCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            45789999999999999999999998 899998754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=90.85  E-value=0.18  Score=43.85  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=29.6

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCC--CcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQG--HEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G--~~v~v~E~~~   63 (260)
                      +||+|||| |..|.+.++.|+..|  .++.++|.+.
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            48999998 999999999999988  5899998765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=90.84  E-value=0.22  Score=43.38  Aligned_cols=33  Identities=33%  Similarity=0.450  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      +++|+|||||..|.+.|+.|...++  ++.++|.+
T Consensus         5 ~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            3699999999999999999999887  89999874

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.81  E-value=0.24  Score=50.05  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..+|+|||+|..|+-+|..+.+.|. +|+|+++.+
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~  366 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG  366 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecC
Confidence            3589999999999999999999996 899999876

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=90.75  E-value=0.15  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             CCcEEEECCCHHHHH-HHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMS-TAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~-aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|.|||.|-+|++ +|..|.++|++|++.|...
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            378999999999997 6999999999999999764

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=90.75  E-value=0.23  Score=43.08  Aligned_cols=32  Identities=34%  Similarity=0.556  Sum_probs=28.8

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +|+|||||..|.+.|+.|+..|+ ++.++|.+.
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            69999999999999999999888 699998764

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=90.69  E-value=0.22  Score=40.10  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+| +|..|...+..|.++|++|+++.++..
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~   35 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE   35 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGG
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            3799999 589999999999999999999988753

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=90.68  E-value=0.24  Score=42.13  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      .++|+|||+|-+|-++++.|.+.|. +|+|+.|.
T Consensus       119 ~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt  152 (271)
T 1npy_A          119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN  152 (271)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            4689999999999999999999997 89999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	2e-19
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	1e-18
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-05
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	2e-17
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	4e-17
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	8e-17
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-16
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	3e-14
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	7e-14
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	5e-10
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	7e-10
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	1e-09
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-09
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	1e-09
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	2e-09
d2gv8a1	335	c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox	5e-09
d1c0pa1	268	c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida	6e-09
d1kifa1	246	c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N	5e-08
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	1e-07
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	2e-07
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	2e-07
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-07
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	4e-07
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	6e-07
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	9e-07
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	1e-06
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	1e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-06
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	2e-06
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	6e-06
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	1e-05
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	2e-05
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	2e-05
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	3e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-05
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	8e-05
d1neka2	330	c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase	8e-05
d1fcda1	186	c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf	9e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	1e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	1e-04
d1nhpa1	198	c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter	1e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	1e-04
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	2e-04
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	2e-04
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	3e-04
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	4e-04
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	6e-04
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	6e-04
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	6e-04
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	7e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	8e-04
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	9e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	0.001
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.001
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.002
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	0.002
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	0.002
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	0.002
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	0.002
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	0.002
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	0.003
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	0.003
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	0.004
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	0.004
d1n1ea2	189	c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogen	0.004

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (207), Expect = 2e-19
 Identities = 20/76 (26%), Positives = 41/76 (53%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G G++GM+ A  L D G  V + E+R  +GG+  +  ++   ++++G        N
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN 61

Query: 93  NLFRLMKKFFMDVYRQ 108
            + RL K+  ++ Y+ 
Sbjct: 62  RILRLAKELGLETYKV 77

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (202), Expect = 1e-18
 Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           KV IIG+G++G++ A +L   G +V + E+R  +GG+V +F  K     ++G  +  G  
Sbjct: 7   KVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATF-RKGNYVADLGAMVVTGLG 65

Query: 92  NN-LFRLMKKFFMDVYRQ 108
            N +  + K+  M++ + 
Sbjct: 66  GNPMAVVSKQVNMELAKI 83

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 2e-05
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 172 QSLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNA 227
             L        P       P+  LF AG +T ++Y  ++ G  LS  + +  I + 
Sbjct: 391 YDLMAQPITPGPSIPGAPQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQ 446

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 78.3 bits (191), Expect = 2e-17
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           + VA++G G++G++ A  L  +G +  + ES + +GG VG+     G  +E G + F   
Sbjct: 1   MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTH-ALAGYLVEQGPNSFLDR 59

Query: 91  YNNLFRLMKKFFMD 104
                 L     ++
Sbjct: 60  EPATRALAAALNLE 73

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 77.6 bits (189), Expect = 4e-17
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           +VA+IGAG++G++ A +L   G  V ++E+    GGK+ S   + G   + G +      
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSV-SQDGLIWDEGANTMTESE 61

Query: 92  NNLFRLMKKF 101
            ++  L+   
Sbjct: 62  GDVTFLIDSL 71

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 76.7 bits (187), Expect = 8e-17
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 16  KCLFPPEPEHY-----------GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF 64
           +C    + E +             PK  V I+GAG+AG+S A  L   GH+V + E+   
Sbjct: 6   ECFQENDYEEFLEIARNGLKATSNPK-HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER 64

Query: 65  IGGKVGSF-IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDV 105
            GG+V ++  ++ G +  +G       +  +   ++KF + +
Sbjct: 65  PGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKFDLRL 106

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 74.1 bits (181), Expect = 5e-16
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHI-EMGLHIFFG 89
           K+ I+GAG +G     +L ++GH+V I + R  IGG      D +    +   G HIF  
Sbjct: 4   KILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHT 63

Query: 90  CYNNLFRLMKKFFMDVYRQLRQ 111
               ++  + K    +    R 
Sbjct: 64  DNETVWNYVNKHAEMMPYVNRV 85

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 69.2 bits (167), Expect = 3e-14
 Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           +V ++GAG++G+S A  L + G  ++ I E+   IGG++    +  G ++E+G +   G 
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKT-NFAGINVELGANWVEGV 60

Query: 91  YNNLFRLMKKFFM 103
                  +     
Sbjct: 61  NGGKMNPIWPIVN 73

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 67.5 bits (164), Expect = 7e-14
 Identities = 18/79 (22%), Positives = 29/79 (36%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
              I+G+GL G   A EL     +V + E R+ IGG   +   +     + G HIF    
Sbjct: 3   DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTND 62

Query: 92  NNLFRLMKKFFMDVYRQLR 110
             ++  +            
Sbjct: 63  KYIWDYVNDLVEFNRFTNS 81

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.7 bits (133), Expect = 5e-10
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 5/79 (6%)

Query: 32  KVAIIGAGLAGMSTAVELL--DQGHEVDIYESRSFIGGKVGSFI---DKHGNHIEMGLHI 86
           ++ ++G+G AG  TA  LL       VDIYE +    G V   +        ++      
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQ 62

Query: 87  FFGCYNNLFRLMKKFFMDV 105
                   F    +   DV
Sbjct: 63  TARSDRCAFYGNVEVGRDV 81

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 7e-10
 Identities = 18/112 (16%), Positives = 37/112 (33%), Gaps = 1/112 (0%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G G+     +  L   G +V   + +   GG+  S              I      
Sbjct: 8   VIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERE 67

Query: 93  NLFRLMKKFFMDVYRQLRQALGFLLRT-PDAGFSCFADLALTSPEDYYGEGQ 143
           + F   + + +D+  +   A G L         + + D    S    + +G+
Sbjct: 68  SKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGK 119

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 55.1 bits (131), Expect = 1e-09
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 10/103 (9%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGH-------EVDIYESRSFIGGKVGSFIDKHGNHIEMG 83
             +AI+G+G +    A  LL            VD+ E      G V S +      I+  
Sbjct: 3   YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSI 62

Query: 84  LHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSC 126
              F            +FF +V        G L    DA    
Sbjct: 63  SKQFEKTA---EDPRFRFFGNVVVGEHVQPGELSERYDAVIYA 102

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 1e-09
 Identities = 15/111 (13%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G GL     +  +   G +V   +   + GG+  S         +    +  G   
Sbjct: 9   VIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSI-TPLEELYKRF-QLLEGPPE 66

Query: 93  NLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQ 143
            + R        + + L      +        + + D  +      Y  G+
Sbjct: 67  TMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGK 117

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          PPE       ++ V ++GAG +G+     L + G  V + E+   +GG
Sbjct: 4  PPE-------EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGG 44

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
          ++A++G  ++G++ A+ L D G +VD+YE         G+ I      +  
Sbjct: 6  RIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHY 56

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 53.9 bits (128), Expect = 5e-09
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)

Query: 32  KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNH--IEMGLHIF 87
           K+AIIGAG +G+ TA  LL +    +V ++E R   GG V ++     N   +     I 
Sbjct: 6   KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGG-VWNYTSTLSNKLPVPSTNPIL 64

Query: 88  FGCYNNLFRLMKKFFMDVYRQLR 110
                     +  +   +YR L+
Sbjct: 65  TTEPIVGPAALPVYPSPLYRDLQ 87

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

 Score = 53.1 bits (126), Expect = 6e-09
 Identities = 12/110 (10%), Positives = 32/110 (29%), Gaps = 6/110 (5%)

Query: 29  PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG------SFIDKHGNHIEM 82
            + +V ++G+G+ G+S+A+ L  +G+ V I                  +  +        
Sbjct: 5   SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQTFASPWAGANWTPFMTLT 64

Query: 83  GLHIFFGCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLAL 132
                     + F+   +     +    +      +  D     +     
Sbjct: 65  DGPRQAKWEESTFKKWVELVPTGHAMWLKGTRRFAQNEDGLLGHWYKDIT 114

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.2 bits (119), Expect = 5e-08
 Identities = 13/84 (15%), Positives = 28/84 (33%)

Query: 31  LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
           ++V +IGAG+ G+STA+ + ++ H V           +   F            +     
Sbjct: 1   MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFTPFTTTDVAAGLWQPYTSEPS 60

Query: 91  YNNLFRLMKKFFMDVYRQLRQALG 114
                   ++ F  +   +     
Sbjct: 61  NPQEANWNQQTFNYLLSHIGSPNA 84

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 49.3 bits (116), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV---GSFIDKHGNHIEMGLHIFFG 89
           V +IG G +G+  A+   ++G  V + +  + +G K+   G       N + +   +   
Sbjct: 5   VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHI 64

Query: 90  CYNNLFRLMKKFFM 103
             N  F        
Sbjct: 65  PGNGRFLYSAFSIF 78

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV---GSFIDKHGNHIEMGLHIFF 88
           +  IIGAG AG+  A +L   G  V ++++   IG K+   G       N      H   
Sbjct: 6   ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLS 65

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSC 126
              + +   + ++    +  L    G      + G   
Sbjct: 66  QNPHFVKSALARYTNWDFISLVAEQGITYHEKELGQLF 103

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 47.8 bits (112), Expect = 2e-07
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGC 90
          K+A++GAG A +S A  L   G+ ++ I+E + ++GG   S I +     ++        
Sbjct: 6  KIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65

Query: 91 YNN 93
           + 
Sbjct: 66 KDL 68

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.0 bits (113), Expect = 3e-07
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 11/99 (11%)

Query: 32  KVAIIGAGLAGMSTAVEL-LDQGHEVDIYESRSFIGGKVGS--------FIDKHGNHIEM 82
            V ++GAG AG+S A E+  +   +V I E     GG             + K  +    
Sbjct: 35  DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLD 94

Query: 83  GLHIFFGCYNNLFRLMK--KFFMDVYRQLRQALGFLLRT 119
            + + +   +    +     F   +  +L       L  
Sbjct: 95  EIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFN 133

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.6 bits (112), Expect = 4e-07
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS 63
          K +VAIIGAG +G+     L   G +  I E ++
Sbjct: 2  KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT 35

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V ++G+G AG S A+   D G +V + E    IGG   + +   G +             
Sbjct: 19  VVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGN--AKLAAGGMNAAWTDQQKAKKIT 76

Query: 93  NLFRLMKKFFMDVYRQL 109
           +   LM +  M   + +
Sbjct: 77  DSPELMFEDTMKGGQNI 93

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 46.9 bits (110), Expect = 9e-07
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V IIG+G AG++ AV   D G +V + E     GG
Sbjct: 26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGG 60

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGSFIDKHGNHIEM 82
          + + I GAG+ G+S A+ L   G  +V + ES S I   +G  I+     +E 
Sbjct: 2  IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP-LGVGINIQPAAVEA 53

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 5/47 (10%)

Query: 25 HYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGS 71
          H+      V ++GAG  GM+   +L  QG +  + ++          
Sbjct: 3  HF-----DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IG G+ G + A  L  +     ++ES +  G 
Sbjct: 7  AVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR 41

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK 68
          V ++GAG AG + ++     G  V + +   F GG 
Sbjct: 22 VLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN 57

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (104), Expect = 6e-06
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFIGGKV 69
           V I+GAG +G+S A  +       +V I ES    GG  
Sbjct: 52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGS 91

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 33  VAIIGAGLAGMSTAVEL------LDQGHEVDIYESRSFIGGKV--GSFIDKHGNHIEMGL 84
           V I+GAG AG+S A  L       ++   V + E  + IG     G+ +D          
Sbjct: 35  VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPD 94

Query: 85  HIFFGCYNNLFRLMKKFFMD 104
               G   N      +F + 
Sbjct: 95  WKEKGAPLNTPVTEDRFGIL 114

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 42.2 bits (98), Expect = 2e-05
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            A++G G  G + A  L  +G  V  ++  +    ++    D+     E          
Sbjct: 3  TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA---QRIKEIQDRGAIIAEGPGLAGTAHP 59

Query: 92 N 92
          +
Sbjct: 60 D 60

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IG GLAG+  AV    +G    +         
Sbjct: 8  SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRS 42

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V IIG G AG   A++    G      E R  +GG   +        +          ++
Sbjct: 8   VVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKAL----LNNSHLFH 63

Query: 93  NLFRLMKKFFMDVY 106
            +    +K  +DV 
Sbjct: 64  QMHTEAQKRGIDVN 77

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 29/190 (15%), Positives = 52/190 (27%), Gaps = 23/190 (12%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG--------KVGSFIDKHGNHIEMGL 84
           V ++G G  G S A    D+G +V I E    +GG           + +       E+  
Sbjct: 9   VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68

