Citrus Sinensis ID: 025035

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHcccHHHHHHccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEcccccHHHHHHHHHHHccccccccccccccccccccHHHHccccccccEEEEccccHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccEEEEcccccccccccEEcccHHHHHHHHHccccEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHccccccccEEcccccEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHccccHHcccHHHHccccccccHHHccccccccEEEccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHccEEEEEEccccc
Coil and Loop (DISEMBL)
magfrlppeepevspqqppqqvrvagdlvsddersvaadSWSIkseygstldddqRHADAAEALSSAAnfransdynsdkeepdpegmasMLGLQSYWDSAYADELANFrehghagevwFGADVMDVVASWTKSLCISIsqghmlnhvedlksepveendkylsswsvldigtgNGLLLQELSKqgfsdltgvdyseDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKsernehytfdlYQIGYymsnecfllk
Flexible Loop (DISEMBL)
magfrlppeepevspqqppqQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSsaanfransdynsDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Low Complexity Region (SEG)
MAGFRLppeepevspqqppqqvrvAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHadaaealssaanfraNSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Disordered region (IsUnstruct)
*******************************************************************************************LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDL*******NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLL*
Disordered Region (DISOPRED)
*******************************DERSVAADSWSIKSEYGSTLDD****************************************LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Disordered Region (DISEMBL)
***********************VAGD***********DSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANS*************MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Disordered Region (DISPRO)
**********************************SVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANF****************G*ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEE*DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q5JPI9	291	Methyltransferase-like pr	yes	no	0.505	0.450	0.393	8e-23
Q9D853	244	Methyltransferase-like pr	yes	no	0.563	0.598	0.31	8e-20
Q5D013	233	Methyltransferase-like pr	yes	no	0.544	0.605	0.292	5e-18
Q9P7Z3	238	N-lysine methyltransferas	yes	no	0.447	0.487	0.35	1e-11
P40516	257	N-lysine methyltransferas	yes	no	0.440	0.443	0.317	7e-09

>sp|Q5JPI9|MET10_HUMAN Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2

 Score =  107 bits (267), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 63/160 (39%), Positives = 88/160 (55%), Gaps = 29/160 (18%)

Query: 77  NSDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSL 135
            SDK  P  +G   S LG + +WD+ Y  EL  FRE+G  GE+WFG + M+ +  W    
Sbjct: 16  RSDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWM--- 72

Query: 136 CISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY 195
                Q H +         P++         SVLDIGTGNG+ L EL+K GFS++TG+DY
Sbjct: 73  -----QKHKI---------PLDA--------SVLDIGTGNGVFLVELAKFGFSNITGIDY 110

Query: 196 SEDAINLAQSLANRDGFSCIKFLV---MNISVQILTYFIC 232
           S  AI L+ S+  ++G S IK  V   +N+S Q+  + IC
Sbjct: 111 SPSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTQLSGFHIC 150

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9D853|MET10_MOUSE Methyltransferase-like protein 10 OS=Mus musculus GN=Mettl10 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 54/200 (27%)

Query: 85  PEG-------MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCI 137
           PEG       + S LG + +WD+ Y  EL  F+E+G  GE+WFG + M+ +  W      
Sbjct: 18  PEGSSAADDFVPSALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWM----- 72

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197
              Q H +         P++         SVLDIGTGNG+ L EL K GFS++TG+DYS 
Sbjct: 73  ---QKHKI---------PLDA--------SVLDIGTGNGVFLVELVKHGFSNITGIDYSP 112

Query: 198 DAINLAQSLANRDGFSCIKFLV---MNISVQILTYFIC---------------KSERNEH 239
            AI L+ S+  ++G S I   V   +N S ++  + +C                 E+ + 
Sbjct: 113 SAIKLSASILEKEGLSNINLKVEDFLNPSTKLSGFHVCVDKGTYDAISLNPDNAIEKRKQ 172

Query: 240 YTFDLYQI----GYYMSNEC 255
           Y   L ++    G+++   C
Sbjct: 173 YVMSLSRVLEVKGFFLITSC 192

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5D013|MET10_DANRE Methyltransferase-like protein 10 OS=Danio rerio GN=mettl10 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 47/188 (25%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD AY  EL  +++ G  GE+WFG + M  V  W                  
Sbjct: 26  SKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW------------------ 67

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209
            ++++ + EN       ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   
Sbjct: 68  -MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVE 120

Query: 210 DGFSCIKFLV---MNISVQILTYFIC---------------KSERNEHYTFDLYQI---- 247
           +G   I   V   +N S ++  + +C               + E  +HY   L  +    
Sbjct: 121 EGLKNINIQVEDFLNPSTELKGFDVCIDKGTFDAISLNPEDREEAKKHYVTSLRAVMRPN 180

Query: 248 GYYMSNEC 255
           G+++   C
Sbjct: 181 GFFIITSC 188

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P7Z3|SEE1_SCHPO N-lysine methyltransferase see1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=see1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 24/140 (17%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +            +H+ 
Sbjct: 7   SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHIS 54

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ------GFSDLTGVDYSEDAINLA 203
               E  E      + + VLD+GTGNG LL  L ++          L GVDYSE AI LA
Sbjct: 55  TSFREVSEA-----APFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLA 109

Query: 204 QSLANRDGFS-CIKFLVMNI 222
           +++A    FS  +KF  ++I
Sbjct: 110 KNIARHRQFSDKVKFQQLDI 129

Lysine methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40516|SEE1_YEAST N-lysine methyltransferase SEE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEE1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 34/148 (22%)

Query: 77  NSDKEEPDPEGMASM----------LGLQSYWDSAYADELANFREHGH-AGEVWFGADVM 125
           N   E   PE +  M          LG + YWD  YA EL NFR +    G+ WF     
Sbjct: 15  NGIMERTQPEKVVQMQGTADLSTSKLGTKKYWDELYALELENFRRNPQDTGDCWFSD--- 71

Query: 126 DVVASWTKSLCISISQGHMLNH-VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSK 184
                       S ++  M++  V+++ +  + EN       SV+D+GTGNG +L EL +
Sbjct: 72  ------------SDAEQKMIDFLVDNIGAYRISENA------SVVDLGTGNGHMLFELHQ 113

Query: 185 QGF-SDLTGVDYSEDAINLAQSLANRDG 211
             F   L G+DYSE+++ LA ++A   G
Sbjct: 114 TEFQGKLVGIDYSEESVKLASNIAEATG 141

Lysine methyltransferase. Dimethylates TEF1/eEF1A at 'Lys-316'. May play a role in intracellular transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
255574272	336	conserved hypothetical protein [Ricinus	0.830	0.639	0.756	6e-89
225453070	340	PREDICTED: methyltransferase-like protei	0.837	0.638	0.725	6e-88
356569031	342	PREDICTED: methyltransferase-like protei	0.849	0.643	0.747	1e-87
356499626	342	PREDICTED: methyltransferase-like protei	0.849	0.643	0.743	2e-87
357508247	340	Methyltransferase-like protein [Medicago	0.833	0.635	0.732	1e-86
147767550	808	hypothetical protein VITISV_013343 [Viti	0.826	0.264	0.711	3e-85
224124078	342	predicted protein [Populus trichocarpa]	0.837	0.634	0.764	4e-84
4760710	337	SLL2-S9-protein [Brassica rapa]	0.830	0.637	0.699	6e-81
78191462	240	SLL2-S9-protein-like [Solanum tuberosum]	0.830	0.895	0.693	3e-80
1518113	337	SLL2 [Brassica napus]	0.830	0.637	0.690	2e-79

>gi|255574272|ref|XP_002528050.1| conserved hypothetical protein [Ricinus communis] gi|223532511|gb|EEF34300.1| conserved hypothetical protein [Ricinus communis]

 Score =  333 bits (853), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 168/222 (75%), Positives = 185/222 (83%), Gaps = 7/222 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PEE ++S QQ        GDLVSDDERSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEEADLSQQQSRGGA-AGGDLVSDDERSVAADSWSIKSDYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALSSA NFR  SDYNSDKEEPD EG+ SMLGLQSYWDSAYADELANF EHGHAGE+WF
Sbjct: 60  AEALSSATNFRTASDYNSDKEEPDGEGVTSMLGLQSYWDSAYADELANFHEHGHAGEIWF 119

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G+DVMDVV SWTKSLCI ISQ H+ NHV+      +E++DK L  WSVLD+GTGNGLLLQ
Sbjct: 120 GSDVMDVVVSWTKSLCIRISQDHISNHVD------IEQDDKCLPYWSVLDLGTGNGLLLQ 173

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           EL+KQGFSDLTG DYSE AI+LA+ LA+RDGFS I FLV +I
Sbjct: 174 ELAKQGFSDLTGADYSEGAIDLARKLADRDGFSNINFLVDDI 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453070|ref|XP_002269621.1| PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera] gi|296087211|emb|CBI33585.3| unnamed protein product [Vitis vinifera]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 161/222 (72%), Positives = 189/222 (85%), Gaps = 5/222 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RLPPE+ ++   + P       DLVSDD+RSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLPPEDSDIPQARAP----TYADLVSDDDRSVAADSWSIKSDYGSTLDDDQRHADA 56

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           ++AL+S  NFRA SDY+SDK+E D E + SMLGLQSYWD+AYADEL NFREHGH GEVWF
Sbjct: 57  SDALASG-NFRAASDYSSDKDELDSEVVTSMLGLQSYWDAAYADELTNFREHGHTGEVWF 115

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G +VM++V SWTK+LCI ISQGHM NH++D KSEPVE+ +KYLSSWSVLDIGTGNGLLLQ
Sbjct: 116 GVEVMEIVVSWTKNLCIEISQGHMPNHLDDAKSEPVEQGEKYLSSWSVLDIGTGNGLLLQ 175

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           EL+KQGFSDLTG DYSE AI+LA+SLA+RDGF+ I FLV ++
Sbjct: 176 ELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTYINFLVDDV 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569031|ref|XP_003552710.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 166/222 (74%), Positives = 187/222 (84%), Gaps = 2/222 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEDSDVS-QQSRAVPLSAADLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWD+AYADEL NFREHGHAGEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDAAYADELTNFREHGHAGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQG + N V+++K+E  E  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKTLCVEISQGRIPNDVDEVKTEVDELGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           EL+KQGFSDLTG DYSE AINLAQSLANRDGFS +KFLV ++
Sbjct: 179 ELAKQGFSDLTGTDYSERAINLAQSLANRDGFSNVKFLVDDV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499626|ref|XP_003518638.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  328 bits (840), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 165/222 (74%), Positives = 187/222 (84%), Gaps = 2/222 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLQPEDSDVS-QQSRAVALSATDLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWDSAYADEL NFREHGH GEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDSAYADELTNFREHGHTGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQGH+ N V+++K+E  +  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKALCVEISQGHIPNGVDEVKAEADKLGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           EL+KQGFSDLTG DYSE AI+LAQSLANRDGFS +KFLV ++
Sbjct: 179 ELAKQGFSDLTGTDYSERAISLAQSLANRDGFSNVKFLVDDV 220

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508247|ref|XP_003624412.1| Methyltransferase-like protein [Medicago truncatula] gi|355499427|gb|AES80630.1| Methyltransferase-like protein [Medicago truncatula]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 164/224 (73%), Positives = 187/224 (83%), Gaps = 8/224 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG--DLVSDDERSVAADSWSIKSEYGSTLDDDQRHA 58
           MAG RL PE+ +VS     QQ R     DLVSDD+RS+AADSWSIKSEYGSTLDDDQRHA
Sbjct: 1   MAGIRLQPEDSDVS-----QQARAVALVDLVSDDDRSIAADSWSIKSEYGSTLDDDQRHA 55

Query: 59  DAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEV 118
           DAAEALS+  N RA SDY+SDK+EPD E ++SMLG QSYWD+AY DEL NF EHGHAGEV
Sbjct: 56  DAAEALSNV-NLRAASDYSSDKDEPDAEAVSSMLGFQSYWDAAYTDELTNFHEHGHAGEV 114

Query: 119 WFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL 178
           WFG +VM+VVASWTK+LCI ISQG + NHV+D+K++  E +DK LSSW+VLDIGTGNGLL
Sbjct: 115 WFGDNVMEVVASWTKTLCIDISQGRLPNHVDDVKADAGELDDKLLSSWNVLDIGTGNGLL 174

Query: 179 LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           LQEL+KQGFSDLTG DYSE AINLAQSLANRDGF  IKFLV ++
Sbjct: 175 LQELAKQGFSDLTGTDYSERAINLAQSLANRDGFPNIKFLVDDV 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767550|emb|CAN75639.1| hypothetical protein VITISV_013343 [Vitis vinifera]

 Score =  320 bits (820), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 160/225 (71%), Positives = 186/225 (82%), Gaps = 11/225 (4%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RLPPE+ ++   + P       DLVSDD+RSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLPPEDSDIPQARAP----TXADLVSDDDRSVAADSWSIKSDYGSTLDDDQRHADA 56

Query: 61  AEALSSAANFRANSDYN------SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGH 114
           ++AL+S  NFRA SDY+      SDK+E D E + SMLGLQSYWD+AYADEL NFREHGH
Sbjct: 57  SDALASG-NFRAASDYSTYCVSSSDKDELDSEVVTSMLGLQSYWDAAYADELTNFREHGH 115

Query: 115 AGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTG 174
            GEVWFG +VM++V SWTK LCI ISQGHM NH++D KSEPVE+ +KYLSSWSVLDIGTG
Sbjct: 116 TGEVWFGVEVMEIVVSWTKXLCIEISQGHMPNHLDDAKSEPVEQGEKYLSSWSVLDIGTG 175

Query: 175 NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV 219
           NGLLLQEL+KQGFSDLTG DYSE AI+LA+SLA+RDGF+ I FL+
Sbjct: 176 NGLLLQELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTXINFLL 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124078|ref|XP_002330099.1| predicted protein [Populus trichocarpa] gi|222871233|gb|EEF08364.1| predicted protein [Populus trichocarpa]

 Score =  317 bits (811), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 172/225 (76%), Positives = 189/225 (84%), Gaps = 8/225 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG---DLVSDDERSVAADSWSIKSEYGSTLDDDQRH 57
           M G RL  EE          Q+R AG   DLVSDD+RSVAADSWSIKS+YGSTLDDDQRH
Sbjct: 1   MTGIRLQQEES-----ADLTQIRAAGTGGDLVSDDDRSVAADSWSIKSDYGSTLDDDQRH 55

Query: 58  ADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE 117
           ADAAEALS+AAN RA SDY+SDKEE D EG+ASMLGLQSYWD+AYADELANF EHGHAGE
Sbjct: 56  ADAAEALSAAANCRAASDYSSDKEELDAEGVASMLGLQSYWDAAYADELANFHEHGHAGE 115

Query: 118 VWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGL 177
           VWFGADVMDV+ASWTK LC  ISQG + NHV+D+KSE VEE+DKYLSSWSVLDIGTGNGL
Sbjct: 116 VWFGADVMDVIASWTKGLCFEISQGCIPNHVDDIKSETVEESDKYLSSWSVLDIGTGNGL 175

Query: 178 LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           LL EL+KQGFSDLTGVDYSE AINLA+ LA+RDGFS I  LV ++
Sbjct: 176 LLHELAKQGFSDLTGVDYSEGAINLARRLADRDGFSNINLLVDDV 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4760710|dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]

 Score =  306 bits (784), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 156/223 (69%), Positives = 179/223 (80%), Gaps = 8/223 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ   Q R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---QARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD EG  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDAEGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ      V D   E  ++ DKYLSSW+VLD+GTGNGLLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKE--TSVSD-NGEVNDQADKYLSSWNVLDLGTGNGLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+V +I
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDI 216

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78191462|gb|ABB29952.1| SLL2-S9-protein-like [Solanum tuberosum]

 Score =  304 bits (778), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 178/222 (80%), Gaps = 7/222 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           M G RL PE+ +V+P +       A DL+SDD+RSVAADSWSIKSEYGSTLDD+QRHADA
Sbjct: 1   MVGMRLLPEDSDVAPARTL----AATDLISDDDRSVAADSWSIKSEYGSTLDDEQRHADA 56

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
            EAL+ A N RA SDY+SDKEE D EG++SMLG QSYWDSAYADELAN+REHGHAGEVWF
Sbjct: 57  TEALA-AVNNRAASDYSSDKEEQDAEGVSSMLGFQSYWDSAYADELANYREHGHAGEVWF 115

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           GADVM++VASWT+ LC  I Q H+ NHV D +   V E D  L+ WSVLDIGTGNGLLLQ
Sbjct: 116 GADVMEIVASWTRGLCTGICQNHLSNHVGDGEQVGVHEKD--LADWSVLDIGTGNGLLLQ 173

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           E +KQGFSDLTG DYSE AI+LA+ LA+RD F+ IKFLV +I
Sbjct: 174 EFAKQGFSDLTGTDYSEGAIDLARRLADRDSFTNIKFLVDDI 215

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1518113|gb|AAB49423.1| SLL2 [Brassica napus]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 154/223 (69%), Positives = 178/223 (79%), Gaps = 8/223 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ     R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---HARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD +G  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDADGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ  M   V D   E  ++ DKYLSSW+VLD+GTGN LLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKEM--SVSD-NGEVNDQADKYLSSWNVLDLGTGNCLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+V +I
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDI 216

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
TAIR|locus:2033329	358	AR401 [Arabidopsis thaliana (t	0.749	0.541	0.642	2.5e-65
UNIPROTKB|Q5JPI9	291	METTL10 "Methyltransferase-lik	0.254	0.226	0.521	3e-25
MGI|MGI:1919346	244	Mettl10 "methyltransferase lik	0.254	0.270	0.478	4e-20
ZFIN|ZDB-GENE-050306-30	233	mettl10 "methyltransferase lik	0.254	0.283	0.405	2.1e-17
WB|WBGene00017919	236	F29B9.1 [Caenorhabditis elegan	0.169	0.186	0.5	6.6e-13
SGD|S000001326	257	SEE1 "Probable lysine methyltr	0.173	0.175	0.478	6.6e-09
POMBASE|SPBC839.14c	238	SPBC839.14c "methyltransferase	0.455	0.495	0.355	7.5e-08
UNIPROTKB|G4MP08	276	MGG_16442 "Uncharacterized pro	0.193	0.181	0.431	2e-06
TIGR_CMR|ECH_0637	241	ECH_0637 "3-demethylubiquinone	0.243	0.261	0.390	0.00045

TAIR|locus:2033329 AR401 [Arabidopsis thaliana (taxid:3702)]

 Score = 665 (239.2 bits), Expect = 2.5e-65, P = 2.5e-65
 Identities = 126/196 (64%), Positives = 152/196 (77%)

Query:    28 LVSDDERSVAADSWSIKSEYGSTLDDDQRHXXXXXXXXXXXXXXXNSDYNSDKEEPDPEG 87
             L SDD+RS+AADSWSIKSEYGSTLDDDQRH               +SDY+SDKEEPD +G
Sbjct:    33 LASDDDRSIAADSWSIKSEYGSTLDDDQRHADAAEALSSANFRV-SSDYSSDKEEPDADG 91

Query:    88 MA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLN 146
                SMLGLQSYWD+AY+DEL NFREHGHAGEVWFG DVM++V SWTK LC+ ISQ +M  
Sbjct:    92 GGQSMLGLQSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSV 151

Query:   147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206
                D+ +E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDLTG DYS+ A+ LAQ L
Sbjct:   152 SENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHL 211

Query:   207 ANRDGFSCIKFLVMNI 222
             + RDGF  I+F+V +I
Sbjct:   212 SQRDGFPNIRFMVDDI 227

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5JPI9 METTL10 "Methyltransferase-like protein 10" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
 Identities = 36/69 (52%), Positives = 49/69 (71%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNIS 223
             SVLDIGTGNG+ L EL+K GFS++TG+DYS  AI L+ S+  ++G S IK  V   +N+S
Sbjct:    82 SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLS 141

Query:   224 VQILTYFIC 232
              Q+  + IC
Sbjct:   142 TQLSGFHIC 150

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1919346 Mettl10 "methyltransferase like 10" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 4.0e-20, Sum P(2) = 4.0e-20
 Identities = 33/69 (47%), Positives = 46/69 (66%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNIS 223
             SVLDIGTGNG+ L EL K GFS++TG+DYS  AI L+ S+  ++G S I   V   +N S
Sbjct:    82 SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLSNINLKVEDFLNPS 141

Query:   224 VQILTYFIC 232
              ++  + +C
Sbjct:   142 TKLSGFHVC 150

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

ZFIN|ZDB-GENE-050306-30 mettl10 "methyltransferase like 10" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNIS 223
             ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   +G   I   V   +N S
Sbjct:    78 AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEGLKNINIQVEDFLNPS 137

Query:   224 VQILTYFIC 232
              ++  + +C
Sbjct:   138 TELKGFDVC 146

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

WB|WBGene00017919 F29B9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 121 (47.7 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query:    78 SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFG 121
             SD  E   E  +S LG + +WD  Y  EL NF++HG  GEVWFG
Sbjct:     2 SDMSEQSVEIASSQLGTKDFWDQRYELELKNFKQHGDEGEVWFG 45

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

SGD|S000001326 SEE1 "Probable lysine methyltransferase involved in dimethylation of eEF1A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 108 (43.1 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSLANRDG 211
             SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA ++A   G
Sbjct:    96 SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASNIAEATG 141

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0018027 "peptidyl-lysine dimethylation" evidence=IMP

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IMP

GO:0008168 "methyltransferase activity" evidence=IEA

POMBASE|SPBC839.14c SPBC839.14c "methyltransferase involved in endocytosis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 139 (54.0 bits), Expect = 7.5e-08, P = 7.5e-08
 Identities = 49/138 (35%), Positives = 67/138 (48%)

Query:    90 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
             S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +   IS S       V 
Sbjct:     7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLEDH-ISTS----FREVS 61

Query:   150 DLKSEPVEENDKYLSSWSVLDIGTGNGL--LLQELSKQGFS--DLTGVDYSEDAINLAQS 205
             +  + P    D        L  G G+ L  LL+E      S   L GVDYSE AI LA++
Sbjct:    62 E--AAPFRVLD--------LGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKN 111

Query:   206 LANRDGFSC-IKFLVMNI 222
             +A    FS  +KF  ++I
Sbjct:   112 IARHRQFSDKVKFQQLDI 129

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

UNIPROTKB|G4MP08 MGG_16442 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 94 (38.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query:   164 SSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSLANRDGFS 213
             +S S +D+GTGNG +L  L + G++    GVDYS  A+ LAQ +A    +S
Sbjct:    73 NSTSFVDLGTGNGNMLHALRRAGWAGPCLGVDYSPAAVALAQKVAASTTYS 123

GO:0005737 "cytoplasm" evidence=ISS

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|ECH_0637 ECH_0637 "3-demethylubiquinone-9 3-methyltransferase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 109 (43.4 bits), Expect = 0.00045, P = 0.00045
 Identities = 25/64 (39%), Positives = 40/64 (62%)

Query:   165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV 224
             S SVLD+G G GLL + +S+ G   + G+D SE++IN+A+  A+  G   +K+  M+I  
Sbjct:    56 SLSVLDLGCGGGLLSESMSRLGMK-VFGIDASEESINIARVHASERGLCNLKYSCMDIES 114

Query:   225 QILT 228
              + T
Sbjct:   115 LVNT 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.132   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      259       226   0.00078  113 3  11 22  0.43    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  211 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.15u 0.10s 20.25t   Elapsed:  00:00:02
  Total cpu time:  20.15u 0.10s 20.25t   Elapsed:  00:00:02
  Start:  Sat May 11 12:52:26 2013   End:  Sat May 11 12:52:28 2013

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008689 "3-demethylubiquinone-9 3-O-methyltransferase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	7e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-08
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	1e-07
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	2e-07
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-07
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-06
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	5e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	9e-05
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	2e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	7e-04
PRK12335	287	PRK12335, PRK12335, tellurite resistance protein T	0.001
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	0.001
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	0.001
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.004

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 55.9 bits (135), Expect = 7e-10
 Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            VLD+G G G L   L+++    +++ G+D SE+AI  A+  A + G+  ++F+  +I
Sbjct: 6   KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDI 63

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 49.0 bits (117), Expect = 9e-08
 Identities = 18/55 (32%), Positives = 27/55 (49%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           VLD+G G G L   L+    + +TGVD S  A+ LA+  A       ++ L  + 
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDA 56

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 20/55 (36%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           +LD+G G G +L+ L++ G S +TGVD S++A+ LA+      G   ++F+V + 
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-KVRFVVADA 54

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 143 HMLNHVE-DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   + + +N K L    VLD+G G GLL + L++ G  ++TG+D SE+ I 
Sbjct: 23  HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE 81

Query: 202 LAQSLANRDGFSCIKFLV 219
           +A+  A +D    I++  
Sbjct: 82  VAKLHAKKDPLLKIEYRC 99

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 47.3 bits (113), Expect = 3e-07
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            VLDIG G G L  EL++    + +TGVD S + + LA+  A       I F+  + 
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDA 60

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%)

Query: 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           LD+G G GLL + L+++G + +TGVD S + + LA+  A        KF+V + 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP------RKFVVGDA 48

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 143 HMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   E        L    VLD+G G G+L + L++ G S +TG+D SE  I 
Sbjct: 38  HKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIE 95

Query: 202 LAQSLANRDG 211
           +A+  A   G
Sbjct: 96  VAKLHALESG 105

Length = 243

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
           LDIG G G LL+ L +     + TGVD S  A+  A       G      +
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRV 51

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 143 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202
           H +N    L+   + E+   L    VLD+G G G+L + +++ G  D+TG+D SE+ I +
Sbjct: 30  HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85

Query: 203 AQ 204
           A+
Sbjct: 86  AR 87

Length = 233

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAI 200
            VLDIG G G+LL+ L ++GF D+TGVD S  A+
Sbjct: 25  RVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAV 57

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|183450 PRK12335, PRK12335, tellurite resistance protein TehB; Provisional

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 11/75 (14%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227
            LD+G G G     L+  GF D+T VD ++ ++   Q +A ++          N++++  
Sbjct: 124 ALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKE----------NLNIRTG 172

Query: 228 TYFICKSERNEHYTF 242
            Y I  +   E Y F
Sbjct: 173 LYDINSASIQEEYDF 187

Length = 287

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 39.0 bits (92), Expect = 0.001
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 156 VEENDKYLSS--WSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209
           VE   + L      VLD+GTG+G     L +E      + +T VD S +A+ +A+  A R
Sbjct: 77  VEAALERLKKGPLRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAAR 133

Query: 210 DGFSCIKFL 218
            G   ++FL
Sbjct: 134 LGLDNVEFL 142

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 9/69 (13%)

Query: 163 LSSWS-------VLDIGTGNGLLLQELS-KQGFSDLTGVDYSEDAINLAQ-SLANRDGFS 213
           L++++       +LD+G GNG L   L+ +   + + GV+  E+A  +AQ ++A      
Sbjct: 36  LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95

Query: 214 CIKFLVMNI 222
            I+ +  +I
Sbjct: 96  RIQVIEADI 104

Length = 248

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS 213
              VLD G G+G  L   ++ G  + + GV+   +A  LA+      G +
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLA 50

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
KOG1271	227	consensus Methyltransferases [General function pre	99.93
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.62
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.46
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.45
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.39
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.39
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.38
PRK11207	197	tellurite resistance protein TehB; Provisional	99.35
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.33
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.29
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.26
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.25
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.23
PRK05785	226	hypothetical protein; Provisional	99.22
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.21
PRK12335	287	tellurite resistance protein TehB; Provisional	99.18
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.18
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.18
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.17
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.16
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.16
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.14
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.14
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.14
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.13
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.11
PLN02244	340	tocopherol O-methyltransferase	99.11
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.11
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.11
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.11
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.11
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.09
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.08
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.08
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.03
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.03
COG2890	280	HemK Methylase of polypeptide chain release factor	99.03
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.03
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.02
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.02
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.01
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.0
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.0
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.99
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.99
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.98
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.98
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.97
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.96
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.96
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.94
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.93
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.92
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.92
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.92
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.91
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.91
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.91
PRK14967	223	putative methyltransferase; Provisional	98.91
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.9
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.9
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.89
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.89
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.88
COG4123	248	Predicted O-methyltransferase [General function pr	98.88
PLN02336	475	phosphoethanolamine N-methyltransferase	98.88
PRK06202	232	hypothetical protein; Provisional	98.87
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.87
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.86
PRK07402	196	precorrin-6B methylase; Provisional	98.84
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.84
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.81
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.81
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.81
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.8
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.8
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.8
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.8
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.79
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.79
PRK06922	677	hypothetical protein; Provisional	98.79
PRK14968	188	putative methyltransferase; Provisional	98.78
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.78
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.77
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.77
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.77
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.76
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.76
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.76
PLN02490	340	MPBQ/MSBQ methyltransferase	98.76
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.76
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.76
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.76
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.75
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.75
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.73
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.72
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.72
PRK08317	241	hypothetical protein; Provisional	98.72
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.71
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.7
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.7
PRK04148	134	hypothetical protein; Provisional	98.7
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.7
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.69
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.69
PRK04266	226	fibrillarin; Provisional	98.69
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.69
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.68
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.67
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.67
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.66
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.66
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.65
KOG2361	264	consensus Predicted methyltransferase [General fun	98.64
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.64
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.64
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.64
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.63
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.63
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.62
PLN02672	1082	methionine S-methyltransferase	98.62
PHA03411	279	putative methyltransferase; Provisional	98.61
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.61
PLN02336	475	phosphoethanolamine N-methyltransferase	98.61
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.6
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.6
PLN03075	296	nicotianamine synthase; Provisional	98.6
KOG2904	328	consensus Predicted methyltransferase [General fun	98.59
TIGR03438	301	probable methyltransferase. This model represents	98.58
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.57
PHA03412	241	putative methyltransferase; Provisional	98.57
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.54
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.54
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.54
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.53
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.53
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.53
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.51
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.48
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.47
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.47
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.44
PRK04457	262	spermidine synthase; Provisional	98.44
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.43
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.42
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.41
PTZ00146	293	fibrillarin; Provisional	98.4
PRK00811	283	spermidine synthase; Provisional	98.4
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.39
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.39
KOG2730	263	consensus Methylase [General function prediction o	98.37
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.36
KOG4300	252	consensus Predicted methyltransferase [General fun	98.35
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.32
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.32
TIGR00438	188	rrmJ cell division protein FtsJ.	98.31
COG2520	341	Predicted methyltransferase [General function pred	98.31
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.28
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.27
PLN02476	278	O-methyltransferase	98.26
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.26
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.26
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.25
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.23
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.2
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.2
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.18
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.18
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.17
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.16
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.1
PLN02366	308	spermidine synthase	98.09
COG4122	219	Predicted O-methyltransferase [General function pr	98.08
PRK03612	521	spermidine synthase; Provisional	98.07
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.05
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.04
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.01
PRK01581	374	speE spermidine synthase; Validated	98.0
KOG3010	261	consensus Methyltransferase [General function pred	97.99
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.99
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.99
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.93
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.91
PF13679	141	Methyltransf_32: Methyltransferase domain	97.86
COG3897	218	Predicted methyltransferase [General function pred	97.82
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.82
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.79
COG4076	252	Predicted RNA methylase [General function predicti	97.71
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.69
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.68
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.67
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.65
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.65
PLN02823	336	spermine synthase	97.61
KOG2899	288	consensus Predicted methyltransferase [General fun	97.61
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.6
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.58
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.57
KOG2940	325	consensus Predicted methyltransferase [General fun	97.53
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.48
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.47
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.42
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.31
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.27
PRK10742	250	putative methyltransferase; Provisional	97.24
PHA01634	156	hypothetical protein	97.22
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.13
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.11
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.09
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.09
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.93
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.92
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.9
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.9
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	96.89
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	96.82
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	96.81
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.78
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	96.77
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.74
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.7
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.67
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.57
PRK00536	262	speE spermidine synthase; Provisional	96.57
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.48
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	96.38
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.19
PRK11524	284	putative methyltransferase; Provisional	96.17
COG2521	287	Predicted archaeal methyltransferase [General func	96.1
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.04
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.03
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.0
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.88
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.82
PRK13699	227	putative methylase; Provisional	95.76
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.7
KOG3115	249	consensus Methyltransferase-like protein [General	95.43
COG4262	508	Predicted spermidine synthase with an N-terminal m	95.39
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.36
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.35
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.3
KOG1331	293	consensus Predicted methyltransferase [General fun	94.86
KOG1227	351	consensus Putative methyltransferase [General func	94.75
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.61
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.61
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.51
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	94.42
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.38
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.37
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	94.24
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	94.09
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.04
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	93.84
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	93.04
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	92.96
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	92.9
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	92.79
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	92.67
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.64
KOG2078	495	consensus tRNA modification enzyme [RNA processing	92.49
KOG2920	282	consensus Predicted methyltransferase [General fun	92.48
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	92.41
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	91.95
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.94
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	91.56
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	90.95
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	90.79
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.74
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	90.69
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.46
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	90.41
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	89.66
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	89.6
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	89.45
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	89.38
COG0286	489	HsdM Type I restriction-modification system methyl	89.14
KOG2671	421	consensus Putative RNA methylase [Replication, rec	88.99
PRK08339	263	short chain dehydrogenase; Provisional	88.92
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	88.8
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.19
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	88.15
COG1568	354	Predicted methyltransferases [General function pre	88.13
COG1565	370	Uncharacterized conserved protein [Function unknow	87.72
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	87.58
PRK05867	253	short chain dehydrogenase; Provisional	87.42
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	87.27
PRK10458	467	DNA cytosine methylase; Provisional	87.23
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	87.15
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	86.89
PRK07904	253	short chain dehydrogenase; Provisional	86.54
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	86.42
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	86.34
PRK07890	258	short chain dehydrogenase; Provisional	86.13
PRK07035	252	short chain dehydrogenase; Provisional	86.02
PRK06124	256	gluconate 5-dehydrogenase; Provisional	85.99
PRK05876	275	short chain dehydrogenase; Provisional	85.71
PRK06172	253	short chain dehydrogenase; Provisional	85.68
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	85.33
PRK07063	260	short chain dehydrogenase; Provisional	84.9
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	84.72
PRK06125	259	short chain dehydrogenase; Provisional	84.55
PRK07677	252	short chain dehydrogenase; Provisional	84.43
PRK08703	239	short chain dehydrogenase; Provisional	84.22
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	84.17
PRK08213	259	gluconate 5-dehydrogenase; Provisional	84.06
PRK07097	265	gluconate 5-dehydrogenase; Provisional	83.92
PRK07523	255	gluconate 5-dehydrogenase; Provisional	83.79
PRK06194	287	hypothetical protein; Provisional	83.76
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	83.72
PRK08862	227	short chain dehydrogenase; Provisional	83.56
PRK07478	254	short chain dehydrogenase; Provisional	83.14
PRK07102	243	short chain dehydrogenase; Provisional	83.04
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.91
PRK05866	293	short chain dehydrogenase; Provisional	82.82
PRK07109	334	short chain dehydrogenase; Provisional	82.77
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.55
PRK07814	263	short chain dehydrogenase; Provisional	82.35
PRK07454	241	short chain dehydrogenase; Provisional	82.12
KOG3201	201	consensus Uncharacterized conserved protein [Funct	82.1
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	81.84
PRK06139	330	short chain dehydrogenase; Provisional	81.58
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	81.55
PRK07831	262	short chain dehydrogenase; Provisional	81.3
PRK08589	272	short chain dehydrogenase; Validated	81.24
PRK08223	287	hypothetical protein; Validated	81.02
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	80.82
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	80.8
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	80.56
PRK07062	265	short chain dehydrogenase; Provisional	80.48
PRK07326	237	short chain dehydrogenase; Provisional	80.32

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.93  E-value=1.7e-25  Score=184.79  Aligned_cols=142  Identities=48%  Similarity=0.806  Sum_probs=121.8

Q ss_pred             CCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhc
Q 025035           81 EEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEEND  160 (259)
Q Consensus        81 ~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~  160 (259)
                      +++ .++..|+||.++|||+.|+.++.||.++++.|++||+++.+.++..|+..++. +.+                   
T Consensus         5 ~~~-adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r-------------------   63 (227)
T KOG1271|consen    5 SEP-ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR-------------------   63 (227)
T ss_pred             ccc-ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh-------------------
Confidence            344 56899999999999999999999999999999999999999999999998764 111                   


Q ss_pred             cCCCC-CEEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEe
Q 025035          161 KYLSS-WSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       161 ~~~~~-~~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~  234 (259)
                       +.+. .+|||+|||+|.+++.|++.|+. .++|+|+|+.++++|+..+++.++++ |+|.+.|+.+..+   .||+|  
T Consensus        64 -v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlv--  140 (227)
T KOG1271|consen   64 -VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLV--  140 (227)
T ss_pred             -hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEE--
Confidence             1122 39999999999999999999887 49999999999999999999999987 9999999999644   88886  


Q ss_pred             cccCccccceeeee
Q 025035          235 ERNEHYTFDLYQIG  248 (259)
Q Consensus       235 ~v~~h~~~D~i~~~  248 (259)
                        +...++|.|.+.
T Consensus       141 --lDKGT~DAisLs  152 (227)
T KOG1271|consen  141 --LDKGTLDAISLS  152 (227)
T ss_pred             --eecCceeeeecC
Confidence              456777776553

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=2.4e-15  Score=131.35  Aligned_cols=127  Identities=19%  Similarity=0.319  Sum_probs=102.6

Q ss_pred             cchhhhhhhHHHHHhhcCccccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHH
Q 025035           51 LDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVAS  130 (259)
Q Consensus        51 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~  130 (259)
                      ++.++...+++.+|.+     ++..|+.|++-       ..+|.+..|.+.....+..                      
T Consensus         4 ~~~~~k~~~v~~vF~~-----ia~~YD~~n~~-------~S~g~~~~Wr~~~i~~~~~----------------------   49 (238)
T COG2226           4 VAKDEKQEKVQKVFDK-----VAKKYDLMNDL-------MSFGLHRLWRRALISLLGI----------------------   49 (238)
T ss_pred             ccccccHHHHHHHHHh-----hHHHHHhhccc-------ccCcchHHHHHHHHHhhCC----------------------
Confidence            4556667788889988     99999999877       7899999998864321100                      


Q ss_pred             HHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh
Q 025035          131 WTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR  209 (259)
Q Consensus       131 w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~  209 (259)
                                                      .++.+|||+|||||.+++.+++. |..+|+|+|+|+.||+.|++++..
T Consensus        50 --------------------------------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~   97 (238)
T COG2226          50 --------------------------------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK   97 (238)
T ss_pred             --------------------------------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence                                            14789999999999999999998 556999999999999999999998


Q ss_pred             cCCcceEEEEecccCCCc---ceeEEEecccCccccc
Q 025035          210 DGFSCIKFLVMNISVQIL---TYFICKSERNEHYTFD  243 (259)
Q Consensus       210 ~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~D  243 (259)
                      .+..+++|+++|++++|+   +||++......|...|
T Consensus        98 ~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d  134 (238)
T COG2226          98 KGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTD  134 (238)
T ss_pred             cCccceEEEEechhhCCCCCCccCEEEeeehhhcCCC
Confidence            877679999999999988   7886655555444433

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.46  E-value=2.4e-13  Score=118.93  Aligned_cols=80  Identities=23%  Similarity=0.324  Sum_probs=58.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      ++.+|||+|||+|.++..++++ + ..+|+|+|+|+.|++.|+++.+..+..+|+|+++|++++++   +||++.+....
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fgl  126 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGL  126 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-G
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhH
Confidence            4779999999999999999987 3 34999999999999999999998887789999999999877   78977766666


Q ss_pred             ccccc
Q 025035          239 HYTFD  243 (259)
Q Consensus       239 h~~~D  243 (259)
                      |...|
T Consensus       127 rn~~d  131 (233)
T PF01209_consen  127 RNFPD  131 (233)
T ss_dssp             GG-SS
T ss_pred             HhhCC
Confidence            55444

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.45  E-value=2.8e-13  Score=117.84  Aligned_cols=123  Identities=15%  Similarity=0.288  Sum_probs=103.8

Q ss_pred             ccCCCCCC-CcchhhhhhhHHHHHhhcCccccCCCCCCCCCCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceec
Q 025035           42 SIKSEYGS-TLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF  120 (259)
Q Consensus        42 ~~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF  120 (259)
                      ++.+++|. |+.+.++-..+..+|++     ++..|+.|+|.       +.+|.+..|++.+-..+..            
T Consensus        43 ~~~Thfgf~tV~e~eke~~V~~vF~~-----vA~~YD~mND~-------mSlGiHRlWKd~~v~~L~p------------   98 (296)
T KOG1540|consen   43 SKCTHFGFKTVRESEKERLVHHVFES-----VAKKYDIMNDA-------MSLGIHRLWKDMFVSKLGP------------   98 (296)
T ss_pred             cccccccccccchhhhhhHHHHHHHH-----HHHHHHHHHHH-------hhcchhHHHHHHhhhccCC------------
Confidence            55688884 67899999999999999     88889999999       8999999998876433322            


Q ss_pred             CcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhc-CC------CcEEEE
Q 025035          121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGV  193 (259)
Q Consensus       121 ~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g~------~~V~gi  193 (259)
                                                                .++.++||++||+|.+++.+.+. +.      ++|+++
T Consensus        99 ------------------------------------------~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~  136 (296)
T KOG1540|consen   99 ------------------------------------------GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL  136 (296)
T ss_pred             ------------------------------------------CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence                                                      23689999999999999999987 32      589999


Q ss_pred             eCCHHHHHHHHHHhHhcCCc---ceEEEEecccCCCc---cee
Q 025035          194 DYSEDAINLAQSLANRDGFS---CIKFLVMNISVQIL---TYF  230 (259)
Q Consensus       194 D~S~~~i~~a~~~~~~~~l~---~i~~i~~D~~~~~~---~fd  230 (259)
                      |+|++|++.+++++.+.++.   .+.|+++|++++|+   .||
T Consensus       137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            99999999999999776663   38999999999987   455

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.39  E-value=2.5e-12  Score=104.70  Aligned_cols=80  Identities=33%  Similarity=0.361  Sum_probs=67.0

Q ss_pred             CCCEEEEEccCcChhHHHHHh-c-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~-~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~  237 (259)
                      ++.+|||+|||+|.++..+++ . +..+++|+|+|+.||+.|+++++..++.+++|+++|+.+++    ..||++++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            478999999999999999994 3 23489999999999999999999999888999999999976    37998877766


Q ss_pred             Cccccc
Q 025035          238 EHYTFD  243 (259)
Q Consensus       238 ~h~~~D  243 (259)
                      .|...|
T Consensus        83 l~~~~~   88 (152)
T PF13847_consen   83 LHHFPD   88 (152)
T ss_dssp             GGGTSH
T ss_pred             hhhccC
Confidence            554443

...