Query: 85  HIFFGCYNNLFRLMKKFFM----DVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYG 140
               G       L           V  +L   L  + ++            L        
Sbjct: 69  LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVS 128

Query: 141 EGQGSLLQCVLTPGNPYMPLPNDEIIRRVARQSLYRGGP-----------GKVPLRTDQK 189
              G   +     G   +    + II   +R    +              G + +    +
Sbjct: 129 LTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR 188

Query: 190 TPVKNLFLAG 199
           T V +++  G
Sbjct: 189 TNVPHIYAIG 198

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 31 LKVAIIGAGLAGMSTAVELLDQGHEV---DIYESRSFIGGKVGSFIDKHGNHIEMGLHIF 87
          ++++I G G  G   A  L  +GHEV   D+  ++  I              +E  L   
Sbjct: 1  MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQG 58

Query: 88 FGCYNN 93
                
Sbjct: 59 RQTGRL 64

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} Length = 330

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
            +IGAG AGM  A+++   G    +         
Sbjct: 10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS 44

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

 Score = 39.8 bits (91), Expect = 9e-05
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 12/77 (15%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           KV ++G G  G + A  +      +++              I+ + ++    L       
Sbjct: 4   KVVVVGGGTGGATAAKYIKLADPSIEVT------------LIEPNTDYYTCYLSNEVIGG 51

Query: 92  NNLFRLMKKFFMDVYRQ 108
           +     +K  +  +   
Sbjct: 52  DRKLESIKHGYDGLRAH 68

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.9 bits (92), Expect = 1e-04
 Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 17/183 (9%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
              IG G  G+++       G +  + E    +GG   +        +     I    + 
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIE-AKELGGTCVNVGCVPKKVMWHAAQIREAIHM 63

Query: 93  NL-------------FRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYY 139
                          +  +         ++  +   +L   +          + +     
Sbjct: 64  YGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEV 123

Query: 140 GEGQ-GSLLQCVLTPGNPYMP-LPNDEIIRRVARQSLYRGGPGKVPLRTDQKTPVKNLFL 197
                 +    + T G P  P  P ++ I   A   +     G + +   Q T ++ ++ 
Sbjct: 124 NGETITADHILIATGGRPSHPREPANDNINLEAA-GVKTNEKGYIVVDKYQNTNIEGIYA 182

Query: 198 AGS 200
            G 
Sbjct: 183 VGD 185

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 40.5 bits (93), Expect = 1e-04
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 32 KVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSFIGGKVGS 71
          ++ IIGAG+ G + A EL+ +G + + + + +  +    GS
Sbjct: 3  RIVIIGAGIVGTNLADELVTRGWNNITVLD-QGPLNMPGGS 42

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 32 KVAIIGAGLAGMSTAVEL--LDQGHEVDIYESRSFI 65
          KV ++G+   G     EL  L    E+  YE   FI
Sbjct: 2  KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 13/62 (20%), Positives = 23/62 (37%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
          V IIG G  G   A++    G +    E R  +GG   +        +    H++    +
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65

Query: 93 NL 94
          + 
Sbjct: 66 SF 67

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI 65
          K  V ++GAGLA +S   EL   G++  I       
Sbjct: 3  KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA 38

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 5/38 (13%)

Query: 33 VAIIGAGLAGMSTAVELLDQ-----GHEVDIYESRSFI 65
          V I+GAG AG+  A  L +        +V I + RS  
Sbjct: 10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 12/76 (15%), Positives = 19/76 (25%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V +IGAG  G   A++    G +  + E      GK                 +    Y 
Sbjct: 6   VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYK 65

Query: 93  NLFRLMKKFFMDVYRQ 108
                       +   
Sbjct: 66  FHEAHESFKLHGISTG 81

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
            V+I+GAG  G + +V L+D G+EV I+          G+  D                 
Sbjct: 2   IVSILGAGAMGSALSVPLVDNGNEVRIW----------GTEFDTEILKSISAGREHPRLG 51

Query: 92  NNLFRLMKKFFMDVY 106
             L  +   +   + 
Sbjct: 52  VKLNGVEIFWPEQLE 66

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYE 60
           V I+G GLAG+  A  L   G E +I  
Sbjct: 5  NVVIVGTGLAGVEVAFGLRASGWEGNIRL 33

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           V IIG GL G+S     L +G    + ++R               + +   +    G  
Sbjct: 7  NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM---------TPPGLDKLPEAVERHTGSL 57

Query: 92 N 92
          N
Sbjct: 58 N 58

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
          K+ ++G GL G S A +L  +GH +     +     K            ++ L       
Sbjct: 2  KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKII 61

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG 67
          V IIG+G AG+S A+ L DQ  +V +        G
Sbjct: 10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEG 43

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 8e-04
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
             ++GAG  G   A+     G +V I E +  +GG   +        +    H +    +
Sbjct: 6   TLVVGAGPGGYVAAIRAAQLGQKVTIVE-KGNLGGVCLNVGCIPSKALISASHRYEQAKH 64

Query: 93  NLFRLMKKFFMDVYRQ 108
           +    +K   + +   
Sbjct: 65  SEEMGIKAENVTIDFA 80

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 9e-04
 Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 5/36 (13%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDI 58
          P H         +IG G A  + A  +  +     +
Sbjct: 2  PSHV-----PFLLIGGGTAAFAAARSIRARDPGARV 32

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 4/82 (4%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK---VGSFIDKHGNHIEMGLHIFFG 89
           + +IG G  GM+ A        +V + E +S +GG    VG    K   +      I   
Sbjct: 4   LIVIGGGSGGMAAARRAARHNAKVALVE-KSRLGGTCVNVGCVPKKIMFNAASVHDILEN 62

Query: 90  CYNNLFRLMKKFFMDVYRQLRQ 111
             +  F     F + +  + R 
Sbjct: 63  SRHYGFDTKFSFNLPLLVERRD 84

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDI 58
          +AI+GAG AG+  A+          I
Sbjct: 8  LAIVGAGGAGLRAAIAAAQANPNAKI 33

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 33 VAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFIGG 67
          + IIG G +G   A E        G +V + E  +    
Sbjct: 24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 23 PEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV 69
          P      K  +A++GAG AG++ A+    +GH+V ++++ S IGG+ 
Sbjct: 36 PILPAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQF 82

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 10/69 (14%), Positives = 22/69 (31%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           + IIG G  G++ A E      +V + +  +         +     ++            
Sbjct: 6   LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAA 65

Query: 93  NLFRLMKKF 101
            L + +K  
Sbjct: 66  LLGQALKDS 74

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIY---ESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K+ ++G G  G      L  QGHEV  +            V +        +      F 
Sbjct: 2   KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFL 61

Query: 89  GCYNNLFRLMKKFFMDVYRQLRQA 112
              + L   +K + +    +   +
Sbjct: 62  ATSDLLLVTLKAWQVSDAVKSLAS 85

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 14/128 (10%), Positives = 35/128 (27%), Gaps = 8/128 (6%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           ++ I+G+G A  + A+       +  ++E             D                 
Sbjct: 7   RLCIVGSGPAAHTAAIYAARAELKPLLFEG--------WMANDIAPGGQLTTTTDVENFP 58

Query: 92  NNLFRLMKKFFMDVYRQLRQALGFLLRTPDAGFSCFADLALTSPEDYYGEGQGSLLQCVL 151
                ++     D +R+  +  G  + T       F+        D       +++  + 
Sbjct: 59  GFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIG 118

Query: 152 TPGNPYMP 159
                + P
Sbjct: 119 AVAKGHEP 126

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 10/77 (12%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEV---DIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF 88
           K+A+ G+G  G+S  V LL   +EV   DI  S      KV    +      +  +  + 
Sbjct: 2   KIAVAGSGYVGLSLGV-LLSLQNEVTIVDILPS------KVDKINNGLSPIQDEYIEYYL 54

Query: 89  GCYNNLFRLMKKFFMDV 105
                  +         
Sbjct: 55  KSKQLSIKATLDSKAAY 71

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 12/75 (16%), Positives = 23/75 (30%)

Query: 33  VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
           V I+G+G AG + A+    +G    +   R          I+ + +  +       G   
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 93  NLFRLMKKFFMDVYR 107
                     +D   
Sbjct: 64  VHVDEYDVDVIDSQS 78

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 1/61 (1%)

Query: 33 VAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYN 92
          + IIG G  G   A+     G    + E    +GG   +        +      F     
Sbjct: 8  LLIIGGGPGGYVAAIRAGQLGIPTVLVE-GQALGGTCLNIGCIPSKALIHVAEQFHQASR 66

Query: 93 N 93
           
Sbjct: 67 F 67

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 8/76 (10%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           K+ I+G+G AG + AV       +  +       G        +     E+         
Sbjct: 7   KLLILGSGPAGYTAAVYAARANLQPVLITGMEKGG--------QLTTTTEVENWPGDPND 58

Query: 92  NNLFRLMKKFFMDVYR 107
                LM++      +
Sbjct: 59  LTGPLLMERMHEHATK 74

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 35.6 bits (80), Expect = 0.004
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 13  EDPKCLFPPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF 72
           E  +   P +          V I+GAG +G   A  L++ G+ V + ++   IGG +   
Sbjct: 33  EYRRGWHPEKFRQTKNKD-SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHL--N 89

Query: 73  IDKHGNHIEMGLHIFFGCYNNLFRLMKKFFMDVYRQ 108
                  +    +        + +L+KK        
Sbjct: 90  QVAALPGLGEWSYHRDYRETQITKLLKKNKESQLAL 125

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

 Score = 34.8 bits (79), Expect = 0.004
 Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 11/102 (10%)

Query: 32  KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY 91
           K  + G+G  G + A+ L  +  EV ++         V    +       + L       
Sbjct: 9   KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT 68

Query: 92  NNLFRLMKK-----------FFMDVYRQLRQALGFLLRTPDA 122
           +++ +               F    + +    L    +    
Sbjct: 69  SDVEKAYNGAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQV 110

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.59
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.58
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.55
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.53
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.49
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.47
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.41
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.25
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.24
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.23
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.16
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.14
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.08
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.03
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.0
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.94
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.92
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.87
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.83
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.83
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.82
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.77
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.75
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.74
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.71
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.68
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.66
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.64
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.63
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.63
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.59
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.58
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.55
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.53
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.47
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.46
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.44
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.43
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.42
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.4
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.4
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.4
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	98.38
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.37
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.33
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.3
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.26
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	98.23
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.22
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.22
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	98.22
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.21
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.18
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	98.13
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	98.11
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.1
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.06
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.05
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.04
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.01
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.0
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.96
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.95
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.93
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.92
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.87
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.86
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.83
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.83
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.8
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.78
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.78
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	97.73
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.72
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.63
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.58
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.58
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.57
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.52
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.47
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.44
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.37
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.35
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.35
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.24
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.18
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.16
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.15
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.01
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.99
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.98
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.9
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.89
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.79
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.78
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.72
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.64
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.47
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.28
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.24
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.23
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.19
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	96.13
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.09
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.04
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.03
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.01
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.93
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.87
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.85
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.79
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.77
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.61
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.58
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.57
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.56
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.44
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.41
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	95.41
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	95.33
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	95.23
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.05
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	95.03
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.0
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.83
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	94.72
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.71
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.65
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.42
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.39
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.34
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.33
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.32
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.31
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.21
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.16
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.11
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.95
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.94
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	93.78
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	93.6
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.5
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.46
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.44
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	93.42
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	93.11
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.04
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.85
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	92.82
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.66
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	92.55
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.54
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.25
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	92.06
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.95
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.82
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	91.71
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	91.33
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.28
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.27
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.16
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.15
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	91.09
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	91.06
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.86
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.77
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.53
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.46
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	90.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	90.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.21
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.87
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.78
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	89.29
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.27
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	88.75
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.61
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	88.54
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	88.44
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	87.9
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.66
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	87.65
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	87.51
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.27
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	87.06
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	87.05
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	87.02
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	86.96
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	86.94
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	86.89
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	86.64
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	86.35
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	86.3
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	86.24
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	86.06
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.01
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.99
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	85.94
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.93
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	85.79
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.78
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	85.62
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.49
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.43
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	85.4
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	85.28
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	85.18
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	85.11
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.99
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.93
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.77
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	84.62
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.54
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	84.51
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	84.42
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.34
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	84.3
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	83.99
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.99
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.88
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	83.83
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.81
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	83.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	83.67
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	83.57
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.47
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.45
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	83.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.3
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.19
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.12
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	83.05
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	83.0
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	82.9
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	82.68
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	82.68
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	82.61
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	82.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	82.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	82.3
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	82.25
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.23
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	82.11
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	81.86
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.73
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.62
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.6
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	81.51
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	81.34
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	81.11
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	81.09
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	81.08
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	81.01
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.0
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.91
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	80.61
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	80.51
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	80.21
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.14
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	80.09
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	80.06
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	80.04
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.01

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.3e-15  Score=129.50  Aligned_cols=71  Identities=31%  Similarity=0.497  Sum_probs=61.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc-hHHHHHHHH
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY-NNLFRLMKK  100 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~-~~~~~~~~~  100 (260)
                      .+.||+|||||++||+||+.|+++|++|+|||+++++||+++++. .+|..+|.|++++++.+ +.+..++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~~~~~~~~~l~~~   75 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLGGNPMAVVSKQ   75 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSBTCHHHHHHHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECCCCCcHHHHHHHH
Confidence            457899999999999999999999999999999999999999876 68999999999997654 344455444

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.58  E-value=1.1e-15  Score=128.42  Aligned_cols=71  Identities=27%  Similarity=0.438  Sum_probs=65.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      .|||+|||||++||+||++|+++|++|+|||+++.+||+++++. .+|..+|.|+++++..+.++.++++++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~~~~~~   71 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEGDVTFLIDSL   71 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSHHHHHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCHHHHHHHHHh
Confidence            37899999999999999999999999999999999999998876 689999999999998888888877664

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.5e-15  Score=128.78  Aligned_cols=70  Identities=27%  Similarity=0.483  Sum_probs=65.1

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ||+|||||++||+||++|+++|++|+|||+++.+||++++....+|..+|.|++++...+++++++++++
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~~~~~l~~~l   70 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKEL   70 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCHHHHHHHHHT
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCChHHHHHHHHc
Confidence            7999999999999999999999999999999999999998776788999999999999888888887765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.53  E-value=6e-15  Score=123.95  Aligned_cols=70  Identities=27%  Similarity=0.473  Sum_probs=63.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      +||+|||||++||+||++|+++|++|+|||+++.+||+.+++. .+|..+|.|++++...++++.+++++.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~~~~~l~~~~   70 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREPATRALAAAL   70 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe-eCCEEEecCceEEecCCHHHHHHHHHh
Confidence            5899999999999999999999999999999999999998876 689999999999988888877766653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.49  E-value=5.8e-15  Score=121.02  Aligned_cols=60  Identities=30%  Similarity=0.510  Sum_probs=54.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccceeeecCCCcEeeeceeEEcCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFFGCY   91 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~~~~   91 (260)
                      +||+|||||++||+||+.|+++|+ +|+||||++.+||++++.. .+|..+|.|+++++..+
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~   61 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVN   61 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEES
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEeccc
Confidence            489999999999999999999996 7999999999999998875 68999999999886543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.47  E-value=3.9e-14  Score=121.08  Aligned_cols=74  Identities=28%  Similarity=0.436  Sum_probs=64.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec-CCCcEeeeceeEEcCcchHHHHHHHHH
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID-KHGNHIEMGLHIFFGCYNNLFRLMKKF  101 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~~  101 (260)
                      ...++|+|||||++||+||++|+++|++|+|||+++.+||+++++.. ..+..+|.|++++...+.++.++++++
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~~~~~l~~~~  102 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHRIVREYIRKF  102 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCHHHHHHHHHT
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccHHHHHHHHHh
Confidence            34579999999999999999999999999999999999999987653 357889999999988888887777654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.47  E-value=2.4e-14  Score=124.65  Aligned_cols=71  Identities=30%  Similarity=0.475  Sum_probs=62.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeec--CCCcEeeeceeEEcCcchHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFID--KHGNHIEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~--~~g~~~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .++|+|||||++||++|+.|+++|++|+|||+++++||+++++.+  .++..++.|+|+++...+.++..+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~~v~~~~~~   74 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNK   74 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCHHHHHHHHT
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccHHHHHHHHH
Confidence            479999999999999999999999999999999999999988753  45678899999998888888776654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=7.3e-14  Score=120.52  Aligned_cols=69  Identities=28%  Similarity=0.379  Sum_probs=60.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcE-eeeceeEEcCcchHHHHHHHH
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNH-IEMGLHIFFGCYNNLFRLMKK  100 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~-~d~g~~~~~~~~~~~~~~~~~  100 (260)
                      .||+|||||+|||++|++|+++|++|+|||+++++||++++.. ..|.. ++.|+|+++...+.++..+.+
T Consensus         2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~~v~~~~~~   71 (298)
T d1i8ta1           2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDKYIWDYVND   71 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCHHHHHHHHT
T ss_pred             ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecchHHHHHhhc
Confidence            5899999999999999999999999999999999999999864 56765 488999998878877776654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.25  E-value=8e-13  Score=109.69  Aligned_cols=45  Identities=31%  Similarity=0.482  Sum_probs=41.7

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceee
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   72 (260)
                      ...++|+|||||++||++|..|+++|++|+|+|+++.+||.|...
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~   91 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQV   91 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHH
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccc
Confidence            455899999999999999999999999999999999999998753

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=3.6e-12  Score=103.49  Aligned_cols=43  Identities=21%  Similarity=0.335  Sum_probs=40.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSF   72 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~   72 (260)
                      ..||+|||||++||+||+.|+++|++|+|||+++.+||++++.
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~   47 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASV   47 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEe
Confidence            4899999999999999999999999999999999999998764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.16  E-value=6.8e-12  Score=108.12  Aligned_cols=58  Identities=21%  Similarity=0.342  Sum_probs=50.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeeecCCCcEeeeceeEEc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFIDKHGNHIEMGLHIFF   88 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~g~~~~~   88 (260)
                      ..||+|||||++||++|+.|+++|++|+||||++.+||.|+.. .++|..+|...+.+.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n-~ypg~~~d~~~~~~~   64 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWN-RYPGARCDIESIEYC   64 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHC-CCTTCBCSSCTTTSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccC-CCCCceecccccccc
Confidence            4899999999999999999999999999999999999999754 478888876655553

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=3.5e-11  Score=96.02  Aligned_cols=44  Identities=34%  Similarity=0.652  Sum_probs=40.9

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ...+++|+|||||++||+||+.|+++|++|+|||+.+.+||.++
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            34468999999999999999999999999999999999999876

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.08  E-value=4.5e-11  Score=103.85  Aligned_cols=48  Identities=38%  Similarity=0.499  Sum_probs=41.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcccccceeeecCCCcE
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFIGGKVGSFIDKHGNH   79 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~~~~~~~g~~   79 (260)
                      ++|+|||||+|||++|+.|+++|  ++|+||||++.+||.|+... +.+..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~-~~~~~   54 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTS-TLSNK   54 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCS-CCCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccC-CCCcc
Confidence            78999999999999999999887  59999999999999998543 34433

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.03  E-value=3.8e-12  Score=93.25  Aligned_cols=55  Identities=5%  Similarity=-0.106  Sum_probs=49.8

Q ss_pred             ccCCCCCCCCC----CCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHH
Q 024958          175 YRGGPGKVPLR----TDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELV  232 (260)
Q Consensus       175 ~p~~pG~~~F~----G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~  232 (260)
                      +|++||++.|+    |+++|| ++|+.+.+|.  |+.|+|+|+|+||.|+|.+|++.|++++
T Consensus         1 iP~ipGl~~f~~~~~G~i~Hs-~~y~~~~~f~--gK~VlVVG~g~Sa~dia~~l~~~ak~v~   59 (107)
T d2gv8a2           1 IPNIKGLDEYAKAVPGSVLHS-SLFREPELFV--GESVLVVGGASSANDLVRHLTPVAKHPI   59 (107)
T ss_dssp             BCCCBTHHHHHHHSTTSEEEG-GGCCCGGGGT--TCCEEEECSSHHHHHHHHHHTTTSCSSE
T ss_pred             CcCCCChHHHhccCCccEEEC-CcCcchhhcC--CCeEEEECCCCCHHHHHHHHHHhcCEEE
Confidence            57888987764    999999 9999999987  8999999999999999999999998864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=5.5e-11  Score=97.55  Aligned_cols=42  Identities=31%  Similarity=0.354  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCC-------CcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQG-------HEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G-------~~v~v~E~~~~~GG~~~~   71 (260)
                      +++|+|||||+|||+||+.|+++|       ++|+|||+.+.+||.|++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~   50 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRS   50 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeee
Confidence            369999999999999999999998       479999999999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=2.7e-10  Score=90.65  Aligned_cols=42  Identities=36%  Similarity=0.604  Sum_probs=39.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~~   71 (260)
                      .+||+|||||++||++|+.|+++|+ +|+||||++.+||.++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            4799999999999999999999998 59999999999998864

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.92  E-value=5.6e-11  Score=97.24  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             hhccCCCCCCCCCCCCCCCCccc-cccccccccccccchhHHHHhHHHHHHHHHHhhhhH
Q 024958          173 SLYRGGPGKVPLRTDQKTPVKNL-FLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEEL  231 (260)
Q Consensus       173 p~~p~~pG~~~F~G~~~hs~~~y-r~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v  231 (260)
                      |++|++||++.|+|+++|| +.| +.+.+|.  ||+|+|+|+|.||.|||.++++.++++
T Consensus         2 P~iP~~pG~e~F~G~v~HS-~~~~~~~~~~~--gK~V~VvG~G~Sa~dia~~~~~~~~~~   58 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHT-GNWPHEPVDFS--GQRVGVIGTGSSGIQVSPQIAKQAAEL   58 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEG-GGCCSSCCCCB--TCEEEEECCSHHHHHHHHHHHHHBSEE
T ss_pred             CCCCCCCChhhCCCcEEec-CcCCCCCCCCC--CCEEEEECCCccHHHHHHHHHhhhccc
Confidence            7899999999999999999 777 4556666  999999999999999999999988764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.87  E-value=5.3e-10  Score=91.58  Aligned_cols=41  Identities=37%  Similarity=0.498  Sum_probs=37.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccccee
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~~~   71 (260)
                      ++|+|||||+|||+||..|+++  |++|+|||+.+.+||.+++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            5999999999999999999876  7899999999999998864

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.83  E-value=1.5e-09  Score=89.23  Aligned_cols=41  Identities=24%  Similarity=0.367  Sum_probs=36.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      .++||+|||||++||++|++|+++|++|+|+||....+|..
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s   45 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSS   45 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcc
Confidence            35799999999999999999999999999999987555543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=1e-09  Score=92.64  Aligned_cols=42  Identities=33%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC-CCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~-G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..||+|||||++||++|++|+++ |++|+|||+++.+||.|++
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            47899999999999999999874 9999999999999998863

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.82  E-value=2e-09  Score=89.09  Aligned_cols=39  Identities=28%  Similarity=0.537  Sum_probs=35.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      ...||+|||||++||++|..|+++|++|+||||++.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~   41 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLS   41 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            347999999999999999999999999999999877543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.77  E-value=2.3e-09  Score=88.40  Aligned_cols=41  Identities=24%  Similarity=0.495  Sum_probs=38.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++||++|+.|+++|++|+|+||++.+||++.
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~   42 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLA   42 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCccee
Confidence            47999999999999999999999999999999999987653

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=2.2e-09  Score=87.46  Aligned_cols=41  Identities=32%  Similarity=0.454  Sum_probs=39.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ++||+|||||++||+||..+++.|++|+|+|+.+.+||.|.
T Consensus         5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            47999999999999999999999999999999999999875

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.74  E-value=3.9e-09  Score=85.36  Aligned_cols=42  Identities=29%  Similarity=0.438  Sum_probs=39.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++||++|..+++.|++|+|+|+++.+||.|.
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            358999999999999999999999999999999999999875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.71  E-value=4.6e-09  Score=87.27  Aligned_cols=38  Identities=37%  Similarity=0.563  Sum_probs=35.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||||++||.||+.|+++|++|+||||++.+|+.
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k   42 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRK   42 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Confidence            69999999999999999999999999999999998744

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.68  E-value=5.7e-09  Score=85.32  Aligned_cols=41  Identities=32%  Similarity=0.489  Sum_probs=38.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++||+||..|++.|++|+|+|+.+.+||.+.
T Consensus         6 dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            37999999999999999999999999999999999999754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.66  E-value=2.7e-08  Score=83.27  Aligned_cols=40  Identities=23%  Similarity=0.343  Sum_probs=36.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..+||+|||||++|+++|++|+++|++|+|+|+.+.+++.
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~~G~~V~viE~~~~~~~~   41 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTN   41 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSSCSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcc
Confidence            3589999999999999999999999999999998776544

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.64  E-value=1e-08  Score=85.43  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .||+|||||++|+++|++|+++|++|+||||++..+|.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~~~ga   42 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRT   42 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTTH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            68999999999999999999999999999998755554

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.63  E-value=1.3e-08  Score=84.30  Aligned_cols=40  Identities=35%  Similarity=0.449  Sum_probs=35.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~~GG~~~   70 (260)
                      .||+|||||++||++|+.|+++|+ +|+||||++.++..++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~   42 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGV   42 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCce
Confidence            699999999999999999999996 9999999988765443

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=8.6e-09  Score=83.30  Aligned_cols=40  Identities=20%  Similarity=0.365  Sum_probs=36.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||..+++.|++|+|+|++ .+||.|.
T Consensus         2 ~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            379999999999999999999999999999985 6899874

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=2.1e-08  Score=80.89  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=36.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      .++||+|||||++||+||..+++.|++|+|+|+....++..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~   42 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccc
Confidence            46899999999999999999999999999999977655544

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.58  E-value=2e-08  Score=88.65  Aligned_cols=39  Identities=36%  Similarity=0.534  Sum_probs=35.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH------CCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD------QGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~------~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||||+||++||++|++      +|++|+||||...+|..
T Consensus        32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k   76 (380)
T d2gmha1          32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   76 (380)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCC
Confidence            3799999999999999999998      89999999999888654

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.55  E-value=3e-08  Score=84.19  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=38.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||+|++||++|+.|+++|++|+|+||.+..||...
T Consensus        16 ~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~   56 (308)
T d1y0pa2          16 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK   56 (308)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcce
Confidence            47999999999999999999999999999999999988643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=2.5e-08  Score=85.37  Aligned_cols=42  Identities=33%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccccee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGKVGS   71 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~~~~   71 (260)
                      ..||+|||||++||+||+.|+++  |++|+|||+++.+||.++.
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            47899999999999999999975  9999999999999998863

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.47  E-value=5.4e-08  Score=83.35  Aligned_cols=41  Identities=37%  Similarity=0.541  Sum_probs=38.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..||+|||+|++||++|+.|+++|++|+|+||.+..||...
T Consensus        23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~   63 (322)
T d1d4ca2          23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK   63 (322)
T ss_dssp             ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGG
T ss_pred             cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCccc
Confidence            47999999999999999999999999999999999988643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.46  E-value=6.4e-08  Score=75.80  Aligned_cols=38  Identities=29%  Similarity=0.514  Sum_probs=35.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +||+|||||++|+.||..+++.|++|+|+|++  +||++.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            69999999999999999999999999999974  688775