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.39  E-value=4.7e-13  Score=115.91  Aligned_cols=80  Identities=29%  Similarity=0.378  Sum_probs=69.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---cee-EEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYF-ICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fd-vv~~~v~~  238 (259)
                      .++.+|||+|||.|.++..+|+.|+ +|+|+|+|+.+|+.|+.++...++ ++.+.+..++++..   +|| |++.+|++
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            4689999999999999999999996 999999999999999999998887 57788877777533   888 57788889


Q ss_pred             ccccce
Q 025035          239 HYTFDL  244 (259)
Q Consensus       239 h~~~D~  244 (259)
                      |++..-
T Consensus       136 Hv~dp~  141 (243)
T COG2227         136 HVPDPE  141 (243)
T ss_pred             ccCCHH
Confidence            887643

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.38  E-value=4.9e-12  Score=96.99  Aligned_cols=73  Identities=23%  Similarity=0.326  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecc-cC--CCcceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNI-SV--QILTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~-~~--~~~~fdvv~~~v  236 (259)
                      ++.+|||||||+|.++..++++ +..+|+|+|+|+.+++.|++++...+. .+++++++|+ ..  ....||+++...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            4689999999999999999993 445999999999999999999955554 4799999999 33  333788776655

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.35  E-value=1.9e-12  Score=110.32  Aligned_cols=76  Identities=21%  Similarity=0.270  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|..+..|+++|. +|+|+|+|+.|++.+++++...++.++++++.|+.+.++  .||+|++....|+
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYDFILSTVVLMF  107 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcCEEEEecchhh
Confidence            568999999999999999999976 999999999999999999988888779999999987543  7888777766654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.33  E-value=8.2e-12  Score=105.92  Aligned_cols=75  Identities=32%  Similarity=0.347  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .+++++||+|||.|+.+++|+++|+ .|+++|+|+.+++.+++.++..++ +|+..+.|+.+...  .||+|++.++.+
T Consensus        29 ~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~yD~I~st~v~~  105 (192)
T PF03848_consen   29 LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEYDFIVSTVVFM  105 (192)
T ss_dssp             S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTEEEEEEESSGG
T ss_pred             cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCcCEEEEEEEec
Confidence            4578999999999999999999999 899999999999999999988888 59999999987544  789887755443

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.29  E-value=4.4e-12  Score=109.52  Aligned_cols=73  Identities=18%  Similarity=0.059  Sum_probs=57.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh------------cCCcceEEEEecccCCCc----
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVMNISVQIL----  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~------------~~l~~i~~i~~D~~~~~~----  227 (259)
                      ++.+|||+|||.|..++.|+++|+ +|+|+|+|+.+|+.+.+....            ..-.+|+++++|+.++..    
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            467999999999999999999998 899999999999986443211            011269999999988653    


Q ss_pred             ceeEEEeccc
Q 025035          228 TYFICKSERN  237 (259)
Q Consensus       228 ~fdvv~~~v~  237 (259)
                      .||.++....
T Consensus       113 ~fD~i~D~~~  122 (213)
T TIGR03840       113 PVDAVYDRAA  122 (213)
T ss_pred             CcCEEEechh
Confidence            5787766554

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.26  E-value=3.6e-12  Score=111.47  Aligned_cols=77  Identities=26%  Similarity=0.399  Sum_probs=65.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC--c----ceEEEEecccCCCccee-EEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--S----CIKFLVMNISVQILTYF-ICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l--~----~i~~i~~D~~~~~~~fd-vv~~~v  236 (259)
                      -+++|||+|||+|.++..|++.|+ .|+|||.++.||+.|+++.+....  .    ++++.+.+++.....|| |+++++
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            367899999999999999999986 999999999999999999554432  1    37788899988877899 788899


Q ss_pred             cCccc
Q 025035          237 NEHYT  241 (259)
Q Consensus       237 ~~h~~  241 (259)
                      ++|+.
T Consensus       168 leHV~  172 (282)
T KOG1270|consen  168 LEHVK  172 (282)
T ss_pred             HHHHh
Confidence            99984

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.25  E-value=4.3e-11  Score=109.11  Aligned_cols=79  Identities=23%  Similarity=0.182  Sum_probs=64.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCCCcceeEEE-eccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQILTYFICK-SERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~~~~fdvv~-~~v~  237 (259)
                      ++.+|||||||+|.+++.++++|. +|+|+|+|+.|++.++++++..+     ..++.|.+.|+.+....||+|+ ..++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL  222 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVL  222 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEE
Confidence            467999999999999999999876 89999999999999999987642     2358999999987767889654 4455


Q ss_pred             Cccccc
Q 025035          238 EHYTFD  243 (259)
Q Consensus       238 ~h~~~D  243 (259)
                      .|++.+
T Consensus       223 ~H~p~~  228 (315)
T PLN02585        223 IHYPQD  228 (315)
T ss_pred             EecCHH
Confidence            666543

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.23  E-value=2.4e-11  Score=103.41  Aligned_cols=75  Identities=20%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..++++|. +|+|+|+|+.|++.+++++...++ ++++.+.|+...+  ..||+|++..+.|.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~I~~~~~~~~  106 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYDFIFSTVVFMF  106 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCCEEEEeccccc
Confidence            467999999999999999999986 999999999999999999888777 4888888876533  36887777666554

Part of a tellurite-reducing operon tehA and tehB

>PRK05785 hypothetical protein; Provisional

Probab=99.22  E-value=5.5e-11  Score=103.55  Aligned_cols=72  Identities=18%  Similarity=0.181  Sum_probs=56.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++        ..++++|+.++++   +||+|.+....|.
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence            3679999999999999999988323899999999999999863        2357888888765   7897776665554


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      ..|
T Consensus       123 ~~d  125 (226)
T PRK05785        123 SDN  125 (226)
T ss_pred             cCC
Confidence            333

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.21  E-value=1.3e-10  Score=103.27  Aligned_cols=79  Identities=19%  Similarity=0.222  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHh---cCCcceEEEEecccCCCc---ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~---~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      ++.+|||+|||+|.++..++++ +. .+|+|+|+|+.|++.|+++...   ....+++++++|+.++++   +||+|++.
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~  152 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG  152 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence            4679999999999999999886 32 4899999999999999887542   223479999999998765   69987766


Q ss_pred             ccCcccc
Q 025035          236 RNEHYTF  242 (259)
Q Consensus       236 v~~h~~~  242 (259)
                      ...|...
T Consensus       153 ~~l~~~~  159 (261)
T PLN02233        153 YGLRNVV  159 (261)
T ss_pred             cccccCC
Confidence            6555443

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.18  E-value=8.9e-11  Score=105.61  Aligned_cols=75  Identities=24%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--CcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--ILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|..++.+++.|. +|+|+|+|+.|++.+++++...++ ++++.+.|+...  +..||+|++..+.|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~fD~I~~~~vl~~  196 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEYDFILSTVVLMF  196 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCccEEEEcchhhh
Confidence            456999999999999999999986 999999999999999999988887 899999998764  337898877766554

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.18  E-value=9.2e-11  Score=100.66  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEeccc-C
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERN-E  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~-~  238 (259)
                      .++.+|||||||+|..+..+++. +..+++|+|+|+.|++.|+++.     .++.++++|+.+..  ..||+|++..+ .
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~~~~~~sfD~V~~~~vL~  116 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFDPFKDNFFDLVLTKGVLI  116 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccCCCCCCCEEEEEECChhh
Confidence            45779999999999999999887 4459999999999999998864     25778889988721  27997666554 4


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |..
T Consensus       117 hl~  119 (204)
T TIGR03587       117 HIN  119 (204)
T ss_pred             hCC
Confidence            554

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.18  E-value=8.5e-11  Score=103.50  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~  237 (259)
                      .++.+|||||||+|..+..+++.   +..+|+|+|+|+.|++.|++++...+.. +++++++|+.+.+. .+|++.+...
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            35789999999999999988873   3349999999999999999999877664 69999999988654 5776665554


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       135 l~~  137 (247)
T PRK15451        135 LQF  137 (247)
T ss_pred             HHh
Confidence            443

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.17  E-value=1.2e-10  Score=98.57  Aligned_cols=72  Identities=19%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++.+|||+|||+|..++.+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+.+...  +||+|++.
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~  119 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR  119 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence            4789999999999999999875 445999999999999999999999998779999999988654  68877664

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.16  E-value=8.8e-11  Score=101.80  Aligned_cols=73  Identities=18%  Similarity=0.050  Sum_probs=56.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh------------cCCcceEEEEecccCCC----c
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR------------DGFSCIKFLVMNISVQI----L  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~------------~~l~~i~~i~~D~~~~~----~  227 (259)
                      ++.+|||+|||.|..+..|+++|+ +|+|||+|+.+|+.+.+....            ....+|++.++|+.++.    .
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            467999999999999999999998 899999999999987532111            01136899999999863    2


Q ss_pred             ceeEEEeccc
Q 025035          228 TYFICKSERN  237 (259)
Q Consensus       228 ~fdvv~~~v~  237 (259)
                      .||.++....
T Consensus       116 ~fd~v~D~~~  125 (218)
T PRK13255        116 DVDAVYDRAA  125 (218)
T ss_pred             CeeEEEehHh
Confidence            6777765554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.16  E-value=1.1e-10  Score=98.27  Aligned_cols=73  Identities=15%  Similarity=0.161  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v  236 (259)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+|+.|++.+++++++.++.+++++++|+.+..  ..||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence            47899999999999999988763 3489999999999999999998888878999999998853  3788777665

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.14  E-value=1.4e-10  Score=103.88  Aligned_cols=78  Identities=24%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCccee-EEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQILTYF-ICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~~fd-vv~~~v~~h  239 (259)
                      .++.+|||||||.|.+++.++++ |+ +|+||.+|+...+.+++++...|+.+ +++.++|..+.+..|| |++..+++|
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD~IvSi~~~Eh  139 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFDRIVSIEMFEH  139 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-SEEEEESEGGG
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCCEEEEEechhh
Confidence            57899999999999999999999 76 99999999999999999999999864 9999999999888999 677788888


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      ..
T Consensus       140 vg  141 (273)
T PF02353_consen  140 VG  141 (273)
T ss_dssp             TC
T ss_pred             cC
Confidence            74

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.14  E-value=1.7e-10  Score=99.45  Aligned_cols=78  Identities=31%  Similarity=0.393  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCcceeEEEe-cccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQILTYFICKS-ERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~~fdvv~~-~v~~h~  240 (259)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .++.|.++|+.+.+..||++.+ .++.|+
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~  132 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHY  132 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhC
Confidence            4578999999999999999998865 999999999999999999877665 3699999999987778886554 445555


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      +
T Consensus       133 ~  133 (219)
T TIGR02021       133 P  133 (219)
T ss_pred             C
Confidence            4

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.14  E-value=1.3e-10  Score=88.12  Aligned_cols=66  Identities=24%  Similarity=0.400  Sum_probs=54.8

Q ss_pred             EEEEccCcChhHHHHHhcC---C-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035          168 VLDIGTGNGLLLQELSKQG---F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       168 VLDiGcG~G~~~~~la~~g---~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      |||+|||+|..+..+++..   . .+++|+|+|+.|++.++++....+. +++|+++|+.+++.   .||++++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999873   2 5999999999999999999988776 89999999998654   7887666

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.13  E-value=1.4e-10  Score=103.41  Aligned_cols=79  Identities=22%  Similarity=0.246  Sum_probs=71.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCccee-EEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYF-ICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fd-vv~~~v~~h  239 (259)
                      .+|.+|||||||.|.++++++++ |. +|+|+++|+++.+.+++++...|+. +++++..|..+....|| ||+..+.+|
T Consensus        71 ~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSvgmfEh  149 (283)
T COG2230          71 KPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSVGMFEH  149 (283)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeehhhHHH
Confidence            57899999999999999999998 45 9999999999999999999999987 69999999999888899 677777787


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       150 vg~  152 (283)
T COG2230         150 VGK  152 (283)
T ss_pred             hCc
Confidence            665

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.11  E-value=2.4e-10  Score=98.62  Aligned_cols=78  Identities=24%  Similarity=0.327  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCcceeEEEecc-cCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQILTYFICKSER-NEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~~fdvv~~~v-~~h~  240 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. .+++|.++|+......||+++... +.|+
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~  140 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHY  140 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcC
Confidence            3567999999999999999999876 799999999999999999887766 469999999766656889765544 4454


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      +
T Consensus       141 ~  141 (230)
T PRK07580        141 P  141 (230)
T ss_pred             C
Confidence            4

>PLN02244 tocopherol O-methyltransferase

Probab=99.11  E-value=3.6e-10  Score=104.15  Aligned_cols=78  Identities=23%  Similarity=0.275  Sum_probs=64.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc-
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN-  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~-  237 (259)
                      .++.+|||||||+|.++..++++...+|+|+|+|+.|++.++++++..++. +++|+++|+.+.++   .||+|++... 
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            356899999999999999999873339999999999999999998888774 59999999988654   7897776444 


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       197 ~h~  199 (340)
T PLN02244        197 EHM  199 (340)
T ss_pred             hcc
Confidence            444

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.11  E-value=4.8e-10  Score=97.14  Aligned_cols=78  Identities=15%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.+++.++++....++.+++++++|+.+.++   .||+|.+...
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  123 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG  123 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence            35789999999999999999986 3 24899999999999999999887777789999999987543   6887665544


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       124 l~~  126 (231)
T TIGR02752       124 LRN  126 (231)
T ss_pred             ccc
Confidence            433

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.11  E-value=1.7e-10  Score=105.47  Aligned_cols=79  Identities=28%  Similarity=0.386  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeE-EEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFI-CKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdv-v~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.|. +|+|||+|+.|++.|++++...+. .+++++++|+.++++   .||+ ++.+++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            3567999999999999999998876 899999999999999988765543 369999999887643   6885 455566


Q ss_pred             Ccccc
Q 025035          238 EHYTF  242 (259)
Q Consensus       238 ~h~~~  242 (259)
                      +|...
T Consensus       209 eHv~d  213 (322)
T PLN02396        209 EHVAN  213 (322)
T ss_pred             HhcCC
Confidence            66643

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.11  E-value=1.7e-10  Score=101.92  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=63.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC----cceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI----LTYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~----~~fdvv~~~v~~  238 (259)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...++. +++++++|+.++.    ..||+|++..+.
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            467999999999999999999976 9999999999999999999888764 6999999987642    378876665554


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       123 ~~  124 (255)
T PRK11036        123 EW  124 (255)
T ss_pred             Hh
Confidence            43

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=4.5e-10  Score=94.17  Aligned_cols=71  Identities=25%  Similarity=0.340  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~  234 (259)
                      ..+++|+|+|||||.+++..+-.|..+|+|+|+.+++++.+++|+.+. ..++.|+++|+.+....+|.++.
T Consensus        44 l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-~g~v~f~~~dv~~~~~~~dtvim  114 (198)
T COG2263          44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-LGDVEFVVADVSDFRGKFDTVIM  114 (198)
T ss_pred             cCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-CCceEEEEcchhhcCCccceEEE
Confidence            467899999999999999999999889999999999999999999884 34899999999998888886543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.09  E-value=8e-10  Score=91.96  Aligned_cols=77  Identities=27%  Similarity=0.412  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.+++.+++++.. +|+++|+|+.+++.++++++.+++.+++++..|+.+..  ..||+|.++.-.|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            4779999999999999999998654 79999999999999999999999866999999998844  38998887765443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.08  E-value=3.1e-10  Score=98.72  Aligned_cols=75  Identities=17%  Similarity=0.021  Sum_probs=59.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH------------hcCCcceEEEEecccCCCc----
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVMNISVQIL----  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~------------~~~l~~i~~i~~D~~~~~~----  227 (259)
                      ++.+||+.|||.|..+..|+.+|+ +|+|+|+|+.+|+.+.+...            .....+|+++++|+.+++.    
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            367999999999999999999999 89999999999999866321            1111379999999999752    


Q ss_pred             --ceeEEEecccCc
Q 025035          228 --TYFICKSERNEH  239 (259)
Q Consensus       228 --~fdvv~~~v~~h  239 (259)
                        .||.|+....++
T Consensus       122 ~~~fD~VyDra~~~  135 (226)
T PRK13256        122 LPVFDIWYDRGAYI  135 (226)
T ss_pred             cCCcCeeeeehhHh
Confidence              578766655443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.08  E-value=4.7e-10  Score=82.57  Aligned_cols=70  Identities=26%  Similarity=0.362  Sum_probs=56.5

Q ss_pred             EEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCccc
Q 025035          169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHYT  241 (259)
Q Consensus       169 LDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~  241 (259)
                      ||+|||+|..+..+++++..+|+|+|+|+.+++.++++....   .+.++++|+.++++   +||+|++....|+.
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec
Confidence            899999999999999995559999999999999999987654   35599999999876   89977766665544

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.03  E-value=4e-10  Score=97.72  Aligned_cols=77  Identities=23%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-c-----------CCcceEEEEecccCCCc----
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-D-----------GFSCIKFLVMNISVQIL----  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~-----------~l~~i~~i~~D~~~~~~----  227 (259)
                      ++.+||..|||.|..+..|+++|+ +|+|+|+|+.+|+.+.+.... .           ...+|++.++|+.+++.    
T Consensus        37 ~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g  115 (218)
T PF05724_consen   37 PGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVG  115 (218)
T ss_dssp             TSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHH
T ss_pred             CCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcC
Confidence            467999999999999999999998 999999999999998553321 0           11258999999999654    


Q ss_pred             ceeEEEecccCccc
Q 025035          228 TYFICKSERNEHYT  241 (259)
Q Consensus       228 ~fdvv~~~v~~h~~  241 (259)
                      .||+|+....++.-
T Consensus       116 ~fD~iyDr~~l~Al  129 (218)
T PF05724_consen  116 KFDLIYDRTFLCAL  129 (218)
T ss_dssp             SEEEEEECSSTTTS
T ss_pred             CceEEEEecccccC
Confidence            68998887665443

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00740 methyltransferase, putative

Probab=99.03  E-value=9.7e-10  Score=96.05  Aligned_cols=77  Identities=12%  Similarity=0.114  Sum_probs=61.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc-ceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL-TYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~-~fdvv~~~v~~  238 (259)
                      ++.+|||||||+|..+..++++   +..+|+|+|+|+.|++.|++++...+. .+++++++|+.+.++ .+|++.+....
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l  132 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  132 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence            5679999999999999999885   234899999999999999999876553 369999999998765 56765555554


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       133 ~~  134 (239)
T TIGR00740       133 QF  134 (239)
T ss_pred             hh
Confidence            44

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=9.7e-10  Score=98.74  Aligned_cols=70  Identities=29%  Similarity=0.430  Sum_probs=59.6

Q ss_pred             EEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecc
Q 025035          167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSER  236 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v  236 (259)
                      +|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|++.+|+.++.++++|+... ...||++.++-
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNP  184 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNP  184 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCC
Confidence            799999999999999999854 49999999999999999999999986777888887773 44788765543

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.03  E-value=1.6e-09  Score=96.31  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||||||+|..++.+++. +. .+|+|+|+|+.|++.|+++....++.+++|+++|+.++++   .||+++++.+
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~v  155 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNCV  155 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcCc
Confidence            46889999999999988877765 43 3799999999999999999988888789999999988654   7898877766


Q ss_pred             Cccccc
Q 025035          238 EHYTFD  243 (259)
Q Consensus       238 ~h~~~D  243 (259)
                      .|...|
T Consensus       156 ~~~~~d  161 (272)
T PRK11873        156 INLSPD  161 (272)
T ss_pred             ccCCCC
Confidence            555443

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.02  E-value=1.9e-09  Score=90.14  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-cceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-LTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-~~fdvv~~~v~~h  239 (259)
                      .++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++++.++. +++++++|+.+.. ..||+++++...|
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~fD~Vi~n~p~~   93 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVRGKFDVILFNPPYL   93 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccCCcccEEEECCCCC
Confidence            3467899999999999999999876 899999999999999999988776 7899999987643 3788877766554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.02  E-value=1.1e-09  Score=100.13  Aligned_cols=78  Identities=21%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .++++|||||||+|.++..++..|...|+|+|+|+.++..++...+..+. .+++++.+|+.+++.  .||+|++..+.|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            35789999999999999999999876899999999999776554433321 369999999988764  789777654443


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      +
T Consensus       201 H  201 (322)
T PRK15068        201 H  201 (322)
T ss_pred             c
Confidence            3

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.01  E-value=1.4e-09  Score=93.08  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecc-cCCC-----cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI-SVQI-----LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~-~~~~-----~~fdvv~~~  235 (259)
                      .+.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+ ..++     ..||+++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            4679999999999999999887 3348999999999999999999888877899999999 5432     257766543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.00  E-value=1e-09  Score=96.50  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++..     .+.++++|+..+++   .||+|++....|.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            367899999999999999988865 99999999999999988642     35788999988654   7998888776665


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      ..|
T Consensus       116 ~~d  118 (251)
T PRK10258        116 CGN  118 (251)
T ss_pred             cCC
Confidence            433

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=1.3e-09  Score=97.98  Aligned_cols=76  Identities=21%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--~~fdvv~~~v~~  238 (259)
                      .++.+|||+|||+|.+++..++.|..+|+|+|+.+.+++.|++|+.++++.. ++....+....+  .+||+|..+++-
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA  239 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILA  239 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhhH
Confidence            5789999999999999999999999899999999999999999999998853 333334443322  278887777754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.99  E-value=1.1e-09  Score=96.60  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..++++. ..+|+|+|+|+.|++.|+++       +++++++|+.+++  ..||+|++....|+
T Consensus        29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  101 (255)
T PRK14103         29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQW  101 (255)
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhhh
Confidence            56899999999999999999872 34899999999999999762       5789999988753  37998877777665


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      ..|
T Consensus       102 ~~d  104 (255)
T PRK14103        102 VPE  104 (255)
T ss_pred             CCC
Confidence            544

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.99  E-value=3.5e-09  Score=82.08  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      ++.+|||+|||+|.++..++++ +..+|+++|+|+.+++.++++++..++.+++++.+|+...    ...||+++.
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~   94 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFI   94 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEE
Confidence            4679999999999999999987 3458999999999999999999888877899999887642    225665544

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.98  E-value=2e-09  Score=97.16  Aligned_cols=75  Identities=20%  Similarity=0.199  Sum_probs=58.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCcceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QILTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~~fdvv~~~v~~  238 (259)
                      .++.+|||+|||+|.+++..++.|..+|+|+|+++.+++.|++|+..+++.. .+.+....+ ....||+|..+++.
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~~~~~dlvvANI~~  235 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLVEGKFDLVVANILA  235 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTCCS-EEEEEEES-H
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccccccCCEEEECCCH
Confidence            5678999999999999999999999899999999999999999999999865 222222222 23589988888764

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.98  E-value=2.4e-09  Score=90.20  Aligned_cols=73  Identities=18%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++++ ..+|+++|+|+.+++.+++++++.++.+++++++|+... +..||+++..
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~  104 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIG  104 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEEC
Confidence            357899999999999999999874 348999999999999999999888877799999987532 2357766544

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.97  E-value=1.8e-09  Score=95.13  Aligned_cols=75  Identities=20%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++.     .++.|+.+|+.+...  .||++++....|.
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  105 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQW  105 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChhh
Confidence            4689999999999999999987 3459999999999999998864     368899999876433  7888777777665


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      ..|
T Consensus       106 ~~d  108 (258)
T PRK01683        106 LPD  108 (258)
T ss_pred             CCC
Confidence            544

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.96  E-value=3.4e-09  Score=91.36  Aligned_cols=73  Identities=16%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      .++.+|||||||+|.++..+++...  .+|+++|+++.+++.|+++++..++.+++++++|+.+..   ..||+++..
T Consensus        76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~  153 (215)
T TIGR00080        76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVT  153 (215)
T ss_pred             CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEc
Confidence            4578999999999999999998732  259999999999999999999999878999999987642   267765543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.96  E-value=2.8e-09  Score=91.14  Aligned_cols=75  Identities=11%  Similarity=-0.054  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~  237 (259)
                      ..+.+|||+|||+|.+++.++.++..+|+++|.++.+++.++++++.+++.+++++++|+.+..    ..||+|+.+--
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPP  130 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPP  130 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence            3467999999999999997666666799999999999999999999988878999999987632    25777665443

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.94  E-value=6.1e-09  Score=92.66  Aligned_cols=77  Identities=25%  Similarity=0.269  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe-cccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS-ERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~-~v~~  238 (259)
                      .++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....  .++.|+++|+.+.++   .||+|++ ..+.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--NKIEFEANDILKKDFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--CceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence            457899999999999999998752239999999999999999987542  369999999987543   7998777 4556


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |..
T Consensus       129 h~~  131 (263)
T PTZ00098        129 HLS  131 (263)
T ss_pred             hCC
Confidence            654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.93  E-value=6.2e-09  Score=89.71  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      .++.+|||||||+|..+..+++. +. .+|+++|+++.+++.++++++..++.+++++++|.....   ..||+|+..
T Consensus        75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942         75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEEC
Confidence            46789999999999999998887 32 489999999999999999999888878999999987642   267766543

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.92  E-value=3.2e-09  Score=81.98  Aligned_cols=74  Identities=24%  Similarity=0.330  Sum_probs=61.5

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC-----cceeEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI-----LTYFICKSERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~-----~~fdvv~~~v~~  238 (259)
                      |.+|||+|||+|.++..+++.+..+++|+|+++.+++.++.++...++ .+++++++|+.+..     ..||+|..+.-.
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            358999999999999999999845999999999999999999999887 46999999998853     278877665544

...

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.92  E-value=4.2e-09  Score=92.93  Aligned_cols=70  Identities=23%  Similarity=0.303  Sum_probs=56.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCcceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++++.+++. ++.+..++.     .||+++.+..
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~  188 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL  188 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc
Confidence            468899999999999999988888767999999999999999999988873 355544432     5777665543

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.92  E-value=6.1e-09  Score=93.86  Aligned_cols=76  Identities=20%  Similarity=0.226  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC-CcceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ-ILTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-~~~fdvv~~~v~~  238 (259)
                      .++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|++++..+++.. +.+...+.... ...||++.++.+.
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~  235 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA  235 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH
Confidence            4678999999999999999998887799999999999999999999888753 66676654332 3378887776543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.91  E-value=5.7e-09  Score=97.97  Aligned_cols=73  Identities=21%  Similarity=0.109  Sum_probs=60.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v  236 (259)
                      .++.+|||+|||+|.+++.+++. +..+|+|+|+|+.|++.|+++++.++. +++++++|+.+..    ..||+|.++-
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~~~FDLIVSNP  327 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSEGKWDIIVSNP  327 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccCCCccEEEECC
Confidence            35679999999999999999875 445899999999999999999988876 7999999986532    2578776654

>TIGR00452 methyltransferase, putative

Probab=98.91  E-value=4.8e-09  Score=95.64  Aligned_cols=78  Identities=17%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCCCc--ceeEEEecc-cC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQIL--TYFICKSER-NE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~~~--~fdvv~~~v-~~  238 (259)
                      .++++|||||||+|.++..++..|...|+|+|+|+.|+.+++...+..+ ..++.++.+++.+++.  .||+|++.. +.
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~  199 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY  199 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence            4578999999999999999999887689999999999987654333222 2368888888887654  899776554 44


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       200 H~  201 (314)
T TIGR00452       200 HR  201 (314)
T ss_pred             cc
Confidence            54

Known examples to date are restricted to the proteobacteria.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.91  E-value=3.3e-09  Score=96.72  Aligned_cols=71  Identities=21%  Similarity=0.247  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~  235 (259)
                      ++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|+++++.+++.+++|+++|+.+..    ..||++..+
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~-~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGM-QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            467999999999999999999874 99999999999999999999999877999999997742    246765543

>PRK14967 putative methyltransferase; Provisional

Probab=98.91  E-value=7e-09  Score=89.86  Aligned_cols=72  Identities=24%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v  236 (259)
                      ++.+|||+|||+|.++..+++.+..+|+++|+|+.+++.+++++...++ +++++++|+.+..  ..||+|.++.
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~np  109 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNP  109 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECC
Confidence            4679999999999999999988766999999999999999999988876 6899999987632  3788777654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.90  E-value=4.9e-09  Score=86.98  Aligned_cols=76  Identities=14%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++++ .+|+++|+++.+++.+++++..  ..+++++++|+.+.+.   .+|.++++...|.
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~~   89 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNI   89 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCccc
Confidence            46799999999999999999985 5999999999999999998754  2479999999998654   4788888776665


Q ss_pred             cc
Q 025035          241 TF  242 (259)
Q Consensus       241 ~~  242 (259)
                      ..
T Consensus        90 ~~   91 (169)
T smart00650       90 ST   91 (169)
T ss_pred             HH
Confidence            43

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.90  E-value=4.4e-09  Score=89.35  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=55.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ...+|||||||+|.++..++++ +..+|+|+|+++.+++.|++++...++.+++++++|+.+.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~   78 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANEL   78 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHH
Confidence            3569999999999999999987 3448999999999999999999888888899999999763

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.89  E-value=1.1e-08  Score=87.74  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC---cceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI---LTYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~---~~fdvv~~~v~  237 (259)
                      ++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++. +++++++|+.+..   ..||+++....
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~  151 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTAA  151 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEccC
Confidence            5679999999999999988876 2 348999999999999999999888875 4999999998743   26786555433

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.89  E-value=1.5e-09  Score=92.74  Aligned_cols=76  Identities=17%  Similarity=0.126  Sum_probs=65.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ...+|.|||||+|..+..|+++ +.+.|+|||-|+.||+.|+++.     .+++|..+|+.+...  .+|+++++-++|.
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~dllfaNAvlqW  104 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTDLLFANAVLQW  104 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccchhhhhhhhhh
Confidence            4679999999999999999998 5569999999999999997754     489999999999655  8889888888877


Q ss_pred             ccce
Q 025035          241 TFDL  244 (259)
Q Consensus       241 ~~D~  244 (259)
                      ..|-
T Consensus       105 lpdH  108 (257)
T COG4106         105 LPDH  108 (257)
T ss_pred             cccc
Confidence            6653

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.88  E-value=7.6e-09  Score=93.13  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-Cc-ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-IL-TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~-~fdvv~~~  235 (259)
                      ++.+|||+|||+|.+++.++++. ..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+. +. .||+|+++
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            35689999999999999999873 349999999999999999999988874 599999998653 22 68877765

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.88  E-value=4.8e-09  Score=92.13  Aligned_cols=73  Identities=22%  Similarity=0.327  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-----ceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-----TYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-----~fdvv~~~v  236 (259)
                      ..++|||+|||+|.+++.++++ ...+|+|||+.+.+.+.|+++.+.+++. +|+++++|+.+...     .||+|.++-
T Consensus        44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP  123 (248)
T COG4123          44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP  123 (248)
T ss_pred             cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence            4789999999999999999999 5569999999999999999999988875 59999999998533     366554443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.88  E-value=8.6e-09  Score=98.78  Aligned_cols=77  Identities=21%  Similarity=0.190  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-ccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~~  238 (259)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...+ .+++|+++|+.+.++   .||+|++. ++.
T Consensus       265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~  343 (475)
T PLN02336        265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFDVIYSRDTIL  343 (475)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEEEEEECCccc
Confidence            4577999999999999999998633489999999999999998875433 269999999988653   69977665 444


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       344 h~  345 (475)
T PLN02336        344 HI  345 (475)
T ss_pred             cc
Confidence            44

>PRK06202 hypothetical protein; Provisional

Probab=98.87  E-value=4.6e-09  Score=91.35  Aligned_cols=77  Identities=23%  Similarity=0.286  Sum_probs=55.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---CcceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---ILTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~~~fdvv~~~  235 (259)
                      ++.+|||||||+|.++..|++.    |. .+|+|+|+|+.|++.|+++....   ++++.+.+...+   +..||++.+.
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTSN  136 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEEC
Confidence            4679999999999999888753    32 38999999999999999876543   355555544433   3378977776


Q ss_pred             ccCccccc
Q 025035          236 RNEHYTFD  243 (259)
Q Consensus       236 v~~h~~~D  243 (259)
                      ...|+..|
T Consensus       137 ~~lhh~~d  144 (232)
T PRK06202        137 HFLHHLDD  144 (232)
T ss_pred             CeeecCCh
Confidence            65554444