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.44  E-value=4.9e-08  Score=81.93  Aligned_cols=36  Identities=36%  Similarity=0.381  Sum_probs=33.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.+|+|||||++||++|..|+++|++|+||||.+.+
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            358999999999999999999999999999998754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.43  E-value=7.5e-08  Score=77.46  Aligned_cols=40  Identities=28%  Similarity=0.480  Sum_probs=36.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+||+|||||++|++||..+++.|++|+|+|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            4799999999999999999999999999999854 688754

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.42  E-value=8.8e-08  Score=82.07  Aligned_cols=38  Identities=24%  Similarity=0.330  Sum_probs=35.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      +||+|||+|++||+||+.++++|.+|+|+||....||.
T Consensus         6 ~DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~~~g~   43 (336)
T d2bs2a2           6 CDSLVIGGGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (336)
T ss_dssp             CSEEEECCSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCc
Confidence            69999999999999999999999999999999877664

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.40  E-value=7.1e-08  Score=78.03  Aligned_cols=41  Identities=24%  Similarity=0.338  Sum_probs=37.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      .+.|++|||||++|+.+|..+++.|++|+|+|+. .+||.|.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            4589999999999999999999999999999986 5798865

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.40  E-value=9.2e-08  Score=81.85  Aligned_cols=40  Identities=28%  Similarity=0.526  Sum_probs=37.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|++||+||+.++++|++|+|+||.+..||..
T Consensus        19 ~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S   58 (317)
T d1qo8a2          19 TTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNS   58 (317)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTG
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            4799999999999999999999999999999999988864

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.40  E-value=9.4e-08  Score=79.47  Aligned_cols=39  Identities=26%  Similarity=0.440  Sum_probs=36.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      +|++|||||++|+.||.++++.|++|.|+|+. .+||.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            68999999999999999999999999999985 5899874

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=98.38  E-value=1.5e-07  Score=79.45  Aligned_cols=33  Identities=30%  Similarity=0.620  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .||+|||||++|+++|++|+++|. +|+|+||++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            489999999999999999999995 799999985

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.2e-07  Score=77.28  Aligned_cols=36  Identities=22%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+||+|||||++|++||.++++.|++|+|+|+.+..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            379999999999999999999999999999986653

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.2e-07  Score=76.37  Aligned_cols=39  Identities=26%  Similarity=0.474  Sum_probs=35.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ++||+|||||++|+++|.++++.|++|+|+|+ +.+||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            47999999999999999999999999999998 4567765

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.9e-07  Score=73.84  Aligned_cols=38  Identities=24%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .+||+|||||++||.||..|++.|++|+|+|+.+..|.
T Consensus         5 ~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~   42 (190)
T d1trba1           5 HSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQ   42 (190)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGG
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCceEEEEeeccccc
Confidence            36899999999999999999999999999998766443

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.30  E-value=3.8e-07  Score=75.78  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=39.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccce
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVG   70 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~   70 (260)
                      ..+||+|||||++|+.+|..+++.|.+|+++|+.+.+||.|.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            357999999999999999999999999999999999999874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.26  E-value=2.8e-07  Score=78.69  Aligned_cols=37  Identities=35%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHH-----HCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELL-----DQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~-----~~G~~v~v~E~~~~~G   66 (260)
                      ..||+|||||++||++|..|+     ++|++|+||||.+.+.
T Consensus         7 ~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           7 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            479999999999999999996     5799999999987653

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.4e-07  Score=79.62  Aligned_cols=39  Identities=23%  Similarity=0.385  Sum_probs=36.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|++||+||+.++++|.+|+|+||.+..||.
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            479999999999999999999999999999999988775

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.22  E-value=7.6e-08  Score=78.13  Aligned_cols=35  Identities=31%  Similarity=0.429  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +||+|||||++||++|+.|+++|++|+++|+...+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~   35 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVY   35 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeec
Confidence            58999999999999999999999988888775443

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.2e-07  Score=77.82  Aligned_cols=39  Identities=36%  Similarity=0.497  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|++||+||+.+++.| +|+|+||.+..||..
T Consensus         7 ~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s   45 (305)
T d1chua2           7 SCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGST   45 (305)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC---
T ss_pred             cCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCch
Confidence            489999999999999999998888 999999999888763

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=98.22  E-value=4.4e-07  Score=78.09  Aligned_cols=36  Identities=31%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      +.||+|||+|++|+++|.+|+++|++|+|+|+....
T Consensus         4 ~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~   39 (379)
T d2f5va1           4 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID   39 (379)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred             cccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCC
Confidence            479999999999999999999999999999986544

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.21  E-value=4.8e-07  Score=71.67  Aligned_cols=36  Identities=17%  Similarity=0.221  Sum_probs=33.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+||+|||||++|+.||..|++.|++|+|+|+....
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            379999999999999999999999999999987654

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.18  E-value=7.4e-07  Score=76.63  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=35.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH----CCCcEEEEcccCcccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD----QGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~----~G~~v~v~E~~~~~GG~~   69 (260)
                      ..||+|||+|++||+||+.+++    +|++|+|+||....||..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s   64 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGA   64 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCST
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChh
Confidence            4799999999999999999975    699999999988876653

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=98.13  E-value=8.6e-07  Score=76.68  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=30.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .+|+|||+|++|+.+|++|+++|++|+|+|+.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            48999999999999999999999999999984

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=98.11  E-value=1e-06  Score=76.29  Aligned_cols=35  Identities=29%  Similarity=0.506  Sum_probs=32.4

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ....||+|||+|.+|+.+|++|+++|++|+|+|+.
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            34589999999999999999999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.10  E-value=1.3e-06  Score=70.47  Aligned_cols=40  Identities=25%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc--------Ccccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR--------SFIGGKV   69 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~--------~~~GG~~   69 (260)
                      .+||+|||||++|+++|.++++.|. .|+|+|+.        +.+||.|
T Consensus         3 ~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~~~~~~~~~lGG~c   51 (238)
T d1aoga1           3 IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTC   51 (238)
T ss_dssp             SBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSSSBTTTBCCTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecccCccccccccccc
Confidence            4899999999999999999999886 68899985        3466664

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.06  E-value=2.3e-06  Score=69.90  Aligned_cols=35  Identities=31%  Similarity=0.436  Sum_probs=32.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+||+|||||+||+.||+.+++.|.++.+++++-.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~   36 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLD   36 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccc
Confidence            48999999999999999999999999999998743

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.05  E-value=1.2e-06  Score=71.36  Aligned_cols=36  Identities=17%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      ..+||+|||+|++|++||..+++.|. .|.|+|+...
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            35899999999999999999999885 6999998765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.04  E-value=3.3e-06  Score=61.49  Aligned_cols=37  Identities=24%  Similarity=0.367  Sum_probs=34.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +++|+|||||+.|+-+|..|++.|.+|+|+|+.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            3789999999999999999999999999999998874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.01  E-value=1.3e-06  Score=71.14  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=33.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC---CcEEEEcccCcccccce
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG---HEVDIYESRSFIGGKVG   70 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G---~~v~v~E~~~~~GG~~~   70 (260)
                      -||+|||+|++|++||.++++.|   ++|+++|+ ..+||.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCceee
Confidence            38999999999999999887755   68999998 56899764

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=3.9e-06  Score=61.16  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +++|+|||||+.|+-+|..|++.|.+|+|+|+.+++.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l   57 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPL   57 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchhh
Confidence            3689999999999999999999999999999988764

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.96  E-value=5.4e-06  Score=60.91  Aligned_cols=39  Identities=23%  Similarity=0.457  Sum_probs=35.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      +.++|+|||||+.|+-+|..|+++|++|+++|+++.+-.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~   67 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMS   67 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecccccc
Confidence            347999999999999999999999999999999987643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.95  E-value=6.3e-06  Score=60.63  Aligned_cols=37  Identities=22%  Similarity=0.316  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||||+.|+-+|..|++.|++|+++|+.+++-
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l   66 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL   66 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCccc
Confidence            4789999999999999999999999999999988763

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.2e-06  Score=71.93  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=35.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--GHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--G~~v~v~E~~~~~GG~   68 (260)
                      ..||+|||+|++||+||+.++++  |.+|+|+||....||.
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~   45 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSH   45 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCc
Confidence            37999999999999999999986  6799999999877766

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.93  E-value=6e-06  Score=59.93  Aligned_cols=37  Identities=22%  Similarity=0.428  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +++++|||||+.|+-+|..|++.|.+|+++|+.+.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            3789999999999999999999999999999998764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.92  E-value=6.8e-06  Score=61.33  Aligned_cols=39  Identities=15%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .++|+|||||+.|+-+|..|++.|.+|+++|+.+.+..+
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc
Confidence            479999999999999999999999999999999987543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.87  E-value=7.8e-06  Score=59.64  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||||..|+-.|..|++.|.+|+|+|+.+++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            378999999999999999999999999999998876

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.86  E-value=5.6e-06  Score=63.44  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~GG   67 (260)
                      .+||+|||||++|+.+|..|++.+.  +|+|+|+++....
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~   41 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYT   41 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccc
Confidence            3799999999999999999999884  8999999876433

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.83  E-value=7.7e-06  Score=59.99  Aligned_cols=35  Identities=26%  Similarity=0.442  Sum_probs=33.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ++|+|||||+.|+-+|..|++.|++|+++|+.+.+
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            68999999999999999999999999999998865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.83  E-value=6.8e-06  Score=71.26  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=31.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .+|++|||+|.+|+.+|.+|+++|++|+|+|+.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            479999999999999999999999999999986

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=1.3e-05  Score=58.84  Aligned_cols=37  Identities=27%  Similarity=0.473  Sum_probs=34.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +++++|||||+.|+-.|..|++.|.+|+|+|+++++-
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            4799999999999999999999999999999988764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=1.4e-05  Score=58.80  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=33.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||||..|+-.|..|++.|.+|+++|+++++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            379999999999999999999999999999998875

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.78  E-value=8.8e-06  Score=71.37  Aligned_cols=37  Identities=27%  Similarity=0.461  Sum_probs=33.3

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~~   64 (260)
                      ..++|++|||||.+|+..|.+|++.| ++|+|+|+...
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            34599999999999999999999998 79999999853

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.73  E-value=1.9e-05  Score=57.59  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++++|||||..|+-.|..|++.|.+|+|+|+.+++-
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll   58 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFL   58 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccC
Confidence            4789999999999999999999999999999988753

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1.9e-05  Score=54.98  Aligned_cols=36  Identities=31%  Similarity=0.421  Sum_probs=32.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||.|.+|+++|..|.++|.+|+++|.+...
T Consensus         5 ~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             CCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            478999999999999999999999999999987654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.66  E-value=1.9e-05  Score=61.23  Aligned_cols=35  Identities=23%  Similarity=0.277  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +++|+|||+|..|++.|..|+++|++|+++++.+.
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            47899999999999999999999999999998643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.63  E-value=1.7e-05  Score=60.92  Aligned_cols=39  Identities=23%  Similarity=0.216  Sum_probs=34.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .++|+|||||..|..+|..|.++|++|+|++++..-...
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~   40 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK   40 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHH
Confidence            479999999999999999999999999999998765444

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.58  E-value=4.4e-05  Score=55.42  Aligned_cols=38  Identities=11%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +.++|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhh
Confidence            35799999999999999999999999999999988653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.58  E-value=2.7e-05  Score=57.07  Aligned_cols=37  Identities=32%  Similarity=0.346  Sum_probs=34.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++++|||||..|+-.|..|++.|.+|+|+|+.+.+-
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIV   61 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccC
Confidence            4789999999999999999999999999999988763

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.57  E-value=6.7e-05  Score=54.85  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=31.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +++++|||||+.|+-.|..|++.|.+|+|++++.
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            3689999999999999999999999999999754

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.53  E-value=2.2e-05  Score=68.53  Aligned_cols=35  Identities=34%  Similarity=0.465  Sum_probs=31.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      ..+|++|||+|.+|+..|.+|++.+ ++|+|+|+..
T Consensus        16 ~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          16 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             CeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            3589999999999999999999976 8999999974

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.52  E-value=5.7e-05  Score=55.52  Aligned_cols=38  Identities=24%  Similarity=0.315  Sum_probs=34.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .++++|||||..|+-.|..+++.|.+|+|+|+.+.+-.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            47899999999999999999999999999999887643

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.47  E-value=4.5e-05  Score=59.93  Aligned_cols=35  Identities=34%  Similarity=0.614  Sum_probs=31.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC--CcEEEEcccCcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG--HEVDIYESRSFI   65 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G--~~v~v~E~~~~~   65 (260)
                      +||+|||||.+|+.+|..|++.+  .+|+++|+++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            58999999999999999999874  589999998765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.44  E-value=6.5e-05  Score=57.79  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGK   68 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~   68 (260)
                      .+|+|||||++|+-+|..|++.|.+++|++..+.....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~   41 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP   41 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccc
Confidence            68999999999999999999999999999887765443

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.37  E-value=3.7e-05  Score=66.28  Aligned_cols=34  Identities=26%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+|++|||+|.+|+.+|.+|+++ ++|+|+|+.+.
T Consensus        26 ~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~   59 (351)
T d1ju2a1          26 SYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSL   59 (351)
T ss_dssp             EEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBC
T ss_pred             CccEEEECccHHHHHHHHHhcCC-CCEEEEecCCC
Confidence            47999999999999999999986 99999999864

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.0001  Score=55.98  Aligned_cols=39  Identities=28%  Similarity=0.337  Sum_probs=34.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKV   69 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~   69 (260)
                      +||+|||+|..|...|..|++.|++|+++.+.+......
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~   39 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV   39 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh
Confidence            589999999999999999999999999999987654433

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.35  E-value=7.2e-05  Score=56.82  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ||+|||||++|+-+|..|++ +.+|+|+|+.+.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccc
Confidence            89999999999999999864 7899999987754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.24  E-value=0.00011  Score=56.84  Aligned_cols=37  Identities=32%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      +.+|+|||||++|+.+|..|++.|.+++|++..+...
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~   39 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAE   39 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecccc
Confidence            4579999999999999999999999998888766554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.18  E-value=0.00018  Score=51.93  Aligned_cols=36  Identities=17%  Similarity=0.195  Sum_probs=30.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ---GHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~---G~~v~v~E~~~~~   65 (260)
                      .++++|||||+.|+-+|..|...   |.+|+++|+.+.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            47899999999999999766654   5689999997765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00021  Score=56.32  Aligned_cols=37  Identities=27%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.-++|+|||||..|..-|..++++|++|+++|.++.
T Consensus         2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChH
Confidence            3457999999999999999999999999999998653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.15  E-value=0.00022  Score=51.27  Aligned_cols=37  Identities=19%  Similarity=0.224  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH---CCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD---QGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~---~G~~v~v~E~~~~~G   66 (260)
                      +++++|||||+.|+-.|..|.+   .|.+|+++|+.+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            3789999999999999976554   488999999987653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.01  E-value=0.00023  Score=56.30  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||.|..||+.|..|+++|++|+++|.+..
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~   34 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSST   34 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence            5799999999999999999999999999998653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.99  E-value=0.00033  Score=51.43  Aligned_cols=34  Identities=24%  Similarity=0.431  Sum_probs=31.9

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|+|+|.-|...|..|.++|++|+++|+++.
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~   34 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKD   34 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChh
Confidence            5899999999999999999999999999999764

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.98  E-value=0.00026  Score=55.44  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      -++|+|||||..|...|..++..|++|+++|.++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3689999999999999999999999999999865

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00049  Score=50.92  Aligned_cols=38  Identities=29%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHH----HCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELL----DQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~----~~G~~v~v~E~~~~~GG   67 (260)
                      .++++|||||++|+-.|..|+    +.|.+|+++|+++.+-.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~   78 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG   78 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc
Confidence            468999999999988888885    35899999999887643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.89  E-value=0.00059  Score=51.33  Aligned_cols=39  Identities=26%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCCCcEEEE--CCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           28 GPKLKVAII--GAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        28 ~~~~~v~VI--GaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .+...|+|+  |+|..|+.+|..|+++|.+|+++|+.+.++
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~   77 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLAN   77 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccc
Confidence            445666666  999999999999999999999999988775

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00046  Score=54.89  Aligned_cols=36  Identities=19%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~~   65 (260)
                      ..+++|||||++|+.+|..|+++|+  +|+++++.+.+
T Consensus         4 ~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           4 HVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             EEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            3679999999999999999999886  59999876653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.79  E-value=0.00075  Score=51.74  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=32.1

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|||+|.+|+.|+....+.|-+|++||.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            45799999999999999999999999999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.78  E-value=0.00054  Score=50.11  Aligned_cols=34  Identities=35%  Similarity=0.346  Sum_probs=31.6

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++++|||.|..|...|..|.++|++|+++|++..
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~   34 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE   34 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH
Confidence            5799999999999999999999999999998754

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.72  E-value=0.0014  Score=49.85  Aligned_cols=43  Identities=26%  Similarity=0.492  Sum_probs=36.0

Q ss_pred             CCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEccc
Q 024958           20 PPEPEHYGGPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESR   62 (260)
Q Consensus        20 ~~~~~~~~~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~   62 (260)
                      |+.+.....+++||.|||+|..|-+.|+.|..+|+  ++.++|.+
T Consensus        10 ~~~~~~~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          10 PVAEEEATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CSSCSCCCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CcCcccccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            44444555667899999999999999999999998  89999875

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.65  E-value=0.00096  Score=50.57  Aligned_cols=33  Identities=30%  Similarity=0.472  Sum_probs=30.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||.|||+|..|.+.|..|.++|++|++++++.
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            579999999999999999999999999999864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.64  E-value=0.0012  Score=51.25  Aligned_cols=36  Identities=25%  Similarity=0.402  Sum_probs=32.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.-+|+|||||.+|+.|+......|-.|++||.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            357999999999999999999999999999997654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0015  Score=48.81  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=31.4

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+||| .|..|.+.|..|.++|++|.++++..
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            47999999 79999999999999999999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.28  E-value=0.001  Score=52.00  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+|||||.-|.+.|..|++.|++|+++.+++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            579999999999999999999999999987643

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.24  E-value=0.0018  Score=49.20  Aligned_cols=33  Identities=33%  Similarity=0.576  Sum_probs=30.1

Q ss_pred             CcEEEE-CCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAII-GAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VI-GaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+|| |+|.-|.+.|..|+++|++|+|..|++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999 779999999999999999999998764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.23  E-value=0.0018  Score=49.96  Aligned_cols=31  Identities=42%  Similarity=0.744  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ++|+|||+|.-|.+.|..|++.|++|+++.+
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            5899999999999999999999999999865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.19  E-value=0.0024  Score=47.72  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=30.3

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .+||.|||+|..|.+.|+.|+.+|+  ++.++|.+.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            4699999999999999999999985  899999654

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.00027  Score=53.47  Aligned_cols=53  Identities=9%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             hhccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhh
Q 024958          173 SLYRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEE  230 (260)
Q Consensus       173 p~~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~  230 (260)
                      |..|++||.+  .+.++|. .+|.....  ..+++|+|+|.|++|.++|..+++.+..
T Consensus         2 Pr~p~IpG~d--~~~V~~a-~d~L~~~~--~~gkrVvVIGgG~~g~d~a~~~~r~G~~   54 (162)
T d1ps9a2           2 PRTPPIDGID--HPKVLSY-LDVLRDKA--PVGNKVAIIGCGGIGFDTAMYLSQPGES   54 (162)
T ss_dssp             ECCCCCBTTT--STTEEEH-HHHHTSCC--CCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred             CCCCCCCCCC--CCCeEEH-HHHhhCcc--ccCCceEEEcCchhHHHHHHHHHHcCCc
Confidence            6778899987  3445554 44433322  3488999999999999999999988654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.09  E-value=0.0066  Score=45.55  Aligned_cols=36  Identities=25%  Similarity=0.313  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      ..++|+|||||-+|+=+|..+.+.|. +|+++++.+.
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            34689999999999999999999985 6889887653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.04  E-value=0.0022  Score=48.50  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=31.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||-|..|...|.+|+++|++|.+++++..
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~   34 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPE   34 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcc
Confidence            5799999999999999999999999999998654

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.03  E-value=0.0037  Score=47.81  Aligned_cols=33  Identities=21%  Similarity=0.612  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||-|..|...|.+|.++|++|.+++++.
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~   34 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTY   34 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCH
Confidence            689999999999999999999999999998753

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.01  E-value=0.0021  Score=50.06  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=29.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|||.|..||.+|..|+ +|++|+.+|-+..
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHH
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHH
Confidence            58999999999999998776 6999999997754

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.00055  Score=50.06  Aligned_cols=55  Identities=18%  Similarity=0.033  Sum_probs=41.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          177 GGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       177 ~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      ++||.+.|.|+-.|-   .-.....-.+|+.|.|+|.|+|+.+.|.+|++.|++|+..
T Consensus         5 ~ipge~~~~gkGV~y---ca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li   59 (126)
T d1fl2a2           5 NVPGEDQYRTKGVTY---CPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL   59 (126)
T ss_dssp             CCTTTTTTBTTTEES---CHHHHGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEE
T ss_pred             CCCCHHHhcCCCEEE---EEecChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEE
Confidence            678999998865442   1111222345999999999999999999999999987764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.87  E-value=0.005  Score=47.07  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.+|.|||-|..|...|.+|.++|++|.+|++...
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~   36 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVS   36 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            36899999999999999999999999999998653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.85  E-value=0.0054  Score=43.40  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|||+|..|...|..|.+.|.+|+++...
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~   44 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4589999999999999999999999999998643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.79  E-value=0.0033  Score=46.85  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=30.5

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      ...++|+|||||..|+..|..|.+.|.+|+|+.
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            456899999999999999999999999999994

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.77  E-value=0.0038  Score=47.16  Aligned_cols=33  Identities=27%  Similarity=0.498  Sum_probs=30.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++|.|||-|..|.+.|.+|.++|++|.+++++.
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            479999999999999999999999999999864

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.61  E-value=0.0074  Score=44.71  Aligned_cols=35  Identities=34%  Similarity=0.415  Sum_probs=30.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~~   64 (260)
                      ++||.|||+|..|.+.|+.|..+++  ++.++|....
T Consensus         1 r~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~   37 (142)
T d1y6ja1           1 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKE   37 (142)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC--
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCC
Confidence            3689999999999999999999987  7999996653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.58  E-value=0.0067  Score=44.91  Aligned_cols=34  Identities=29%  Similarity=0.443  Sum_probs=29.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++||.|||+|.-|.++|+.|..+++ ++.++|...
T Consensus         1 r~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           1 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            4699999999999999999999886 888888644

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.57  E-value=0.0061  Score=45.44  Aligned_cols=34  Identities=29%  Similarity=0.442  Sum_probs=29.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .+||.|||+|..|.++|+.|..+|.  ++.++|.+.
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   36 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            3799999999999999999999885  788887643

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.56  E-value=0.0061  Score=45.49  Aligned_cols=35  Identities=31%  Similarity=0.570  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ..+||.|||||..|.+.|+.|..+|+  ++.++|..+
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            34789999999999999999999986  788888643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.54  E-value=0.01  Score=44.43  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      |+.||.|||+|..|-+.|+.|...++ ++.++|.+.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            56799999999999999999888875 788888644

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.44  E-value=0.0087  Score=44.93  Aligned_cols=34  Identities=26%  Similarity=0.381  Sum_probs=29.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ++||+|||+|..|.+.|+.|...++ ++.++|.+.
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4799999999999999999998886 888998654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.42  E-value=0.0097  Score=43.91  Aligned_cols=33  Identities=30%  Similarity=0.522  Sum_probs=29.5

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||+|||||..|.+.|+.|...|.  ++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            589999999999999999999985  899998765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.41  E-value=0.0099  Score=44.92  Aligned_cols=36  Identities=25%  Similarity=0.535  Sum_probs=31.1

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +.+.||.|||+|..|-+.|+.|..+|+  ++.++|.+.
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~   54 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADT   54 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            344689999999999999999999987  799998653

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0092  Score=46.34  Aligned_cols=36  Identities=33%  Similarity=0.472  Sum_probs=32.1

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      |..+||+|+|| |..|...+.+|.++|++|+++-|+.
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~   37 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcCh
Confidence            45689999996 9999999999999999999998754

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.33  E-value=0.0086  Score=44.50  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=30.2

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||.|||.|..|.+.|..|+++|++++++.+..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            589999999999999999999999999987654

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.23  E-value=0.013  Score=52.13  Aligned_cols=44  Identities=34%  Similarity=0.492  Sum_probs=40.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcccccceeee
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFI   73 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~   73 (260)
                      ..||+|+|.|+.=-..|..|++.|++|+-+|+++.=||.|.++.
T Consensus         6 e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~   49 (491)
T d1vg0a1           6 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS   49 (491)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEC
T ss_pred             ccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCccccee
Confidence            48999999999988888889999999999999999999999763

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.012  Score=44.68  Aligned_cols=35  Identities=31%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|+|||-++-++++.|.+.|.+++|+.|..
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            34789999999999999999999999999997653

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.05  E-value=0.012  Score=43.50  Aligned_cols=33  Identities=30%  Similarity=0.449  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      .||+|||+|..|-++|+.|..+|+  ++.++|.+.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~   36 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   36 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            589999999999999999999987  788888643

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=95.03  E-value=0.011  Score=47.57  Aligned_cols=36  Identities=31%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++||+|+|| |..|-..+..|.++|++|+++.|+..
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            5789999998 99999999999999999999998654

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.00  E-value=0.0097  Score=44.06  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.0

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||.|||+|..|-+.|+.|..+|.  ++.++|.+.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEeccc
Confidence            589999999999999999999886  788888643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.83  E-value=0.00083  Score=48.64  Aligned_cols=57  Identities=9%  Similarity=-0.053  Sum_probs=36.7

Q ss_pred             ccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHH
Q 024958          175 YRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELV  232 (260)
Q Consensus       175 ~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~  232 (260)
                      +|++||.+. .-..++++.+...-...-..+++++|+|+|..|.++|.++.+.+.+|+
T Consensus         1 iP~ipG~~~-~v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vt   57 (121)
T d1d7ya2           1 LPTLQGATM-PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVS   57 (121)
T ss_dssp             CGGGTTCSS-CEEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             CccCCCCCC-CEEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEE
Confidence            478889873 222233322222222222346789999999999999999998776654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.72  E-value=0.016  Score=42.96  Aligned_cols=33  Identities=33%  Similarity=0.485  Sum_probs=29.1

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||+|||| |..|.++|+.|..+|+  ++.++|...
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            58999996 9999999999999995  888998654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.00048  Score=50.36  Aligned_cols=55  Identities=11%  Similarity=0.169  Sum_probs=39.9

Q ss_pred             CCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          177 GGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       177 ~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      ++||.+.|.|+-.|-   .-....+-.+++.|+|+|.|+|+.+.|..|++.|++|+..
T Consensus         2 ~ipge~~~~gkgV~y---ca~cD~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li   56 (126)
T d1trba2           2 GLPSEEAFKGRGVSA---CATSDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLI   56 (126)
T ss_dssp             CCHHHHHTBTTTEES---CHHHHGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEE
T ss_pred             cCCCHHHhcCCCEEE---EEecchHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEE
Confidence            356777788865432   1112223345999999999999999999999999887763

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.014  Score=43.05  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=28.4

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      +||.|||||..|.++|+.|..+++  ++.++|.+.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~   35 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDK   35 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeccc
Confidence            589999999999999999999885  788888543

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.42  E-value=0.00051  Score=49.77  Aligned_cols=56  Identities=14%  Similarity=0.052  Sum_probs=36.5