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.87  E-value=1.5e-08  Score=94.50  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=62.7

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCC---cceEEEEecccCCC--cceeEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVMNISVQI--LTYFICKSERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l---~~i~~i~~D~~~~~--~~fdvv~~~v~~  238 (259)
                      +.+|||+|||+|.+++.+++++ ..+|+++|+|+.|++.++++++.++.   .+++++..|+....  ..||+|+++-..
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf  308 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF  308 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence            4699999999999999999874 45999999999999999999987764   36899999987632  379988887666


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       309 h~  310 (378)
T PRK15001        309 HQ  310 (378)
T ss_pred             cc
Confidence            54

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.86  E-value=8.1e-09  Score=88.99  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=60.0

Q ss_pred             CEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC--cceeEEEecccCc
Q 025035          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI--LTYFICKSERNEH  239 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~--~~fdvv~~~v~~h  239 (259)
                      ++|||||||+|..+..+++.. ..+|+|+|+|+.+++.+++++...|+. ++++++.|+.+.+  ..||+|++..+.|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~   78 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIH   78 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHH
Confidence            379999999999999999873 348999999999999999999887764 5999999986543  3788766544333

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.84  E-value=1.1e-08  Score=86.77  Aligned_cols=62  Identities=18%  Similarity=0.248  Sum_probs=54.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.+++++++|+.+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            35789999999999999999875 335999999999999999999998888789999999865

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.84  E-value=1.2e-08  Score=86.40  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CC----cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QI----LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~----~~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.....++|+|+|+.+++.++++       +++++++|+.+ .+    .+||+|++...
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            45779999999999999999876444899999999999988651       46788888865 21    26887666655


Q ss_pred             Ccccc
Q 025035          238 EHYTF  242 (259)
Q Consensus       238 ~h~~~  242 (259)
                      .|+..
T Consensus        85 l~~~~   89 (194)
T TIGR02081        85 LQATR   89 (194)
T ss_pred             hHcCc
Confidence            44443

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.81  E-value=2.3e-08  Score=87.27  Aligned_cols=73  Identities=29%  Similarity=0.379  Sum_probs=61.8

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEeccc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERN  237 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~  237 (259)
                      +.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...++.+++++++|+.+..  ..||+|.++..
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npP  163 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPP  163 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCC
Confidence            468999999999999999987 33499999999999999999999888877999999997632  37887766543

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.81  E-value=2.8e-08  Score=85.30  Aligned_cols=72  Identities=15%  Similarity=0.020  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      .++.+|||+|||+|..+..+++.. .+|+++|+++.+++.+++++++.++.+++++++|..+..   ..||+|+..
T Consensus        77 ~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~  151 (212)
T PRK00312         77 KPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVT  151 (212)
T ss_pred             CCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEc
Confidence            457899999999999999888875 389999999999999999999888878999999986632   367865544

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.81  E-value=2.3e-08  Score=84.01  Aligned_cols=63  Identities=21%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++.+++|||||+|.+++.++..+ ..+|+++|.++++++..++|+++.|++|+..+.+++.+.
T Consensus        33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~   96 (187)
T COG2242          33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEA   96 (187)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHh
Confidence            568899999999999999999653 449999999999999999999999999999999999884

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.80  E-value=1.5e-08  Score=85.81  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=53.4

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--CcceeEEEecccCcc
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--ILTYFICKSERNEHY  240 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~~fdvv~~~v~~h~  240 (259)
                      .++||+|||+|.++..|+.+ +.+++++|+|+.+|+.|+++....  ++|+|+++|+.+.  ...||+|...-+.|+
T Consensus        45 ~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~--~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL--PHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             ceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC--CCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            58999999999999999999 569999999999999999998643  5899999999884  338995443333333

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.80  E-value=2.1e-08  Score=88.94  Aligned_cols=76  Identities=16%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccCccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNEHYT  241 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~~  241 (259)
                      .++.+|||||||+|.++..+++++. +|+|+|+++.+++.+++++..  ..+++++++|+.+.+. .+|.+.++.-.+..
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~~-~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRAK-KVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLPEFNKVVSNLPYQIS  104 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCchhceEEEEcCCcccC
Confidence            3578999999999999999999954 899999999999999988754  3479999999998654 66777777666554

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.80  E-value=2e-08  Score=90.30  Aligned_cols=70  Identities=26%  Similarity=0.371  Sum_probs=59.9

Q ss_pred             CEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC-c-ceeEEEec
Q 025035          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI-L-TYFICKSE  235 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~-~-~fdvv~~~  235 (259)
                      .+|||+|||+|.+++.++... ..+|+|+|+|+.+++.|+++++.+++.+ ++|+++|+.+.. . .||++.++
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence            689999999999999999873 3489999999999999999999888754 999999987743 2 68877665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.80  E-value=1.7e-08  Score=96.25  Aligned_cols=61  Identities=26%  Similarity=0.372  Sum_probs=55.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.|++.|+++++.+++.+++|+++|+.+
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~  356 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEE  356 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHH
Confidence            356799999999999999999986 4999999999999999999998888789999999875

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.79  E-value=1.9e-08  Score=91.51  Aligned_cols=70  Identities=21%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-Cc-ceeEEEec
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-IL-TYFICKSE  235 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~-~fdvv~~~  235 (259)
                      .+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|+++++.+++. +++++++|+.+. +. .||+|.++
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence            68999999999999999987 3459999999999999999999988875 599999998653 22 68877664

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.79  E-value=1.9e-08  Score=86.63  Aligned_cols=76  Identities=24%  Similarity=0.290  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .+.+|||||||+|.++..+++.+. .+++++|+|+.+++.++++..    .++.++++|+.+.++   .||++++....|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            357899999999999999998853 378999999999999988654    268899999988653   789887777666


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      +..|
T Consensus       110 ~~~~  113 (240)
T TIGR02072       110 WCDD  113 (240)
T ss_pred             hccC
Confidence            5544

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06922 hypothetical protein; Provisional

Probab=98.79  E-value=2e-08  Score=98.54  Aligned_cols=78  Identities=15%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~~v  236 (259)
                      .++.+|||||||+|..+..+++. +..+|+|+|+|+.|++.|+++....+. ++.++++|+.+++     .+||++.+..
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVsn~  495 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVYSS  495 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEEch
Confidence            46789999999999999988876 345999999999999999998765553 6889999988754     2789887776


Q ss_pred             cCccc
Q 025035          237 NEHYT  241 (259)
Q Consensus       237 ~~h~~  241 (259)
                      +.|..
T Consensus       496 vLH~L  500 (677)
T PRK06922        496 ILHEL  500 (677)
T ss_pred             HHHhh
Confidence            66643

>PRK14968 putative methyltransferase; Provisional

Probab=98.78  E-value=3.7e-08  Score=82.11  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCCc--ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++.+|||+|||+|.++..+++++ .+|+|+|+|+.+++.+++++...+..+  +.++++|+.+...  .||++..+
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n   97 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN   97 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence            56799999999999999999985 499999999999999999998877654  8899999877432  57766544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.78  E-value=1.3e-08  Score=92.62  Aligned_cols=74  Identities=23%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC--C-cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ--I-LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~--~-~~fdvv~~~v~  237 (259)
                      ++++.|||+|||+|.++.+.++.|..+|+++|.|. +++.|++.+..+++.+ |+++++.+++.  | ...|+|.++..
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM  136 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM  136 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence            57899999999999999999999999999999999 4599999999999877 89999988874  3 25666666554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.77  E-value=1.8e-08  Score=97.53  Aligned_cols=71  Identities=25%  Similarity=0.280  Sum_probs=59.4

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC--cceeEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI--LTYFICKSE  235 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~--~~fdvv~~~  235 (259)
                      +.+|||+|||+|.+++.++.. +..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+..  ..||++.++
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence            468999999999999999876 4459999999999999999999888874 5999999986532  268877664

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.77  E-value=2.2e-08  Score=90.61  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCCCc-ceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQIL-TYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~  240 (259)
                      .++.+|||||||+|.++..+++.+. +|+++|+++.+++.+++++...+ ..+++++++|+.+... .+|++.++.-.++
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~~-~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~VvaNlPY~I  113 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLAK-KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQI  113 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhCC-cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCEEEecCCccc
Confidence            3578999999999999999999854 89999999999999999987665 3579999999987654 5777777766665


Q ss_pred             ccce
Q 025035          241 TFDL  244 (259)
Q Consensus       241 ~~D~  244 (259)
                      +..+
T Consensus       114 stpi  117 (294)
T PTZ00338        114 SSPL  117 (294)
T ss_pred             CcHH
Confidence            5544

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.77  E-value=2.2e-08  Score=94.12  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-------cceeE
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-------LTYFI  231 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-------~~fdv  231 (259)
                      ...++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.|+++++.+++.  +++++++|+.+..       ..||+
T Consensus       217 ~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             HhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            44568899999999999999877777779999999999999999999999874  6999999998731       25776


Q ss_pred             EEec
Q 025035          232 CKSE  235 (259)
Q Consensus       232 v~~~  235 (259)
                      |+.+
T Consensus       297 VilD  300 (396)
T PRK15128        297 IVMD  300 (396)
T ss_pred             EEEC
Confidence            6544

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.76  E-value=3.4e-08  Score=85.17  Aligned_cols=78  Identities=18%  Similarity=0.255  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      ++.+|||+|||+|.++..+++.+  ..+|+++|+++.+++.+++++...+. .+++++.+|+.+.+.   .||+|.....
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            46799999999999999999885  36999999999999999998876544 358999999987543   6887765554


Q ss_pred             Cccc
Q 025035          238 EHYT  241 (259)
Q Consensus       238 ~h~~  241 (259)
                      .|..
T Consensus       131 l~~~  134 (239)
T PRK00216        131 LRNV  134 (239)
T ss_pred             cccC
Confidence            4443

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.76  E-value=3.4e-08  Score=91.15  Aligned_cols=75  Identities=23%  Similarity=0.224  Sum_probs=62.8

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCcc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHY  240 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~  240 (259)
                      ..+|||+|||+|.++..+++++ ..+|+++|+|+.|++.++++++.+++ ..+++..|+... ...||+|.++...|.
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~~~~~~D~~~~~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EGEVFASNVFSDIKGRFDMIISNPPFHD  273 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCEEEEcccccccCCCccEEEECCCccC
Confidence            4589999999999999999884 34899999999999999999998886 567788887653 347998888777775

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.76  E-value=2.4e-08  Score=80.68  Aligned_cols=70  Identities=29%  Similarity=0.354  Sum_probs=50.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe---cccCCCcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM---NISVQILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~---D~~~~~~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||.|.++..+++.|. +|+|+|+|+.+++.       .   ++.+...   +.......||+|.+..+.|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~fD~i~~~~~l~   89 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK-------R---NVVFDNFDAQDPPFPDGSFDLIICNDVLE   89 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH-------T---TSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh-------h---hhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence            5688999999999999999999888 99999999999988       1   3333333   2223344899655555544


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      +..|
T Consensus        90 ~~~d   93 (161)
T PF13489_consen   90 HLPD   93 (161)
T ss_dssp             GSSH
T ss_pred             hccc
Confidence            4434

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.76  E-value=2.7e-08  Score=91.59  Aligned_cols=74  Identities=18%  Similarity=0.137  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      ++.+|||||||+|.++..+++. +..+|+++|+|+.|++.|+++...   .+++++.+|+.+.++   .||++++....|
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---KECKIIEGDAEDLPFPTDYADRYVSAGSIE  189 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---cCCeEEeccHHhCCCCCCceeEEEEcChhh
Confidence            4679999999999999988876 345899999999999999987642   368899999988654   689766655444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       190 ~  190 (340)
T PLN02490        190 Y  190 (340)
T ss_pred             h
Confidence            3

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.76  E-value=9.1e-10  Score=82.88  Aligned_cols=74  Identities=24%  Similarity=0.234  Sum_probs=46.0

Q ss_pred             EEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEE---ecccCCCc--ceeEEEecccCcccc
Q 025035          169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---MNISVQIL--TYFICKSERNEHYTF  242 (259)
Q Consensus       169 LDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~---~D~~~~~~--~fdvv~~~v~~h~~~  242 (259)
                      ||||||+|.++..+.+. +..+++|+|+|+.|++.++++....+..+...+.   .+..+...  .||+|....+.|+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999988 3449999999999999999988776643444444   34333322  888666555555543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.76  E-value=1.8e-08  Score=101.14  Aligned_cols=76  Identities=13%  Similarity=0.064  Sum_probs=64.1

Q ss_pred             ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC----CcceeEEE
Q 025035          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      ....++++|||+|||+|.+++.+++.|..+|+++|+|+.+++.|++|++.+++.  +++++++|+.+.    ...||+|+
T Consensus       534 ~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIi  613 (702)
T PRK11783        534 GQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIF  613 (702)
T ss_pred             HHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEE
Confidence            334568899999999999999999988778999999999999999999999885  699999998763    23677665


Q ss_pred             ec
Q 025035          234 SE  235 (259)
Q Consensus       234 ~~  235 (259)
                      .+
T Consensus       614 lD  615 (702)
T PRK11783        614 ID  615 (702)
T ss_pred             EC
Confidence            43

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.76  E-value=2.8e-08  Score=84.31  Aligned_cols=74  Identities=12%  Similarity=-0.043  Sum_probs=61.6

Q ss_pred             cccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       151 ~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      +++.+...+.....+.+|||++||+|.+++.++.+|..+|+++|.++.+++.++++++..++. +++++++|+.+
T Consensus        36 vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        36 VRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            333333433333568899999999999999999999889999999999999999999998875 58999999955

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.75  E-value=1.7e-08  Score=94.47  Aligned_cols=75  Identities=24%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe-cccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS-ERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~-~v~~h~  240 (259)
                      .++.+|||||||+|.++..++++...+|+|+|+|+.+++.|++++.  ++ ++++...|+.+....||.|.+ .+++|.
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l~~~fD~Ivs~~~~ehv  241 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDLNGQFDRIVSVGMFEHV  241 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhcCCCCCEEEEeCchhhC
Confidence            4678999999999999999998732399999999999999999874  33 588899998877668886654 445554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.75  E-value=3.9e-08  Score=83.67  Aligned_cols=72  Identities=26%  Similarity=0.245  Sum_probs=58.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC----cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI----LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~----~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.++++++..++ .+++++++|+.+..    ..||.++.
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            46789999999999999998875 3 34899999999999999999998884 57999999987631    24555443

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.73  E-value=3e-08  Score=88.70  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=60.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-c--eeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-T--YFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~--fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++++. +|+|+|+++.|++.++++...   .+++++++|+.+.+. .  ++.+.++.-.+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~  116 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPYN  116 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCcc
Confidence            3567999999999999999999976 999999999999999987642   479999999998765 2  35555555444


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      .+
T Consensus       117 is  118 (272)
T PRK00274        117 IT  118 (272)
T ss_pred             ch
Confidence            43

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.72  E-value=7.5e-08  Score=83.51  Aligned_cols=71  Identities=27%  Similarity=0.403  Sum_probs=58.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v  236 (259)
                      ++.+|||||||+|.++..+++.+. +|+++|+++.+++.++++....+. ++.++..++.+.+    ..||+++...
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~  122 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCME  122 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhh
Confidence            578999999999999999998865 899999999999999998877665 6888888877643    3788665443

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.72  E-value=4.2e-08  Score=89.97  Aligned_cols=72  Identities=18%  Similarity=0.058  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.++..+. +|+|+|+++.|++.++++++..|+.++.++++|+.+++.   .||++..+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~d  255 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATD  255 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEEC
Confidence            4678999999999999999887765 999999999999999999999988778999999998754   67766554

This family is found exclusively in the Archaea.

>PRK08317 hypothetical protein; Provisional

Probab=98.72  E-value=8.4e-08  Score=82.41  Aligned_cols=77  Identities=25%  Similarity=0.296  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++..  ..+|+|+|+|+.+++.++++....+ .+++++++|+.+.++   .||+|+...+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~   96 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG-PNVEFVRGDADGLPFPDGSFDAVRSDRV   96 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC-CceEEEecccccCCCCCCCceEEEEech
Confidence            357899999999999999999872  3589999999999999998733222 479999999887543   7887666554


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus        97 ~~~   99 (241)
T PRK08317         97 LQH   99 (241)
T ss_pred             hhc
Confidence            443

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.71  E-value=6.3e-08  Score=85.92  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++......+++++++|+.+..  ..||++.++
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~n  182 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSN  182 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEEC
Confidence            356799999999999999999873 4599999999999999999987333347999999987643  378877654

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.70  E-value=7.1e-08  Score=85.34  Aligned_cols=69  Identities=16%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEecc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKSER  236 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~~v  236 (259)
                      +.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|++.++   ++++++|+.+..     ..||++.++-
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECC
Confidence            458999999999999999876 33489999999999999999998765   478999987632     2578766554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.70  E-value=6.4e-08  Score=88.56  Aligned_cols=73  Identities=21%  Similarity=0.221  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      .++.+|||||||+|.++..+++...  .+|+++|+++.+++.|+++++..++.+++++++|+.+..   ..||+|...
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVT  156 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEEC
Confidence            3568999999999999999998632  369999999999999999999888878999999987643   257765543

>PRK04148 hypothetical protein; Provisional

Probab=98.70  E-value=1.1e-07  Score=76.07  Aligned_cols=81  Identities=20%  Similarity=0.247  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEEecc--
Q 025035          164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICKSER--  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~~~v--  236 (259)
                      ++.+|||||||.|. ++..|++.|. +|+++|+++.+++.++++       .++++++|+.+..+    .+|++.+-.  
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysirpp   87 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSIRPP   87 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEeCCC
Confidence            35789999999996 8999998887 999999999999888774       36899999999765    566655432  


Q ss_pred             ----------cCccccceeeeecccc
Q 025035          237 ----------NEHYTFDLYQIGYYMS  252 (259)
Q Consensus       237 ----------~~h~~~D~i~~~~~~~  252 (259)
                                ....-.|+++..++.+
T Consensus        88 ~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         88 RDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence                      1244556666666655

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=9.5e-08  Score=81.79  Aligned_cols=70  Identities=19%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~  233 (259)
                      .++.+|||||||+|+.+--|++... +|+.+|..+...+.|+++++..|+.|+.++++|...--   .+||.|+
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~  143 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRII  143 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEE
Confidence            4688999999999999999999844 99999999999999999999999988999999998842   2677443

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.69  E-value=5.7e-08  Score=86.66  Aligned_cols=67  Identities=24%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC----CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g----~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      .+.+|||+|||+|.++..+++..    ...|+|+|+|+.|++.|+++.     ++++|+++|+.++++   .||+|++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence            35689999999999999988752    126999999999999998753     368999999998765   68877653

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.69  E-value=6.8e-08  Score=90.13  Aligned_cols=62  Identities=13%  Similarity=0.147  Sum_probs=55.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+..+||||||+|.++..+|++ +...++|+|+++.+++.+.+++...++.|+.++++|+...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l  184 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL  184 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh
Confidence            3568999999999999999998 3349999999999999999999999998999999998753

>PRK04266 fibrillarin; Provisional

Probab=98.69  E-value=8.9e-08  Score=83.49  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+++.|++.+.++++..  .++.++.+|+.+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~  131 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARK  131 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCC
Confidence            46789999999999999999987 3348999999999999888877643  478999999875

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=9.8e-08  Score=85.74  Aligned_cols=80  Identities=24%  Similarity=0.208  Sum_probs=65.5

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCcccc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHYTF  242 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~~~  242 (259)
                      +.+|||+|||.|.+++.+++.. ..+|+.+|+|..+++.++++++.+++.+..+...|+.+. ...||.|.++--.|--.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd~IisNPPfh~G~  238 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFDLIISNPPFHAGK  238 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccccEEEeCCCccCCc
Confidence            4599999999999999999984 459999999999999999999999886655666666664 33799888887777544


Q ss_pred             ce
Q 025035          243 DL  244 (259)
Q Consensus       243 D~  244 (259)
                      ++
T Consensus       239 ~v  240 (300)
T COG2813         239 AV  240 (300)
T ss_pred             ch
Confidence            43

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.68  E-value=4.8e-08  Score=91.19  Aligned_cols=69  Identities=19%  Similarity=0.179  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~  233 (259)
                      ++.+|||+|||+|.+++.++..+ .+|+|+|+++.+++.|+++++.+++.+++|+++|+.+..    ..||+++
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi  305 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVL  305 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEE
Confidence            46799999999999999999876 499999999999999999999999878999999997632    1466543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.67  E-value=1.3e-07  Score=81.51  Aligned_cols=72  Identities=21%  Similarity=0.167  Sum_probs=57.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      .++.+|||||||+|+.+..|+.. |.. +|+++|+.+..++.|++++...++.+++++++|......   +||.|+.
T Consensus        71 ~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apfD~I~v  147 (209)
T PF01135_consen   71 KPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPFDRIIV  147 (209)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCcCEEEE
Confidence            57899999999999999999987 432 699999999999999999999998899999999876321   5664443

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.67  E-value=1.1e-07  Score=85.54  Aligned_cols=76  Identities=20%  Similarity=0.094  Sum_probs=55.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--~~fdvv~~~v~~  238 (259)
                      .++++|||||||+|+++..++.+|.+.|+|||.+...+-+.+...+..|... +.++..-+++++  ..||+|++..++
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVL  192 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVL  192 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeeh
Confidence            5789999999999999999999999899999999987766555444444332 344434444443  389977666654

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.66  E-value=4.1e-08  Score=82.90  Aligned_cols=69  Identities=20%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeE-EEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFI-CKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdv-v~~~v  236 (259)
                      .++.+|||+|||.|.++..|.+....++.|+|+++..+..+.++       .+..+++|+.+.     ..+||. |++..
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt   84 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT   84 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence            46899999999999999999986444899999999998888762       367899999883     227774 44444


Q ss_pred             cC
Q 025035          237 NE  238 (259)
Q Consensus       237 ~~  238 (259)
                      +.
T Consensus        85 LQ   86 (193)
T PF07021_consen   85 LQ   86 (193)
T ss_pred             HH
Confidence            43

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.66  E-value=8.6e-08  Score=82.42  Aligned_cols=74  Identities=27%  Similarity=0.415  Sum_probs=60.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~~  238 (259)
                      ++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...++.++++.+.|+.+.+    ..||+++.....
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            477999999999999999998866 79999999999999999988776646899998887643    368876654433

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.65  E-value=9e-08  Score=83.83  Aligned_cols=81  Identities=15%  Similarity=0.188  Sum_probs=64.6

Q ss_pred             HHhhccCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-------
Q 025035          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-------  225 (259)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-------  225 (259)
                      ..++....++++|||||||+|..++.+++.  +..+|+++|+++.+++.|++++++.|+. +|+++++|+.+.       
T Consensus        60 L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~  139 (234)
T PLN02781         60 LSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN  139 (234)
T ss_pred             HHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence            333444467889999999999988888875  3459999999999999999999999985 599999999763       


Q ss_pred             --CcceeEEEecc
Q 025035          226 --ILTYFICKSER  236 (259)
Q Consensus       226 --~~~fdvv~~~v  236 (259)
                        ...||+++.+.
T Consensus       140 ~~~~~fD~VfiDa  152 (234)
T PLN02781        140 DPKPEFDFAFVDA  152 (234)
T ss_pred             CCCCCCCEEEECC
Confidence              23677766553

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.64  E-value=3.7e-08  Score=85.49  Aligned_cols=98  Identities=21%  Similarity=0.317  Sum_probs=71.7

Q ss_pred             chhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEcc
Q 025035           94 LQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGT  173 (259)
Q Consensus        94 ~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGc  173 (259)
                      .+.|||.+|.....+|.                +-.+|+.+.++.+..                ...  ....+||+|||
T Consensus        35 ~~k~wD~fy~~~~~rFf----------------kdR~wL~~Efpel~~----------------~~~--~~~~~ilEvGC   80 (264)
T KOG2361|consen   35 ASKYWDTFYKIHENRFF----------------KDRNWLLREFPELLP----------------VDE--KSAETILEVGC   80 (264)
T ss_pred             hhhhhhhhhhhcccccc----------------chhHHHHHhhHHhhC----------------ccc--cChhhheeecc
Confidence            47899999987777665                345888876655421                000  11238999999


Q ss_pred             CcChhHHHHHhcCC---CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          174 GNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       174 G~G~~~~~la~~g~---~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      |.|....++.+-..   -.|+++|+|+.+|+..+++..... .++..-+.|+....
T Consensus        81 GvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~  135 (264)
T KOG2361|consen   81 GVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPS  135 (264)
T ss_pred             CCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchh
Confidence            99999999998732   289999999999999999876554 35666777777643

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.64  E-value=8e-08  Score=84.89  Aligned_cols=77  Identities=18%  Similarity=0.195  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-cee---EEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYF---ICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fd---vv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++++. +|+++|+++.+++.++++...  ..+++++++|+.+.+. .++   +++++.-.
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~~d~~~~vvsNlPy  104 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPDFPKQLKVVSNLPY  104 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhHcCCcceEEEcCCh
Confidence            3567999999999999999999975 799999999999999987643  2479999999998766 455   67777666


Q ss_pred             cccc
Q 025035          239 HYTF  242 (259)
Q Consensus       239 h~~~  242 (259)
                      |...
T Consensus       105 ~i~~  108 (253)
T TIGR00755       105 NISS  108 (253)
T ss_pred             hhHH
Confidence            5543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.64  E-value=1.4e-07  Score=85.46  Aligned_cols=76  Identities=18%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~~h  239 (259)
                      .+..+|||||||+|.+++.++++. ..+++++|. +.+++.+++++...++. +++++.+|+.+.+. .+|+++...+.|
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh  226 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY  226 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhh
Confidence            456899999999999999999983 348999998 78999999999888875 59999999986332 467554434444

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.64  E-value=2.5e-07  Score=85.02  Aligned_cols=80  Identities=23%  Similarity=0.340  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-------CC---cceEEEEecccCC-------C
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVMNISVQ-------I  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-------~l---~~i~~i~~D~~~~-------~  226 (259)
                      ++.+|||||||.|..+..+...+...++|+|+|...|+.|+++.+..       ..   -...|+++|....       +
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            57899999999999999999888889999999999999999998321       11   1467888888752       1


Q ss_pred             --cceeEEEecccCccccc
Q 025035          227 --LTYFICKSERNEHYTFD  243 (259)
Q Consensus       227 --~~fdvv~~~v~~h~~~D  243 (259)
                        ..||+|.+....|+.+.
T Consensus       142 ~~~~FDvVScQFalHY~Fe  160 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFE  160 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGS
T ss_pred             cCCCcceeehHHHHHHhcC
Confidence              28999999999998874

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.63  E-value=1.8e-07  Score=79.87  Aligned_cols=78  Identities=23%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      ++.+|||+|||+|..+..+++...  .+++++|+++.+++.++++..  ...+++++.+|+.+.++   .||++......
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            578999999999999999998854  389999999999999998875  22368999999988643   68877665554


Q ss_pred             ccccc
Q 025035          239 HYTFD  243 (259)
Q Consensus       239 h~~~D  243 (259)
                      |...+
T Consensus       117 ~~~~~  121 (223)
T TIGR01934       117 RNVTD  121 (223)
T ss_pred             CCccc
Confidence            44333

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.63  E-value=1.4e-07  Score=89.92  Aligned_cols=72  Identities=15%  Similarity=0.032  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.+++++++.|+.+++++++|+.+...  .||+|+.
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            46789999999999999888875  234899999999999999999999998789999999987532  5776653

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.62  E-value=8.6e-08  Score=90.97  Aligned_cols=60  Identities=23%  Similarity=0.359  Sum_probs=55.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|+++++.+++.+++|+++|+.+
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~  351 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLET  351 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHH
Confidence            45799999999999999999875 4899999999999999999999998889999999875

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02672 methionine S-methyltransferase

Probab=98.62  E-value=1.1e-07  Score=98.51  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCC----------------cceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l----------------~~i~~i~~D~~~~~  226 (259)
                      ++.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|++.+++                .+++|+++|+.+..
T Consensus       118 ~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        118 RDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            35689999999999999999873 35899999999999999999987643                25999999998743


Q ss_pred             c----ceeEEEecc
Q 025035          227 L----TYFICKSER  236 (259)
Q Consensus       227 ~----~fdvv~~~v  236 (259)
                      .    .||+|.++-
T Consensus       198 ~~~~~~fDlIVSNP  211 (1082)
T PLN02672        198 RDNNIELDRIVGCI  211 (1082)
T ss_pred             cccCCceEEEEECC
Confidence            2    488766654

>PHA03411 putative methyltransferase; Provisional

Probab=98.61  E-value=1.3e-07  Score=84.36  Aligned_cols=70  Identities=13%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      ..+|||+|||+|.+++.++++. ..+|+|+|+|+.|++.++++.     .+++++++|+.+...  .||+|+++--.+
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~  137 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFG  137 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCcc
Confidence            5699999999999999888762 359999999999999998863     368899999988543  688776655443

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.61  E-value=1.8e-07  Score=89.22  Aligned_cols=73  Identities=15%  Similarity=0.137  Sum_probs=62.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~  235 (259)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++++.|+.+++++++|+.+..    ..||+|+.+
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D  327 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD  327 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence            46789999999999999999986  24589999999999999999999999878999999998753    257766554

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.61  E-value=1.3e-07  Score=90.72  Aligned_cols=75  Identities=23%  Similarity=0.319  Sum_probs=58.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CC---cceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QI---LTYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~---~~fdvv~~~v~~  238 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++...  ...+++++++|+.+  .+   ..||+|++....
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~-~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAG-QVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCC-EEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            467999999999999999999854 99999999999998766332  23479999999864  22   278877776655


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |+.
T Consensus       114 ~~l  116 (475)
T PLN02336        114 MYL  116 (475)
T ss_pred             HhC
Confidence            543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.60  E-value=1.4e-07  Score=85.10  Aligned_cols=98  Identities=24%  Similarity=0.343  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHH
Q 025035          125 MDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ  204 (259)
Q Consensus       125 ~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~  204 (259)
                      +.++..|++..+...+.                     .++..+|++|||.|..++..-+.|...++|+||++..|+.|+
T Consensus        99 lRnfNNwIKs~LI~~y~---------------------~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~  157 (389)
T KOG1975|consen   99 LRNFNNWIKSVLINLYT---------------------KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQAR  157 (389)
T ss_pred             hhhhhHHHHHHHHHHHh---------------------ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHH
Confidence            67888999875422211                     246789999999999999999999889999999999999999


Q ss_pred             HHhHhcC------CcceEEEEecccCC--------Cc-ceeEEEecccCccccc
Q 025035          205 SLANRDG------FSCIKFLVMNISVQ--------IL-TYFICKSERNEHYTFD  243 (259)
Q Consensus       205 ~~~~~~~------l~~i~~i~~D~~~~--------~~-~fdvv~~~v~~h~~~D  243 (259)
                      ++.+...      +-.+.|+++|....        +. .||+|.+....|+.|.
T Consensus       158 ~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFe  211 (389)
T KOG1975|consen  158 KRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFE  211 (389)
T ss_pred             HHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeec
Confidence            9875432      11478999998762        22 4999999999999874

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.60  E-value=1.5e-07  Score=83.86  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      .++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++++++.++.++++++.|....+.   .||.|+.
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            46789999999999999999886 2 24899999999999999999999998789999999876432   4676553

>PLN03075 nicotianamine synthase; Provisional

Probab=98.60  E-value=2.2e-07  Score=83.87  Aligned_cols=74  Identities=18%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCcChh-HHHHHh-c-CCCcEEEEeCCHHHHHHHHHHhHh-cCCc-ceEEEEecccCCC---cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLL-LQELSK-Q-GFSDLTGVDYSEDAINLAQSLANR-DGFS-CIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~-~~~la~-~-g~~~V~giD~S~~~i~~a~~~~~~-~~l~-~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      ++.+|+|||||.|-+ ++.+++ . +..+++|+|+++.+++.|++.++. .++. +++|.++|+.+..   ..||+|+..
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            678999999997744 443443 3 344899999999999999999964 6775 4999999998753   389988877


Q ss_pred             cc
Q 025035          236 RN  237 (259)
Q Consensus       236 v~  237 (259)
                      .+
T Consensus       203 AL  204 (296)
T PLN03075        203 AL  204 (296)
T ss_pred             cc
Confidence            43

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=2.2e-07  Score=82.13  Aligned_cols=57  Identities=32%  Similarity=0.383  Sum_probs=49.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVM  220 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~  220 (259)
                      ++..|||+|||+|.+++.++.. +...|+++|.|+.+|.+|.+|++++++.+ +..++-
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~  206 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHN  206 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEec
Confidence            4568999999999999999987 65699999999999999999999998754 666643

>TIGR03438 probable methyltransferase

Probab=98.58  E-value=1.5e-07  Score=85.30  Aligned_cols=61  Identities=13%  Similarity=0.138  Sum_probs=50.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~  224 (259)
                      ++.+|||+|||+|..+..|++..  ..+|+++|+|+.|++.+++++.... ..++.++++|+.+
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            46799999999999999999883  2489999999999999999876532 1258889999987

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.57  E-value=2.4e-07  Score=88.11  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=62.2

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEe
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKS  234 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~  234 (259)
                      ...++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++++.|+.+++++++|+..++    ..||.|+.
T Consensus       234 ~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        234 ELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence            3356789999999999999998886  23489999999999999999999999877999999988754    25776553

>PHA03412 putative methyltransferase; Provisional

Probab=98.57  E-value=1.4e-07  Score=82.42  Aligned_cols=70  Identities=14%  Similarity=0.125  Sum_probs=56.8

Q ss_pred             CCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~  238 (259)
                      +.+|||+|||+|.++..++++    +..+|+++|+++.+++.|+++.     .++.++++|+....+  .||+|.++--.
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPPY  124 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPPF  124 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCCC
Confidence            679999999999999999875    2348999999999999999764     258899999976433  68887776554


Q ss_pred             c
Q 025035          239 H  239 (259)
Q Consensus       239 h  239 (259)
                      +
T Consensus       125 ~  125 (241)
T PHA03412        125 G  125 (241)
T ss_pred             C
Confidence            4

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.54  E-value=2.8e-07  Score=87.63  Aligned_cols=72  Identities=19%  Similarity=0.147  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-------cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-------LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-------~~fdvv~  233 (259)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++++.|+.+++++++|+.+.+       ..||.|+
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  330 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL  330 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence            46789999999999999999986 2 3489999999999999999999999988999999998754       2567555


Q ss_pred             e
Q 025035          234 S  234 (259)
Q Consensus       234 ~  234 (259)
                      .
T Consensus       331 ~  331 (434)
T PRK14901        331 L  331 (434)
T ss_pred             E
Confidence            3

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=9.5e-08  Score=77.07  Aligned_cols=68  Identities=21%  Similarity=0.239  Sum_probs=59.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFI  231 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdv  231 (259)
                      ..+++++|+|||.|.+++..+..+...|+|+|+.+.+++.+++|+....+ ++.++++|+.++.+   .||.
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDt  117 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDT  117 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEee
Confidence            46899999999999999888877777999999999999999999998877 78999999988644   4553

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.54  E-value=4.2e-07  Score=66.32  Aligned_cols=73  Identities=27%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEecccCc
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSERNEH  239 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~v~~h  239 (259)
                      +|||+|||.|..+..+++.+..+++++|+++.+++.+++.....+..+++++..|+.+..    ..+|+++.....+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~   77 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLH   77 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcccee
Confidence            489999999999999998545699999999999999986544444457999999988853    2677666555443

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.53  E-value=1.2e-07  Score=80.13  Aligned_cols=91  Identities=16%  Similarity=0.119  Sum_probs=66.7

Q ss_pred             cchhccccchHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEeccc
Q 025035          146 NHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNIS  223 (259)
Q Consensus       146 ~~~~~~~~~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~  223 (259)
                      +..+..++.+...+... ..+.++||+.||+|.+++..+.+|+.+|+.||.++.+++..++|++..++.+ ++.+++|..
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~  102 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAF  102 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHH
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHH
Confidence            33445555555555554 5789999999999999999999999999999999999999999999988865 899999965


Q ss_pred             CC-------CcceeEEEecc
Q 025035          224 VQ-------ILTYFICKSER  236 (259)
Q Consensus       224 ~~-------~~~fdvv~~~v  236 (259)
                      ..       ...||+|+.+-
T Consensus       103 ~~l~~~~~~~~~fDiIflDP  122 (183)
T PF03602_consen  103 KFLLKLAKKGEKFDIIFLDP  122 (183)
T ss_dssp             HHHHHHHHCTS-EEEEEE--
T ss_pred             HHHHhhcccCCCceEEEECC
Confidence            42       23788776543

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.53  E-value=2.6e-07  Score=79.38  Aligned_cols=62  Identities=27%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCc---ceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QIL---TYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~---~fdv  231 (259)
                      .+.-|||||||+|.-+..|...|. ..+|+|+|+.|++.|.+..-     .-.++.+|+-+ +++   .||-
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg  115 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDG  115 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccce
Confidence            367899999999999999999886 89999999999999997321     23578888887 333   7883

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.53  E-value=3.9e-07  Score=86.49  Aligned_cols=71  Identities=11%  Similarity=0.043  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~  234 (259)
                      .++.+|||+|||+|..+..+++.+. .+|+++|+|+.+++.+++++++.|+ +++++++|+.+.+     ..||.|+.
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~  319 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDGQPFDRILL  319 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhcccCCCCEEEE
Confidence            5678999999999999999998743 4899999999999999999999887 5789999998643     25776553