Q ss_pred             hhhccCCCCCCCCCCCCCCCCccccccc---cccccccccchhHHHHhHHHHHHHHHHhhhhHH
Q 024958          172 QSLYRGGPGKVPLRTDQKTPVKNLFLAG---SYTKQDYIDSMEGPTLSDRQASAYICNAGEELV  232 (260)
Q Consensus       172 ~p~~p~~pG~~~F~G~~~hs~~~yr~~~---~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~  232 (260)
                      +|..|++||.+.    .++. +++....   .+-..++.++|+|+|.+|.++|..+++.+.+|+
T Consensus         1 R~r~p~ipG~e~----~~t~-~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vt   59 (122)
T d1xhca2           1 RAREPQIKGKEY----LLTL-RTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK   59 (122)
T ss_dssp             EECCCCSBTGGG----EECC-CSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCcCCCCccc----eEcc-CCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEE
Confidence            367888999752    2221 2221111   112235678899999999999999998876654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.39  E-value=0.017  Score=40.29  Aligned_cols=34  Identities=9%  Similarity=-0.022  Sum_probs=28.8

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|||+|.+|+-.|..|++.+.++++.-+.+
T Consensus        32 gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          32 GESVLVVGGASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             TCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             CCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4899999999999999999999888776665543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.39  E-value=0.024  Score=42.53  Aligned_cols=36  Identities=22%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|+|+|..|+.++..++..|.+|+++|.++.
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~   61 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPR   61 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHH
Confidence            345799999999999999999999999999997653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.045  Score=38.51  Aligned_cols=41  Identities=24%  Similarity=0.272  Sum_probs=33.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC-cccccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS-FIGGKV   69 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~-~~GG~~   69 (260)
                      ...+|.|||+|.-|.-.|....+.|+++.+++..+ .+...+
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~v   51 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHV   51 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGG
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhc
Confidence            34689999999999999999999999999999764 344433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.34  E-value=0.024  Score=42.52  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=28.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCC--cEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGH--EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~--~v~v~E~~~   63 (260)
                      ++|.|||.|..|-+.|..|.+.|+  +|..+|++.
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~   36 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence            469999999999999999999997  566677754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.33  E-value=0.021  Score=43.17  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ..++|+|||+|-++-++++.|.+.|. +++|+.|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            34789999999999999999999996 899997753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.32  E-value=0.025  Score=42.25  Aligned_cols=35  Identities=26%  Similarity=0.193  Sum_probs=30.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|+|..|+.++..++..|.+|.++++++
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            34689999999999999998888999999998764

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.31  E-value=0.024  Score=42.57  Aligned_cols=36  Identities=28%  Similarity=0.280  Sum_probs=31.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +..+|+|+|+|..|+.++..++..|.+|.+++.++.
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            456899999999999999888888999999987654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.027  Score=42.37  Aligned_cols=36  Identities=28%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +...|+|+|+|..|+.++..+...|. +|++.|.++.
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHH
Confidence            34579999999999999999999998 7999987653

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.16  E-value=0.015  Score=43.15  Aligned_cols=34  Identities=26%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCC--cEEEEcccCcc
Q 024958           32 KVAIIGA-GLAGMSTAVELLDQGH--EVDIYESRSFI   65 (260)
Q Consensus        32 ~v~VIGa-G~aGl~aA~~L~~~G~--~v~v~E~~~~~   65 (260)
                      ||+|||| |..|.+.|+.|..+|+  ++.++|.+..-
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~   38 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP   38 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc
Confidence            7999996 9999999999999987  78888876543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.11  E-value=0.022  Score=42.27  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=30.1

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||.|||+|.-|.+.|..|.+.|+++++++++.
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~   33 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   33 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChH
Confidence            579999999999999999999999999998754

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.95  E-value=0.037  Score=39.94  Aligned_cols=37  Identities=24%  Similarity=0.280  Sum_probs=31.9

Q ss_pred             CCCCcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGL-----------AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~-----------aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++|+|||+|+           ++..++..|++.|+++.++--++.
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~   52 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPA   52 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTT
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchH
Confidence            3458999999986           788899999999999999987764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.044  Score=40.34  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=31.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..|+|+|.|..|...+..|.++|++|+|+|..+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            4569999999999999999999999999999765

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=93.78  E-value=0.03  Score=41.36  Aligned_cols=33  Identities=24%  Similarity=0.350  Sum_probs=29.3

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCC-CcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQG-HEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G-~~v~v~E~~~   63 (260)
                      ++|.+||+|.-|.+.|..|.+.| +++.+++++.
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~   34 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA   34 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence            57999999999999999998887 8999998764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.041  Score=39.49  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=31.9

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|-+.+-.|..|++-..+|+++-+.+.
T Consensus        30 gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          30 GKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             CceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            47999999999999999999999899999987664

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.50  E-value=0.031  Score=45.11  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=31.1

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.||+|+|| |..|...+..|.++|++|+++-|+..
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~   38 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEV   38 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCc
Confidence            568999997 99999999999999999999987543

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.028  Score=41.66  Aligned_cols=28  Identities=43%  Similarity=0.500  Sum_probs=24.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcE
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEV   56 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v   56 (260)
                      ..++|+|||+|..|+-+|..+.+.|.++
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4589999999999999999999999743

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.44  E-value=0.068  Score=38.10  Aligned_cols=36  Identities=17%  Similarity=0.319  Sum_probs=31.5

Q ss_pred             CCCcEEEECCCH-----------HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGL-----------AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~-----------aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|||+|+           ++..++..|++.|++++++--++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPe   49 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPE   49 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChh
Confidence            457999999985           788899999999999999987764

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=93.42  E-value=0.041  Score=39.46  Aligned_cols=35  Identities=31%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .++|+|||+|-+++-.|..|++-..+|+++-|.+.
T Consensus        27 ~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          27 NQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            47999999999999999999999999999987664

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.056  Score=40.41  Aligned_cols=35  Identities=23%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|+|..|+.++..++..|.++++++..+
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            45689999999999999988888999998888654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=93.11  E-value=0.044  Score=41.53  Aligned_cols=36  Identities=25%  Similarity=0.214  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +..+|+|+|||..|+.++..+...|. +|++.+.++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN   64 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccc
Confidence            34689999999999999999988997 7899987653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.04  E-value=0.0021  Score=51.41  Aligned_cols=37  Identities=22%  Similarity=0.221  Sum_probs=34.0

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIG   66 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~G   66 (260)
                      .++|+|||||..|+-+|..|++.|.+|+++++.+.++
T Consensus       180 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         180 EAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             TSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CCceeEecCchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            4689999999999999999999999999999988764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.85  E-value=0.0041  Score=44.48  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=35.4

Q ss_pred             ccCCCCCCCCCCCCCCCCccccccccccccccccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          175 YRGGPGKVPLRTDQKTPVKNLFLAGSYTKQDYIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       175 ~p~~pG~~~F~G~~~hs~~~yr~~~~y~~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      ||++||++.    .+++ .++..   . .+.++++|+|+|..|.++|..+++.+.+|+.
T Consensus         1 ~P~IpG~e~----~~ts-~~~~~---l-~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtl   50 (117)
T d1onfa2           1 FPPVKGIEN----TISS-DEFFN---I-KESKKIGIVGSGYIAVELINVIKRLGIDSYI   50 (117)
T ss_dssp             CCSCTTGGG----CEEH-HHHTT---C-CCCSEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred             CcccCCHhH----cCch-hHHhc---c-CCCCEEEEECCchHHHHHHHHHHhcccccee
Confidence            688999862    2444 32211   1 2257789999999999999999987776653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=92.82  E-value=0.046  Score=41.34  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=30.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|+|+|-++-++++.|.+.+.+++|+-|+.
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            34789999999999999999999888999997753

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.66  E-value=0.065  Score=39.35  Aligned_cols=30  Identities=27%  Similarity=0.424  Sum_probs=26.9

Q ss_pred             cEEEEC-CCHHHHHHHHHHHHCCC--cEEEEcc
Q 024958           32 KVAIIG-AGLAGMSTAVELLDQGH--EVDIYES   61 (260)
Q Consensus        32 ~v~VIG-aG~aGl~aA~~L~~~G~--~v~v~E~   61 (260)
                      ||.||| +|..|-++|+.|..+++  ++.++|.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            799999 69999999999999987  6888874

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=92.55  E-value=0.077  Score=40.33  Aligned_cols=35  Identities=20%  Similarity=0.330  Sum_probs=30.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      .++|+|||+|-+|-++++.|.+.|. +++|+.|...
T Consensus        18 ~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~   53 (182)
T d1vi2a1          18 GKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE   53 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSST
T ss_pred             CCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchH
Confidence            4799999999999999999999987 7888887654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.54  E-value=0.054  Score=40.19  Aligned_cols=35  Identities=26%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|+|..|+.++..+...|.+|.+.+.++
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~   61 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD   61 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH
Confidence            45689999999999999999999999999988654

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.25  E-value=0.081  Score=39.95  Aligned_cols=35  Identities=23%  Similarity=0.215  Sum_probs=29.7

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +...|+|+|+|..|+.++..++..|. +|.+.+.++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~   62 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP   62 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh
Confidence            44689999999999999998888896 788888754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=92.06  E-value=0.078  Score=39.59  Aligned_cols=34  Identities=29%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ..++|+|||+|-.|-..+..|...|. +++|+-|.
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            45789999999999999999999997 68888764

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.95  E-value=0.085  Score=38.05  Aligned_cols=36  Identities=31%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .++|+|||+|-+.+-.|..|++--.+|+++-+.+.+
T Consensus        34 gk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~   69 (130)
T d1vdca2          34 NKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF   69 (130)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccc
Confidence            478999999999999999999988999999887764

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.072  Score=34.99  Aligned_cols=34  Identities=18%  Similarity=0.030  Sum_probs=29.8

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|.|||+|.=|-=.+....+.|+++.+++-.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            5799999999999888888889999999986543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.71  E-value=0.069  Score=40.38  Aligned_cols=33  Identities=27%  Similarity=0.323  Sum_probs=27.8

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..++|+|||+|-++-++++.|.+.| ++.|+-|.
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            3478999999999999999998777 78888764

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=0.1  Score=38.30  Aligned_cols=33  Identities=33%  Similarity=0.512  Sum_probs=26.7

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHH-CC--CcEEEEcccC
Q 024958           31 LKVAIIG-AGLAGMSTAVELLD-QG--HEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~-~G--~~v~v~E~~~   63 (260)
                      +||.||| +|..|-+.|+.|.. .+  .++.++|..+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            5899999 59999999998864 34  5899998654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.28  E-value=0.077  Score=41.04  Aligned_cols=35  Identities=20%  Similarity=0.475  Sum_probs=30.4

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..++|+|||+|-+|.=+|+.|++.+.+++++=+..
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            45899999999999999999999998887776543

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.27  E-value=0.14  Score=38.50  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=29.9

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +...|+|+|+|..|+.++..++..|. .|++.|.++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~   64 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence            44679999999999999999999997 5777787553

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.11  Score=42.54  Aligned_cols=32  Identities=28%  Similarity=0.593  Sum_probs=29.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ++||+|.|| |..|...+..|.++|++|+++++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            478999987 89999999999999999999975

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.12  Score=38.86  Aligned_cols=35  Identities=26%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|+|||-|..|-..|.+|+..|.+|+++|..+
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            35789999999999999999999999999999865

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=91.09  E-value=0.1  Score=35.50  Aligned_cols=34  Identities=32%  Similarity=0.410  Sum_probs=29.6

Q ss_pred             CCcEEEECCCHHHHHH-HHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGLAGMST-AVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~a-A~~L~~~G~~v~v~E~~~   63 (260)
                      .++|-+||-|-+|+++ |..|.++|++|+-.|...
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~   42 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   42 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence            4789999999999887 899999999999888653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.06  E-value=0.068  Score=42.53  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=30.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+|+|| |..|-..+..|.++|++|..+++.+
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            68999998 9999999999999999999998764

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.86  E-value=0.13  Score=42.81  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=29.8

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|+|| |..|-..+..|.++|++|+++++.
T Consensus        15 nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          15 NLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            478999984 999999999999999999999764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=90.77  E-value=0.12  Score=42.74  Aligned_cols=31  Identities=39%  Similarity=0.735  Sum_probs=28.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      +||+|+|| |..|-..+..|.++|++|+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            57999986 89999999999999999999975

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.53  E-value=0.15  Score=39.08  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=28.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +...|+|+|+|..|+.++..++..|. .|.+.+..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc
Confidence            45689999999999999998888776 677877654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.46  E-value=0.15  Score=40.19  Aligned_cols=33  Identities=24%  Similarity=0.301  Sum_probs=25.9

Q ss_pred             CcEE-EECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVA-IIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~-VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +||+ |.|| +-.|++.|.+|+++|.+|.+.++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3554 4565 4469999999999999999998764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=90.41  E-value=0.17  Score=41.83  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++.|+|+|| |..|-..+..|.++|++|+++=|+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            3578999996 999999999999999999999764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=90.37  E-value=0.21  Score=37.99  Aligned_cols=36  Identities=25%  Similarity=0.334  Sum_probs=31.0

Q ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ...++|+|.|| |-.|...|..|+++|.+|+++.++.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            34588999995 7789999999999999999998764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.21  E-value=0.2  Score=37.69  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=30.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      ...|+|+|+|..|+.++..++..|. +|.++|.++.
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~   65 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD   65 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH
Confidence            3569999999999999999999994 7999997653

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.87  E-value=0.017  Score=42.06  Aligned_cols=32  Identities=9%  Similarity=0.117  Sum_probs=29.2