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.51  E-value=2.3e-07  Score=86.03  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=54.0

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +.+|||+|||+|.+++.+++.. .+|+|+|+++.|++.|+++++.+++.+++|+++|+.+
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            3479999999999999998874 5999999999999999999999998889999999876

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.51  E-value=1.1e-06  Score=80.45  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc-CCc-ceEEEE-ecccCC-------CcceeEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-MNISVQ-------ILTYFIC  232 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~-~l~-~i~~i~-~D~~~~-------~~~fdvv  232 (259)
                      .+.+|||||||+|.+...++.+ ...+++|+|+++.+++.|+++++.+ ++. +|++.+ .+....       ...||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            3579999999999888777765 2348999999999999999999998 675 477754 232221       1256766


Q ss_pred             EecccCccc
Q 025035          233 KSERNEHYT  241 (259)
Q Consensus       233 ~~~v~~h~~  241 (259)
                      .++--.|..
T Consensus       194 vcNPPf~~s  202 (321)
T PRK11727        194 LCNPPFHAS  202 (321)
T ss_pred             EeCCCCcCc
Confidence            655544443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.48  E-value=4.3e-07  Score=78.19  Aligned_cols=67  Identities=16%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-C-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f  229 (259)
                      .++.+|||||||+|.++..++++. . .+|+|||+++ |          .++.+++++++|+.+..           ..+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~  118 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV  118 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence            467899999999999999999873 2 4899999998 2          12346899999999842           268


Q ss_pred             eEEEecccCcc
Q 025035          230 FICKSERNEHY  240 (259)
Q Consensus       230 dvv~~~v~~h~  240 (259)
                      |+|++++..|.
T Consensus       119 D~V~S~~~~~~  129 (209)
T PRK11188        119 QVVMSDMAPNM  129 (209)
T ss_pred             CEEecCCCCcc
Confidence            88887765544

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=6.9e-07  Score=84.81  Aligned_cols=62  Identities=26%  Similarity=0.333  Sum_probs=57.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ++.+|||+-||.|.+++.|+++. .+|+|+|+++.+++.|+++++.+++.|++|+.+++++..
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~~~-~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~  354 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAKRV-KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT  354 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcccC-CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence            55799999999999999999874 499999999999999999999999989999999998843

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.47  E-value=3.6e-07  Score=84.99  Aligned_cols=58  Identities=19%  Similarity=0.323  Sum_probs=53.6

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+|||++||+|.+++.+++. ..+|+|+|+|+.|++.++++++.+++.+++|+++|+.+
T Consensus       208 ~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            57999999999999988886 45999999999999999999999998889999999876

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.44  E-value=4.9e-07  Score=77.08  Aligned_cols=59  Identities=25%  Similarity=0.409  Sum_probs=51.7

Q ss_pred             CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ..+||||||.|.++..+|+. +...++|+|++...+..+.+++...++.|+.++++|+..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            38999999999999999998 445999999999999999999999999999999999988

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK04457 spermidine synthase; Provisional

Probab=98.44  E-value=7.9e-07  Score=79.15  Aligned_cols=72  Identities=14%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC----CcceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      ++.+|||||||+|.++..+++. +..+|+++|+++.+++.|++++...+. ++++++++|+.+.    +..||+|+.+
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4679999999999999999876 445899999999999999998765443 4799999998652    3367876654

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.43  E-value=6.6e-07  Score=81.19  Aligned_cols=73  Identities=23%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC--CcceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ--ILTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~--~~~fdvv~~~v  236 (259)
                      ++++.|||+|||+|.++.+.++.|..+|.+++-|+ |.+.|++..+.+++. +|+.|.+-+++.  |...|+++++-
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEP  251 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEP  251 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEecc
Confidence            57889999999999999999999999999999998 999999999888775 599999999885  44778776653

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.42  E-value=4.8e-07  Score=84.64  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             HhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc-------
Q 025035          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL-------  227 (259)
Q Consensus       157 ~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~-------  227 (259)
                      ..+....++++||++.|=||.+++..+..|.++||+||.|..+|+.|++|++.+|+.  .+.|+++|+.+...       
T Consensus       210 ~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~  289 (393)
T COG1092         210 RALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGE  289 (393)
T ss_pred             HHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCC
Confidence            334444569999999999999999999999989999999999999999999999984  48999999988422       


Q ss_pred             ceeEEEe
Q 025035          228 TYFICKS  234 (259)
Q Consensus       228 ~fdvv~~  234 (259)
                      .||+|+.
T Consensus       290 ~fDlIil  296 (393)
T COG1092         290 KFDLIIL  296 (393)
T ss_pred             cccEEEE
Confidence            7887653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.41  E-value=4.7e-07  Score=80.70  Aligned_cols=76  Identities=12%  Similarity=0.079  Sum_probs=53.7

Q ss_pred             CCCEEEEEccCcCh----hHHHHHhcC------CCcEEEEeCCHHHHHHHHHHhHh----cC------------------
Q 025035          164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------  211 (259)
Q Consensus       164 ~~~~VLDiGcG~G~----~~~~la~~g------~~~V~giD~S~~~i~~a~~~~~~----~~------------------  211 (259)
                      ++.+|||+|||+|.    +++.+++.+      ..+|+|+|+|+.||+.|++..-.    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            35699999999997    455555541      13899999999999999985310    01                  


Q ss_pred             ----C-cceEEEEecccCCCc---ceeEEEecccCc
Q 025035          212 ----F-SCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       212 ----l-~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                          + .+|+|.++|+.+.+.   .||+|++..+.|
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~  214 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLI  214 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHH
Confidence                1 258999999998643   688666644443

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PTZ00146 fibrillarin; Provisional

Probab=98.40  E-value=9.7e-07  Score=79.48  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=55.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC------CcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ------ILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~------~~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. + ...|+++|+|+.|++.+.+.++..  .||.+++.|+...      ...+|+|+.
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence            46789999999999999999998 3 248999999998765555554332  4789999998753      125777776


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      .+.
T Consensus       209 Dva  211 (293)
T PTZ00146        209 DVA  211 (293)
T ss_pred             eCC
Confidence            664

>PRK00811 spermidine synthase; Provisional

Probab=98.40  E-value=1.3e-06  Score=78.56  Aligned_cols=75  Identities=16%  Similarity=0.188  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCC----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      .+.+||+||||.|..+..++++ +..+|++||+++.+++.|++.+...+     -++++++.+|+.+.    ...||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            4679999999999999999987 56699999999999999999876432     23699999998763    23788877


Q ss_pred             ecccC
Q 025035          234 SERNE  238 (259)
Q Consensus       234 ~~v~~  238 (259)
                      .+...
T Consensus       156 ~D~~d  160 (283)
T PRK00811        156 VDSTD  160 (283)
T ss_pred             ECCCC
Confidence            76543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.39  E-value=7e-07  Score=73.94  Aligned_cols=58  Identities=21%  Similarity=0.279  Sum_probs=49.7

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ  225 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~  225 (259)
                      .|||+.||.|..++.+|+. +.+|++||+++..++.|+.|++-.|+. +|+|+++|+.+.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~   60 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFEL   60 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHH
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHH
Confidence            6999999999999999998 459999999999999999999999975 699999999884

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.39  E-value=1.8e-06  Score=73.97  Aligned_cols=66  Identities=17%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI  226 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~  226 (259)
                      ...++.+|||+.||.|.+++.+++. ..+.|+++|+++.+++.++++++.+++.+ |..+++|..+..
T Consensus        98 ~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~  165 (200)
T PF02475_consen   98 LVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL  165 (200)
T ss_dssp             C--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred             cCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence            3456889999999999999999983 34489999999999999999999999865 899999998853

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.37  E-value=7.2e-07  Score=76.62  Aligned_cols=107  Identities=20%  Similarity=0.228  Sum_probs=76.1

Q ss_pred             CchhhHHHHHHHHHhhhhcc-CCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEE
Q 025035           93 GLQSYWDSAYADELANFREH-GHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI  171 (259)
Q Consensus        93 ~~~~yWd~~Y~~~~~~f~~~-g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDi  171 (259)
                      ....||..+|. ....|.+. +-.-+.||.-+... ....+...                       +........|+|.
T Consensus        47 ~l~kywk~ryr-lfsrfd~gi~md~e~wfsvTpe~-ia~~iA~~-----------------------v~~~~~~~~iida  101 (263)
T KOG2730|consen   47 ELFKYWKNRYR-LFSRFDSGIYMDREGWFSVTPEK-IAEHIANR-----------------------VVACMNAEVIVDA  101 (263)
T ss_pred             HHHHHHHHHHH-HHHhhccceeecccceEEeccHH-HHHHHHHH-----------------------HHHhcCcchhhhh
Confidence            35889999875 33444433 23445577654332 22222211                       1111234689999


Q ss_pred             ccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ  225 (259)
Q Consensus       172 GcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~  225 (259)
                      .||.|..++.++.++. .|++||+++.-|..|++|++-.|++ +|+|+++|+.++
T Consensus       102 f~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~  155 (263)
T KOG2730|consen  102 FCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDL  155 (263)
T ss_pred             hhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHH
Confidence            9999999999999876 9999999999999999999999997 499999999884

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.36  E-value=4.2e-07  Score=78.15  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=61.4

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC---------Ccc
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ---------ILT  228 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~---------~~~  228 (259)
                      ...++++||+||||+|.-++.+++. + ..+|+.+|+++...+.|++++++.|+. +|+++.+|+.+.         ...
T Consensus        42 ~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   42 RLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             HhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            3356789999999999999999986 2 349999999999999999999999985 599999999762         125


Q ss_pred             eeEEEecc
Q 025035          229 YFICKSER  236 (259)
Q Consensus       229 fdvv~~~v  236 (259)
                      ||+|+.+.
T Consensus       122 fD~VFiDa  129 (205)
T PF01596_consen  122 FDFVFIDA  129 (205)
T ss_dssp             EEEEEEES
T ss_pred             eeEEEEcc
Confidence            78766554

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.35  E-value=2.9e-06  Score=72.34  Aligned_cols=68  Identities=19%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceE-EEEecccCCCc----ceeEEE
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVMNISVQIL----TYFICK  233 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~-~i~~D~~~~~~----~fdvv~  233 (259)
                      ..||++|||+|..-.++--.+..+||++|+++.|-+.+.+.++.....++. |++++.++++.    ++|+|.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV  150 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVV  150 (252)
T ss_pred             cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEE
Confidence            468999999999887766554459999999999999999998877655665 99999999773    666443

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.32  E-value=1.1e-06  Score=81.50  Aligned_cols=58  Identities=26%  Similarity=0.370  Sum_probs=48.2

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+|||+.||.|.+++.|++.. .+|+|||+++.+++.|+++++.+++.|++|+++++.+
T Consensus       198 ~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  198 GDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAED  255 (352)
T ss_dssp             TEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHH
T ss_pred             CcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccc
Confidence            489999999999999999984 4999999999999999999999999999999987765

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.32  E-value=9.9e-07  Score=77.01  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL  202 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~  202 (259)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+++.|+..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3578999999999999999999988799999999988765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.31  E-value=2.2e-06  Score=72.22  Aligned_cols=63  Identities=17%  Similarity=0.114  Sum_probs=47.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f  229 (259)
                      .++.+|||+|||+|.++..++++.  ..+|+++|+|+.+           +..+++++++|+.+..           ..|
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence            568899999999999999888763  3479999999854           1236888999987632           257


Q ss_pred             eEEEecc
Q 025035          230 FICKSER  236 (259)
Q Consensus       230 dvv~~~v  236 (259)
                      |+++++.
T Consensus       100 D~V~~~~  106 (188)
T TIGR00438       100 DVVMSDA  106 (188)
T ss_pred             cEEEcCC
Confidence            8776644

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.31  E-value=2.1e-06  Score=78.91  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             chHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCcceeEE
Q 025035          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQILTYFIC  232 (259)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~~fdvv  232 (259)
                      +-.+.+.....|.+|||+-+|-|.+++.+++.|..+|+++|+++.+++.+++|++.+++.+ +..+++|........   
T Consensus       178 ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---  254 (341)
T COG2520         178 ERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---  254 (341)
T ss_pred             HHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---
Confidence            3334444556789999999999999999999987679999999999999999999999876 899999998854321   


Q ss_pred             EecccCccccceeeeecccc
Q 025035          233 KSERNEHYTFDLYQIGYYMS  252 (259)
Q Consensus       233 ~~~v~~h~~~D~i~~~~~~~  252 (259)
                             ..+|.+++|+-.+
T Consensus       255 -------~~aDrIim~~p~~  267 (341)
T COG2520         255 -------GVADRIIMGLPKS  267 (341)
T ss_pred             -------ccCCEEEeCCCCc
Confidence                   4555666665443

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.28  E-value=1.8e-06  Score=77.74  Aligned_cols=72  Identities=17%  Similarity=0.125  Sum_probs=58.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC------CcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ------ILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~------~~~fdvv~~  234 (259)
                      .++++|||+-|=+|.+++..+..|..+|++||.|..+++.+++|+..+|+.  +++|+++|+.+.      ...||+|..
T Consensus       122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            468899999999999999999888889999999999999999999999874  599999999872      127776543

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.27  E-value=3.7e-06  Score=79.85  Aligned_cols=71  Identities=10%  Similarity=-0.029  Sum_probs=56.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC-----cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI-----LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~-----~~fdvv~  233 (259)
                      .++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++++.|+. +++++++|..+..     ..||.|+
T Consensus       237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vl  314 (426)
T TIGR00563       237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRIL  314 (426)
T ss_pred             CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEE
Confidence            46789999999999999999986 4358999999999999999999999875 2445777766532     2466554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02476 O-methyltransferase

Probab=98.26  E-value=3.2e-06  Score=75.77  Aligned_cols=72  Identities=10%  Similarity=0.065  Sum_probs=60.7

Q ss_pred             cchHHhhccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      ..+..++....++++|||||||+|..++.++.. + ..+|+++|.++++++.|++++++.|+. +|+++.+|+.+
T Consensus       107 g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e  181 (278)
T PLN02476        107 AQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE  181 (278)
T ss_pred             HHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            444455555567899999999999999999975 2 237999999999999999999999986 59999999866

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.26  E-value=2.2e-06  Score=74.80  Aligned_cols=60  Identities=22%  Similarity=0.287  Sum_probs=55.1

Q ss_pred             CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+||||||.|.++..+|++ +...++|||+....+..|.+.+...++.|+.+++.|+...
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~  110 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEV  110 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHH
Confidence            47999999999999999998 4448999999999999999999999988999999999883

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.26  E-value=4.7e-06  Score=70.32  Aligned_cols=96  Identities=13%  Similarity=0.064  Sum_probs=77.7

Q ss_pred             ccccchhccccchHHhhcc-CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEe
Q 025035          143 HMLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVM  220 (259)
Q Consensus       143 ~~~~~~~~~~~~~~~~l~~-~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~  220 (259)
                      .+.+..+..++.+...+.. ...+.++||+-+|+|.+++..+.+|..+++.||.+..++...++|.+..++. +.+++..
T Consensus        21 ~~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~  100 (187)
T COG0742          21 GTRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRN  100 (187)
T ss_pred             CcCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEee
Confidence            3445566667777777777 4789999999999999999999999999999999999999999999988853 6889999


Q ss_pred             cccCC----Cc--ceeEEEecccC
Q 025035          221 NISVQ----IL--TYFICKSERNE  238 (259)
Q Consensus       221 D~~~~----~~--~fdvv~~~v~~  238 (259)
                      |+...    ..  .||+|+.+--.
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy  124 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPY  124 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCC
Confidence            98842    22  38887765443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.25  E-value=3.6e-06  Score=74.48  Aligned_cols=83  Identities=18%  Similarity=0.151  Sum_probs=69.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~~h~  240 (259)
                      .++..||++|.|+|.++..|.+.|. +|+++++.+.|+....++.+..... .++.+++|....++ .||+|..++-..+
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd~cVsNlPyqI  135 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFDGCVSNLPYQI  135 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccceeeccCCccc
Confidence            4678999999999999999999976 9999999999999999987654433 48999999999875 7899988776666


Q ss_pred             ccceee
Q 025035          241 TFDLYQ  246 (259)
Q Consensus       241 ~~D~i~  246 (259)
                      +.++++
T Consensus       136 SSp~vf  141 (315)
T KOG0820|consen  136 SSPLVF  141 (315)
T ss_pred             cCHHHH
Confidence            555543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.23  E-value=4.9e-06  Score=79.46  Aligned_cols=74  Identities=23%  Similarity=0.221  Sum_probs=56.5

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-----CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc--ceeEEEecc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL--TYFICKSER  236 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-----~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~~v  236 (259)
                      +..|||||||+|.++...++.+     ..+|++|+.|+.++...+++.+.++.. +|+++++|+++...  ..|++.++.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            5789999999999998877764     459999999999998888877777774 59999999999644  799988887


Q ss_pred             cC
Q 025035          237 NE  238 (259)
Q Consensus       237 ~~  238 (259)
                      +-
T Consensus       267 LG  268 (448)
T PF05185_consen  267 LG  268 (448)
T ss_dssp             -B
T ss_pred             cC
Confidence            63

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.20  E-value=7.4e-06  Score=68.86  Aligned_cols=72  Identities=22%  Similarity=0.178  Sum_probs=54.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC-Cc---------EEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF-SD---------LTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---T  228 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~---------V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~  228 (259)
                      .++..|||..||+|.+++..+..+. ..         ++|+|+++.+++.|++|++..++.. |.+.+.|+.++++   .
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~~  106 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDGS  106 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTSB
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccCC
Confidence            3567999999999999998877632 13         8899999999999999999998864 8999999999773   5


Q ss_pred             eeEEEe
Q 025035          229 YFICKS  234 (259)
Q Consensus       229 fdvv~~  234 (259)
                      +|+|..
T Consensus       107 ~d~Ivt  112 (179)
T PF01170_consen  107 VDAIVT  112 (179)
T ss_dssp             SCEEEE
T ss_pred             CCEEEE
Confidence            565443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.20  E-value=4.9e-06  Score=73.74  Aligned_cols=80  Identities=11%  Similarity=0.123  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcc----eeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILT----YFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~----fdvv~~~v~~h  239 (259)
                      ++..|||||+|.|.++..|++++. +|+++++.+.++...++....  ..+++.+.+|+.+..+.    +..|.+++-.+
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~--~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~  106 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP--YDNLTVINGDALKFDFPSLAQPYKVVANLPYN  106 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc--ccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence            467999999999999999999976 899999999999999998752  24799999999997653    46677777666


Q ss_pred             cccceee
Q 025035          240 YTFDLYQ  246 (259)
Q Consensus       240 ~~~D~i~  246 (259)
                      ++.+++.
T Consensus       107 Isspii~  113 (259)
T COG0030         107 ISSPILF  113 (259)
T ss_pred             ccHHHHH
Confidence            6655543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=1.7e-06  Score=82.25  Aligned_cols=62  Identities=26%  Similarity=0.340  Sum_probs=56.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+..+||+.||+|.+++.+++. ..+|+||++++.+++-|+.+++.+|++|.+|+++-++++
T Consensus       382 ~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  382 PADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL  443 (534)
T ss_pred             CCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence            35678999999999999999986 669999999999999999999999999999999966663

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.18  E-value=6.4e-06  Score=65.77  Aligned_cols=61  Identities=13%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             EEEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      .|||+|||.|.++..+++.+.. +|+++|+++.+++.++++++.+++.++++++..+.+...
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~~g   62 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDRDG   62 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCCCC
Confidence            4899999999999999988653 799999999999999999988887778888888776544

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR00417 speE spermidine synthase

Probab=98.17  E-value=4.6e-06  Score=74.48  Aligned_cols=74  Identities=22%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+||+||||+|..+..+++.+ ..+|+++|+++.+++.+++.+...+    .++++++.+|..+.    ...||+|..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            35699999999999999998874 5689999999999999999875432    13688888887652    347887766


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       152 D~~  154 (270)
T TIGR00417       152 DST  154 (270)
T ss_pred             eCC
Confidence            543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.16  E-value=3.9e-06  Score=78.63  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEe
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKS  234 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~  234 (259)
                      +.+|||++||+|..++.++.. +..+|+++|+++.+++.+++|++.+++.++++.++|+....   ..||+|..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence            358999999999999999876 54589999999999999999999999877889999987632   35675543

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.14  E-value=8.3e-06  Score=68.11  Aligned_cols=61  Identities=21%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC--C-cceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~--l-~~i~~i~~D~~~  224 (259)
                      .++.+|||||||+|..++.+++. +..+|+..|+.+ .++.++.+++.++  . .++++...|+.+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence            46889999999999999999998 667999999999 9999999998876  2 358888888866

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.10  E-value=1.2e-06  Score=75.84  Aligned_cols=42  Identities=36%  Similarity=0.476  Sum_probs=37.6

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA  207 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~  207 (259)
                      -.++||+|||||..+..+... ..+++|+|+|++|++.|.++-
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg  167 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKG  167 (287)
T ss_pred             cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhcc
Confidence            369999999999999999888 459999999999999998853

>PLN02366 spermidine synthase

Probab=98.09  E-value=1.9e-05  Score=71.98  Aligned_cols=75  Identities=16%  Similarity=0.252  Sum_probs=59.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccC----C-CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISV----Q-ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~----~-~~~fdvv~  233 (259)
                      .+++||+||||.|..+..+++.+ ..+|+.+|+++.+++.|++.+...  ++  ++++++.+|+..    . ...||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            46899999999999999999884 458999999999999999987542  22  369999999754    2 23688877


Q ss_pred             ecccC
Q 025035          234 SERNE  238 (259)
Q Consensus       234 ~~v~~  238 (259)
                      .+...
T Consensus       171 ~D~~d  175 (308)
T PLN02366        171 VDSSD  175 (308)
T ss_pred             EcCCC
Confidence            65543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.08  E-value=1.8e-05  Score=68.61  Aligned_cols=77  Identities=16%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             hccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEE-ecccCC-----Ccce
Q 025035          159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-MNISVQ-----ILTY  229 (259)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~-~D~~~~-----~~~f  229 (259)
                      +....++++||+||++.|.-++.|+.. + ..+++.||+++++++.|+++.++.|+.+ |..+. +|..+.     ..+|
T Consensus        54 L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~f  133 (219)
T COG4122          54 LARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSF  133 (219)
T ss_pred             HHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCc
Confidence            344467899999999999999999987 3 4489999999999999999999999876 88888 466552     2367


Q ss_pred             eEEEec
Q 025035          230 FICKSE  235 (259)
Q Consensus       230 dvv~~~  235 (259)
                      |+|+..
T Consensus       134 DliFID  139 (219)
T COG4122         134 DLVFID  139 (219)
T ss_pred             cEEEEe
Confidence            766543

>PRK03612 spermidine synthase; Provisional

Probab=98.07  E-value=9.2e-06  Score=79.08  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=58.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHh--Hhc---CC--cceEEEEecccCC----CcceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NRD---GF--SCIKFLVMNISVQ----ILTYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~--~~~---~l--~~i~~i~~D~~~~----~~~fdv  231 (259)
                      ++++|||||||+|..+..+++++. .+|+++|+++.+++.++++.  ...   .+  ++++++++|..+.    +..||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            468999999999999999998854 69999999999999999842  211   11  4699999998872    337887


Q ss_pred             EEeccc
Q 025035          232 CKSERN  237 (259)
Q Consensus       232 v~~~v~  237 (259)
                      |..+..
T Consensus       377 Ii~D~~  382 (521)
T PRK03612        377 IIVDLP  382 (521)
T ss_pred             EEEeCC
Confidence            776643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=2.2e-05  Score=69.03  Aligned_cols=75  Identities=20%  Similarity=0.179  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      .++.+|||.|.|+|.++..|++. | ..+|+.+|+-+..++.|++|++..++.+ +++..+|+.+..+  .||.+..++.
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp  172 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLP  172 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCC
Confidence            67899999999999999999975 3 3599999999999999999999988876 9999999998543  6776665553

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.04  E-value=1.5e-05  Score=72.11  Aligned_cols=61  Identities=20%  Similarity=0.118  Sum_probs=52.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++..+||.+||.|..+..+++..  ..+|+|+|.++.|++.+++++..  ..+++++++|+.+.
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l   80 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNL   80 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHH
Confidence            356799999999999999999983  35899999999999999998765  34799999999874

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.01  E-value=1.1e-05  Score=71.23  Aligned_cols=69  Identities=14%  Similarity=0.162  Sum_probs=58.0

Q ss_pred             HHhhccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      ...+....+.++||+||+++|.-++.+++. + ..+|+.+|+++...+.|+++.++.|+. +|+++.+++.+
T Consensus        71 L~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         71 LNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             HHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            333344457889999999999999999875 2 348999999999999999999999975 59999999877

>PRK01581 speE spermidine synthase; Validated

Probab=98.00  E-value=1.2e-05  Score=74.41  Aligned_cols=74  Identities=23%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHh-----Hhc--CCcceEEEEecccCC----Cccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA-----NRD--GFSCIKFLVMNISVQ----ILTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~-----~~~--~l~~i~~i~~D~~~~----~~~fd  230 (259)
                      ..+.+||+||||.|..+..+++.+ ..+|++||+++.+++.|++..     .+.  .-++++++.+|+.+.    ...||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            456899999999999999999874 469999999999999999721     111  124799999999873    23688


Q ss_pred             EEEecc
Q 025035          231 ICKSER  236 (259)
Q Consensus       231 vv~~~v  236 (259)
                      +|+.+.
T Consensus       229 VIIvDl  234 (374)
T PRK01581        229 VIIIDF  234 (374)
T ss_pred             EEEEcC
Confidence            777664

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.99  E-value=5.2e-06  Score=72.28  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=49.7

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC---cceeEEEecccCcc
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI---LTYFICKSERNEHY  240 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~---~~fdvv~~~v~~h~  240 (259)
                      +.++|+|||+|..++-++.. +.+|+|+|+|+.||+.|++.....-. ...++...++..+.   .+.|+|...-..|.
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence            38999999999888888888 66999999999999999885432111 12344434443332   25665554444443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.99  E-value=4.6e-05  Score=67.31  Aligned_cols=77  Identities=17%  Similarity=0.215  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC------cceeEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI------LTYFIC  232 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~------~~fdvv  232 (259)
                      +.+|.+|||.|.|+|.++..|++.  +..+|+.+|+.+..++.|+++++..|+. ++++.+.|+.+.-      ..+|.+
T Consensus        38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence            367999999999999999999986  3449999999999999999999999986 5999999996521      257766


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.++-.
T Consensus       118 fLDlp~  123 (247)
T PF08704_consen  118 FLDLPD  123 (247)
T ss_dssp             EEESSS
T ss_pred             EEeCCC
Confidence            665543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.99  E-value=9.2e-05  Score=62.62  Aligned_cols=72  Identities=17%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             EEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CCcceeEEEecccC
Q 025035          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QILTYFICKSERNE  238 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~~~fdvv~~~v~~  238 (259)
                      +++|||+|.|.-++.++-. +..+++.+|.+..-+...+......|+.|++++++.+++  ....||++.+--+.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc
Confidence            8999999999999998876 445899999999999999999999999899999999999  55589977665544

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.93  E-value=2.4e-05  Score=71.74  Aligned_cols=67  Identities=22%  Similarity=0.149  Sum_probs=59.5

Q ss_pred             ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe-cccCCCc
Q 025035          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM-NISVQIL  227 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~-D~~~~~~  227 (259)
                      ....+|..|||--||||.+++...-.|. +++|+|++..|++-|+.|++..++....++.. |+.++++
T Consensus       193 a~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl  260 (347)
T COG1041         193 ARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL  260 (347)
T ss_pred             hccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence            3446788999999999999999999887 99999999999999999999999877766666 9999876

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.91  E-value=4.2e-05  Score=64.12  Aligned_cols=59  Identities=17%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             CCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +.-+||||||+|..+-+|++.  +.....++|+++.+++..++.++.++. ++..++.|+..
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~  104 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLS  104 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHh
Confidence            567999999999999999987  445788999999999999999988876 68888888876

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.86  E-value=3.4e-05  Score=62.19  Aligned_cols=63  Identities=25%  Similarity=0.423  Sum_probs=51.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHhHhcC--C-cceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~-----~g~~~V~giD~S~~~i~~a~~~~~~~~--l-~~i~~i~~D~~~~  225 (259)
                      .+..+|+|+|||.|.+++.|+.     ....+|+|||.++..++.+.++.++.+  . .++++..+++.+.
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADE   94 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhh
Confidence            3567999999999999999999     534499999999999999999988776  3 3577777776543

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.82  E-value=2.4e-05  Score=66.29  Aligned_cols=69  Identities=19%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~  233 (259)
                      .+++|||+|+|+|..++..++.|...|+..|+.+..+...+-|++.+|+ .|.+...|+.-.+..+|+++
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g~~~~~Dl~L  147 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIGSPPAFDLLL  147 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccCCCcceeEEE
Confidence            4899999999999999999999999999999999888888889988886 79999999888666777543

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.82  E-value=3.4e-05  Score=72.13  Aligned_cols=70  Identities=9%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             CEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035          166 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE  235 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~  235 (259)
                      .+|||+.||+|..++.++.+  |..+|+++|+++.+++.+++|++.+++.+++++++|+....    ..||+|..+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            58999999999999999998  66799999999999999999999988877899999988642    256765443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.79  E-value=7.5e-05  Score=65.17  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=53.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      +..+|||||+|.|.++..++++ +..+++.+|. +.+++.+++      ..+|+++.+|+.+....+|+++..-++|.
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~~P~~D~~~l~~vLh~  170 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDPLPVADVYLLRHVLHD  170 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTCCSSESEEEEESSGGG
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHHhhhccccceeeehhhhh
Confidence            4578999999999999999988 4459999999 778888888      24799999999864445886665555554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.71  E-value=4.5e-05  Score=64.29  Aligned_cols=73  Identities=14%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~  238 (259)
                      ...+.|+|+|+|.++...+.. ..+|++|+..+.-.+.|.+|++-.|..|++.+.+|+....+ ..|++.++++.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlD  106 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLD  106 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhh
Confidence            368999999999999988887 56999999999999999999887888789999999999877 77877777654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.69  E-value=0.00014  Score=67.67  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------S-------DLTGVDYSEDAINL  202 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------~-------~V~giD~S~~~i~~  202 (259)
                      .++..++|.-||+|++++..|..+.                                 .       .++|+|+++.+|+.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            3456899999999999999887742                                 1       27799999999999


Q ss_pred             HHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEe
Q 025035          203 AQSLANRDGFSC-IKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       203 a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      |+.|+...|+.. |+|.++|+..+..   .++++.+
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~  305 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVIS  305 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEe
Confidence            999999999975 9999999998543   4555444

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.68  E-value=0.00031  Score=60.74  Aligned_cols=72  Identities=18%  Similarity=0.145  Sum_probs=60.9

Q ss_pred             CCEEEEEccCcChhHHHHHh-cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--c-eeEEEecc
Q 025035          165 SWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--T-YFICKSER  236 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~-~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~-fdvv~~~v  236 (259)
                      +.+++|||+|.|.-++.++- .+..+|+-+|....-+...+...+..+++|++++++.+++...  . ||++.+..
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence            57999999999999999883 3444799999999999999999999999889999999998654  3 88665543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.67  E-value=0.00012  Score=71.20  Aligned_cols=61  Identities=18%  Similarity=0.204  Sum_probs=53.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+..+||||||.|.++..+|+. +...++|+|++...+..+.+.+...++.|+.+++.|+..
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~  408 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDL  408 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            3568999999999999999998 445899999999999999888888888899998887754

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.65  E-value=0.00014  Score=64.72  Aligned_cols=61  Identities=23%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      ++..|||||+|.|.++..|++.+ .+|+++|+++.+++..+++...  .++++++.+|+.+...
T Consensus        30 ~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   30 EGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDL   90 (262)
T ss_dssp             TTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCG
T ss_pred             CCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--cccceeeecchhcccc
Confidence            57899999999999999999997 5999999999999999987762  2479999999998655

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.65  E-value=0.00016  Score=72.85  Aligned_cols=72  Identities=28%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-------------C------------------------------CCcEEEEeCCHHHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-------------G------------------------------FSDLTGVDYSEDAI  200 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-------------g------------------------------~~~V~giD~S~~~i  200 (259)
                      ++..++|.+||+|.+++..+..             +                              ..+++|+|+++.++
T Consensus       190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av  269 (702)
T PRK11783        190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI  269 (702)
T ss_pred             CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence            4678999999999999887652             0                              11599999999999


Q ss_pred             HHHHHHhHhcCCcc-eEEEEecccCCCc-----ceeEEEec
Q 025035          201 NLAQSLANRDGFSC-IKFLVMNISVQIL-----TYFICKSE  235 (259)
Q Consensus       201 ~~a~~~~~~~~l~~-i~~i~~D~~~~~~-----~fdvv~~~  235 (259)
                      +.|++|+...|+.+ |+|.++|+.+.+.     .+|+|..+
T Consensus       270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence            99999999999864 9999999988643     26655444

>PLN02823 spermine synthase

Probab=97.61  E-value=0.00017  Score=66.52  Aligned_cols=74  Identities=8%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+++||.||+|.|..+..+++. +..+|+.||+++.+++.|++.....+    -++++++.+|..+.    ...||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4679999999999999998886 45689999999999999999875431    24699999998873    237888777


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       183 D~~  185 (336)
T PLN02823        183 DLA  185 (336)
T ss_pred             cCC
Confidence            653

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=97.61  E-value=9e-05  Score=64.79  Aligned_cols=47  Identities=28%  Similarity=0.364  Sum_probs=42.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR  209 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~  209 (259)
                      ..+..+|||||-+|.+++.+++. |...|+|+||.+..|..|++++..
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            45789999999999999999997 777999999999999999998754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.60  E-value=0.0003  Score=60.52  Aligned_cols=57  Identities=26%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             EEEEccCcChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035          168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV  224 (259)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~  224 (259)
                      |.||||--|.++..|.++|.. +++++|+++..++.|+++.++.|+.+ |++..+|-.+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~   59 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE   59 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence            689999999999999999765 89999999999999999999998754 9999999766

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.00027  Score=67.22  Aligned_cols=76  Identities=24%  Similarity=0.365  Sum_probs=61.2

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCccccc
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHYTFD  243 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~D  243 (259)
                      ++|-+|||+-.+...+.+.|+..|+.+|+|+..++.+...-.+ .-..+.+..+|+.++.+   +|+++    ++....|
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~-~~~~~~~~~~d~~~l~fedESFdiV----IdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAK-ERPEMQMVEMDMDQLVFEDESFDIV----IDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhcccc-CCcceEEEEecchhccCCCcceeEE----EecCccc
Confidence            8999999999999999999999999999999999988876542 22358999999999766   78875    4555555


Q ss_pred             eeee
Q 025035          244 LYQI  247 (259)
Q Consensus       244 ~i~~  247 (259)
                      ....
T Consensus       126 al~~  129 (482)
T KOG2352|consen  126 ALFE  129 (482)
T ss_pred             cccC
Confidence            5544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.57  E-value=0.00045  Score=62.05  Aligned_cols=62  Identities=19%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHhHhcCCcce-EEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i-~~i~~D~~~~  225 (259)
                      .+-+||||.||.|++.+-.... +  ..+|...|+|+..++..++.++..|+.++ +|.++|+.+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            4679999999999998877765 3  35899999999999999999999999885 9999999883

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.53  E-value=8.2e-05  Score=64.63  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ....++|||||-|.+...+..++..+++-+|.|-.|++.++..- ..++ .....++|-+.+++   ++|++++.+..|.
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslHW  149 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLHW  149 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhhh
Confidence            35689999999999999999999889999999999999998742 2333 45666778777766   7888888888887


Q ss_pred             ccce
Q 025035          241 TFDL  244 (259)
Q Consensus       241 ~~D~  244 (259)
                      ..|+
T Consensus       150 ~NdL  153 (325)
T KOG2940|consen  150 TNDL  153 (325)
T ss_pred             hccC
Confidence            7664

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.48  E-value=0.00048  Score=66.26  Aligned_cols=71  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~  233 (259)
                      .++.+|||+|||.|.-+..++..  +...|+++|+++.-++.+++++++.|+.++...+.|...+.    ..||.|+
T Consensus       112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~IL  188 (470)
T PRK11933        112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAIL  188 (470)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEE
Confidence            56889999999999999999886  23489999999999999999999999988999999987642    2566544

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.47  E-value=0.00047  Score=59.27  Aligned_cols=64  Identities=17%  Similarity=0.229  Sum_probs=43.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhH-------hcCC--cceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~-------~~~l--~~i~~i~~D~~~~~  226 (259)
                      .++...+|||||.|......+-. ++.+++|||+.+...+.|+...+       ..|.  .++++.++|+.+.+
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~  114 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD  114 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH
Confidence            35779999999999998877765 77679999999998887766432       2333  35888999988743

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.42  E-value=0.0014  Score=59.43  Aligned_cols=72  Identities=18%  Similarity=0.161  Sum_probs=51.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-----cc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-----LT  228 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--------g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-----~~  228 (259)
                      ++.+|||.+||+|.++..+.+.        ...+++|+|+++.++..|+-++...+..  ++.+.++|....+     ..
T Consensus        46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~  125 (311)
T PF02384_consen   46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQK  125 (311)
T ss_dssp             TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--
T ss_pred             ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            4568999999999999888762        3448999999999999999887666542  3568888876532     26