Q ss_pred             ccccccchhHHHHhHHHHHHHHHHhhhhHHHH
Q 024958          203 KQDYIDSMEGPTLSDRQASAYICNAGEELVAL  234 (260)
Q Consensus       203 ~~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~  234 (260)
                      ++++.|+|+|.|+|+.+-|..|++.|++|+..
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li   63 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKYGSKVYII   63 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTTSSEEEEE
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCCCCcEEEE
Confidence            34999999999999999999999999998875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.78  E-value=0.15  Score=38.25  Aligned_cols=36  Identities=28%  Similarity=0.245  Sum_probs=33.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|+|+|=|..|-.+|.+|+..|..|+|.|..+.
T Consensus        22 aGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi   57 (163)
T d1v8ba1          22 SGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI   57 (163)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCEEEEecccccchhHHHHHHhCCCEEEEEecCch
Confidence            358999999999999999999999999999998764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=89.29  E-value=0.21  Score=37.41  Aligned_cols=36  Identities=22%  Similarity=0.257  Sum_probs=29.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      .+...|+|+|+|..|+.++..++..|. +|.+.+.++
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~   62 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK   62 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH
Confidence            344679999999999999999998986 688887654

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.27  E-value=0.2  Score=37.42  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=27.9

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEE-EEcccC
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVD-IYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~-v~E~~~   63 (260)
                      .+..+|+|+|+|..|+.++..+...|..++ +.+.++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~   63 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE   63 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH
Confidence            345689999999999999988888887554 555443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.87  E-value=0.22  Score=40.29  Aligned_cols=34  Identities=26%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ++|+|.|| |..|-..+.+|.++|++|..+++...
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            57999987 99999999999999999999987653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.75  E-value=0.2  Score=42.07  Aligned_cols=30  Identities=37%  Similarity=0.555  Sum_probs=28.0

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      +||+|.|| |..|-..+..|.++|++|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            68999986 8999999999999999999996

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.61  E-value=0.19  Score=39.81  Aligned_cols=33  Identities=21%  Similarity=0.344  Sum_probs=29.5

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-cEEEEccc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~   62 (260)
                      ..+|+|||+|-.|-.+|..|++.|. +++|+|..
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4789999999999999999999997 88888743

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.54  E-value=0.076  Score=38.03  Aligned_cols=36  Identities=19%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             CCcEEEECCCHHHHHHHHHHHH-CCCcEE-EEcccCcc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLD-QGHEVD-IYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~-~G~~v~-v~E~~~~~   65 (260)
                      +.+|+|+|||-+|-+.+..+.+ .|++++ .||-++..
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k   40 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEK   40 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTT
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHh
Confidence            4689999999999988776643 466666 44544443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=88.44  E-value=0.24  Score=40.64  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             CCcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|.| +|..|...+..|.++|++|.++.+..
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            37999998 48999999999999999999998754

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.90  E-value=0.27  Score=40.01  Aligned_cols=34  Identities=32%  Similarity=0.286  Sum_probs=29.6

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +++|+|.|| |..|-..+..|.++|++|..+++..
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            357788876 9999999999999999999999753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.37  Score=39.51  Aligned_cols=34  Identities=29%  Similarity=0.399  Sum_probs=29.9

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++||+|.|| |..|-..+..|.++|++|+++++..
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~   36 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH   36 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            368999986 9999999999999999999998643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.71  E-value=0.39  Score=35.48  Aligned_cols=36  Identities=17%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +...|+|+|+|..|+.++..++..|- +|++.+.++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~   64 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD   64 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHH
Confidence            44579999999999999999988875 6888887653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.66  E-value=0.36  Score=38.11  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=29.1

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|+|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            346788888865 49999999999999999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.65  E-value=0.23  Score=38.86  Aligned_cols=34  Identities=18%  Similarity=0.059  Sum_probs=29.0

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+|+|.||+- .|.+.|..|+++|++|.+++++.
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            35799998865 49999999999999999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=87.51  E-value=0.28  Score=36.38  Aligned_cols=35  Identities=26%  Similarity=0.219  Sum_probs=28.2

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +...|+|+|+|..|+.++..++..|. .|++.+.++
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            44679999999999999988887785 666777654

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.27  E-value=0.51  Score=37.98  Aligned_cols=33  Identities=18%  Similarity=0.094  Sum_probs=26.7

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|.|| |-.|.+.|..|+++|.+|.+.+++.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            45566664 5569999999999999999998865

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=87.06  E-value=0.42  Score=31.82  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CcEEEECCCHHHHHH-HHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGLAGMST-AVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~aGl~a-A~~L~~~G~~v~v~E~~~   63 (260)
                      +||-+||-|-+|+++ |..|.++|++|+--|...
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            578899988888865 788899999999888653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=87.05  E-value=0.38  Score=38.50  Aligned_cols=36  Identities=22%  Similarity=0.146  Sum_probs=28.8

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..+.|+|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADD   41 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            345677777755 599999999999999999988653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.02  E-value=0.32  Score=38.12  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=28.9

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .++|+|.||+- .|.+.|..|+++|.+|.++++..
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            47899999854 59999999999999999987654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=86.96  E-value=0.39  Score=37.99  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=28.7

Q ss_pred             CCCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ...+-++|.||+- .|.+.|..|+++|.+|.+.++++
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~   39 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVP   39 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            3445667778754 59999999999999999998765

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=86.94  E-value=0.47  Score=38.94  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=28.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcc
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      +.++|+|.|| |..|...+..|.++|++|..+-+
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR   43 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR   43 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            3589999986 88999999999999999987654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=86.89  E-value=0.3  Score=38.83  Aligned_cols=34  Identities=35%  Similarity=0.499  Sum_probs=27.3

Q ss_pred             CcEE-EECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVA-IIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~-VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      |||+ |.||+- .|.+.|..|+++|.+|.+..++..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~   36 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDA   36 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            5774 557754 599999999999999999988653

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.64  E-value=0.17  Score=37.29  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=21.0

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCC
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQG   53 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G   53 (260)
                      +.||+|||| |..|-+.|+.|...+
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHHH
Confidence            469999996 999999999998754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=86.35  E-value=0.51  Score=34.95  Aligned_cols=36  Identities=17%  Similarity=0.142  Sum_probs=29.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~~   64 (260)
                      +...|+|+|+|..|+.++..++..|. .|.+.+.++.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~   64 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD   64 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH
Confidence            34569999999999999999999984 7888876553

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.30  E-value=0.28  Score=39.35  Aligned_cols=36  Identities=28%  Similarity=0.220  Sum_probs=27.4

Q ss_pred             CCCCcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccC
Q 024958           28 GPKLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        28 ~~~~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ...+.|+|.||+ -.|.+.|..|+++|.+|.+..++.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            344666666754 458899999999999999987653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=86.24  E-value=0.83  Score=34.38  Aligned_cols=37  Identities=24%  Similarity=0.232  Sum_probs=33.0

Q ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           28 GPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        28 ~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ...++|.|||.|..|-..|..+..-|.+|..+++...
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccccc
Confidence            4468899999999999999999999999999997654

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=86.06  E-value=0.22  Score=36.49  Aligned_cols=28  Identities=32%  Similarity=0.277  Sum_probs=24.6

Q ss_pred             cEEEECCCHHHHHHHHHHHHCCCcEEEE
Q 024958           32 KVAIIGAGLAGMSTAVELLDQGHEVDIY   59 (260)
Q Consensus        32 ~v~VIGaG~aGl~aA~~L~~~G~~v~v~   59 (260)
                      ||.+||-|..|...|.+|.+.|+.+..+
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~   29 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLVWN   29 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEEEC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEEEe
Confidence            6999999999999999999999876443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=0.4  Score=39.77  Aligned_cols=33  Identities=33%  Similarity=0.351  Sum_probs=28.1

Q ss_pred             CcEEEEC-CCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIG-AGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIG-aG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.|+|.| +|..|-..+..|.++|++|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5667888 69999999999999999999999854

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.99  E-value=0.43  Score=38.33  Aligned_cols=36  Identities=19%  Similarity=0.068  Sum_probs=29.6

Q ss_pred             CCCCCcEEEECCC---HHHHHHHHHHHHCCCcEEEEccc
Q 024958           27 GGPKLKVAIIGAG---LAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        27 ~~~~~~v~VIGaG---~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ....+.++|.||+   -.|.+.|..|+++|.+|.|..+.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~   43 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV   43 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence            3455788999975   47999999999999999988654

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=85.94  E-value=0.31  Score=37.83  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=27.3

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      |.++|.||+ -.|.+.|..|+++|.+|.+.+++..
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            456666774 4599999999999999999998654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.93  E-value=0.29  Score=39.04  Aligned_cols=35  Identities=11%  Similarity=0.221  Sum_probs=28.8

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .|.|+|.||+- .|.+.|..|+++|.+|.+..++..
T Consensus         9 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           9 NKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35677778765 599999999999999999988654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=85.79  E-value=0.43  Score=37.90  Aligned_cols=36  Identities=17%  Similarity=0.145  Sum_probs=29.7

Q ss_pred             CCcEEEECC-C--HHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGA-G--LAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGa-G--~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+.++|.|| |  -.|.+.|..|+++|.+|.|..+++..
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            467888886 3  37999999999999999999987643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.78  E-value=0.42  Score=37.61  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCcccc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSFIGG   67 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~~GG   67 (260)
                      .+.|+|.||+- .|.+.|..|+++|.+|.+.+++.....
T Consensus         7 gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           7 SRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            35677777764 599999999999999999998765543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=85.62  E-value=0.24  Score=37.24  Aligned_cols=35  Identities=34%  Similarity=0.566  Sum_probs=24.0

Q ss_pred             CCCcEEEECCCHHHHHHHH--HHHHC----CCcEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAV--ELLDQ----GHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~--~L~~~----G~~v~v~E~~~   63 (260)
                      |++||+|||||-.|.+.++  .|.+.    +.++.++|.+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~   41 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDE   41 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCH
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCc
Confidence            5789999999998866543  23322    34788887653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.49  E-value=0.42  Score=35.21  Aligned_cols=35  Identities=17%  Similarity=0.171  Sum_probs=28.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +..+|+|+|+ |..|+.++..+...|. +|.+.+.++
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~   63 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE   63 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence            4467999995 9999999988888884 888888764

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.43  E-value=0.46  Score=38.77  Aligned_cols=33  Identities=39%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             CcE-EEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKV-AIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v-~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +|| +|.|| |..|-..+..|.++|++|..+++..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            578 68876 8999999999999999999998854

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.40  E-value=0.45  Score=36.08  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEE
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIY   59 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~   59 (260)
                      +++|+|+|| |..|-..+..|.++|+.+.|+
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~   32 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVI   32 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEE
Confidence            379999999 999999999999999844333

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.28  E-value=0.41  Score=37.80  Aligned_cols=34  Identities=26%  Similarity=0.335  Sum_probs=28.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         5 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           5 GLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36678888764 59999999999999999998764

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.18  E-value=0.098  Score=40.88  Aligned_cols=24  Identities=4%  Similarity=-0.110  Sum_probs=21.2

Q ss_pred             ccccccchhHHHHhHHHHHHHHHH
Q 024958          203 KQDYIDSMEGPTLSDRQASAYICN  226 (260)
Q Consensus       203 ~~g~~v~vvG~g~Sg~qia~el~~  226 (260)
                      ..++.|+|||.||.+.|+|.-+++
T Consensus        37 ~~gk~VvVIGgGNvAlD~AR~ll~   60 (216)
T d1lqta1          37 LSGARAVVIGNGNVALDVARILLT   60 (216)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHS
T ss_pred             ccCceEEEECCCchhHhhhhhhcc
Confidence            458899999999999999998874

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=85.11  E-value=0.32  Score=39.23  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ++||+|.|| |.-|-..+..|.++|+.++++....
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~   36 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD   36 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch
Confidence            578999987 9999999999999999998886544

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.99  E-value=0.36  Score=36.55  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=26.5

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYE   60 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E   60 (260)
                      .++|+|.|| |..|...+..|.++|++|.++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~   34 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG   34 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE
Confidence            468999995 9999999999999998866653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.93  E-value=0.47  Score=37.21  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=27.4

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +-++|.||+- .|.+.|.+|+++|++|.+..++..
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChH
Confidence            4456677755 589999999999999999988754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.77  E-value=0.51  Score=36.87  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.|+|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         4 gK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           4 DKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46788888754 59999999999999999998864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.62  E-value=0.45  Score=37.71  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=28.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35677788755 59999999999999999998764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.54  E-value=0.55  Score=36.96  Aligned_cols=35  Identities=20%  Similarity=0.155  Sum_probs=28.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         5 gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRATLELFAKEGARLVACDIEEG   40 (242)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35677778754 699999999999999999988653

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.51  E-value=0.51  Score=36.74  Aligned_cols=35  Identities=26%  Similarity=0.198  Sum_probs=29.2

Q ss_pred             CCcEEEECCCHHHHHHHHHHHHC--------------------C-CcEEEEcccCc
Q 024958           30 KLKVAIIGAGLAGMSTAVELLDQ--------------------G-HEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~~~--------------------G-~~v~v~E~~~~   64 (260)
                      .++|+|||+|-.++=+|..|.+.                    | .+|+|+.+...
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcCh
Confidence            58999999999999999999873                    5 48888877653

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.34  Score=38.80  Aligned_cols=34  Identities=26%  Similarity=0.273  Sum_probs=28.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.|+|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46677778766 49999999999999999998764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.34  E-value=0.48  Score=37.73  Aligned_cols=34  Identities=21%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            36678888865 59999999999999999998764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.30  E-value=0.58  Score=37.65  Aligned_cols=30  Identities=30%  Similarity=0.522  Sum_probs=27.2

Q ss_pred             cEEEECC-CHHHHHHHHHHHHCCCcEEEEcc
Q 024958           32 KVAIIGA-GLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        32 ~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ||+|.|| |..|-..+..|.++|++|+++++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            7888876 99999999999999999999974

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=84.30  E-value=0.57  Score=37.24  Aligned_cols=35  Identities=23%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (260)
T d1zema1           5 GKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNRE   40 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35667778755 599999999999999999988643