Q ss_pred             eeEEEec
Q 025035          229 YFICKSE  235 (259)
Q Consensus       229 fdvv~~~  235 (259)
                      ||+|+++
T Consensus       126 ~D~ii~N  132 (311)
T PF02384_consen  126 FDVIIGN  132 (311)
T ss_dssp             EEEEEEE
T ss_pred             cccccCC
Confidence            8876554

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.31  E-value=0.0027  Score=57.55  Aligned_cols=56  Identities=23%  Similarity=0.357  Sum_probs=38.5

Q ss_pred             CCEEEEEccCcChhHHHHH-hc-CCCcEEEEeCCHHHHHHHHHHhHhc-CCc-ceEEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELS-KQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVMN  221 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la-~~-g~~~V~giD~S~~~i~~a~~~~~~~-~l~-~i~~i~~D  221 (259)
                      .-++||||||...+--.|. +. |. +++|.|+++..++.|+++.+++ ++. +|+++...
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~  162 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQK  162 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence            4589999999887633333 33 66 9999999999999999999998 775 48887654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.27  E-value=0.00061  Score=62.70  Aligned_cols=70  Identities=14%  Similarity=0.048  Sum_probs=50.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~~h  239 (259)
                      .++.++|||||++|.++..++++|. +|++||..+ |-    ..+...  ++|+.+..|.....   ..+|++.++++++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~----~~L~~~--~~V~h~~~d~fr~~p~~~~vDwvVcDmve~  281 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MA----QSLMDT--GQVEHLRADGFKFRPPRKNVDWLVCDMVEK  281 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cC----HhhhCC--CCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence            5688999999999999999999987 999999665 21    112112  35777777765532   2677777777764


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      +
T Consensus       282 P  282 (357)
T PRK11760        282 P  282 (357)
T ss_pred             H
Confidence            4

>PRK10742 putative methyltransferase; Provisional

Probab=97.24  E-value=0.0018  Score=57.16  Aligned_cols=70  Identities=13%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc------C--C-cceEEEEecccCC----CcceeEEE
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------G--F-SCIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~------~--l-~~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      +|||+-+|.|..++.++.+|+ +|+++|.++.+....++++++.      +  + .+++++++|..+.    ...||+|+
T Consensus        91 ~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVY  169 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVY  169 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEE
Confidence            899999999999999999998 5999999999999999988774      2  2 3688899988773    22688776


Q ss_pred             eccc
Q 025035          234 SERN  237 (259)
Q Consensus       234 ~~v~  237 (259)
                      .+-.
T Consensus       170 lDPM  173 (250)
T PRK10742        170 LDPM  173 (250)
T ss_pred             ECCC
Confidence            5443

>PHA01634 hypothetical protein

Probab=97.22  E-value=0.0016  Score=51.74  Aligned_cols=50  Identities=10%  Similarity=-0.000  Sum_probs=45.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l  212 (259)
                      ..+++|+|||.+-|.-+++++-+|..+|++++.++...+..+++++.+++
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            46899999999999999999999999999999999999999998887654

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.13  E-value=0.0016  Score=57.50  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccC----CCc-ceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISV----QIL-TYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~----~~~-~fdvv~  233 (259)
                      .+++||-||.|.|..+..+.+.. ..+|++||+++.+++.|++......    -++++++.+|...    ... .||+|.
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            47899999999999999999884 4699999999999999999775432    1379999999866    333 688877


Q ss_pred             ecccC
Q 025035          234 SERNE  238 (259)
Q Consensus       234 ~~v~~  238 (259)
                      .+...
T Consensus       156 ~D~~d  160 (246)
T PF01564_consen  156 VDLTD  160 (246)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            66554

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.0016  Score=58.59  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             CCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      .++||-||.|.|..++.+.+.. ..+++.||+.+..++.+++.+....    -++++.+.+|..+.    +..||+|+.+
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            3699999999999999999984 5699999999999999999875432    24689999998773    2268877766


Q ss_pred             ccCc
Q 025035          236 RNEH  239 (259)
Q Consensus       236 v~~h  239 (259)
                      ....
T Consensus       157 ~tdp  160 (282)
T COG0421         157 STDP  160 (282)
T ss_pred             CCCC
Confidence            6544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.09  E-value=0.00094  Score=59.88  Aligned_cols=48  Identities=31%  Similarity=0.439  Sum_probs=39.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      ..+.+|||+|||+|..+..+...  ...+++++|.|+.|++.++..++..
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            45789999999999877766654  3458999999999999999987643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.09  E-value=0.001  Score=64.79  Aligned_cols=57  Identities=19%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CCEEEEEccCcChhHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMN  221 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g---------~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D  221 (259)
                      +.+|||.|||+|.++..++.+.         ..+++|+|+++.++..++.++...+...+..++.|
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d   97 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFN   97 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecc
Confidence            5689999999999999888752         13789999999999999998876652234444444

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.93  E-value=0.0015  Score=53.71  Aligned_cols=52  Identities=12%  Similarity=0.245  Sum_probs=39.6

Q ss_pred             EEEeCCHHHHHHHHHHhHhcC---CcceEEEEecccCCCc---ceeEEEecccCcccc
Q 025035          191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVMNISVQIL---TYFICKSERNEHYTF  242 (259)
Q Consensus       191 ~giD~S~~~i~~a~~~~~~~~---l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~~~  242 (259)
                      +|+|+|+.|++.|+++.+..+   ..+++|+++|+.++++   .||++.+....|...
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~   58 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV   58 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC
Confidence            589999999999988765322   2469999999999776   689777766555433

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.92  E-value=0.0024  Score=53.07  Aligned_cols=68  Identities=21%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--------cceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--------LTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--------~~fdvv~  233 (259)
                      .+..||++|.|+|-++..+.++|.  ..++++++|++......++..     .++++.+|+..+.        ..||.+.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~~~l~e~~gq~~D~vi  122 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLRTTLGEHKGQFFDSVI  122 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHHHHHhhcCCCeeeeEE
Confidence            567999999999999999999964  489999999999888877543     4668888887754        1566555


Q ss_pred             ecc
Q 025035          234 SER  236 (259)
Q Consensus       234 ~~v  236 (259)
                      +.+
T Consensus       123 S~l  125 (194)
T COG3963         123 SGL  125 (194)
T ss_pred             ecc
Confidence            544

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.90  E-value=0.0091  Score=54.76  Aligned_cols=62  Identities=18%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g-~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~  224 (259)
                      .++..|+|+|||+|.-+..|.+.    + ....+++|+|..+++.+.+++....++.  +.-+++|..+
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence            34668999999999976655543    1 2379999999999999999887444444  4558888866

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.90  E-value=0.0031  Score=54.17  Aligned_cols=63  Identities=17%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCC--cEEEEeCCHHHHHHHHHHhHhcC----------CcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG----------FSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~--~V~giD~S~~~i~~a~~~~~~~~----------l~~i~~i~~D~~~~  225 (259)
                      .++.+.||+|+|+|+++..++.. |..  .++|||.-++.++.+++++.+.-          ..++.++++|....
T Consensus        81 ~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g  156 (237)
T KOG1661|consen   81 QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG  156 (237)
T ss_pred             ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence            57899999999999999888865 322  45999999999999999886542          12578888888774

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=96.89  E-value=0.0049  Score=54.36  Aligned_cols=74  Identities=15%  Similarity=0.049  Sum_probs=53.5

Q ss_pred             hccCCCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEE
Q 025035          159 NDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICK  233 (259)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~  233 (259)
                      +.....+.+|+|||||-=-+++.+.... ...++|+|++..+++.........+. +.+....|+...+.  ..|+.+
T Consensus       100 f~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~DlaL  176 (251)
T PF07091_consen  100 FGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLAL  176 (251)
T ss_dssp             CCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEEE
T ss_pred             HhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchhh
Confidence            3344557899999999988888777662 34999999999999999999888886 78888888887533  556544

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=96.82  E-value=0.0022  Score=55.45  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEeccc-Cc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERN-EH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~-~h  239 (259)
                      ...++||+|+|-|+.+..+.-.-+.+|-.+|+++..++.|++.+...+..-.++.+.-+.+..   ..||+|+.... -|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            357999999999999987766557799999999999999998765422223677887777632   38998777664 34


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      .+.
T Consensus       135 LTD  137 (218)
T PF05891_consen  135 LTD  137 (218)
T ss_dssp             S-H
T ss_pred             CCH
Confidence            443

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.81  E-value=0.0026  Score=55.30  Aligned_cols=64  Identities=16%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV  224 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~  224 (259)
                      +...++++||||.=+|.-++.+|..  .-.+|+++|+++...+.+.+..+..|+.+ |+++++.+.+
T Consensus        70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~e  136 (237)
T KOG1663|consen   70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALE  136 (237)
T ss_pred             HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhh
Confidence            3357889999999999999988887  22389999999999999999999899865 9999998877

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.78  E-value=0.004  Score=56.11  Aligned_cols=73  Identities=12%  Similarity=0.047  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----c-ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----L-TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~-~fdvv~~~  235 (259)
                      .++.+|||+++|.|.-+..++..  +...|++.|+++.-+...++++++.|+.++..++.|..+..    . .||.|+.+
T Consensus        84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~VlvD  163 (283)
T PF01189_consen   84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLVD  163 (283)
T ss_dssp             TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred             cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhcC
Confidence            56789999999999999888887  24589999999999999999999999988888888888752    1 47765543

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=96.77  E-value=0.004  Score=55.16  Aligned_cols=64  Identities=17%  Similarity=0.297  Sum_probs=45.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~  234 (259)
                      ...++||||.|.|..+..++.. +.+|++.|.|+.|....++    .|.. + .-..|+.+....||+|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~~-v-l~~~~w~~~~~~fDvIsc  157 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGFT-V-LDIDDWQQTDFKFDVISC  157 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCCe-E-EehhhhhccCCceEEEee
Confidence            4578999999999999999987 6799999999999655554    4442 1 112334444557885443

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.74  E-value=0.0026  Score=60.02  Aligned_cols=59  Identities=29%  Similarity=0.434  Sum_probs=50.8

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      -.|||||+|+|.++...++.|...|++++.-..|.+.|++...++|.+ +|+.|.-.-++
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            368999999999999999988889999999999999999999999886 48777644433

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.70  E-value=0.0017  Score=55.64  Aligned_cols=79  Identities=13%  Similarity=0.048  Sum_probs=56.1

Q ss_pred             EEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC-----------CcceeEEE
Q 025035          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ-----------ILTYFICK  233 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-----------~~~fdvv~  233 (259)
                      +|||||||+|..+.+++++ +.-.-.-.|+.+..+...+......+++| ..-+..|+...           ...||.|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999998 33366688999888777777777777655 34455666553           12678766


Q ss_pred             ecccCcccccee
Q 025035          234 SERNEHYTFDLY  245 (259)
Q Consensus       234 ~~v~~h~~~D~i  245 (259)
                      +.-+.|+..--.
T Consensus       108 ~~N~lHI~p~~~  119 (204)
T PF06080_consen  108 CINMLHISPWSA  119 (204)
T ss_pred             ehhHHHhcCHHH
Confidence            666667655333

The function of this family is unknown.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.67  E-value=0.01  Score=44.73  Aligned_cols=66  Identities=32%  Similarity=0.468  Sum_probs=43.4

Q ss_pred             EEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CCc----ceeEEEe
Q 025035          168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QIL----TYFICKS  234 (259)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~~----~fdvv~~  234 (259)
                      +||+|||+|... .+.....  ..++|+|+++.++..++......+...+.++..+...  .++    .||++..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVIS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEee
Confidence            999999999976 3333322  2799999999999996655433221116788888765  332    3666533

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.57  E-value=0.0091  Score=54.37  Aligned_cols=62  Identities=19%  Similarity=0.162  Sum_probs=52.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++.++|.-||.|..+..+++. +..+|+|+|.++.+++.++++++..+ .++++++++..++
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l   81 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANF   81 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHH
Confidence            35679999999999999999987 34699999999999999999886553 3799999988874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PRK00536 speE spermidine synthase; Provisional

Probab=96.57  E-value=0.0093  Score=53.17  Aligned_cols=72  Identities=14%  Similarity=-0.081  Sum_probs=52.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC-CcceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ-ILTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~-~~~fdvv~~~v  236 (259)
                      ..+++||-||.|.|..++.+++... +|+.||+.+.+++.+++.+...  ++  ++++++.. +.+. ...||+|..+.
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence            3568999999999999999999964 9999999999999999955432  12  34665542 2221 23677666553

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.48  E-value=0.021  Score=51.01  Aligned_cols=75  Identities=15%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-----ceeEEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-----TYFICK  233 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-----~fdvv~  233 (259)
                      ..++.+||+-|+|+|.++.++++.  +-.+++.+|+-+.-.+.|++..+..+++ ++++++.|+-..-+     .+|.|+
T Consensus       103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF  182 (314)
T KOG2915|consen  103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF  182 (314)
T ss_pred             CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence            367899999999999999999997  3349999999999999999999999886 59999999887433     455555


Q ss_pred             ecc
Q 025035          234 SER  236 (259)
Q Consensus       234 ~~v  236 (259)
                      .++
T Consensus       183 LDl  185 (314)
T KOG2915|consen  183 LDL  185 (314)
T ss_pred             EcC
Confidence            444

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.021  Score=53.12  Aligned_cols=68  Identities=15%  Similarity=0.008  Sum_probs=56.4

Q ss_pred             hhccCCCCCEEEEEccCcChhHHHHHhcCC---CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~---~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+....++.+|||++++.|.=+..+++...   ..|+++|.++.-++..++++++.|+.++..++.|....
T Consensus       150 ~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~  220 (355)
T COG0144         150 LVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL  220 (355)
T ss_pred             HHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence            333446789999999999999888888732   24799999999999999999999998888888887653

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.19  E-value=0.017  Score=49.56  Aligned_cols=65  Identities=20%  Similarity=0.186  Sum_probs=49.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----------ce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----------TY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----------~f  229 (259)
                      .++..|+|||+-.|.+++.+++. +. ..|+|+|+-+-           ..+.++.++++|++....           .+
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence            46799999999999999999988 32 25999999882           123469999999998432           35


Q ss_pred             eEEEecccC
Q 025035          230 FICKSERNE  238 (259)
Q Consensus       230 dvv~~~v~~  238 (259)
                      |+|.+++.-
T Consensus       113 DvV~sD~ap  121 (205)
T COG0293         113 DVVLSDMAP  121 (205)
T ss_pred             ceEEecCCC
Confidence            777766654

>PRK11524 putative methyltransferase; Provisional

Probab=96.17  E-value=0.012  Score=52.86  Aligned_cols=55  Identities=13%  Similarity=-0.051  Sum_probs=45.4

Q ss_pred             chHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh
Q 025035          154 EPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (259)
Q Consensus       154 ~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~  209 (259)
                      .+.+++... .++..|||.-||+|..++...+.|. +.+|+|++++.++.|++++..
T Consensus       197 L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        197 LLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            334444333 4789999999999999998888876 999999999999999998753

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.10  E-value=0.0017  Score=56.65  Aligned_cols=81  Identities=19%  Similarity=0.130  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc-----ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL-----TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~-----~fdvv~~~  235 (259)
                      .++.+|||.+.|-|+.++..+++|..+|+.++.++..|++|+-|-=..++.  .|+.+.+|+.+.-.     +||+    
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDa----  208 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDA----  208 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccce----
Confidence            458899999999999999999999889999999999999998764222332  58999999988433     4664    


Q ss_pred             ccCccccceeeee
Q 025035          236 RNEHYTFDLYQIG  248 (259)
Q Consensus       236 v~~h~~~D~i~~~  248 (259)
                       +.|-+.-+-..|
T Consensus       209 -IiHDPPRfS~Ag  220 (287)
T COG2521         209 -IIHDPPRFSLAG  220 (287)
T ss_pred             -EeeCCCccchhh
Confidence             345555444433

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.0069  Score=49.41  Aligned_cols=79  Identities=15%  Similarity=0.199  Sum_probs=60.0

Q ss_pred             hccccchHHhhccC--CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035          149 EDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ  225 (259)
Q Consensus       149 ~~~~~~~~~~l~~~--~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~  225 (259)
                      ....+.+...+...  .+.++.+|+|+|.|++.+..++.|....+|++.++-.+.+++-++-+.|.. ...|...|+-+.
T Consensus        55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~  134 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV  134 (199)
T ss_pred             CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence            34444444444433  344799999999999999999998668999999999999999988887764 477777777664


Q ss_pred             Cc
Q 025035          226 IL  227 (259)
Q Consensus       226 ~~  227 (259)
                      ..
T Consensus       135 dl  136 (199)
T KOG4058|consen  135 DL  136 (199)
T ss_pred             cc
Confidence            43

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.03  E-value=0.0098  Score=50.38  Aligned_cols=42  Identities=21%  Similarity=0.228  Sum_probs=35.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++..|||.-||+|..+....+.|. +.+|+|+++..++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            4688999999999999999988876 89999999999999875

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.00  E-value=0.0057  Score=47.08  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=28.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE  197 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~  197 (259)
                      +....+|||||+|.+..-|.+.|+ .-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            356799999999999999999998 899999644

; GO: 0008168 methyltransferase activity

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.88  E-value=0.0066  Score=50.51  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=30.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSED  198 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~  198 (259)
                      .+.+|||+||++|.++..+.+++  ..+|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            35899999999999999999997  459999999885

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.82  E-value=0.033  Score=48.19  Aligned_cols=61  Identities=16%  Similarity=0.120  Sum_probs=53.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      .+.++.||||=.|++..+|.+.+ .+.+++.|++++.++.|.++.++.++. +|+..++|...
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~   78 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLA   78 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcc
Confidence            35669999999999999999985 459999999999999999999998875 48888888755

>PRK13699 putative methylase; Provisional

Probab=95.76  E-value=0.028  Score=49.06  Aligned_cols=56  Identities=16%  Similarity=0.070  Sum_probs=45.4

Q ss_pred             chHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          154 EPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       154 ~~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      .+..++... .++..|||.-||+|..++...+.|. +.+|+|+++...+.+.++++..
T Consensus       152 l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        152 SLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            333444332 4688999999999999999888876 9999999999999999987653

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.70  E-value=0.016  Score=54.12  Aligned_cols=89  Identities=20%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             chHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ce
Q 025035          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TY  229 (259)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~f  229 (259)
                      .+..+.....++..++|+|||-|.....++..+...++|+++++..+..+.......++.+ ..++.+|+.+.++   .|
T Consensus       100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~f  179 (364)
T KOG1269|consen  100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTF  179 (364)
T ss_pred             chHHHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCcccc
Confidence            3344444455677899999999999999999877799999999999999988877777654 5668888888765   66


Q ss_pred             eEE-EecccCcccc
Q 025035          230 FIC-KSERNEHYTF  242 (259)
Q Consensus       230 dvv-~~~v~~h~~~  242 (259)
                      |.+ +.+...|.+.
T Consensus       180 d~v~~ld~~~~~~~  193 (364)
T KOG1269|consen  180 DGVRFLEVVCHAPD  193 (364)
T ss_pred             CcEEEEeecccCCc
Confidence            643 3344445443

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.43  E-value=0.021  Score=49.02  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=46.7

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC-------CcceEEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVMNISV  224 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~-------l~~i~~i~~D~~~  224 (259)
                      .-.+.|||||-|.+++.|+.. +-.-+.|++|--...++.++++....       +.||..+..+...
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk  128 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMK  128 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchh
Confidence            356899999999999999988 44478899999888888888876554       4456666665544

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=95.39  E-value=0.051  Score=50.53  Aligned_cols=73  Identities=25%  Similarity=0.278  Sum_probs=56.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHh--HhcC---C--cceEEEEecccCCCc----ceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA--NRDG---F--SCIKFLVMNISVQIL----TYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~--~~~~---l--~~i~~i~~D~~~~~~----~fdv  231 (259)
                      ...+||-+|.|.|..++.+.+.+ ..+|+-+|..+.||+.++++.  ...+   +  ++++.+..|+.+...    .||+
T Consensus       289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~  368 (508)
T COG4262         289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDV  368 (508)
T ss_pred             ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccE
Confidence            35789999999999999999995 779999999999999999543  2221   2  368999999988432    6665


Q ss_pred             EEecc
Q 025035          232 CKSER  236 (259)
Q Consensus       232 v~~~v  236 (259)
                      ++-+.
T Consensus       369 vIVDl  373 (508)
T COG4262         369 VIVDL  373 (508)
T ss_pred             EEEeC
Confidence            54443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.36  E-value=0.02  Score=50.16  Aligned_cols=41  Identities=24%  Similarity=0.346  Sum_probs=36.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLA  203 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a  203 (259)
                      .++..+||||+.||.++..+.++|..+|+++|..-..+..-
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k  118 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK  118 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh
Confidence            57899999999999999999999999999999988666543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.35  E-value=0.037  Score=49.53  Aligned_cols=53  Identities=19%  Similarity=0.201  Sum_probs=43.8

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +|+|+.||.|.+...+.+.|+..|.++|+++.+++..+.+...     . .+++|+.+.
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~-----~-~~~~Di~~~   54 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN-----K-LIEGDITKI   54 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC-----C-CccCccccC
Confidence            6999999999999999998987889999999999988887632     1 456676664

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.30  E-value=0.053  Score=48.69  Aligned_cols=70  Identities=26%  Similarity=0.272  Sum_probs=42.2

Q ss_pred             CCEEEEEccCcC-hhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhH-hcCCc-ceEEEEecccCCCc---ceeEEEe
Q 025035          165 SWSVLDIGTGNG-LLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       165 ~~~VLDiGcG~G-~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~-~~~l~-~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      +.+|+=||||.= ..++.++++ + ...|+++|+++.+++.+++..+ ..++. +++|+++|..+...   .||+|+.
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            469999999954 445566654 3 2379999999999999999877 44544 59999999987542   6775443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=94.86  E-value=0.011  Score=52.88  Aligned_cols=70  Identities=17%  Similarity=0.081  Sum_probs=49.7

Q ss_pred             HHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcce-EEEEecccCCCc---ceeE
Q 025035          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVMNISVQIL---TYFI  231 (259)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i-~~i~~D~~~~~~---~fdv  231 (259)
                      ..++.....+..+||+|||+|..+..   .+...++|+|++...+.-+++.       +. ....+|+.+++.   .||.
T Consensus        37 ~qfl~~~~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~d~  106 (293)
T KOG1331|consen   37 RQFLDSQPTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESFDA  106 (293)
T ss_pred             HHHHhccCCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCcccc
Confidence            34444445678999999999987653   2334799999999998888762       33 577788888776   6774


Q ss_pred             EEec
Q 025035          232 CKSE  235 (259)
Q Consensus       232 v~~~  235 (259)
                      +++-
T Consensus       107 ~lsi  110 (293)
T KOG1331|consen  107 ALSI  110 (293)
T ss_pred             chhh
Confidence            4443

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.75  E-value=0.02  Score=51.75  Aligned_cols=63  Identities=10%  Similarity=0.074  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccCcChhHH-HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~-~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~  225 (259)
                      ..+..|.|+-.|-|++++ ++...|.+.|+++|.++.+++..+++++.+++. +...+.+|-...
T Consensus       193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~  257 (351)
T KOG1227|consen  193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP  257 (351)
T ss_pred             cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence            456789999999999999 788889999999999999999999999988764 355556666553

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.61  E-value=0.38  Score=41.93  Aligned_cols=75  Identities=15%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~  234 (259)
                      .++.+||-+|..+|.....++.- | ...|+++++|+...+..-..+++.  +||--+..|+..+..      ..|+++.
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence            46889999999999999999987 4 348999999997766555555544  378889999988533      6677777


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      ++...
T Consensus       150 DVaQp  154 (229)
T PF01269_consen  150 DVAQP  154 (229)
T ss_dssp             E-SST
T ss_pred             cCCCh
Confidence            66543

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.61  E-value=0.12  Score=45.56  Aligned_cols=82  Identities=16%  Similarity=0.224  Sum_probs=53.9

Q ss_pred             CCEEEEEccCcChhHHHHHhc-C--------CCcEEEEeCCHHHHHHHHHHhHhc-----CC-cceEEEEecccCCCcce
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRD-----GF-SCIKFLVMNISVQILTY  229 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g--------~~~V~giD~S~~~i~~a~~~~~~~-----~l-~~i~~i~~D~~~~~~~f  229 (259)
                      +-+|+|+|.|+|.++.-+++. .        ..+++.||+|+.+.+.-++++...     .. .+|.| ..++.+.+..-
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p~~~   97 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVPFPG   97 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS-CCE
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhcccCCE
Confidence            368999999999999888875 1        237999999999988888877542     12 25777 44555554444


Q ss_pred             eEEEecccCccccceeee
Q 025035          230 FICKSERNEHYTFDLYQI  247 (259)
Q Consensus       230 dvv~~~v~~h~~~D~i~~  247 (259)
                      .+++.+++.-.+.|.+..
T Consensus        98 ~iiaNE~~DAlP~~~~~~  115 (252)
T PF02636_consen   98 FIIANELFDALPVDRFRK  115 (252)
T ss_dssp             EEEEESSGGGS--EEEEE
T ss_pred             EEEEeeehhcCceeEEEE
Confidence            566777777666666653

; PDB: 4F3N_A 1ZKD_B.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.51  E-value=0.2  Score=44.00  Aligned_cols=72  Identities=21%  Similarity=0.114  Sum_probs=44.5

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH---hHhcC-C-----cceEEEEecccCC----CcceeEE
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL---ANRDG-F-----SCIKFLVMNISVQ----ILTYFIC  232 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~---~~~~~-l-----~~i~~i~~D~~~~----~~~fdvv  232 (259)
                      .+|||.-+|-|..++-++..|+ +|+++|-|+.+..+.+.-   +.... .     .+|+++++|..+.    ..+||||
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            3899999999999999998887 899999999776555543   32221 1     3699999998883    2388887


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.+-++
T Consensus       156 Y~DPMF  161 (234)
T PF04445_consen  156 YFDPMF  161 (234)
T ss_dssp             EE--S-
T ss_pred             EECCCC
Confidence            765544

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=94.42  E-value=0.062  Score=46.36  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=31.3

Q ss_pred             hccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe
Q 025035          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      +....++..|-|+|||.+.++..+.+ +. +|+..|.-..               +-..+.+|+.+.|+   ..|++..
T Consensus        67 l~~~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~---------------n~~Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen   67 LKKRPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP---------------NPRVTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             HCTS-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S---------------STTEEES-TTS-S--TT-EEEEEE
T ss_pred             HHhcCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC---------------CCCEEEecCccCcCCCCceeEEEE
Confidence            33344567999999999999976543 33 7999998651               22356788888766   5564433

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.38  E-value=0.084  Score=47.28  Aligned_cols=42  Identities=29%  Similarity=0.379  Sum_probs=36.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .+.+||--|||.|+++..++.+|+ .+.|.|+|-.|+=...-.
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fi   97 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFI   97 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHH
Confidence            457999999999999999999999 999999999997555543

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.37  E-value=0.082  Score=47.40  Aligned_cols=53  Identities=21%  Similarity=0.220  Sum_probs=45.9

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      +++|+-||.|.+...|.+.|+.-|.++|+++.+++.-+.|..       ...++|+.+..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~   54 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEID   54 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCH
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccc
Confidence            699999999999999999998789999999999988888763       67888988864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.24  E-value=0.07  Score=45.55  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=42.5

Q ss_pred             CCCEEEEEccCcCh----hHHHHHhc---CC---CcEEEEeCCHHHHHHHHHHh--------------Hh-----cC---
Q 025035          164 SSWSVLDIGTGNGL----LLQELSKQ---GF---SDLTGVDYSEDAINLAQSLA--------------NR-----DG---  211 (259)
Q Consensus       164 ~~~~VLDiGcG~G~----~~~~la~~---g~---~~V~giD~S~~~i~~a~~~~--------------~~-----~~---  211 (259)
                      +.-+|+..||++|.    +++.+.+.   ..   -+|+|+|+|+.+|+.|++-.              ++     .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            35699999999998    33444441   11   28999999999999998711              00     01   


Q ss_pred             -C-----cceEEEEecccC-CCc--ceeEEEe-cccC
Q 025035          212 -F-----SCIKFLVMNISV-QIL--TYFICKS-ERNE  238 (259)
Q Consensus       212 -l-----~~i~~i~~D~~~-~~~--~fdvv~~-~v~~  238 (259)
                       +     ..|+|.+.|+.+ .+.  .||+|++ +++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlI  147 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLI  147 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGG
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEE
Confidence             1     258999999988 222  7885544 4433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=94.09  E-value=0.16  Score=45.34  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=39.7

Q ss_pred             CEEEEEccCc--ChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          166 WSVLDIGTGN--GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       166 ~~VLDiGcG~--G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ...||||||-  -.....++++  +-++|+-+|+.+..+..++..+....-....++++|+.+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP  133 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence            5799999993  3345566665  4569999999999999999987655322489999999983

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.04  E-value=0.071  Score=46.15  Aligned_cols=45  Identities=27%  Similarity=0.388  Sum_probs=33.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLAN  208 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~  208 (259)
                      .+-++.|-+||.|.++--+.-.   ....|+|-|+++.+++.|++|+.
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            3568999999999986554432   23489999999999999999865

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=93.84  E-value=0.14  Score=45.66  Aligned_cols=54  Identities=9%  Similarity=0.132  Sum_probs=38.2

Q ss_pred             hccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeE
Q 025035          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFI  231 (259)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdv  231 (259)
                      +.....+..|-|+|||.+.++.   .. ..+|+.+|+-.               .+-+++.+|+.+.|.   +.||
T Consensus       175 ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~svDv  231 (325)
T KOG3045|consen  175 IKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESVDV  231 (325)
T ss_pred             HHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcccE
Confidence            3333567899999999999887   23 33899999765               145667888888765   4553

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=93.04  E-value=0.2  Score=46.13  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      -...+|+|.|.|+.+..+... +.+|-++++....+-.++.... .|   |+.+-+|..+....-|+++...+.|.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq~~P~~daI~mkWiLhd  248 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQDTPKGDAIWMKWILHD  248 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-CC---cceecccccccCCCcCeEEEEeeccc
Confidence            368999999999999999985 6689999999888777776654 33   67777777776555556665555543

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=92.96  E-value=0.59  Score=41.15  Aligned_cols=71  Identities=15%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----~fdvv~~~  235 (259)
                      ..+++||-+|=.-- .++.++-. ...+|+.+|+.+..++..++.+++.|+ +|+.++.|+.+...     .||+++.+
T Consensus        43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl-~i~~~~~DlR~~LP~~~~~~fD~f~TD  119 (243)
T PF01861_consen   43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL-PIEAVHYDLRDPLPEELRGKFDVFFTD  119 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE-
T ss_pred             ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-ceEEEEecccccCCHHHhcCCCEEEeC
Confidence            46899999985442 34444432 345999999999999999999999998 49999999999422     78866544

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=92.90  E-value=0.32  Score=45.70  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=52.5

Q ss_pred             CCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC----cceeEE
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI----LTYFIC  232 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~----~~fdvv  232 (259)
                      +-+|||.=+|+|.=++.++..  +..+|+.-|+|+.+++..++|++.+++..  ++..+.|+..+.    ..||+|
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~I  125 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVI  125 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEE
Confidence            458999999999999999887  55699999999999999999999999865  788888887742    256654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=92.79  E-value=0.023  Score=48.90  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=36.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~  205 (259)
                      .+.++||+|.|.|.++..++.. +.+|.+.+.|..|+...++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhh
Confidence            4579999999999999999887 6699999999999988776

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=92.67  E-value=0.17  Score=43.00  Aligned_cols=34  Identities=26%  Similarity=0.214  Sum_probs=28.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYS  196 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S  196 (259)
                      .++.+|||+||..|.+++-..++  +...|.|||+-
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            57899999999999999987776  34479999963

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.64  E-value=0.25  Score=43.37  Aligned_cols=77  Identities=17%  Similarity=0.273  Sum_probs=51.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc-CCcc-eEEEEecccCC--------CcceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSC-IKFLVMNISVQ--------ILTYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~-~l~~-i~~i~~D~~~~--------~~~fdv  231 (259)
                      ++.++||||.|.-.+=-.+--+  |. +.+|.|+++.++..|+.....+ ++.+ |+.....-..-        ...||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            5678999999987654444333  66 8999999999999999998876 5543 66554322221        115666


Q ss_pred             EEecccCccc
Q 025035          232 CKSERNEHYT  241 (259)
Q Consensus       232 v~~~v~~h~~  241 (259)
                      +.++--+|..
T Consensus       157 tlCNPPFh~s  166 (292)
T COG3129         157 TLCNPPFHDS  166 (292)
T ss_pred             EecCCCcchh
Confidence            6555555544

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=92.49  E-value=0.11  Score=49.19  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=54.7

Q ss_pred             ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccC
Q 025035          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISV  224 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~  224 (259)
                      ....++..|.|+.||.|-+++.+++.++ +|++-|.++.+++..+.+++.+.+.  +|+...+|+..
T Consensus       245 g~fk~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  245 GLFKPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD  310 (495)
T ss_pred             hccCCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence            3445678899999999999999999986 9999999999999999999887764  37777777655

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=92.48  E-value=0.083  Score=47.39  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN  201 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~  201 (259)
                      ..+++|||+|||.|...+.....|...++..|+|...++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            468999999999999999998888669999999998875

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=92.41  E-value=0.26  Score=44.99  Aligned_cols=62  Identities=18%  Similarity=0.145  Sum_probs=48.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++..||.--|.|..+..+++. +..+|+|+|..+.+++.+++++...+ .++.++++++.++
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l   81 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNL   81 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGH
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHH
Confidence            45779999999999999999987 44699999999999999998876553 3799999988774

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=91.95  E-value=0.79  Score=39.46  Aligned_cols=73  Identities=14%  Similarity=0.145  Sum_probs=54.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~~  235 (259)
                      .++.+||=+|..+|.....++.- |...++++++|+.+....-..+++.  .||--+.+|+..+..      ..|+++.+
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D  152 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQD  152 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEEe
Confidence            46899999999999999999987 5457999999998766665555443  378888899887532      44555554


Q ss_pred             cc
Q 025035          236 RN  237 (259)
Q Consensus       236 v~  237 (259)
                      +.
T Consensus       153 VA  154 (231)
T COG1889         153 VA  154 (231)
T ss_pred             cC
Confidence            44

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.94  E-value=0.39  Score=44.95  Aligned_cols=44  Identities=27%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~  206 (259)
                      ..-..|+|+|.|.|.++..++-...-.|.+||-|+...+.|++.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            34578999999999999999877334999999999888877764

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=91.56  E-value=0.46  Score=44.26  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=50.3

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ..+|||.=||+|.=++.++.. +..+|+.=|+|+.+++.+++|...+...+...+..|+..
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~  113 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANA  113 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHH
Confidence            679999999999999999887 444899999999999999999998844456666677655

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=90.95  E-value=1.4  Score=40.02  Aligned_cols=62  Identities=16%  Similarity=0.135  Sum_probs=53.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++..||.--|.|..+..+.++.  ..+++|+|..+.+|+.|+++....+ .++++++..+.++
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l   85 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANL   85 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHH
Confidence            456899999999999999999983  3479999999999999999988766 4799999887763

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=90.79  E-value=0.13  Score=38.69  Aligned_cols=67  Identities=22%  Similarity=0.165  Sum_probs=20.9

Q ss_pred             EEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----C-cceeEEEecc
Q 025035          169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----I-LTYFICKSER  236 (259)
Q Consensus       169 LDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~-~~fdvv~~~v  236 (259)
                      ||||+..|..+..+++.    +..+++++|..+. .+..++..++.++. ++++++++..+.    + .++|+++...
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999988887764    2137999999995 33344444434443 599999998763    1 3666665544

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.74  E-value=0.5  Score=43.37  Aligned_cols=43  Identities=33%  Similarity=0.437  Sum_probs=37.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..+.+||-+|+|+ |..+...++. |.++|+.+|.++.-++.|++
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            5688999999994 7777777776 88899999999999999998

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=90.69  E-value=0.46  Score=43.00  Aligned_cols=42  Identities=17%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             CCEEEEEccCcCh----hHHHHHhc-C----CCcEEEEeCCHHHHHHHHHH
Q 025035          165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~V~giD~S~~~i~~a~~~  206 (259)
                      .-+|+..||++|-    +++.+.+. +    .-+|+|+|+|+.+|+.|++-
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G  166 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG  166 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence            3699999999997    33333332 1    12799999999999999984

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.46  E-value=0.59  Score=36.53  Aligned_cols=52  Identities=27%  Similarity=0.466  Sum_probs=40.0

Q ss_pred             CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      ..++|.++|-|-=. .+..|+++|+ .|+++|+++.       ++   + ..++|++.|++++..
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~   65 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNI   65 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccH
Confidence            35699999988654 5777888897 9999999986       11   1 258999999999644

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=90.41  E-value=0.43  Score=37.88  Aligned_cols=59  Identities=22%  Similarity=0.323  Sum_probs=33.9

Q ss_pred             CCCEEEEEccCcCh-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEEe
Q 025035          164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~~  234 (259)
                      ...+|+++|-|.=. .+..|.++|+ .|+++|+.+.       ++. .   .+.+++.|+.++..    ..+++.+
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~-~---g~~~v~DDif~P~l~iY~~a~lIYS   76 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP-E---GVNFVVDDIFNPNLEIYEGADLIYS   76 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc-c---CcceeeecccCCCHHHhcCCcEEEE
Confidence            35699999999654 5777778887 9999999996       111 2   57899999999654    4555554

; PDB: 2K4M_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=89.66  E-value=0.57  Score=42.86  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL  202 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~  202 (259)
                      ..+||--|||.|+++..|+..|+ .+-|=++|--|+=.
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~  187 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLIC  187 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHH
Confidence            56899999999999999999998 78888988877643

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=89.60  E-value=0.48  Score=43.24  Aligned_cols=52  Identities=15%  Similarity=0.128  Sum_probs=41.7

Q ss_pred             EEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       168 VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      |+|+.||.|.+...|.+.|+.-+.++|+++.+++.-+.|..     + .++++|+.+.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~   52 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKI   52 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhh
Confidence            68999999999999998898667789999999998888753     2 3345677664

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=89.45  E-value=0.55  Score=42.06  Aligned_cols=41  Identities=12%  Similarity=0.083  Sum_probs=31.9

Q ss_pred             CCEEEEEccCcCh----hHHHHHhcC------CCcEEEEeCCHHHHHHHHH
Q 025035          165 SWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       165 ~~~VLDiGcG~G~----~~~~la~~g------~~~V~giD~S~~~i~~a~~  205 (259)
                      .-+|+-.||++|-    +++.+.+.+      .-+|+|+|+|..+|+.|+.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            5799999999997    334444432      1289999999999999986

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.38  E-value=0.4  Score=42.67  Aligned_cols=46  Identities=22%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~  209 (259)
                      ++.++||||||+-.+...-+..-+.+|+..|+++..++..++-++.
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~  101 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK  101 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence            4679999999997665444444466999999999998877775543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=89.14  E-value=2.2  Score=41.47  Aligned_cols=61  Identities=16%  Similarity=0.093  Sum_probs=46.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g----~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      +..+|+|..||+|.+.....+. +    ...++|.|+++....+|+-+.-.+|+. ++....+|-..
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~  252 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLS  252 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccccc
Confidence            4569999999999988776665 2    246899999999999999998888775 34555555444

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=88.99  E-value=0.42  Score=44.20  Aligned_cols=67  Identities=21%  Similarity=0.150  Sum_probs=54.2

Q ss_pred             ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHH-------HHHHhHhcCCc-c-eEEEEecccCCCc
Q 025035          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL-------AQSLANRDGFS-C-IKFLVMNISVQIL  227 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~-------a~~~~~~~~l~-~-i~~i~~D~~~~~~  227 (259)
                      ....+|.-|+|---|||.+++..+..|. .|+|.||.-.++..       .+.|+++.|.. . +..+.+|..+.+.
T Consensus       204 Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~  279 (421)
T KOG2671|consen  204 AMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPL  279 (421)
T ss_pred             hccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcch
Confidence            3446789999999999999999999987 99999999888873       35577777743 3 7788889888654

>PRK08339 short chain dehydrogenase; Provisional

Probab=88.92  E-value=2.6  Score=36.80  Aligned_cols=62  Identities=15%  Similarity=0.299  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+......-.++.++.+|+.+.
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR   70 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence            357788988887665   4556666787 8999999987776666554332113688889999874

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=88.80  E-value=0.76  Score=39.82  Aligned_cols=67  Identities=15%  Similarity=0.174  Sum_probs=38.6

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-CcceeEEEecccCccccc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-ILTYFICKSERNEHYTFD  243 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~~fdvv~~~v~~h~~~D  243 (259)
                      ..++|||||=+......-.  +.-.|+.||+++.          ..++....|....+... ...||+|...+++.+..+
T Consensus        52 ~lrlLEVGals~~N~~s~~--~~fdvt~IDLns~----------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~  119 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACSTS--GWFDVTRIDLNSQ----------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD  119 (219)
T ss_pred             cceEEeecccCCCCccccc--CceeeEEeecCCC----------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence            3689999998776655432  3337999999871          12222233333333221 227887766666555444

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.19  E-value=1.5  Score=41.20  Aligned_cols=46  Identities=17%  Similarity=0.039  Sum_probs=32.9

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA  207 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~  207 (259)
                      .+.++.+||-|.+|..+.+-. +..+.++|++||+|+..+.+.+-+.
T Consensus        32 ~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   32 NIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             CCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence            445788999996555555554 5555669999999998877766544

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.15  E-value=1.4  Score=40.47  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=45.7

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++|+-||.|.+...+...|+.-+.++|+.+.+++.-+.+...     -.++..|+.+.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~   58 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKEL   58 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhc
Confidence            458999999999999999999987888999999999888887642     45566666653

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=88.13  E-value=2  Score=38.86  Aligned_cols=70  Identities=19%  Similarity=0.305  Sum_probs=56.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-----ceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-----TYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-----~fdvv~  233 (259)
                      +.++.|+-+| ---..+++++-.| ..+|..+|+.+..|+...+.++..|+.||+.++.|+.++..     .||+..
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi  226 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI  226 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence            5678899999 4445555555543 34999999999999999999999999889999999999643     788654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=87.72  E-value=2.6  Score=39.27  Aligned_cols=48  Identities=13%  Similarity=0.171  Sum_probs=38.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHhHhcC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDG  211 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g---------~~~V~giD~S~~~i~~a~~~~~~~~  211 (259)
                      .+-.+++||.|.|.++.-+++..         ..++..|++|+...+.-+++++...
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            35689999999999988777641         3489999999999888888776543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=87.58  E-value=0.35  Score=46.71  Aligned_cols=39  Identities=21%  Similarity=0.265  Sum_probs=27.2

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEE---eCCHHHHHHHHH
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQS  205 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~gi---D~S~~~i~~a~~  205 (259)
                      ..+||+|||+|.++.+|..++. .+..+   |..+..++.|.+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfale  160 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALE  160 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhh
Confidence            4789999999999999999865 22222   334445555554

; GO: 0008168 methyltransferase activity

>PRK05867 short chain dehydrogenase; Provisional

Probab=87.42  E-value=3.3  Score=35.65  Aligned_cols=60  Identities=13%  Similarity=0.144  Sum_probs=43.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++.|.   ++..|+++|. +|++++.++..++...+..+..+ .++.++.+|+.+.
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~   70 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQH   70 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence            57889999986654   4555666677 89999999887776666555444 3678888898773

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=87.27  E-value=2.3  Score=38.58  Aligned_cols=60  Identities=27%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++.||==|.|.|.   ++..++++|+ +++..|+++...+...+..++.|  +++...+|+.+.
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~   98 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDR   98 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCH
Confidence            458899999999886   6888888887 99999999988888888777665  789999999884

>PRK10458 DNA cytosine methylase; Provisional

Probab=87.23  E-value=1.4  Score=42.69  Aligned_cols=60  Identities=12%  Similarity=0.103  Sum_probs=45.6

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ..+++|+-||.|.+...+-..|..-|.++|+.+.+.+.-+.|....  +....+.+|+.+..
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~--p~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD--PATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC--CccceeccChhhCc
Confidence            4589999999999999998888877889999999888877764211  13345566776653

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=87.15  E-value=2.2  Score=37.28  Aligned_cols=61  Identities=13%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++++||.||-|-|.+.-++-++...+=+.|+..+..++.++...-+.. .++..+.+-+.+
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeD  160 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWED  160 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHh
Confidence            5689999999999999999988866678889999999999998764433 267777776665

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=86.89  E-value=1.7  Score=41.35  Aligned_cols=63  Identities=11%  Similarity=0.027  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++-+|||+++-.|.-+.++|..  +...|++.|.+..-+...+.++.+.|+.+......|..+.
T Consensus       240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef  304 (460)
T KOG1122|consen  240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREF  304 (460)
T ss_pred             CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccc
Confidence            57889999999999987777765  3337999999999999999999999998877788888754

>PRK07904 short chain dehydrogenase; Provisional

Probab=86.54  E-value=3.4  Score=35.92  Aligned_cols=62  Identities=11%  Similarity=0.155  Sum_probs=39.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHH-HHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~-i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..++++|..+|+.++.++.. ++.+.+..+..+..+++++.+|+.+.
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~   72 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT   72 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence            46789988886544   2333444543489999987653 55554444444433689999998764

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=86.42  E-value=0.98  Score=41.81  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      ..++.+|+-+|+| .|..++.+++. | .+|+++|.|+.-++.|++.
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh
Confidence            3568899999888 45578888884 7 5999999999999999885

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=86.34  E-value=0.82  Score=39.35  Aligned_cols=60  Identities=15%  Similarity=0.137  Sum_probs=34.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-----g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~  225 (259)
                      ++..|+++|.-.|.-++.+|..     +..+|+|||+.-...+....  +...+ ++|+++++|..+.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~--e~hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAI--ESHPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GG--GG----TTEEEEES-SSST
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHH--hhccccCceEEEECCCCCH
Confidence            5789999999999988887753     34599999995433222111  11222 3799999998873

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PRK07890 short chain dehydrogenase; Provisional

Probab=86.13  E-value=4.8  Score=34.52  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=41.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.....+ .++.++..|+.+.
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   66 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDE   66 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCH
Confidence            46789988865544   3444555687 89999999877666655554434 2688899998763

>PRK07035 short chain dehydrogenase; Provisional

Probab=86.02  E-value=4.6  Score=34.61  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=42.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.+...++...+.....+ .++.++..|+.+.
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   69 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAG-GKAEALACHIGEM   69 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCH
Confidence            46788989877664   3455556676 89999999877766655554444 2577888888763

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=85.99  E-value=4.8  Score=34.56  Aligned_cols=61  Identities=18%  Similarity=0.227  Sum_probs=41.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+..+..+. ++.++.+|+.+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~   72 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADE   72 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence            357889988865443   2333445576 899999998777666555554442 588899998873

>PRK05876 short chain dehydrogenase; Provisional

Probab=85.71  E-value=4.5  Score=35.67  Aligned_cols=60  Identities=13%  Similarity=0.226  Sum_probs=41.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|+++|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++..|+.+.
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~   67 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHR   67 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCH
Confidence            46788888876554   3445555677 899999998777666555544443 578888998773

>PRK06172 short chain dehydrogenase; Provisional

Probab=85.68  E-value=5  Score=34.41  Aligned_cols=60  Identities=15%  Similarity=0.204  Sum_probs=41.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+..+..+ .++.++.+|+.+.
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   68 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRD   68 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence            46789999875544   3344555576 89999999877666655554444 2688899999873

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=85.33  E-value=1.6  Score=40.33  Aligned_cols=44  Identities=34%  Similarity=0.437  Sum_probs=36.9

Q ss_pred             CCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHh
Q 025035          164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA  207 (259)
Q Consensus       164 ~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~  207 (259)
                      ++.+|+-+|||+ |.++..+++. |.++|+++|.++.-++.|++..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            345999999994 7777777776 8789999999999999998843

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.90  E-value=5.5  Score=34.35  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ -.++.++.+|+.+.
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   70 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA   70 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence            46789988876554   3455556677 89999999887776666554421 12588899998874

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=84.72  E-value=2  Score=39.97  Aligned_cols=44  Identities=23%  Similarity=0.302  Sum_probs=36.9

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||.+|||. |..+..+++. |..+|++++.++..++.+++.
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            4678999999988 8888888887 554699999999998888874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK06125 short chain dehydrogenase; Provisional

Probab=84.55  E-value=6.2  Score=34.02  Aligned_cols=60  Identities=17%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++++|-.|++.|.   ++..|+++|. +|++++.++..++...+.+....-.++.++..|+.+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~   68 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS   68 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence            46789999976553   2344555677 999999998777666555443322357888888876

>PRK07677 short chain dehydrogenase; Provisional

Probab=84.43  E-value=5.8  Score=34.05  Aligned_cols=57  Identities=11%  Similarity=0.176  Sum_probs=40.0

Q ss_pred             CEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       166 ~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +++|-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~   61 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN   61 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence            578888886654   3445556677 89999998877666655554433 368889999876

>PRK08703 short chain dehydrogenase; Provisional

Probab=84.22  E-value=6.2  Score=33.54  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++++||-.||+.|.   ++..|+++|. +|++++.++..++...+.+...+...+.++..|+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~   67 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS   67 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence            46789999965443   3344455576 899999998776666555444332345666777653

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=84.17  E-value=4.6  Score=32.09  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=40.8

Q ss_pred             EEEEEccCcCh---hHHHHHhcCCCcEEEEeCC--HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       167 ~VLDiGcG~G~---~~~~la~~g~~~V~giD~S--~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +||-.|+++|.   ++..|+++|...|+.+..+  ...++...+.++..+ .++.+++.|+.+.
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~   64 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDP   64 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccc
Confidence            57778877554   4555555666689999998  556666655555555 4799999998873

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=84.06  E-value=6.1  Score=34.03  Aligned_cols=59  Identities=14%  Similarity=0.146  Sum_probs=41.8

Q ss_pred             CCCEEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.| |+|.++..+++    +|. +|+.++-+...++...+.....+. ++.++.+|+.+.
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~   73 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI-DALWIAADVADE   73 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCH
Confidence            467899888 45565555554    476 899999998777766665544432 678899999873

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=83.92  E-value=6.4  Score=34.14  Aligned_cols=60  Identities=13%  Similarity=0.165  Sum_probs=43.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+..+..+. ++.++.+|+.+.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~   71 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDE   71 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCH
Confidence            46789999887655   3455666677 799999998777766666554442 688899999873

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=83.79  E-value=6.5  Score=33.78  Aligned_cols=59  Identities=12%  Similarity=0.142  Sum_probs=41.5

Q ss_pred             CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|+ +|.++..++    ++|. +|++++.++..++...+..+..+. ++.++..|+.+.
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~   71 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDH   71 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCH
Confidence            5788998885 555555544    4576 899999998777666655554442 578888898873

>PRK06194 hypothetical protein; Provisional

Probab=83.76  E-value=5.9  Score=34.70  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=39.1

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|+.+|.+...++...+.....+. ++.++.+|+.+.
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~   67 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDA   67 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCH
Confidence            35788877754433   3334455576 899999987766655554443332 688899998873

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=83.72  E-value=6.8  Score=33.23  Aligned_cols=59  Identities=17%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +++++|-.|++.|.   ++..++++|. +|++++.++..++.+.+.....+ .++.+++.|+.+
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~   65 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTD   65 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCC
Confidence            46789988864443   2233444576 89999999877666655554433 267888888876

>PRK08862 short chain dehydrogenase; Provisional

Probab=83.56  E-value=6  Score=33.89  Aligned_cols=59  Identities=14%  Similarity=0.028  Sum_probs=43.9

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+..+..+. ++.....|+.+
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~   65 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFS   65 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCC
Confidence            46789999999877   5666777787 899999999888777666555443 46666777766

>PRK07478 short chain dehydrogenase; Provisional

Probab=83.14  E-value=7.6  Score=33.31  Aligned_cols=60  Identities=8%  Similarity=0.116  Sum_probs=42.2

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++.|.   ++..|++.|. +|+.++.++..++...+.....+ .++.++.+|+.+.
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   67 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEG-GEAVALAGDVRDE   67 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence            46788888776553   3455556677 89999999887776666555444 2678888898773

>PRK07102 short chain dehydrogenase; Provisional

Probab=83.04  E-value=6.3  Score=33.59  Aligned_cols=58  Identities=12%  Similarity=0.061  Sum_probs=37.7

Q ss_pred             CEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          166 WSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++||-.|+. |.++..    |+++|. +|++++.++...+...+.....+-.+++++++|+.+.
T Consensus         2 ~~vlItGas-~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   63 (243)
T PRK07102          2 KKILIIGAT-SDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDT   63 (243)
T ss_pred             cEEEEEcCC-cHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence            468877754 554444    444576 8999999887665444433333223688999999874

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.91  E-value=7.4  Score=32.86  Aligned_cols=59  Identities=19%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..+++.|. +|++++-++..++...+.....  .++.++.+|+.+.
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~   65 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSST   65 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCH
Confidence            46789999986433   2333444576 8999999987766554443332  2578889998873

>PRK05866 short chain dehydrogenase; Provisional

Probab=82.82  E-value=7.2  Score=34.75  Aligned_cols=60  Identities=17%  Similarity=0.242  Sum_probs=41.2

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.+++.++...+.....+. ++.++.+|+.+.
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~  101 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDL  101 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            46789988876554   3344455576 899999998777666555544332 577888998873

>PRK07109 short chain dehydrogenase; Provisional

Probab=82.77  E-value=7.2  Score=35.59  Aligned_cols=60  Identities=12%  Similarity=0.154  Sum_probs=42.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.++..+. ++.++.+|+.+.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~   69 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADA   69 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCH
Confidence            46788888865544   2344556676 899999998887776666655553 688889998773

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.55  E-value=4  Score=30.76  Aligned_cols=46  Identities=15%  Similarity=0.223  Sum_probs=33.5

Q ss_pred             cCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       173 cG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ||.|.++..+++.   +..+|+.+|.++..++.+++.       .+.++.+|..+.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~   52 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDP   52 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSH
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhh
Confidence            6677787777765   333899999999998887762       367889999884

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=82.35  E-value=8.4  Score=33.38  Aligned_cols=59  Identities=12%  Similarity=0.141  Sum_probs=40.5

Q ss_pred             CCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++ |.++.    .|+++|. +|++++.++..++...+.....+ .++.++..|+.+.
T Consensus         9 ~~~~vlItGas-ggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~   71 (263)
T PRK07814          9 DDQVAVVTGAG-RGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHP   71 (263)
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            46789988864 44444    4455577 99999999877665555544333 2588888998874

>PRK07454 short chain dehydrogenase; Provisional

Probab=82.12  E-value=9.4  Score=32.39  Aligned_cols=58  Identities=21%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             CCEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++|-.|+ +|.++..+    +++|. +|++++.++...+...+..+..+ .++.++.+|+.+.
T Consensus         6 ~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   67 (241)
T PRK07454          6 MPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP   67 (241)
T ss_pred             CCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence            467888885 45544444    44576 89999999876655555444333 2688899999874

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.10  E-value=0.72  Score=38.42  Aligned_cols=47  Identities=19%  Similarity=0.267  Sum_probs=36.2

Q ss_pred             CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      .+.+||++|.| +|..++.+|.. ....|...|-++..++-.++....+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n   77 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN   77 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc
Confidence            36789999999 55566666655 4558999999999999888865544

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=81.84  E-value=8.7  Score=33.01  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=41.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.+...++......+..+. ++.++..|+.+.
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~   72 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSE   72 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            47899999976654   3444555676 899999888777666554444332 577888888874

>PRK06139 short chain dehydrogenase; Provisional

Probab=81.58  E-value=7.9  Score=35.39  Aligned_cols=59  Identities=14%  Similarity=0.189  Sum_probs=43.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.++..+. ++.++..|+.+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d   67 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTD   67 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCC
Confidence            46788888876544   3445556677 899999999888777766655553 67788888876

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=81.55  E-value=8.6  Score=32.82  Aligned_cols=59  Identities=14%  Similarity=0.190  Sum_probs=39.7

Q ss_pred             CCCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNIS  223 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~  223 (259)
                      .++++||-.|+. |.++..    |++.|. +|++++.+...++...+.+...+..++.++..|+.
T Consensus        10 ~~~k~vlItG~~-g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~   72 (247)
T PRK08945         10 LKDRIILVTGAG-DGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL   72 (247)
T ss_pred             cCCCEEEEeCCC-chHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence            457899999864 444444    444576 99999999877766655555444345677777775

>PRK07831 short chain dehydrogenase; Provisional

Probab=81.30  E-value=9.9  Score=32.79  Aligned_cols=62  Identities=15%  Similarity=0.191  Sum_probs=42.1

Q ss_pred             CCCCEEEEEccC-cCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTG-NGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|+. .|.   ++..|+++|. +|+.+|.++..++...+..+. .+..++.++.+|+.+.
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   81 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSE   81 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCH
Confidence            346789999863 332   3455566677 799999988777766665543 3323688889998763

>PRK08589 short chain dehydrogenase; Validated

Probab=81.24  E-value=9  Score=33.46  Aligned_cols=59  Identities=20%  Similarity=0.248  Sum_probs=39.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++.|.   ++..|+++|. +|++++.++ .++...+.....+ .++.++..|+.+.
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~   66 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAE-AVSETVDKIKSNG-GKAKAYHVDISDE   66 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcH-HHHHHHHHHHhcC-CeEEEEEeecCCH
Confidence            46788888877654   3455666676 899999984 4444444343333 2578888898873

>PRK08223 hypothetical protein; Validated

Probab=81.02  E-value=10  Score=34.31  Aligned_cols=32  Identities=28%  Similarity=0.433  Sum_probs=26.1

Q ss_pred             CCCEEEEEccCc--ChhHHHHHhcCCCcEEEEeC
Q 025035          164 SSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDY  195 (259)
Q Consensus       164 ~~~~VLDiGcG~--G~~~~~la~~g~~~V~giD~  195 (259)
                      ++.+||-+|||.  +..+..|+..|..+++.+|.
T Consensus        26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~   59 (287)
T PRK08223         26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF   59 (287)
T ss_pred             hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence            478999999993  44688888889889999983

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=80.82  E-value=10  Score=32.17  Aligned_cols=58  Identities=14%  Similarity=0.183  Sum_probs=39.3

Q ss_pred             CCCEEEEEccCcChhHHHH----HhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~l----a~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++++||-.|++ |.++..+    +++|. +|++++.++.......+.....+ .++.++.+|+.+
T Consensus         2 ~~~~ilItGas-~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~   63 (250)
T TIGR03206         2 KDKTAIVTGGG-GGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITD   63 (250)
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCC
Confidence            36788888764 4444444    44566 89999999877666655544433 268888999876

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=80.80  E-value=2.3  Score=37.66  Aligned_cols=36  Identities=19%  Similarity=0.187  Sum_probs=29.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDA  199 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~  199 (259)
                      ...+||++|+|+|..+..++.....+|+..|.....
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~  121 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVV  121 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhH
Confidence            356799999999999998888755589999987644

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=80.56  E-value=11  Score=31.92  Aligned_cols=59  Identities=15%  Similarity=0.173  Sum_probs=39.0

Q ss_pred             CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++ |.++..    |+++|. +|++++-++..+....+.....+ .++.++.+|+.+.
T Consensus         5 ~~~~ilItGas-g~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~   67 (251)
T PRK12826          5 EGRVALVTGAA-RGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDR   67 (251)
T ss_pred             CCCEEEEcCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence            46788877754 454444    455576 89999998766555544444333 2588899998873

>PRK07062 short chain dehydrogenase; Provisional

Probab=80.48  E-value=11  Score=32.59  Aligned_cols=61  Identities=10%  Similarity=0.078  Sum_probs=42.1

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|++++.++..++.+.+..... +-.++.++..|+.+.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   71 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE   71 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence            47789999877654   4455556677 8999999987776665554332 112577888888874

>PRK07326 short chain dehydrogenase; Provisional

Probab=80.32  E-value=8.9  Score=32.32  Aligned_cols=57  Identities=11%  Similarity=0.079  Sum_probs=38.2

Q ss_pred             CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+++||-+|+ +|.++..++    ++|. +|++++.++.......+.....  .++.++.+|+.+
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~   65 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRD   65 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence            3578888884 555555554    4466 7999999886665554443322  368888889876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	3e-14
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-08
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	1e-07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	2e-07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	3e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	4e-07
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	5e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	6e-07
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	7e-07
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	9e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-06
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	2e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	3e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-06
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	3e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-06
1xxl_A	239	YCGJ protein; structural genomics, protein structu	5e-06
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	6e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	6e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	6e-06
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	1e-05
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	1e-05
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	2e-05
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	3e-05
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	3e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-05
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	6e-05
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	8e-05
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	8e-05
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	9e-05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	1e-04
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	1e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	1e-04
3lpm_A	259	Putative methyltransferase; structural genomics, p	1e-04
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	2e-04
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-04
3lcc_A	235	Putative methyl chloride transferase; halide methy	2e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	3e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	4e-04
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	5e-04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	5e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	5e-04
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	6e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	7e-04
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	8e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 68.5 bits (167), Expect = 3e-14
 Identities = 28/134 (20%), Positives = 41/134 (30%), Gaps = 36/134 (26%)

Query: 89  ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHV 148
            S      YWD  Y            A   WFG                        +  
Sbjct: 1   GSGYREVEYWDQRYQ------GAADSAPYDWFGDF----------------------SSF 32

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             L    +   D+      +L +G GN  L  EL   GF ++T VDYS   +   Q  A 
Sbjct: 33  RALLEPELRPEDR------ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ--AC 84

Query: 209 RDGFSCIKFLVMNI 222
                 +++  M++
Sbjct: 85  YAHVPQLRWETMDV 98

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 142 GHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           GH  N V     + +++  K      VLDIG  +G L   + + G   ++G++   +A  
Sbjct: 15  GHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAE 68

Query: 202 LAQSLANR 209
            A+   + 
Sbjct: 69  QAKEKLDH 76

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.1 bits (122), Expect = 5e-08
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMN 221
           VLD+  G G     L   GF ++ GVD SED I  A+  A     + ++F+V +
Sbjct: 42  VLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN-VEFIVGD 93

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225
            V+D+G G G LL  L K   F  +TGVD S   +  A+     D    ++   +++   
Sbjct: 32  KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91

Query: 226 ILTYFICKSERNEHYTFDL 244
            L Y            +D 
Sbjct: 92  SLVYRD-----KRFSGYDA 105

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           +VLD G G  L    +  +      G++ S+  +  A++ +  + F        +I
Sbjct: 26  TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL-NISKGDI 80

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ    
Sbjct: 39  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK 85

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
             LD+  G G L + L  +   +   VD S++ ++ A++     G    +    +I
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK-PRLACQDI 93

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            LD+G GNG     L+  G+ D+   D +  +I   + + + +    +   V+++
Sbjct: 36  TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDL 89

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 48.8 bits (116), Expect = 5e-07
 Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 2/107 (1%)

Query: 117 EVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNG 176
           + W   + +      T              +        V +  K +S   VLD+G G G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 177 LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNIS 223
                LS  G+ D+T  D++E++I        ++  + I   + +I+
Sbjct: 133 RNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLN-ISTALYDIN 177

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            VL+ G G G     L+K     ++T +D S +++  A+    ++G   +KFL  NI
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANI 96

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            VLD+  G G+   EL+++G+ ++ G+D  E+ + +A+  A       I+FL  ++
Sbjct: 44  RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDV 97

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   +   +
Sbjct: 67  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126

Query: 226 IL----TYFICKSERNEHYTFD 243
            +     + +  S+ + HY F 
Sbjct: 127 HMDLGKEFDVISSQFSFHYAFS 148

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ 225
            V+D+G G G LL+ L K   F  +TGVD S  ++ +AQ   +R      ++  + +   
Sbjct: 32  RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91

Query: 226 ILTYF 230
            LTY 
Sbjct: 92  ALTYQ 96

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
            VLDIG G G  L+   ++G  +  GVD +ED I   +   N      I++L
Sbjct: 44  RVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGKFNVVKSDAIEYL 94

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMN 221
           +++ + +DIG+G G L   L+KQ    +  +D+S+    +A         +  I+ +  +
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101

Query: 222 I 222
           +
Sbjct: 102 V 102

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           +VLD+G G G      ++ G   + G+D SE  +  A+          + +    I
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV---VCYEQKAI 99

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            ++D+G G G   +   + G S + G+D SE  +  A++     G   I +   ++
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG---ITYERADL 98

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 167 SVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            ++D G G G   L+L  L  +G S  TG+D  E  +  A+ L     +   +FL  + 
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPYD-SEFLEGDA 81

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 4/78 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226
            VLD+  G G+    L ++GF  +T VD S+  +  A            +       ++ 
Sbjct: 60  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRR---KEPAFDKWVIEE 115

Query: 227 LTYFICKSERNEHYTFDL 244
             +     +      FD 
Sbjct: 116 ANWLTLDKDVPAGDGFDA 133

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ 204
           + L+IG   G   ++L+      LT +D    AI  A 
Sbjct: 54  NGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRAC 90

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 45.3 bits (107), Expect = 5e-06
 Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
           ++ +      +    +L +  G G     L+  G+ ++T VD S   +  A+ LA   G 
Sbjct: 18  NDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV 76

Query: 213 SCIKFLVMNI 222
             I  +  N+
Sbjct: 77  K-ITTVQSNL 85

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
             VLDIG G G      S     +  GVD +++ + +A S A   G   ++F     
Sbjct: 23  HRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA 78

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 45.7 bits (107), Expect = 6e-06
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGFSCIKFLV 219
           +VLD+G G G  L +  K   + L   D ++ ++   Q            +     +F+ 
Sbjct: 37  TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96

Query: 220 MNISVQILTYFICKSERNEHYTFDLYQIGYYMSNE 254
            + S ++L       +         +   Y   + 
Sbjct: 97  ADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESY 131

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.4 bits (107), Expect = 6e-06
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
            ++D   GNG   + LS+     + G+D S+ A+ +A         S
Sbjct: 59  PLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAANIS 104

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           VLD+G G+G    +LS+ G+    GVD SE  I   +          + F+  ++
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPD---LSFIKGDL 107

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 44.1 bits (104), Expect = 1e-05
 Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 5/56 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           +VL+ G G G L  +L   G   + G++ S +   +A+    ++          + 
Sbjct: 48  NVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE----FSITEGDF 98

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
            VL++  G G L       G+ ++T ++ S   +   +         
Sbjct: 85  PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPAD 130

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 10/116 (8%)

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL-------LQELSKQGFSDL 190
           S     M   ++      +       S   +L IG G G +       +Q        + 
Sbjct: 26  STEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85

Query: 191 TGVDYSEDAINLAQSL-ANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLY 245
             V+ S + I   + L A       +KF     +     Y     E+ E   +D  
Sbjct: 86  EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE--YQSRMLEKKELQKWDFI 139

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           S+LD+  G G  L+  +K+   D  G++ SED +  A+          
Sbjct: 43  SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPDATLHQ 89

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            + DIG G G     L+   + ++TGVD SE+ + +AQ  A       + F V ++
Sbjct: 36  RIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRH-VDFWVQDM 88

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
           VLD+G G G LL+ L+ +G  +  GVD     ++ A++    +  
Sbjct: 56  VLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVH 99

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           S+LD+  G G+ L+ L+      + G++ S D + +A+          
Sbjct: 53  SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPDAVLHH 99

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205
            +LD G G G +   LSKQG  D+ G D     I+ A+ 
Sbjct: 49  KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQ 86

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNI 222
           + DIG G G     L+      +TG+D+    I++    A + G    +  +V ++
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 42.2 bits (99), Expect = 6e-05
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            VL++ +G G   + LS      +T +D S + I  A     R G   ++F   ++
Sbjct: 49  DVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAG----RHGLDNVEFRQQDL 99

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
            VL+ G G+G        Q        D+S + + LA++ A     
Sbjct: 51  RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADV 95

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F  
Sbjct: 50  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 101

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------RDGFSCIKFLVM 220
            VL I  GNG  L++      + L   D   DAI       N      +  +    ++  
Sbjct: 51  KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE 110

Query: 221 NISVQILTYFICKSERNE-----------HYTFDLYQIGYYMSNECFLLK 259
            I        + +                HY+F        M+N   L  
Sbjct: 111 TIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTA 160

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
             VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  + 
Sbjct: 39  EEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA 94

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 165 SWSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
              +LD+GTG G     L  E       ++  VD   DA++LAQ  A       I  L
Sbjct: 110 PCRILDLGTGTGAIALALASERPD---CEIIAVDRMPDAVSLAQRNAQHLAIKNIHIL 164

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            +LD+G G GLL   L ++   +  T VD SE  + +A++     G   +K++  + 
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADY 101

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNI 222
            V  +  G    L  L         L G+DY  +A++ A  LA     +  I     + 
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDA 179

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRD 210
           +++D G G+G LL  L         + GVD S   +  A  + +  
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 23/37 (62%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ 204
           ++D+ +GNG++   LS +  + + GV+  E   ++A+
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAK 89

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNI 222
           + DIG G G     L+      +TG+D   D I +    A +   +  +K +  ++
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSM 105

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ 204
            ++D G GNG   + L +   + L  +D +  A+   +
Sbjct: 20  VIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVK 56

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211
            +L++G G G   + +   GF D+   D S +    A     R  
Sbjct: 46  KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRPV 89

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNI 222
             L  G G G  +  ++      + G+D SE A+  A         +    F+  ++
Sbjct: 69  RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 39.8 bits (93), Expect = 3e-04
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 12/78 (15%)

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             +    ++E+D+      +LDIG G+G +  EL+ +G+  +TG+D + +AI LA++ A 
Sbjct: 21  YPIIHNYLQEDDE------ILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAAR 73

Query: 209 RDGFS-----CIKFLVMN 221
             G +       +F V N
Sbjct: 74  SPGLNQKTGGKAEFKVEN 91

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSL--ANRDGFSCIKFLV 219
            ++D+G G G    +++++   F  + G D S   I  A+ +   + D +  + F +
Sbjct: 39  LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKI 95

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFL 218
              +V DIGTG+G   + + + S    + +   D S  A+ +A+  A R G S      
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSD---AIVFATDVSSKAVEIARKNAERHGVSDRFFVR 178

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
           + DIG G G     L+ QG   +  V+ S      A     
Sbjct: 38  IADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHPQ 77

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
           +LD+G+G G     L+  G   + G++ +   + LA     R     + F    I
Sbjct: 45  ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTHPSVTFHHGTI 93

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 39.3 bits (91), Expect = 6e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%)

Query: 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI 222
            +   LD G G G + + L    F ++  VD +ED +  A++    +G     +    +
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL 137

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 14/85 (16%)

Query: 164 SSWSVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV 219
           S   V+D+GTG+G     +           +T VD S DA+ +A+  A R G   + +  
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAV-VDWAA 85

Query: 220 MNISVQILTYFICKSERNEHYTFDL 244
            +     + + I ++ER     +  
Sbjct: 86  AD----GIEWLIERAERGR--PWHA 104

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 7/42 (16%)

Query: 167 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQ 204
             L+IGTG+     L+ ++        +T  +  E+    A+
Sbjct: 58  VALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYAR 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.58
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.45
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.38
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.37
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.36
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.33
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.32
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.3
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.29
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.29
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.28
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.27
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.27
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.26
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.26
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.26
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.26
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.25
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.25
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.23
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.23
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.23
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.22
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.22
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.22
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.22
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.21
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.21
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.2
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.2
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.19
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.19
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.19
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.18
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.18
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.17
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.17
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.17
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.17
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.17
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.17
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.17
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.16
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.15
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.15
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.15
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.15
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.15
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.14
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.14
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.14
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.14
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.14
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.14
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.13
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.13
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.13
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.13
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.13
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.13
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.12
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.12
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.11
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.11
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.11
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.11
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.1
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.1
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.1
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.1
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.1
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.09
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.09
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.09
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.09
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.08
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.08
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.08
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.07
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.07
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.07
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.07
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.07
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.07
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.07
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.06
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.06
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.06
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.06
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.06
3ocj_A	305	Putative exported protein; structural genomics, PS	99.06
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.05
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.05
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.04
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.04
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.03
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.03
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.03
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.03
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.03
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.02
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.02
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.02
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.02
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.02
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.01
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.01
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.01
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.01
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.01
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.0
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.0
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.0
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.0
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.99
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.99
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.99
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.98
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.98
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.98
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.98
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.98
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.98
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.98
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.97
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.97
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.97
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.97
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.97
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.97
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.96
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.96
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.95
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.95
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.95
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.94
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.94
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.94
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.94
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.93
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.93
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.93
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.92
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.92
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.92
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.92
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.91
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.91
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.9
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	98.9
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.9
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.88
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.88
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.88
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.88
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.88
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.87
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.87
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.87
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.87
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.86
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.86
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.86
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.86
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.86
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.85
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.85
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.85
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.84
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.84
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.84
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.84
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.84
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.83
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.83
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.83
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.83
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.83
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.83
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.83
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.82
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.82
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.81
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.81
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.8
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.8
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.8
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.79
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.79
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.79
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.79
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.78
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.78
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.78
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.78
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	98.77
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.77
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.76
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.75
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.75
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.74
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.74
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.73
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.73
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.73
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.72
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.72
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.72
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.72
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.7
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.68
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.67
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.67
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.67
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.67
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.67
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.66
2o07_A	304	Spermidine synthase; structural genomics, structur	98.66
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.66
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.65
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.63
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.62
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.62
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.62
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.62
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.61
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.61
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.6
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.59
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.59
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.59
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.58
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.57
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.56
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.55
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.54
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.53
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.52
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.51
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.51
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.5
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.48
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.47
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.46
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.45
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.44
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.44
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.43
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.43
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.4
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.37
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.33
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.31
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.29
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.29
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.28
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.28
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.26
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.22
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.21
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.0
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.99
3lkd_A	542	Type I restriction-modification system methyltrans	97.98
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.94
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.75
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.73
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.71
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.68
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.65
3khk_A	544	Type I restriction-modification system methylation	97.6
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.48
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.47
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.47
3ufb_A	530	Type I restriction-modification system methyltran	97.2
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.13
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.04
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.92
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.81
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.8
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.8
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	96.66
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.56
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.5
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.48
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.36
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.35
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.2
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.05
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.93
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.78
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.56
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	94.93
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	94.83
2oo3_A	283	Protein involved in catabolism of external DNA; st	94.8
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.49
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.16
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.06
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	93.85
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	93.67
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.3
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.69
3me5_A	482	Cytosine-specific methyltransferase; structural ge	92.12
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.1
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	91.7
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	91.17
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.09
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	91.03
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.01
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	91.01
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.74
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	90.52
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.41
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.36
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.18
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	90.05
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	89.86
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.76
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	89.73
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	89.72
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	89.6
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.56
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.37
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	89.27
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	89.24
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	88.85
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	88.83
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	88.79
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	88.77
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	88.75
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	88.74
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	88.65
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	88.58
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.58
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	88.47
3rih_A	293	Short chain dehydrogenase or reductase; structural	88.45
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.43
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	88.35
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.3
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.18
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	88.11
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	88.07
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.05
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.02
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	87.99
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	87.89
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	87.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.74
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	87.74
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	87.72
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	87.55
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	87.49
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	87.37
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.31
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	87.26
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	87.18
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	87.11
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	87.09
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	86.98
3cxt_A	291	Dehydrogenase with different specificities; rossma	86.9
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	86.88
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	86.86
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	86.84
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	86.83
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	86.76
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	86.7
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	86.58
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.57
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	86.49
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	86.49
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	86.47
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	86.45
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	86.09
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	86.03
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	85.59
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	85.58
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	85.51
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	85.26
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.23
1xkq_A	280	Short-chain reductase family member (5D234); parra	85.22
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	85.17
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.12
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	84.82
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	84.57
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	84.55
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	84.53
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	84.47
1xq1_A	266	Putative tropinone reducatse; structural genomics,	84.45
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	84.38
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	84.38
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	84.35
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	84.33
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	84.12
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	83.71
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	83.68
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	83.6
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	83.55
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	83.55
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.48
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	83.47
1xhl_A	297	Short-chain dehydrogenase/reductase family member	83.37
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	83.37
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	83.35
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	83.33
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.29
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	83.08
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	83.03
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	82.94
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	82.91
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	82.71
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	82.68
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	82.62
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.61
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	82.57
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	82.45
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	82.33
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	82.05
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	81.9
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	81.87
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	81.86
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	81.81
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	81.75
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	81.65
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	81.65
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	81.46
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	81.41
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	81.4
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	81.37
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	81.34
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	81.18
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	81.17
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	81.11
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	81.1
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	81.04
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.85
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	80.72
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	80.66
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.28
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	80.08
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	80.02