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.99  E-value=0.59  Score=36.85  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CCCcEEEECCC---HHHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           29 PKLKVAIIGAG---LAGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        29 ~~~~v~VIGaG---~aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      ..+.++|.||+   -.|.+.|.+|+++|.+|.+..+++..
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~   46 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL   46 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            34678888863   26999999999999999888776543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.99  E-value=0.64  Score=37.95  Aligned_cols=33  Identities=21%  Similarity=0.175  Sum_probs=29.3

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .++|+|.|| |..|-..+..|.++|++|.++++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            467899876 999999999999999999999863

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.88  E-value=0.98  Score=34.75  Aligned_cols=21  Identities=29%  Similarity=0.433  Sum_probs=19.1

Q ss_pred             CCcEEEECCCHHHHHHHHHHH
Q 024958           30 KLKVAIIGAGLAGMSTAVELL   50 (260)
Q Consensus        30 ~~~v~VIGaG~aGl~aA~~L~   50 (260)
                      .++|+|||+|-.++=+|..|.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            479999999999999998877

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.83  E-value=0.046  Score=41.80  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=24.5

Q ss_pred             cccchhHHHHhHHHHHHHHHHhhhhHHH
Q 024958          206 YIDSMEGPTLSDRQASAYICNAGEELVA  233 (260)
Q Consensus       206 ~~v~vvG~g~Sg~qia~el~~~a~~v~~  233 (260)
                      |=|+|||+|.+|..+|..|++.+.+|++
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~~V~v   33 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGKKVLH   33 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence            3378899999999999999998888765

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.81  E-value=0.56  Score=37.11  Aligned_cols=35  Identities=20%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35677777654 599999999999999999988654

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.69  E-value=0.36  Score=35.40  Aligned_cols=24  Identities=29%  Similarity=0.429  Sum_probs=21.4

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGH   54 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~   54 (260)
                      .||+|||| |..|-+.|+.|+..++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l   29 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEM   29 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccc
Confidence            59999997 9999999999998753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.67  E-value=0.7  Score=34.11  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=28.7

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +..+|+|+|| |..|+.+...+...|.+|++...++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~   63 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE   63 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccc
Confidence            3457999996 9999998888888899998887543

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.57  E-value=0.46  Score=38.09  Aligned_cols=34  Identities=29%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35566667654 58999999999999999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.47  E-value=0.66  Score=36.85  Aligned_cols=35  Identities=31%  Similarity=0.404  Sum_probs=28.3

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35567778765 499999999999999999987653

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.45  E-value=0.4  Score=38.12  Aligned_cols=33  Identities=21%  Similarity=0.236  Sum_probs=27.6

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5677778754 59999999999999999998864

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=83.33  E-value=0.65  Score=37.23  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=28.0

Q ss_pred             CCcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.|+|.||+ -.|.+.|..|+++|.+|.+.+++.
T Consensus         5 gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           5 GEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3567777875 459999999999999999998764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.30  E-value=0.47  Score=37.72  Aligned_cols=33  Identities=18%  Similarity=0.258  Sum_probs=25.6

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|.||+- .|++.|..|+++|.+|.+..+++
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            3344556544 58999999999999999998764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.19  E-value=0.69  Score=36.19  Aligned_cols=35  Identities=31%  Similarity=0.431  Sum_probs=29.6

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      ...+|+|.|||-+|+..|..|.+.|. ++.++|+..
T Consensus        25 ~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          25 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hhcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            45789999999999999999988875 777888754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.12  E-value=0.84  Score=34.87  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=32.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      ..++|.|||.|..|-..|..|..-|.+|..+++...
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccc
Confidence            357899999999999999999989999999997644

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.05  E-value=0.54  Score=37.28  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=26.8

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            34556667654 58899999999999999998764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.00  E-value=0.57  Score=37.19  Aligned_cols=33  Identities=24%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +-|+|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4577777765 49999999999999999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=82.90  E-value=0.57  Score=37.24  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=29.3

Q ss_pred             CCCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ..+.|+|.||.- .|.+.|..|+++|.+|.+..++.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            346788888654 59999999999999999999865

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=82.68  E-value=0.59  Score=37.15  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=28.5

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   43 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQK   43 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            35677778764 599999999999999999987643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=0.056  Score=37.98  Aligned_cols=30  Identities=10%  Similarity=-0.015  Sum_probs=24.9

Q ss_pred             ccccccchhHHHHhHHHHHHHHHHhhhhHH
Q 024958          203 KQDYIDSMEGPTLSDRQASAYICNAGEELV  232 (260)
Q Consensus       203 ~~g~~v~vvG~g~Sg~qia~el~~~a~~v~  232 (260)
                      ...++++|+|+|..|.++|..+.+.+.+|+
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vt   48 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTH   48 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEE
Confidence            345778899999999999999998776654

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.61  E-value=0.78  Score=37.28  Aligned_cols=33  Identities=24%  Similarity=0.325  Sum_probs=27.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEccc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+..++
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~   45 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGSNVVIASRK   45 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            45667777755 5899999999999999999875

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.57  E-value=0.14  Score=40.21  Aligned_cols=26  Identities=4%  Similarity=-0.105  Sum_probs=22.8

Q ss_pred             cccccccchhHHHHhHHHHHHHHHHh
Q 024958          202 TKQDYIDSMEGPTLSDRQASAYICNA  227 (260)
Q Consensus       202 ~~~g~~v~vvG~g~Sg~qia~el~~~  227 (260)
                      ...++.|+|+|.||.+.|+|..+++.
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cccCceEEEECCchhHHHHHHHHhcC
Confidence            34589999999999999999999874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.52  E-value=0.62  Score=36.84  Aligned_cols=34  Identities=24%  Similarity=0.198  Sum_probs=27.4

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      |.++|.||+- .|.+.|..|+++|.+|.+..++..
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4566667754 599999999999999999987643

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.30  E-value=0.68  Score=36.51  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=27.6

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35566668754 59999999999999999998865

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=82.25  E-value=0.65  Score=36.54  Aligned_cols=34  Identities=12%  Similarity=0.078  Sum_probs=27.0

Q ss_pred             CCCcEEEECC-CH--HHHHHHHHHHHCCCcEEEEccc
Q 024958           29 PKLKVAIIGA-GL--AGMSTAVELLDQGHEVDIYESR   62 (260)
Q Consensus        29 ~~~~v~VIGa-G~--aGl~aA~~L~~~G~~v~v~E~~   62 (260)
                      ..+.|+|.|| |-  .|.+.|..|+++|.+|.+..++
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~   41 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFD   41 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4567888885 43  5888999999999999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.81  Score=36.18  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=28.4

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            45677778754 599999999999999999988643

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.11  E-value=1.4  Score=33.13  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=32.6

Q ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           27 GGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        27 ~~~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ....++|.|||-|..|-..|..|..-|.+|..+++..
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            3456899999999999999999999999999998754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=81.86  E-value=0.79  Score=37.26  Aligned_cols=33  Identities=33%  Similarity=0.489  Sum_probs=28.3

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +||+|+|| |..|-..+..|.++|+ +|.++++..
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            57999987 8999999999999995 899997643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.73  E-value=0.84  Score=33.47  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=27.5

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-cEEEEcccC
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGH-EVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~-~v~v~E~~~   63 (260)
                      +...|+|+|+|..|+.++..++..|. .|.+.+.++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~   63 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINK   63 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccH
Confidence            44579999999999999998888896 566666543

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.62  E-value=0.79  Score=37.49  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=26.5

Q ss_pred             CcEEEECC-CHHHHHHHHHHHHCCCcEEEEcc
Q 024958           31 LKVAIIGA-GLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        31 ~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      |-|+|.|| |..|-..+..|.++|++|+++++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            34667776 89999999999999999999974

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.60  E-value=0.71  Score=36.41  Aligned_cols=33  Identities=27%  Similarity=0.310  Sum_probs=27.3

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +-|+|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4456668766 49999999999999999999865

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.51  E-value=0.74  Score=36.56  Aligned_cols=34  Identities=15%  Similarity=0.177  Sum_probs=27.1

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      .+.|+|.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            35566667654 58899999999999999998864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=81.34  E-value=1  Score=33.76  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.4

Q ss_pred             CCcEEEECC-CHHHHHHHHHHHHC
Q 024958           30 KLKVAIIGA-GLAGMSTAVELLDQ   52 (260)
Q Consensus        30 ~~~v~VIGa-G~aGl~aA~~L~~~   52 (260)
                      ..+|+|+|| |..|-+.++.|++.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g   47 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASG   47 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcC
Confidence            468999997 99999999999875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.11  E-value=0.63  Score=37.30  Aligned_cols=33  Identities=30%  Similarity=0.351  Sum_probs=26.6

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +.++|.||+- .|.+.|..|+++|.+|.+.+++.
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4566667654 58899999999999999998764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.09  E-value=0.56  Score=36.99  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=26.5

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.++|.||+ -.|.+.|..|+++|.+|.+..++..
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~   41 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINES   41 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            445555654 4599999999999999999988753

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=81.08  E-value=0.55  Score=36.98  Aligned_cols=34  Identities=21%  Similarity=0.120  Sum_probs=26.5

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.++|.||+- .|.+.|..|+++|.+|.+.+++..
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~   39 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSEN   39 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            3445557654 489999999999999999988653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=81.01  E-value=0.67  Score=36.33  Aligned_cols=36  Identities=11%  Similarity=0.181  Sum_probs=28.2

Q ss_pred             CCcEEEECCCH---HHHHHHHHHHHCCCcEEEEcccCcc
Q 024958           30 KLKVAIIGAGL---AGMSTAVELLDQGHEVDIYESRSFI   65 (260)
Q Consensus        30 ~~~v~VIGaG~---aGl~aA~~L~~~G~~v~v~E~~~~~   65 (260)
                      .+.|+|.||+-   .|.+.|..|+++|.+|.+..+++..
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~   43 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL   43 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            46677777643   4778999999999999998887553

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.00  E-value=0.78  Score=33.89  Aligned_cols=35  Identities=29%  Similarity=0.248  Sum_probs=28.6

Q ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCCcEEEEcccC
Q 024958           29 PKLKVAIIGA-GLAGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        29 ~~~~v~VIGa-G~aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      +...|+|.|| |..|+.+...+...|.+|.+...++
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~   62 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP   62 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence            4467899896 9999999888888899998887654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.91  E-value=0.93  Score=34.77  Aligned_cols=33  Identities=24%  Similarity=0.302  Sum_probs=30.0

Q ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCcEEEEcc
Q 024958           29 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYES   61 (260)
Q Consensus        29 ~~~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~   61 (260)
                      ..++|+|.|-|-.|..+|..|.+.|.+|++.|-
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~   58 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVADT   58 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEecc
Confidence            347899999999999999999999999998774

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=80.61  E-value=0.74  Score=36.34  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=26.6

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.++|.||+- .|.+.|..|+++|.+|.+..++..
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   41 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4555556644 588999999999999999987653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=80.51  E-value=0.19  Score=33.53  Aligned_cols=32  Identities=13%  Similarity=0.069  Sum_probs=28.4

Q ss_pred             cccccchhHHHHhHHHHHHHHHHhhhhHHHHH
Q 024958          204 QDYIDSMEGPTLSDRQASAYICNAGEELVALR  235 (260)
Q Consensus       204 ~g~~v~vvG~g~Sg~qia~el~~~a~~v~~~~  235 (260)
                      +++++.|+|.|-||.-+|..|.+.+.+|+++-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D   35 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMD   35 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEee
Confidence            38889999999999999999999998887654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=80.21  E-value=0.84  Score=35.77  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=29.0

Q ss_pred             CCcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           30 KLKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        30 ~~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      .+.++|.||+- .|.+.|..|+++|.+|.+..++..
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~   40 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGASLVAVDREER   40 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46677778865 599999999999999999987654

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.14  E-value=0.55  Score=37.30  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=26.7

Q ss_pred             CcEEEECCCH-HHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGL-AGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.++|.||+- .|.+.|..|+++|.+|.+..++..
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINAD   46 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            4556666644 599999999999999999987643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.09  E-value=0.25  Score=36.39  Aligned_cols=30  Identities=3%  Similarity=-0.124  Sum_probs=24.4

Q ss_pred             cccccchhHHHHhHHHHHHHHHHh-hhhHHH
Q 024958          204 QDYIDSMEGPTLSDRQASAYICNA-GEELVA  233 (260)
Q Consensus       204 ~g~~v~vvG~g~Sg~qia~el~~~-a~~v~~  233 (260)
                      .++.|+|+|.|+||+++|..+.+. |++|++
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~v   74 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFL   74 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeE
Confidence            366689999999999999998887 555644

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.06  E-value=0.71  Score=36.66  Aligned_cols=34  Identities=26%  Similarity=0.245  Sum_probs=25.9

Q ss_pred             CcEEEECCC-HHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAG-LAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG-~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      |-++|.||+ -.|.+.|..|+++|.+|.+..++..
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   40 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAE   40 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            334555654 4599999999999999999988643

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=80.04  E-value=0.58  Score=32.83  Aligned_cols=32  Identities=25%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEcccCc
Q 024958           31 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSF   64 (260)
Q Consensus        31 ~~v~VIGaG~aGl~aA~~L~~~G~~v~v~E~~~~   64 (260)
                      +.|+|+|.|..|...+..|.  |.++.++|.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            46899999999999999884  667888887665

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.01  E-value=0.99  Score=35.60  Aligned_cols=32  Identities=28%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             cEE-EECCCH-HHHHHHHHHHHCCCcEEEEcccC
Q 024958           32 KVA-IIGAGL-AGMSTAVELLDQGHEVDIYESRS   63 (260)
Q Consensus        32 ~v~-VIGaG~-aGl~aA~~L~~~G~~v~v~E~~~   63 (260)
                      ||+ |.||+- .|.+.|..|+++|.+|.+..++.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            564 456654 59999999999999999998764