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.58  E-value=6.6e-15  Score=128.69  Aligned_cols=125  Identities=16%  Similarity=0.123  Sum_probs=85.9

Q ss_pred             CCCCCCCCCCCCCCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhh
Q 025035           80 KEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEEN  159 (259)
Q Consensus        80 ~~~~~~~~~~s~l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l  159 (259)
                      ++-.+.+...+.+...+||+.+|......|.          .......+..|+..+.                       
T Consensus        18 ~~~~~~e~~~~~~~~~~~Wd~~y~~~~~~~~----------~~~~~~~l~~~~~~~~-----------------------   64 (252)
T 2gb4_A           18 KEHPDAEVQKNQVLTLEDWKEKWVTRHISFH----------QEQGHQLLKKHLDTFL-----------------------   64 (252)
T ss_dssp             ----CTTTTTTCCCCHHHHHHHHHHTCCTTC----------CTTCCHHHHHHHHHHH-----------------------
T ss_pred             cCCCCccccccccCCHHHHHHHHhcCCCCcc----------cCCCCHHHHHHHHHhc-----------------------
Confidence            3444457778888889999999976432221          1111222334443211                       


Q ss_pred             ccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-----------------cCCcceEEEEecc
Q 025035          160 DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----------------DGFSCIKFLVMNI  222 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-----------------~~l~~i~~i~~D~  222 (259)
                       ...++.+|||+|||+|..+..|+++|+ +|+|||+|+.||+.|+++...                 ....+++|+++|+
T Consensus        65 -~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~  142 (252)
T 2gb4_A           65 -KGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI  142 (252)
T ss_dssp             -TTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT
T ss_pred             -cCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc
Confidence             012478999999999999999999988 999999999999999876531                 0124799999999


Q ss_pred             cCCCc----ceeEEEecccCc
Q 025035          223 SVQIL----TYFICKSERNEH  239 (259)
Q Consensus       223 ~~~~~----~fdvv~~~v~~h  239 (259)
                      .+++.    .||+|++....|
T Consensus       143 ~~l~~~~~~~FD~V~~~~~l~  163 (252)
T 2gb4_A          143 FDLPRANIGKFDRIWDRGALV  163 (252)
T ss_dssp             TTGGGGCCCCEEEEEESSSTT
T ss_pred             ccCCcccCCCEEEEEEhhhhh
Confidence            99653    699887655443

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.45  E-value=3.3e-13  Score=118.46  Aligned_cols=78  Identities=10%  Similarity=0.063  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC---CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG---FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g---~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~  237 (259)
                      .++.+|||||||+|..+..++++.   ..+|+|+|+|+.||+.|+++++..+.. +++|+++|+.++++ .||++.+...
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~  148 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  148 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence            567899999999999999999861   238999999999999999999877754 69999999999776 7887666555


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       149 l~~  151 (261)
T 4gek_A          149 LQF  151 (261)
T ss_dssp             GGG
T ss_pred             eee
Confidence            554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.38  E-value=1.3e-12  Score=109.95  Aligned_cols=75  Identities=16%  Similarity=0.071  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc------------CCcceEEEEecccCCCc----
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVMNISVQIL----  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~------------~l~~i~~i~~D~~~~~~----  227 (259)
                      ++.+|||+|||+|..+..|+++|. +|+|+|+|+.||+.|+++....            +..+++|+++|+.++++    
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~  100 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIG  100 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccCC
Confidence            578999999999999999999987 9999999999999999876431            12479999999999764    


Q ss_pred             ceeEEEecccCc
Q 025035          228 TYFICKSERNEH  239 (259)
Q Consensus       228 ~fdvv~~~v~~h  239 (259)
                      .||+|++....|
T Consensus       101 ~fD~v~~~~~l~  112 (203)
T 1pjz_A          101 HCAAFYDRAAMI  112 (203)
T ss_dssp             SEEEEEEESCGG
T ss_pred             CEEEEEECcchh
Confidence            699877654443

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.37  E-value=1.9e-12  Score=107.89  Aligned_cols=72  Identities=22%  Similarity=0.326  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++...  ..+++++++|+.+.++   .||+|++...
T Consensus        42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~  116 (215)
T 2pxx_A           42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGT  116 (215)
T ss_dssp             TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESH
T ss_pred             CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcc
Confidence            4779999999999999999999766999999999999999998764  2479999999988653   6887765443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.36  E-value=2.4e-12  Score=110.17  Aligned_cols=79  Identities=16%  Similarity=0.031  Sum_probs=68.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++..++ .+++++++|+.+.+.  .||+|+++...|.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  156 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGG  156 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSS
T ss_pred             CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCC
Confidence            57899999999999999999997 5999999999999999999999988 479999999988543  7998887776665


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      ..+
T Consensus       157 ~~~  159 (241)
T 3gdh_A          157 PDY  159 (241)
T ss_dssp             GGG
T ss_pred             cch
Confidence            444

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.33  E-value=2.6e-12  Score=106.19  Aligned_cols=78  Identities=15%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++++..+|+|+|+|+.|++.|+++++..++.+++++++|+.+.     ...||+|+.+..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p  122 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP  122 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence            357899999999999999888887778999999999999999999988887899999999874     347888777655


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       123 ~~~  125 (189)
T 3p9n_A          123 YNV  125 (189)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            544

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.32  E-value=1.1e-12  Score=126.84  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----Cccee-EEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYF-ICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fd-vv~~~v~  237 (259)
                      ++.+|||||||.|.++..|+++|. +|+|||.|+.+|+.|+.++...|..+|+|.++++.++     +..|| |++++++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            467999999999999999999997 8999999999999999999888755899999999875     23788 4566677


Q ss_pred             Cccccc
Q 025035          238 EHYTFD  243 (259)
Q Consensus       238 ~h~~~D  243 (259)
                      +|.+..
T Consensus       145 ehv~~~  150 (569)
T 4azs_A          145 HHIVHL  150 (569)
T ss_dssp             HHHHHH
T ss_pred             hcCCCH
Confidence            777643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.30  E-value=5.7e-12  Score=107.34  Aligned_cols=76  Identities=14%  Similarity=0.024  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...+. .+++|+++|+.+.+.  .||+|++..+.|.
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            356999999999999999998765 899999999999999999876443 369999999998654  7997766555443

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.29  E-value=1.2e-11  Score=101.81  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.+++++...++.+++++++|+.+.+.  .||+|++..+.|
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  108 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLM  108 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGG
T ss_pred             CCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhh
Confidence            467999999999999999999876 999999999999999999988887779999999988654  788766655444

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.29  E-value=1.4e-11  Score=106.43  Aligned_cols=79  Identities=16%  Similarity=0.269  Sum_probs=67.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...++.+++++++|+.++++   .||+|++....|
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            3578999999999999999999875 999999999999999999988887789999999998664   799777765544


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       115 ~~~  117 (260)
T 1vl5_A          115 HFP  117 (260)
T ss_dssp             GCS
T ss_pred             hcC
Confidence            433

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.29  E-value=4.8e-11  Score=102.35  Aligned_cols=69  Identities=23%  Similarity=0.433  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...+. +++++++|+.+.+.  .||+|.+
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~  111 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTM  111 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccCCCccEEEE
Confidence            467999999999999999999976 999999999999999999987776 79999999988654  6887664

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.28  E-value=2.2e-11  Score=104.70  Aligned_cols=78  Identities=19%  Similarity=0.115  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.+++++...++.+ ++++++|+.++++   .||+|++..+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  124 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAI  124 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCS
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChH
Confidence            4578999999999999999999855599999999999999999999888865 9999999988764   79977665554


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       125 ~~  126 (257)
T 3f4k_A          125 YN  126 (257)
T ss_dssp             CC
T ss_pred             hh
Confidence            44

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.27  E-value=1.1e-11  Score=101.55  Aligned_cols=72  Identities=14%  Similarity=0.026  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----CcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++++ .+|+|+|+|+.|++.|+++++..++.++++++.+...+    ...||+++.+
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS-KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            357899999999999999999984 49999999999999999999988887899999887763    2268876654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.27  E-value=2.8e-11  Score=105.98  Aligned_cols=78  Identities=27%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc----ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL----TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~----~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...++ .+++++++|+.+.++    .||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            35789999999999999999988766999999999999999999987776 369999999988543    6897776655


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       143 l~~  145 (298)
T 1ri5_A          143 FHY  145 (298)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            554

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.26  E-value=1.9e-12  Score=112.97  Aligned_cols=78  Identities=14%  Similarity=0.216  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC--C---------------------------c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG--F---------------------------S  213 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~--l---------------------------~  213 (259)
                      .++.+|||||||+|.++..++..|+.+|+|+|+|+.|++.|+++++...  +                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            3577999999999999888888877689999999999999998765431  0                           1


Q ss_pred             ceE-EEEecccCC-------CcceeEEEecccCcc
Q 025035          214 CIK-FLVMNISVQ-------ILTYFICKSERNEHY  240 (259)
Q Consensus       214 ~i~-~i~~D~~~~-------~~~fdvv~~~v~~h~  240 (259)
                      +++ ++++|+.+.       ...||+|.+..++|+
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~  168 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMEC  168 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHH
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHH
Confidence            244 899999883       237998777766654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.26  E-value=2e-11  Score=103.60  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=60.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~  240 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++...    +++++++|+.+..  ..||+|++..+.|+
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  115 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNIVLTHVLEH  115 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEEEEhhHHHh
Confidence            3577999999999999999999876 899999999999999997643    7999999998863  37896655544433

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.26  E-value=2.6e-11  Score=103.74  Aligned_cols=76  Identities=18%  Similarity=0.112  Sum_probs=62.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--------ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--------TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--------~fdvv~~  234 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++++.   ..+++++++|+.+.+.        .||+|++
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~  130 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIYM  130 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEEE
Confidence            4578999999999999999999977 99999999999999999873   2379999999998543        2787777


Q ss_pred             cccCcccc
Q 025035          235 ERNEHYTF  242 (259)
Q Consensus       235 ~v~~h~~~  242 (259)
                      ..+.|+..
T Consensus       131 ~~~~~~~~  138 (245)
T 3ggd_A          131 RTGFHHIP  138 (245)
T ss_dssp             ESSSTTSC
T ss_pred             cchhhcCC
Confidence            66665544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.26  E-value=3e-11  Score=104.93  Aligned_cols=78  Identities=19%  Similarity=0.173  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++++..++. +++++++|+.++++   .||+|++..+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~  124 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAI  124 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCc
Confidence            457899999999999999999996669999999999999999999988875 49999999998753   79977665544


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       125 ~~  126 (267)
T 3kkz_A          125 YN  126 (267)
T ss_dssp             GG
T ss_pred             ee
Confidence            43

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.25  E-value=3.3e-11  Score=101.06  Aligned_cols=76  Identities=20%  Similarity=0.124  Sum_probs=63.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~~  241 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...+  +++++++|+.+.+.  .||+|++..+.|+.
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  127 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTAELFDLIVVAEVLYYL  127 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCSCCEEEEEEESCGGGS
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCCCCccEEEEccHHHhC
Confidence            467999999999999999999875 99999999999999999887643  79999999998753  79976665554443


Q ss_pred             c
Q 025035          242 F  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       128 ~  128 (216)
T 3ofk_A          128 E  128 (216)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.25  E-value=2.7e-11  Score=101.01  Aligned_cols=76  Identities=16%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.+++++...++ +++++++|+.+.+..||+|+.+...|.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFNSRVDIVIMNPPFGS  124 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCCCCCSEEEECCCCSS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcCCCCCEEEEcCCCcc
Confidence            5789999999999999999998766899999999999999999988887 899999999998778898777665443

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.24  E-value=3.2e-11  Score=101.71  Aligned_cols=78  Identities=28%  Similarity=0.420  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-----ceEEEEecccCCCc---ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-----~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...++.     +++++++|+.+.++   .||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            3578999999999999999999966 9999999999999999998877652     58999999998654   7897665


Q ss_pred             cccCccc
Q 025035          235 ERNEHYT  241 (259)
Q Consensus       235 ~v~~h~~  241 (259)
                      ..+.|..
T Consensus       108 ~~~l~~~  114 (235)
T 3sm3_A          108 QAFLTSV  114 (235)
T ss_dssp             ESCGGGC
T ss_pred             cchhhcC
Confidence            5444433

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=8.9e-12  Score=104.53  Aligned_cols=75  Identities=11%  Similarity=-0.049  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC--cceEEEEecccCCC-----cc-eeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVMNISVQI-----LT-YFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l--~~i~~i~~D~~~~~-----~~-fdvv~~~  235 (259)
                      ++.+|||+|||+|.+++.++.++..+|+|+|+|+.|++.|+++++..++  .+++++++|+.+..     .. ||+|+.+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  132 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD  132 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence            4789999999999999998888767999999999999999999999887  58999999987632     26 8987765


Q ss_pred             ccC
Q 025035          236 RNE  238 (259)
Q Consensus       236 v~~  238 (259)
                      ...
T Consensus       133 ~~~  135 (201)
T 2ift_A          133 PPF  135 (201)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            553

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.23  E-value=4.3e-11  Score=102.47  Aligned_cols=77  Identities=23%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++...++.+++++++|+.++++   .||+|++....|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~   98 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH   98 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence            4678999999999999999999875 999999999999999999988887789999999988664   699777764444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      +
T Consensus        99 ~   99 (239)
T 1xxl_A           99 H   99 (239)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.23  E-value=4.6e-11  Score=104.74  Aligned_cols=76  Identities=25%  Similarity=0.329  Sum_probs=67.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~~  241 (259)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++...++ +++++++|+.+.+.  .||+|++..+.|+.
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~i~~~~~~~~~  197 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYDFIVSTVVFMFL  197 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEEEEEECSSGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCccEEEEccchhhC
Confidence            578999999999999999999977 999999999999999999998887 89999999998653  79977776655543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.23  E-value=5e-11  Score=102.37  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++++..++. +++++++|+.+.++  .||+|++..+.|
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~  114 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW  114 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChH
Confidence            457899999999999999999873338999999999999999999888875 69999999998654  789777655444


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      +.
T Consensus       115 ~~  116 (256)
T 1nkv_A          115 IA  116 (256)
T ss_dssp             GT
T ss_pred             hc
Confidence            43

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.22  E-value=4.9e-11  Score=99.43  Aligned_cols=76  Identities=20%  Similarity=0.288  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-cceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-LTYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-~~fdvv~~~v~~h  239 (259)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++.+++++++|+.+.. ..||+|++....|
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHH
Confidence            578999999999999999999877799999999999999999999888867999999998754 4888777765444

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.22  E-value=1.2e-11  Score=103.82  Aligned_cols=76  Identities=12%  Similarity=-0.089  Sum_probs=64.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-C---cceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-I---LTYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~---~~fdvv~~~v~~h  239 (259)
                      ++.+|||+|||+|.+++.++.++..+|+|+|+|+.|++.|+++++..++.+++++++|+.+. +   ..||+|+.+...|
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~  133 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR  133 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence            47899999999999999988887669999999999999999999988887899999998772 2   3789877665533

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.22  E-value=3.5e-11  Score=97.93  Aligned_cols=75  Identities=19%  Similarity=0.106  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-C---cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-I---LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~---~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++++..+|+|+|+|+.+++.|+++++..++. +++++++|+.+. +   ..||+++.+..
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            467899999999999999999987669999999999999999999988875 699999998872 2   36887776543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.22  E-value=2.7e-11  Score=98.95  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-------CcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-------ILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-------~~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|++++...++. +++++++|+.+.       ...||+++.
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            357899999999999999999887669999999999999999999888873 699999999873       347887776


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       123 ~~~  125 (187)
T 2fhp_A          123 DPP  125 (187)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.21  E-value=9.3e-11  Score=97.65  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEecccCccc
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERNEHYT  241 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~~h~~  241 (259)
                      .+|||||||+|.++..+++++..+|+|+|+|+.+++.|++++...++. +++++++|+.++++   .||+|++..+.|+.
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            499999999999999999983349999999999999999999888875 69999999998654   79977665554443

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.21  E-value=5.6e-11  Score=105.23  Aligned_cols=78  Identities=13%  Similarity=0.042  Sum_probs=67.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCcceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      .++.+|||||||+|.++..+++. | .+|+|+|+|+.+++.|++++...++. +++++++|+.++...||+|++..+.|+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~~~~  149 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEH  149 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHcCCCccEEEEcchHHh
Confidence            45789999999999999999998 7 49999999999999999999988886 699999999988778997666554444


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      .
T Consensus       150 ~  150 (302)
T 3hem_A          150 F  150 (302)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.20  E-value=9e-11  Score=98.07  Aligned_cols=79  Identities=13%  Similarity=-0.034  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++.+++++++|+.+...   .||+|+.....|
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence            457899999999999999999985 4999999999999999999998888789999999988543   789777765544


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       155 ~~~  157 (210)
T 3lbf_A          155 EIP  157 (210)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            433

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.20  E-value=8.2e-11  Score=104.82  Aligned_cols=77  Identities=16%  Similarity=0.173  Sum_probs=66.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..++++ +. +|+|+|+|+.+++.|++++...++. +++++++|+.+.++   .||+|++..+
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  194 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNES  194 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECCc
Confidence            45789999999999999999998 65 8999999999999999999988875 69999999998753   7997666544


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       195 l~~  197 (312)
T 3vc1_A          195 TMY  197 (312)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            443

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.19  E-value=4.4e-11  Score=101.73  Aligned_cols=76  Identities=24%  Similarity=0.294  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++..   ..+++++++|+.+.++   .||+|++..+.|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE---GPDLSFIKGDLSSLPFENEQFEAIMAINSLE  127 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC---BTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc---cCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence            3578999999999999999999976 99999999999999998752   2479999999998754   799766655544


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       128 ~~~  130 (242)
T 3l8d_A          128 WTE  130 (242)
T ss_dssp             SSS
T ss_pred             hcc
Confidence            433

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.19  E-value=6.4e-11  Score=103.78  Aligned_cols=77  Identities=18%  Similarity=0.231  Sum_probs=64.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC----cceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI----LTYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~----~~fdvv~~~v~~  238 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...++ .+++++++|+.+.+    ..||+|++..+.
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            367999999999999999999966 999999999999999999988887 47999999999876    379976665544


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |+.
T Consensus       147 ~~~  149 (285)
T 4htf_A          147 EWV  149 (285)
T ss_dssp             GGC
T ss_pred             hcc
Confidence            433

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.19  E-value=4e-11  Score=100.83  Aligned_cols=78  Identities=28%  Similarity=0.381  Sum_probs=64.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCc-----ceEEEEecccCCCc---ceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~-----~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      ++.+|||||||+|.++..+++++. .+|+|+|+|+.+++.|++++...++.     +++++++|+...+.   .||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  108 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATV  108 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEee
Confidence            578999999999999999999843 59999999999999999998877765     69999999977654   7886554


Q ss_pred             c-ccCccc
Q 025035          235 E-RNEHYT  241 (259)
Q Consensus       235 ~-v~~h~~  241 (259)
                      . +++|..
T Consensus       109 ~~~l~~~~  116 (217)
T 3jwh_A          109 IEVIEHLD  116 (217)
T ss_dssp             ESCGGGCC
T ss_pred             HHHHHcCC
Confidence            4 444443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.18  E-value=1.4e-10  Score=100.64  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++. +++++++|+.++++   .||+|++..+.
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence            357899999999999999999863349999999999999999999888875 59999999998754   79976655444


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       140 ~~  141 (273)
T 3bus_A          140 HH  141 (273)
T ss_dssp             TT
T ss_pred             hh
Confidence            33

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.18  E-value=7.9e-11  Score=98.30  Aligned_cols=76  Identities=17%  Similarity=0.077  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEH  239 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h  239 (259)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++    .+..+++++++|+.+..  ..||+|++..+.|
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~  118 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLA  118 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEEEEEEESCGG
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCceeEEEEechhh
Confidence            34578999999999999999999966 99999999999999988    45457999999998862  3789666655544


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       119 ~~~  121 (218)
T 3ou2_A          119 HVP  121 (218)
T ss_dssp             GSC
T ss_pred             cCC
Confidence            433

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.17  E-value=7.7e-11  Score=98.86  Aligned_cols=79  Identities=27%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++.+  ..+|+|+|+|+.+++.+++++...++.+++++++|+.+.++   .||+|++..+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  115 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT  115 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence            457899999999999999999984  34999999999999999999988888789999999988653   6997666555


Q ss_pred             Cccc
Q 025035          238 EHYT  241 (259)
Q Consensus       238 ~h~~  241 (259)
                      .|..
T Consensus       116 l~~~  119 (219)
T 3dh0_A          116 FHEL  119 (219)
T ss_dssp             GGGC
T ss_pred             hhhc
Confidence            4443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.17  E-value=7.7e-11  Score=108.63  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--~~fdvv~~~v~~  238 (259)
                      .++++|||||||+|.+++.+++.|..+|+|||.|+ |++.|+++++.+|+.+ |++++++++++.  ..+|+|.++.+.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~  159 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMG  159 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCB
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccc
Confidence            36889999999999999999999988999999997 8999999999999864 999999998854  489988876653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.17  E-value=9.5e-11  Score=99.41  Aligned_cols=78  Identities=24%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+  +++++++|+.+.++  .||+|++..+.|
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~  120 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKYDMVVSALSIH  120 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCEEEEEEESCGG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCceEEEEeCccc
Confidence            457899999999999999999983 3499999999999999999886654  89999999999764  799766655544


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       121 ~~~  123 (234)
T 3dtn_A          121 HLE  123 (234)
T ss_dssp             GSC
T ss_pred             cCC
Confidence            433

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.17  E-value=9.6e-11  Score=98.53  Aligned_cols=78  Identities=27%  Similarity=0.316  Sum_probs=64.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCc-----ceEEEEecccCCCc---ceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~-----~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      ++.+|||||||+|.++..+++.+. .+|+|+|+|+.+++.+++++...++.     +++++++|+...+.   .||+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            578999999999999999999853 59999999999999999998776654     69999999977654   7886554


Q ss_pred             -cccCccc
Q 025035          235 -ERNEHYT  241 (259)
Q Consensus       235 -~v~~h~~  241 (259)
                       .+++|..
T Consensus       109 ~~~l~~~~  116 (219)
T 3jwg_A          109 IEVIEHLD  116 (219)
T ss_dssp             ESCGGGCC
T ss_pred             HHHHHhCC
Confidence             4445554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.17  E-value=1e-10  Score=100.19  Aligned_cols=75  Identities=17%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.+++++...  .+++++++|+.+.++   .||+|++..+.|+
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  170 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhhh
Confidence            57899999999999999999887658999999999999999987654  479999999988654   7886665544443

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.17  E-value=5.7e-11  Score=101.61  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=64.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|++++...+..+++++++|+.+.++   .||+|++..+.|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            4789999999999999999988656999999999999999999877654469999999988654   6897665554443

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.17  E-value=3.1e-11  Score=96.99  Aligned_cols=74  Identities=16%  Similarity=0.230  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-------ceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-------TYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-------~fdvv~~~v  236 (259)
                      ++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++...++ +++++++|+.+...       .||+++.+.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            578999999999999999999977 599999999999999999988887 89999999987321       588877765


Q ss_pred             cCc
Q 025035          237 NEH  239 (259)
Q Consensus       237 ~~h  239 (259)
                      ..|
T Consensus       119 ~~~  121 (171)
T 1ws6_A          119 PYA  121 (171)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            443

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.16  E-value=9.1e-11  Score=97.53  Aligned_cols=74  Identities=27%  Similarity=0.275  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTF  242 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~~  242 (259)
                      ++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.|++++.     +++++++|+.+++..||+|+++...|...
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEISGKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCCCCEEEEEECCCC----
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCCCCeeEEEECCCchhcc
Confidence            578999999999999999999876689999999999999999875     68999999999877899888776655543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.15  E-value=1.2e-10  Score=102.41  Aligned_cols=78  Identities=23%  Similarity=0.146  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+. +++++++|+.+.++  .||+|++..+.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcCCCeeEEEECChh
Confidence            45789999999999999999987 2 24999999999999999999887765 89999999998654  79977666554


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |..
T Consensus       100 ~~~  102 (284)
T 3gu3_A          100 LHM  102 (284)
T ss_dssp             GGC
T ss_pred             hcC
Confidence            443

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.15  E-value=1.2e-10  Score=102.20  Aligned_cols=78  Identities=19%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC----cceEEEEecccCCC------cceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVMNISVQI------LTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l----~~i~~i~~D~~~~~------~~fdvv~  233 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+.    .++.+.++|+.+++      ..||+|+
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            467999999999999999999977 999999999999999998744332    36889999988754      3899777


Q ss_pred             e--cccCcccc
Q 025035          234 S--ERNEHYTF  242 (259)
Q Consensus       234 ~--~v~~h~~~  242 (259)
                      +  .++.|...
T Consensus       136 ~~g~~l~~~~~  146 (293)
T 3thr_A          136 CLGNSFAHLPD  146 (293)
T ss_dssp             ECTTCGGGSCC
T ss_pred             EcChHHhhcCc
Confidence            6  45555543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.15  E-value=1.5e-10  Score=97.45  Aligned_cols=72  Identities=17%  Similarity=0.076  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-Cc--ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-IL--TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~--~fdvv~~~  235 (259)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++++..++. +++++++|+.+. +.  .||+++..
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~  129 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAG-GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIG  129 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEEC
Confidence            457899999999999999999994 49999999999999999999999987 799999999883 22  56765543

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.15  E-value=1.6e-10  Score=102.07  Aligned_cols=78  Identities=15%  Similarity=0.271  Sum_probs=63.9

Q ss_pred             CCCEEEEEccCcChhHHHHHh--cCCCcEEEEeCCHHHHHHHHHHhHhc-C-CcceEEEEecccCCC---------ccee
Q 025035          164 SSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD-G-FSCIKFLVMNISVQI---------LTYF  230 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~--~g~~~V~giD~S~~~i~~a~~~~~~~-~-l~~i~~i~~D~~~~~---------~~fd  230 (259)
                      ++.+|||||||+|.++..+++  .+..+|+|+|+|+.+++.|+++++.. + ..+++|+++|+.+++         ..||
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  115 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID  115 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence            578999999999999999996  34559999999999999999998876 2 347999999999854         3688


Q ss_pred             EEEecccCccc
Q 025035          231 ICKSERNEHYT  241 (259)
Q Consensus       231 vv~~~v~~h~~  241 (259)
                      +|++..+.|+.
T Consensus       116 ~V~~~~~l~~~  126 (299)
T 3g5t_A          116 MITAVECAHWF  126 (299)
T ss_dssp             EEEEESCGGGS
T ss_pred             EEeHhhHHHHh
Confidence            77766555544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.15  E-value=1.7e-10  Score=99.19  Aligned_cols=77  Identities=12%  Similarity=0.095  Sum_probs=64.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++++ ..+..+++++++|+.+.++   .||+|++....|
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            3578999999999999999999865 9999999999999999988 3334579999999988654   689777665555


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      ..
T Consensus       116 ~~  117 (263)
T 2yqz_A          116 LV  117 (263)
T ss_dssp             GC
T ss_pred             hc
Confidence            44

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.14  E-value=1.8e-10  Score=100.26  Aligned_cols=80  Identities=21%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...++.+++++++|+.+.++   .||+|++..+.
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            457899999999999999999984 34999999999999999999998888789999999998654   79977665555


Q ss_pred             cccc
Q 025035          239 HYTF  242 (259)
Q Consensus       239 h~~~  242 (259)
                      |...
T Consensus       116 ~~~~  119 (276)
T 3mgg_A          116 EHLQ  119 (276)
T ss_dssp             GGCS
T ss_pred             hhcC
Confidence            4433

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.14  E-value=1.5e-10  Score=99.43  Aligned_cols=75  Identities=23%  Similarity=0.298  Sum_probs=63.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++..   ..+++++++|+.++++   .||+|++..+.|.
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  120 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHY  120 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhhh
Confidence            578999999999999999999977699999999999999999876   2479999999988654   7997666555544


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      .
T Consensus       121 ~  121 (253)
T 3g5l_A          121 I  121 (253)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.14  E-value=1.2e-10  Score=104.07  Aligned_cols=79  Identities=24%  Similarity=0.234  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc------ceEEEEecc------cC-----CC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVMNI------SV-----QI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~------~i~~i~~D~------~~-----~~  226 (259)
                      ++.+|||||||+|..+..+++.+..+|+|+|+|+.||+.|++++...+..      +++|.+.|+      .+     ..
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            46899999999998777777765559999999999999999988765532      367888888      21     12


Q ss_pred             cceeEEEecccCcccc
Q 025035          227 LTYFICKSERNEHYTF  242 (259)
Q Consensus       227 ~~fdvv~~~v~~h~~~  242 (259)
                      ..||+|.+....|+.+
T Consensus       128 ~~FD~V~~~~~lhy~~  143 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSF  143 (302)
T ss_dssp             SCEEEEEEESCGGGTC
T ss_pred             CCeeEEEECchHHHhC
Confidence            3799887776777643

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.14  E-value=4.3e-11  Score=104.76  Aligned_cols=71  Identities=20%  Similarity=0.165  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      .+.+|||||||+|.++..|++++. +|+|+|+|+.|++.|++      .++++++++|+.++++   +||+|.+....|+
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~  111 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW  111 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence            357999999999999999999975 99999999999987754      2479999999999765   7998777776665


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      .
T Consensus       112 ~  112 (257)
T 4hg2_A          112 F  112 (257)
T ss_dssp             C
T ss_pred             h
Confidence            4

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.14  E-value=2.1e-10  Score=100.94  Aligned_cols=77  Identities=16%  Similarity=0.110  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.|++++...++. +++++++|+.++++   .||+|++..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  159 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  159 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence            45789999999999999999987 65 9999999999999999999888774 69999999999764   7997666544


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       160 l~~  162 (297)
T 2o57_A          160 FLH  162 (297)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            433

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.14  E-value=1.2e-10  Score=102.55  Aligned_cols=73  Identities=10%  Similarity=-0.062  Sum_probs=64.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.+++.+..+|+|+|+|+.|++.|+++++.+++.+ ++++++|+.+...  .||+++.+
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~  199 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence            4578999999999999999999976579999999999999999999998865 9999999998654  68876654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.13  E-value=2.5e-10  Score=95.17  Aligned_cols=75  Identities=8%  Similarity=-0.022  Sum_probs=63.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..++.+++++++|+.+..   ..||+++....
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~  117 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGS  117 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCC
Confidence            457899999999999999999985 3599999999999999999999888878999999997642   26776665544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.13  E-value=1.6e-10  Score=95.83  Aligned_cols=71  Identities=23%  Similarity=0.222  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      ..++ +|||||||+|.++..+++.+. +|+|+|+|+.+++.++++....+. +++++++|+.+.++   .||+|++.
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEE
Confidence            3456 999999999999999999876 999999999999999999887776 89999999988653   68877663

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.13  E-value=1.1e-10  Score=101.44  Aligned_cols=74  Identities=20%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~~v  236 (259)
                      ++.+|||||||+|..++.++.. +..+|+++|+|+.+++.++++++..++.+++++++|+.+..      ..||+|.+..
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~a  159 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVARA  159 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEES
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEECC
Confidence            5789999999999999999987 44599999999999999999999999878999999998753      3789777654


Q ss_pred             c
Q 025035          237 N  237 (259)
Q Consensus       237 ~  237 (259)
                      +
T Consensus       160 ~  160 (249)
T 3g89_A          160 V  160 (249)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.13  E-value=3e-10  Score=95.44  Aligned_cols=72  Identities=29%  Similarity=0.339  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++....+ .+++++++|+.+.+.   .||+|++...
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~  112 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDS  112 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCc
Confidence            468999999999999999999976 99999999999999999988776 479999999988653   6896665544

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.13  E-value=1.8e-10  Score=96.94  Aligned_cols=72  Identities=18%  Similarity=0.180  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~~  235 (259)
                      ++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++.+++++++|+.+++     ..||+|+..
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            46799999999999999999883 3499999999999999999999888878999999998743     156765544

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.13  E-value=2.1e-10  Score=104.34  Aligned_cols=73  Identities=22%  Similarity=0.292  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      ++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++.+ ++++++|+.+.++   .||+|.++.+
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~  142 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  142 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence            5789999999999999999999877999999995 9999999999888865 9999999998643   7898877654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.12  E-value=9.5e-11  Score=100.12  Aligned_cols=70  Identities=11%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--Cc---ceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--IL---TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~---~fdvv~~  234 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++++..+ .+++++++|+.+.  ++   .||+|++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEE
Confidence            467999999999999999988766699999999999999999988776 4799999999875  33   6887766

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.12  E-value=2e-10  Score=105.66  Aligned_cols=77  Identities=19%  Similarity=0.276  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|+++++.+++.+ ++++++|+.+.++  .||+|.++.+.|
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            4578999999999999999999987799999999 99999999999988854 9999999998654  799887766544


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       141 ~  141 (376)
T 3r0q_C          141 F  141 (376)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.11  E-value=1.4e-10  Score=99.60  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~~v  236 (259)
                      ++.+|||||||+|..++.++.. +..+|+|+|+|+.|++.|+++++..++.+++++++|+.+.+      ..||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            4689999999999999999964 33489999999999999999999888878999999987743      3688776544

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.11  E-value=1.6e-10  Score=98.46  Aligned_cols=72  Identities=17%  Similarity=0.233  Sum_probs=61.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC------CcceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ------ILTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~------~~~fdvv~~~  235 (259)
                      .+.+|||||||+|.++..+++.. ..+|+|||+|+.+++.|++++...++.+++++++|+.+.      ...||.+...
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            46799999999999999999874 348999999999999999999999988899999998773      2267765543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.11  E-value=4.4e-10  Score=97.13  Aligned_cols=71  Identities=18%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec--ccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE--RNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~--v~~h  239 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|+++..     +++++++|+.+.+.  .||+|++.  ++.|
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  123 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSLGRRFSAVTCMFSSIGH  123 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCCSCCEEEEEECTTGGGG
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCccCCcCEEEEcCchhhh
Confidence            468999999999999999999976 89999999999999998753     68999999998654  78977665  4445


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       124 ~  124 (263)
T 3pfg_A          124 L  124 (263)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.11  E-value=2e-10  Score=95.00  Aligned_cols=74  Identities=14%  Similarity=0.004  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC----cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI----LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~----~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+++++..++ .+++++++|+.+.+    ..||++..+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            45789999999999999999987  345999999999999999999998887 57999999987753    268876654


Q ss_pred             c
Q 025035          236 R  236 (259)
Q Consensus       236 v  236 (259)
                      .
T Consensus       101 ~  101 (197)
T 3eey_A          101 L  101 (197)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.10  E-value=2e-10  Score=97.17  Aligned_cols=62  Identities=18%  Similarity=0.274  Sum_probs=56.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|++++...++.+++++++|+.++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l  100 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL  100 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHH
Confidence            4679999999999999999987 3348999999999999999999988888899999999874

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.10  E-value=5.1e-10  Score=91.19  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=65.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC--cceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI--LTYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~--~~fdvv~~~v~~h  239 (259)
                      ++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...++.+  ++++++|+.+..  ..||+|+.....|
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  130 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPIR  130 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCST
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceEEEECCCcc
Confidence            57899999999999999999984 499999999999999999998888876  999999998743  2789877766655


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       131 ~  131 (194)
T 1dus_A          131 A  131 (194)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.10  E-value=4.1e-10  Score=93.70  Aligned_cols=74  Identities=16%  Similarity=0.071  Sum_probs=64.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~  237 (259)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.+++++...++.+++++++|+.+.+  ..||++.+..+
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~  141 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc
Confidence            4679999999999999999987 34599999999999999999999888877999999998865  37888776543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.10  E-value=2.2e-10  Score=99.65  Aligned_cols=72  Identities=17%  Similarity=0.016  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFICK  233 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv~  233 (259)
                      ..++.+|||||||+|.+++.+++.+. .+|+++|+++.+++.|+++++.+|+.+ |++.++|..+...   .||+|.
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv   95 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIV   95 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEE
Confidence            35678999999999999999999863 489999999999999999999999865 9999999988543   378543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.10  E-value=2.7e-10  Score=101.74  Aligned_cols=76  Identities=14%  Similarity=0.063  Sum_probs=62.0

Q ss_pred             ccCCCCCEEEEEccCcChhH-HHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEec
Q 025035          160 DKYLSSWSVLDIGTGNGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSE  235 (259)
Q Consensus       160 ~~~~~~~~VLDiGcG~G~~~-~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~  235 (259)
                      ....++.+|||||||+|.++ +.+++....+|+|+|+|+.|++.|++++++.|+.+++|+++|+.+++. .||+|+..
T Consensus       118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~  195 (298)
T 3fpf_A          118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVA  195 (298)
T ss_dssp             TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEEC
T ss_pred             cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEEC
Confidence            34567899999999998765 555664334999999999999999999998888779999999998654 78877643

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.09  E-value=6.9e-10  Score=98.73  Aligned_cols=78  Identities=22%  Similarity=0.325  Sum_probs=64.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-------CCcceEEEEecccCCC----c-----
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GFSCIKFLVMNISVQI----L-----  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-------~l~~i~~i~~D~~~~~----~-----  227 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++....       +..+++++++|+.+.+    +     
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            57899999999999999999876669999999999999999987654       3347999999998864    1     


Q ss_pred             ceeEEEecccCccc
Q 025035          228 TYFICKSERNEHYT  241 (259)
Q Consensus       228 ~fdvv~~~v~~h~~  241 (259)
                      .||+|++....|+.
T Consensus       114 ~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          114 CFDICSCQFVCHYS  127 (313)
T ss_dssp             CEEEEEEETCGGGG
T ss_pred             CEEEEEEecchhhc
Confidence            78988877777665

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.09  E-value=1.6e-10  Score=102.09  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=62.5

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC---cceEEEEecccCCCc--ceeEEE-ecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVMNISVQIL--TYFICK-SERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l---~~i~~i~~D~~~~~~--~fdvv~-~~v~~  238 (259)
                      +.+|||||||+|.++..+++.+. +|+|+|+|+.+++.|++++...++   .+++++++|+.++++  .||+|+ ...+.
T Consensus        83 ~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~~  161 (299)
T 3g2m_A           83 SGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGSI  161 (299)
T ss_dssp             CSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHHH
T ss_pred             CCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCccc
Confidence            55999999999999999999976 899999999999999999987764   479999999998754  788554 43434


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       162 ~~  163 (299)
T 3g2m_A          162 NE  163 (299)
T ss_dssp             TT
T ss_pred             cc
Confidence            43

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.09  E-value=2.4e-10  Score=95.51  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      ..++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.+++++      +++++++|+.+++.  .||+|++..+.|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v~~~~~l~  113 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAVWAHACLL  113 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEEEECSCGG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEEEecCchh
Confidence            34578999999999999999999876 9999999999999999976      46778888887653  789766654443


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      +
T Consensus       114 ~  114 (211)
T 3e23_A          114 H  114 (211)
T ss_dssp             G
T ss_pred             h
Confidence            3

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.09  E-value=4.7e-10  Score=94.96  Aligned_cols=76  Identities=17%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccC-cChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---C-cceeEEEeccc
Q 025035          163 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---I-LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~-~~fdvv~~~v~  237 (259)
                      .++.+|||+||| +|.++..+++.+..+|+|+|+|+.+++.|++++...++ +++++++|+...   + ..||+|+++..
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCC
Confidence            467899999999 99999999998334999999999999999999999988 899999996432   2 37898777654


Q ss_pred             Cc
Q 025035          238 EH  239 (259)
Q Consensus       238 ~h  239 (259)
                      .|
T Consensus       133 ~~  134 (230)
T 3evz_A          133 YY  134 (230)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.09  E-value=2.8e-10  Score=98.16  Aligned_cols=71  Identities=14%  Similarity=0.092  Sum_probs=61.7

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc---ceeEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL---TYFIC  232 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~---~fdvv  232 (259)
                      ..++.+|||||||+|.+++.+++.+. .+|+++|+++.+++.|+++++.+|+.+ |++.++|..+...   .||++
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~I   94 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTI   94 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEE
Confidence            34678999999999999999999863 489999999999999999999999864 9999999988543   47754

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.08  E-value=3.4e-10  Score=98.27  Aligned_cols=73  Identities=16%  Similarity=0.248  Sum_probs=64.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC-----cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI-----LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~-----~~fdvv~~~v  236 (259)
                      ++.+|||+|||+|.+++.+++++..+|+|+|+++.+++.|++++..+++. +++++++|+.+..     ..||+|+++.
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~np  127 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNP  127 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECC
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECC
Confidence            57899999999999999999986669999999999999999999998886 5999999998853     3788777653

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.08  E-value=3e-10  Score=97.58  Aligned_cols=75  Identities=21%  Similarity=0.251  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++....  .+++++++|+.+.++   .||+|++..+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHHH
Confidence            45789999999999999999997 55 9999999999999999987654  479999999998654   79976665444


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |+
T Consensus       131 ~~  132 (266)
T 3ujc_A          131 LA  132 (266)
T ss_dssp             GG
T ss_pred             Hh
Confidence            33

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.08  E-value=4.9e-10  Score=101.64  Aligned_cols=73  Identities=27%  Similarity=0.320  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdvv~~~v  236 (259)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++ .+++++++|+.+.++   .||+|+++.
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~  139 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW  139 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcC
Confidence            45789999999999999999999766999999997 99999999998887 479999999998643   689877665

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.07  E-value=3.2e-10  Score=97.47  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC-CCc--ceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV-QIL--TYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~-~~~--~fdvv~  233 (259)
                      .++.+|||||||+|.+++.+++.+ ..+|+++|+++.+++.|+++++.+|+.+ |++.++|..+ ++.  .||++.
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Iv   89 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVIT   89 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEE
Confidence            457799999999999999999986 3489999999999999999999999864 9999999975 332  477443

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.07  E-value=3.8e-10  Score=95.70  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec--ccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE--RNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~--v~~h  239 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....+. +++++++|+.+.+.  .||+|++.  ++.|
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCccccc
Confidence            568999999999999999999975 899999999999999999887776 79999999988654  78976665  4445


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       115 ~  115 (246)
T 1y8c_A          115 I  115 (246)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.07  E-value=2.5e-10  Score=101.16  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=66.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc-ceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL-TYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~-~fdvv~~~v~~h~  240 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++....+. .+++++++|+.+.++ .||+|+++...|+
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~vv~nlpy~~  105 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQI  105 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcEEEEecCccc
Confidence            3577999999999999999999865 999999999999999999876665 479999999988644 7888877665544


Q ss_pred             cc
Q 025035          241 TF  242 (259)
Q Consensus       241 ~~  242 (259)
                      ..
T Consensus       106 ~~  107 (285)
T 1zq9_A          106 SS  107 (285)
T ss_dssp             HH
T ss_pred             ch
Confidence            43

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.07  E-value=4.6e-10  Score=99.90  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=65.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCcceeEEEec-ccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYFICKSE-RNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fdvv~~~-v~~h  239 (259)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.|++++...++. +++++++|+.+.+..||+|++. +++|
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~~~~~l~~  167 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH  167 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEEEeChHHh
Confidence            35789999999999999999988 76 9999999999999999999888775 4999999999887789965544 4444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       168 ~  168 (318)
T 2fk8_A          168 F  168 (318)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.07  E-value=2.7e-10  Score=100.88  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=41.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG  211 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~  211 (259)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.||+.|++++...+
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhh
Confidence            46789999999999999999998 44599999999999999999876543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.07  E-value=4.9e-10  Score=93.10  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccCcChh-HHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-cc
Q 025035          163 LSSWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~-~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~  237 (259)
                      .++.+|||+|||+|.. ...+++.+. +|+|+|+|+.|++.+++++...+. +++++++|+.+.++   .||+|++. ++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEEEEcChH
Confidence            3578999999999998 445555555 999999999999999999877663 79999999988654   68976664 34


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       100 ~~~  102 (209)
T 2p8j_A          100 FHM  102 (209)
T ss_dssp             GGS
T ss_pred             HhC
Confidence            444

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.07  E-value=1.8e-10  Score=102.75  Aligned_cols=79  Identities=18%  Similarity=0.235  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccCccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNEHYT  241 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~~  241 (259)
                      .++.+|||||||+|.++..+++++. +|+|+|+++.+++.+++++...++.+++++++|+.+.+. .||+|+++...|..
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCTANIPYKIS  119 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEEEECCGGGH
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEEEcCCcccc
Confidence            3578999999999999999999865 999999999999999999887777789999999988655 78877776655544


Q ss_pred             c
Q 025035          242 F  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       120 ~  120 (299)
T 2h1r_A          120 S  120 (299)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.07  E-value=2.2e-10  Score=96.06  Aligned_cols=73  Identities=19%  Similarity=0.115  Sum_probs=61.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~~  241 (259)
                      ++.+|||||||+|.++..+++++. +|+|+|+|+.+++.++++..    .+++++++|+.+.+.  .||+|++..+.|..
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  119 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTIVSTYAFHHL  119 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEEEEESCGGGS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEEEECcchhcC
Confidence            578999999999999999999965 99999999999999999765    378999999998764  78866665544443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.07  E-value=4.1e-10  Score=91.09  Aligned_cols=74  Identities=15%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++ +..+|+|+|+|+.+++.+++++...++.+++++++|+.+...  .||+++....
T Consensus        34 ~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~  109 (183)
T 2yxd_A           34 NKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT  109 (183)
T ss_dssp             CTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc
Confidence            3577999999999999999999 455999999999999999999998888789999999987222  5776655443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.07  E-value=1.5e-10  Score=99.51  Aligned_cols=77  Identities=14%  Similarity=0.140  Sum_probs=61.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-----------------------------c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------S  213 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-----------------------------~  213 (259)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.+++++...+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            35679999999999999999988766899999999999999998765431                             0


Q ss_pred             ce-EEEEecccCCC-------cceeEEEecccCc
Q 025035          214 CI-KFLVMNISVQI-------LTYFICKSERNEH  239 (259)
Q Consensus       214 ~i-~~i~~D~~~~~-------~~fdvv~~~v~~h  239 (259)
                      ++ +++++|+.+..       ..||+|++..+.|
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~  168 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLD  168 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHH
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhh
Confidence            27 99999998742       3688766655544

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.06  E-value=2.5e-10  Score=95.77  Aligned_cols=79  Identities=16%  Similarity=0.030  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC--CCcceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV--QILTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~--~~~~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.+++.++.. +..+|+++|+|+.|++.+++++...|+. ++++  .|...  .+..||+++..-+.
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            55789999999999999999887 3349999999999999999999999986 5766  55544  34479988887777


Q ss_pred             ccccc
Q 025035          239 HYTFD  243 (259)
Q Consensus       239 h~~~D  243 (259)
                      |...+
T Consensus       126 HlL~~  130 (200)
T 3fzg_A          126 PVLKQ  130 (200)
T ss_dssp             HHHHH
T ss_pred             Hhhhh
Confidence            76544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.06  E-value=5.4e-10  Score=97.80  Aligned_cols=77  Identities=18%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCcceeEEEe-cccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYFICKS-ERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fdvv~~-~v~~h  239 (259)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.+++++...++. +++++++|+.+.+..||+|++ .+++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~~~~~l~~  141 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH  141 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEEEeCchhh
Confidence            35789999999999999999954 66 9999999999999999999887764 699999999887778886554 44555


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       142 ~  142 (287)
T 1kpg_A          142 F  142 (287)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.06  E-value=2.2e-10  Score=100.59  Aligned_cols=75  Identities=15%  Similarity=0.159  Sum_probs=55.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecc---cCCCcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI---SVQILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~---~~~~~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..|+++|. +|+|+|+|+.|++.|++++....+ ++.+...+.   ......||+|++..+.|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~~v-~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~  121 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADRCV-TIDLLDITAEIPKELAGHFDFVLNDRLIN  121 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSSCC-EEEECCTTSCCCGGGTTCCSEEEEESCGG
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhccc-eeeeeecccccccccCCCccEEEEhhhhH
Confidence            4578999999999999999999976 999999999999999998765421 344433333   12234788766654433

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.06  E-value=2.1e-10  Score=98.58  Aligned_cols=72  Identities=10%  Similarity=-0.006  Sum_probs=60.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdvv~~~  235 (259)
                      .++.+|||||||+|..+..+++.+..+|+|||+|+.+++.|++++...+. +++++.+|+...     ...||.++.+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~D  135 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYD  135 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEEC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEEe
Confidence            35789999999999999999988556899999999999999999987774 789999987653     2268876543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.06  E-value=3.9e-10  Score=93.52  Aligned_cols=70  Identities=19%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecc-cCcc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSER-NEHY  240 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v-~~h~  240 (259)
                      +.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.     .+++++++|+.+.++   .||+|++.. +.|.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            67999999999999999999976 9999999999999999873     379999999988653   789666544 4444

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.06  E-value=3e-10  Score=100.85  Aligned_cols=78  Identities=21%  Similarity=0.145  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccCcChhHHHHH--hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la--~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..++  ..+..+|+|+|+|+.+++.|++++...++.+ ++++++|+.+.++  .||+|++..+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  196 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGL  196 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECCh
Confidence            567899999999999999995  3334599999999999999999998888754 9999999998764  7998777555


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|+
T Consensus       197 ~~~  199 (305)
T 3ocj_A          197 NIY  199 (305)
T ss_dssp             GGG
T ss_pred             hhh
Confidence            443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.05  E-value=6e-10  Score=97.90  Aligned_cols=75  Identities=9%  Similarity=-0.085  Sum_probs=64.4

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER  236 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v  236 (259)
                      ..++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|+++++.+++.++.++++|+.+.+  ..||+++.+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~  194 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGY  194 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECC
Confidence            456789999999999999999998 34599999999999999999999999888999999998863  2677665543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.05  E-value=4.3e-10  Score=102.26  Aligned_cols=74  Identities=22%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC--cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI--LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~--~~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ +++.|+++++.+++ .+++++++|+.+.+  ..||+|++...
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~  125 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPM  125 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCC
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCc
Confidence            35789999999999999999998777999999997 89999999988887 46999999999864  37998777654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.04  E-value=9.5e-10  Score=93.32  Aligned_cols=74  Identities=24%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec--ccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE--RNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~--v~~h  239 (259)
                      ++.+|||+|||+|.++..+++.  .+|+|+|+|+.+++.|++++...+ .+++++++|+.+.+.  .||+|++.  ++.|
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~  109 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELPEPVDAITILCDSLNY  109 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCSSCEEEEEECTTGGGG
T ss_pred             CCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCCCCcCEEEEeCCchhh
Confidence            4689999999999999999988  499999999999999999988766 379999999988654  78877654  4444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       110 ~  110 (243)
T 3d2l_A          110 L  110 (243)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.04  E-value=6.3e-10  Score=98.57  Aligned_cols=72  Identities=24%  Similarity=0.207  Sum_probs=62.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC-cce---eEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI-LTY---FICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~-~~f---dvv~~~  235 (259)
                      ++.+|||+|||+|.+++.+++.+..+|+|+|+|+.+++.|+++++.+++.+ ++|+++|+.+.. ..|   |+|.++
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence            467999999999999999998833499999999999999999999998865 999999998842 367   877775

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.03  E-value=5.3e-10  Score=99.05  Aligned_cols=75  Identities=9%  Similarity=-0.078  Sum_probs=65.1

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEec
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ...++.+|||+|||+|.+++.++++|..+|+++|+|+.+++.+++|++.+++.+ ++++++|+.+...  .||.|..+
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~  199 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence            345689999999999999999999987799999999999999999999999865 9999999988644  57755543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.03  E-value=6.8e-10  Score=94.24  Aligned_cols=74  Identities=22%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.++++...   .+++++++|+.+.+.   .||+|++..+.|+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  119 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALHY  119 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGGG
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEeccccc
Confidence            5789999999999999999998766999999999999999987643   268999999988654   6897666555443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.03  E-value=8.9e-10  Score=101.68  Aligned_cols=75  Identities=20%  Similarity=0.267  Sum_probs=66.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..+++++. +|+|+|+|+.+++.|++++..+++ +++++++|+.+...   .||+|+++...|.
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEALTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhccccCCCeEEEEECCchhh
Confidence            578999999999999999999976 999999999999999999998887 59999999998643   7998888777665

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.03  E-value=7.4e-10  Score=95.39  Aligned_cols=61  Identities=25%  Similarity=0.237  Sum_probs=54.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhc--------CCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRD--------GFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~--------~l~~i~~i~~D~~~  224 (259)
                      ++.+|||||||+|.++..+++.+. .+|+|||+|+.+++.++++++..        ++.+++++++|+.+
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~  118 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMK  118 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHH
Confidence            567999999999999999999854 38999999999999999998765        77789999999987

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.03  E-value=9.7e-10  Score=102.22  Aligned_cols=75  Identities=11%  Similarity=0.098  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHh-------HhcCC--cceEEEEecccCCCc-----
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVMNISVQIL-----  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~-------~~~~l--~~i~~i~~D~~~~~~-----  227 (259)
                      .++.+|||||||+|.+++.++.. |..+|+|||+|+.+++.|+++.       +..|+  .+|+|+++|+.++++     
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~~  251 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  251 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCccccccC
Confidence            56789999999999999999875 6656999999999999998864       33454  479999999999764     


Q ss_pred             ceeEEEeccc
Q 025035          228 TYFICKSERN  237 (259)
Q Consensus       228 ~fdvv~~~v~  237 (259)
                      .+|+|+.+..
T Consensus       252 ~aDVVf~Nn~  261 (438)
T 3uwp_A          252 NTSVIFVNNF  261 (438)
T ss_dssp             TCSEEEECCT
T ss_pred             CccEEEEccc
Confidence            5777766543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.02  E-value=1.1e-09  Score=92.66  Aligned_cols=73  Identities=16%  Similarity=0.123  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----C--cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----I--LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~--~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.++++..  .++.++++|+...    +  ..||++++.
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            35789999999999999999987 3348999999999998887776654  3789999998763    2  378887776


Q ss_pred             cc
Q 025035          236 RN  237 (259)
Q Consensus       236 v~  237 (259)
                      +.
T Consensus       134 ~~  135 (210)
T 1nt2_A          134 IA  135 (210)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.02  E-value=8e-10  Score=96.53  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.     .+++++++|+.++++  .||+|++..+.|.
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  129 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLDAVFSNAMLHW  129 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEEEEEEESCGGG
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcCEEEEcchhhh
Confidence            3578999999999999999999654 9999999999999999875     378999999998654  7897766665554


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      .
T Consensus       130 ~  130 (279)
T 3ccf_A          130 V  130 (279)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.02  E-value=1.2e-09  Score=91.52  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-C-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.+ . .+|+++|+|+.+++.++++....++.+++++++|+....   ..||+|+....
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence            457899999999999999999984 2 499999999999999999998888778999999986532   27887766655


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       156 ~~~  158 (215)
T 2yxe_A          156 GPK  158 (215)
T ss_dssp             BSS
T ss_pred             hHH
Confidence            443

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.02  E-value=1.1e-09  Score=98.74  Aligned_cols=73  Identities=34%  Similarity=0.411  Sum_probs=63.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      ++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|+++++.+++. +++++++|+.+.+.   .||+|.++.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            478999999999999999999887799999999 5999999999988875 59999999988643   6898877644

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.02  E-value=8.8e-10  Score=94.96  Aligned_cols=71  Identities=24%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh------cCCcceEEEEecccC-CC-----ccee
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVMNISV-QI-----LTYF  230 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~------~~l~~i~~i~~D~~~-~~-----~~fd  230 (259)
                      ++.+|||||||+|.++..+++. +..+|+|||+|+.|++.|+++++.      .++.+++++++|+.+ ++     ..||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            4568999999999999999987 344899999999999999988754      456689999999987 32     2566


Q ss_pred             EEEe
Q 025035          231 ICKS  234 (259)
Q Consensus       231 vv~~  234 (259)
                      .++.
T Consensus       126 ~v~~  129 (235)
T 3ckk_A          126 KMFF  129 (235)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.01  E-value=2.2e-09  Score=90.80  Aligned_cols=71  Identities=20%  Similarity=0.174  Sum_probs=59.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEE-ec-ccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICK-SE-RNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~-~~-v~~h  239 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.     .+++++++|+.+.+.  .||+|+ .. ++.|
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  113 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSVGY  113 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGGGG
T ss_pred             CCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchHhh
Confidence            468999999999999999999866 8999999999999999864     368999999988654  788776 33 4444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       114 ~  114 (239)
T 3bxo_A          114 L  114 (239)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.01  E-value=1.3e-09  Score=97.71  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..+++.+.  .+|+|+|+|+.+++.|+++++..++.+++++++|+.+..   ..||+|++...
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~  153 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence            4578999999999999999998843  359999999999999999999888878999999998843   37897666554


Q ss_pred             Cc
Q 025035          238 EH  239 (259)
Q Consensus       238 ~h  239 (259)
                      .|
T Consensus       154 ~~  155 (317)
T 1dl5_A          154 VD  155 (317)
T ss_dssp             BS
T ss_pred             HH
Confidence            44

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.01  E-value=2.4e-10  Score=99.21  Aligned_cols=72  Identities=19%  Similarity=0.053  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.      +++|+++|+.+.++   .||+|++..+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            3578999999999999999998765 9999999999999876643      79999999998654   789766665544


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      +.
T Consensus       106 ~~  107 (261)
T 3ege_A          106 HF  107 (261)
T ss_dssp             GC
T ss_pred             hc
Confidence            33

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.01  E-value=1.1e-09  Score=95.90  Aligned_cols=73  Identities=25%  Similarity=0.329  Sum_probs=63.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v  236 (259)
                      ++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.++++++..++.+++++++|+.+..  ..||+|.++.
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~np  184 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNP  184 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECC
Confidence            5679999999999999999976 44599999999999999999999888878999999998743  3799887763

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.01  E-value=1.4e-09  Score=92.01  Aligned_cols=75  Identities=20%  Similarity=0.171  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-C--cceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-I--LTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~--~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++....+  +++++++|+.+. +  ..||+|+.....|
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCcHH
Confidence            357899999999999999999987 599999999999999999987766  799999999873 2  3789766655444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       146 ~  146 (231)
T 1vbf_A          146 T  146 (231)
T ss_dssp             S
T ss_pred             H
Confidence            3

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.00  E-value=5.5e-10  Score=97.08  Aligned_cols=75  Identities=25%  Similarity=0.311  Sum_probs=64.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--CcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--ILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~~~fdvv~~~v~~h  239 (259)
                      .++.+|||+|||+|.+++.+++.|. +|+|+|+|+.+++.+++++..+++. ++++++|+.+.  ...||++..+...|
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCcCCCCCEEEECCcHH
Confidence            4578999999999999999999987 9999999999999999999988875 99999998773  33788877765443

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.00  E-value=6e-10  Score=90.87  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h~~  241 (259)
                      ++.+|||+|||+|.++..+++++  +|+|+|+|+.|++.         ..+++++++|+.+..  ..||+|.++...|..
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~   91 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYVPD   91 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCBTT
T ss_pred             CCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCccC
Confidence            56799999999999999999987  99999999999987         236899999998743  378988777666543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.00  E-value=1e-09  Score=88.73  Aligned_cols=76  Identities=17%  Similarity=0.012  Sum_probs=60.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-C---cceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-I---LTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~---~~fdvv~~~v  236 (259)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++. ++ ++++|+.+. +   ..||+++...
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            35679999999999999999988 3459999999999999999999988886 68 888888552 1   3577666544


Q ss_pred             cCc
Q 025035          237 NEH  239 (259)
Q Consensus       237 ~~h  239 (259)
                      ..|
T Consensus       103 ~~~  105 (178)
T 3hm2_A          103 GLT  105 (178)
T ss_dssp             -TT
T ss_pred             ccc
Confidence            443

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.00  E-value=1.3e-09  Score=93.82  Aligned_cols=76  Identities=17%  Similarity=0.190  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC-----CC----cceeEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV-----QI----LTYFIC  232 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~-----~~----~~fdvv  232 (259)
                      ++.+|||+|||+|.++..++++ +..+|+|+|+|+.|++.|+++++..++.+ ++++++|+.+     .+    ..||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4679999999999999999876 23499999999999999999999888864 9999999654     12    258887


Q ss_pred             EecccCc
Q 025035          233 KSERNEH  239 (259)
Q Consensus       233 ~~~v~~h  239 (259)
                      +++...|
T Consensus       145 ~~npp~~  151 (254)
T 2h00_A          145 MCNPPFF  151 (254)
T ss_dssp             EECCCCC
T ss_pred             EECCCCc
Confidence            7764443

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.99  E-value=4.8e-10  Score=103.45  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-------cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-------LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-------~~fdvv~  233 (259)
                      .++.+|||+|||+|.+++.+++.|..+|+|+|+|+.|++.|+++++.+++.  +++|+++|+.+..       ..||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            567899999999999999999987779999999999999999999999986  7999999997721       2688766


Q ss_pred             ec
Q 025035          234 SE  235 (259)
Q Consensus       234 ~~  235 (259)
                      .+
T Consensus       291 ~D  292 (385)
T 2b78_A          291 ID  292 (385)
T ss_dssp             EC
T ss_pred             EC
Confidence            53

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.99  E-value=1.6e-09  Score=92.23  Aligned_cols=69  Identities=7%  Similarity=0.047  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC----CCc--ceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV----QIL--TYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~----~~~--~fdvv~  233 (259)
                      .++.+|||+|||+|.++..+++. |..+|+|+|+|+.|++.++++++..  .++.++++|+.+    .++  .||+++
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~  148 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEEE
Confidence            35789999999999999999988 5459999999999999999988655  589999999987    332  577765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.99  E-value=1.5e-09  Score=93.12  Aligned_cols=75  Identities=16%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.++++     ..+++++++|+.+.+  ..||+|++....|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  106 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKPAQKADLLYANAVFQ  106 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCccCCcCEEEEeCchh
Confidence            35679999999999999999988 234999999999999999987     247999999998864  3789777766555


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      +..
T Consensus       107 ~~~  109 (259)
T 2p35_A          107 WVP  109 (259)
T ss_dssp             GST
T ss_pred             hCC
Confidence            543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.98  E-value=2.7e-09  Score=90.19  Aligned_cols=75  Identities=16%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----C-----ccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----I-----LTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~-----~~fd  230 (259)
                      .++.+|||||||+|..+..+++.  ...+|+++|+|+.+++.|+++++..++. +++++++|+.+.    .     ..||
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD  136 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  136 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceE
Confidence            46789999999999999999985  2349999999999999999999998886 499999997552    2     3688


Q ss_pred             EEEeccc
Q 025035          231 ICKSERN  237 (259)
Q Consensus       231 vv~~~v~  237 (259)
                      +|+....
T Consensus       137 ~V~~d~~  143 (221)
T 3u81_A          137 MVFLDHW  143 (221)
T ss_dssp             EEEECSC
T ss_pred             EEEEcCC
Confidence            7765543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.98  E-value=2.2e-09  Score=91.74  Aligned_cols=74  Identities=18%  Similarity=0.148  Sum_probs=62.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-C----cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-I----LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~----~~fdvv~~~  235 (259)
                      .++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|+++++..++. +++++++|+.+. +    ..||+|+..
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            357899999999999999999852 459999999999999999999998885 699999999774 2    378876644


Q ss_pred             c
Q 025035          236 R  236 (259)
Q Consensus       236 v  236 (259)
                      .
T Consensus       150 ~  150 (232)
T 3ntv_A          150 A  150 (232)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.98  E-value=2.7e-09  Score=90.18  Aligned_cols=77  Identities=18%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC------CcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCCC-----
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQI-----  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~------~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~~-----  226 (259)
                      .++.+|||||||+|.++..+++...      .+|+++|+++.+++.|++++...+     ..+++++++|+.+..     
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  158 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKK  158 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCc
Confidence            4578999999999999999998742      489999999999999999998877     457999999998854     


Q ss_pred             --cceeEEEecccCc
Q 025035          227 --LTYFICKSERNEH  239 (259)
Q Consensus       227 --~~fdvv~~~v~~h  239 (259)
                        ..||+|+.....|
T Consensus       159 ~~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          159 ELGLFDAIHVGASAS  173 (227)
T ss_dssp             HHCCEEEEEECSBBS
T ss_pred             cCCCcCEEEECCchH
Confidence              2688776655444

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.98  E-value=2.3e-09  Score=106.85  Aligned_cols=79  Identities=23%  Similarity=0.174  Sum_probs=64.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHh------cCCcceEEEEecccCCCc---ceeEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVMNISVQIL---TYFIC  232 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~------~~l~~i~~i~~D~~~~~~---~fdvv  232 (259)
                      ++.+|||||||+|.++..|++.+.  .+|+|+|+|+.|++.|++++..      .++.+++|+++|+.++++   .||+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            578999999999999999999862  4999999999999999986653      355689999999998765   78854


Q ss_pred             E-ecccCcccc
Q 025035          233 K-SERNEHYTF  242 (259)
Q Consensus       233 ~-~~v~~h~~~  242 (259)
                      + ..+++|+..
T Consensus       801 V~~eVLeHL~d  811 (950)
T 3htx_A          801 TCLEVIEHMEE  811 (950)
T ss_dssp             EEESCGGGSCH
T ss_pred             EEeCchhhCCh
Confidence            4 445566554

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.98  E-value=1.7e-09  Score=91.73  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=56.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CC----cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QI----LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~----~~fdvv~~~  235 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++     ..+++++++|+.+ ++    ..||+|++.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            3578999999999999999999965 999999999999999987     2479999999954 33    267876654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.98  E-value=2.8e-10  Score=97.17  Aligned_cols=70  Identities=24%  Similarity=0.271  Sum_probs=56.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC--C---cceeEEEe-cc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ--I---LTYFICKS-ER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~--~---~~fdvv~~-~v  236 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++        ++++++|+.+.  +   ..||+|++ .+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~~  110 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISHF  110 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence            4578999999999999999999876 899999999999999874        78888888763  2   37886554 44


Q ss_pred             cCccc
Q 025035          237 NEHYT  241 (259)
Q Consensus       237 ~~h~~  241 (259)
                      ++|..
T Consensus       111 l~~~~  115 (240)
T 3dli_A          111 VEHLD  115 (240)
T ss_dssp             GGGSC
T ss_pred             hhhCC
Confidence            45554

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.98  E-value=1.1e-09  Score=91.50  Aligned_cols=69  Identities=22%  Similarity=0.317  Sum_probs=57.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---Cc----ceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---IL----TYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~~----~fdvv~~~v  236 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++      .++.++++|+.+.   +.    .||+|++..
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~  124 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICANF  124 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEECc
Confidence            468999999999999999999976 999999999999999986      2577888877765   21    499877766


Q ss_pred             cCc
Q 025035          237 NEH  239 (259)
Q Consensus       237 ~~h  239 (259)
                      +.|
T Consensus       125 ~l~  127 (227)
T 3e8s_A          125 ALL  127 (227)
T ss_dssp             CCC
T ss_pred             hhh
Confidence            665

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.97  E-value=1.4e-09  Score=88.47  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccC-CC--cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISV-QI--LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~-~~--~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...++ .+++++++|+.+ .+  ..||+++....
T Consensus        32 ~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~  109 (192)
T 1l3i_A           32 GKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS  109 (192)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCc
Confidence            457899999999999999999987 6999999999999999999988887 579999999876 22  36887766544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.97  E-value=1.1e-09  Score=103.97  Aligned_cols=74  Identities=22%  Similarity=0.209  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC--cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI--LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~--~~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.+++.+++.|..+|+|+|+|+ +++.|+++++.+++ .+++++++|+.+.+  ..||+|+++.+
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~  233 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPM  233 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCC
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCc
Confidence            35789999999999999999998767999999999 99999999998888 46999999999853  47998887655

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.97  E-value=1.5e-09  Score=94.55  Aligned_cols=73  Identities=15%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHh---cCCc-ceEEEEecccCC----------Cc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR---DGFS-CIKFLVMNISVQ----------IL  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~---~~l~-~i~~i~~D~~~~----------~~  227 (259)
                      .++.+|||+|||+|.+++.++++. ..+|+|+|+++.+++.|++++..   +++. +++++++|+.+.          ..
T Consensus        35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~  114 (260)
T 2ozv_A           35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE  114 (260)
T ss_dssp             CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred             cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence            356799999999999999999984 34999999999999999999988   7775 499999999886          23


Q ss_pred             ceeEEEec
Q 025035          228 TYFICKSE  235 (259)
Q Consensus       228 ~fdvv~~~  235 (259)
                      .||+|.++
T Consensus       115 ~fD~Vv~n  122 (260)
T 2ozv_A          115 HFHHVIMN  122 (260)
T ss_dssp             CEEEEEEC
T ss_pred             CcCEEEEC
Confidence            68887776

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.97  E-value=1.7e-09  Score=99.38  Aligned_cols=81  Identities=25%  Similarity=0.265  Sum_probs=65.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc-----C-C--cceEEEEecccCC------C
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-----G-F--SCIKFLVMNISVQ------I  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~-----~-l--~~i~~i~~D~~~~------~  226 (259)
                      .++.+|||||||+|.++..+++.  ...+|+|+|+|+.+++.|+++++..     | +  .+++|+++|+.++      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            35789999999999999999986  2349999999999999999987654     3 2  4799999999875      3


Q ss_pred             c---ceeEEEecccCccccc
Q 025035          227 L---TYFICKSERNEHYTFD  243 (259)
Q Consensus       227 ~---~fdvv~~~v~~h~~~D  243 (259)
                      +   .||+|++..+.|...|
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d  181 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTN  181 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSC
T ss_pred             CCCCCEEEEEEccchhcCCC
Confidence            3   7998777766665433

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.97  E-value=3.1e-10  Score=97.16  Aligned_cols=64  Identities=19%  Similarity=0.317  Sum_probs=54.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCC-HHHHHHH---HHHhHhcCCcceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYS-EDAINLA---QSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S-~~~i~~a---~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      ++.+|||||||+|.++..++++ +..+|+|+|+| +.|++.|   ++++...++.++.|+++|+.+++.
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~   92 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF   92 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh
Confidence            5679999999999999999965 23489999999 7777776   877777888789999999998765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.97  E-value=2.4e-09  Score=91.37  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-Cc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-IL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-~~--~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+..+|+++|+++.+++.|++++...++.+++++++|+... +.  .||+|+.....|
T Consensus        90 ~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A           90 KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGAP  169 (235)
T ss_dssp             CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBBS
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCccEEEECCcHH
Confidence            467799999999999999999984259999999999999999999988887899999997432 21  488766655443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.96  E-value=9.7e-10  Score=95.36  Aligned_cols=77  Identities=17%  Similarity=0.183  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHH------HHHHHHHHhHhcCC-cceEEEEec-c--cCCC---c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSED------AINLAQSLANRDGF-SCIKFLVMN-I--SVQI---L  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~------~i~~a~~~~~~~~l-~~i~~i~~D-~--~~~~---~  227 (259)
                      .++.+|||||||+|.++..++++ |. .+|+|+|+|+.      +++.|++++...++ .+++++++| +  ..++   .
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            45789999999999999999998 43 49999999997      99999999988777 469999998 3  3322   3


Q ss_pred             ceeEEEecccCc
Q 025035          228 TYFICKSERNEH  239 (259)
Q Consensus       228 ~fdvv~~~v~~h  239 (259)
                      .||+|++..+.|
T Consensus       122 ~fD~v~~~~~l~  133 (275)
T 3bkx_A          122 HFDRVVLAHSLW  133 (275)
T ss_dssp             CCSEEEEESCGG
T ss_pred             CEEEEEEccchh
Confidence            688666544443

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.96  E-value=8.1e-10  Score=98.66  Aligned_cols=78  Identities=18%  Similarity=0.194  Sum_probs=65.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..|++++. +|+|+|+++.+++.+++++..  ..+++++++|+.+.++   .||+|+++...|
T Consensus        49 ~~~~~VLEIG~G~G~lT~~La~~~~-~V~aVEid~~li~~a~~~~~~--~~~v~vi~gD~l~~~~~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A           49 TKDDVVLEIGLGKGILTEELAKNAK-KVYVIEIDKSLEPYANKLKEL--YNNIEIIWGDALKVDLNKLDFNKVVANLPYQ  125 (295)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCGGGHHHHHHHHHH--CSSEEEEESCTTTSCGGGSCCSEEEEECCGG
T ss_pred             CCcCEEEEECCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHhcc--CCCeEEEECchhhCCcccCCccEEEEeCccc
Confidence            3578999999999999999999854 999999999999999998873  3479999999998654   488888777666


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      +...
T Consensus       126 is~p  129 (295)
T 3gru_A          126 ISSP  129 (295)
T ss_dssp             GHHH
T ss_pred             ccHH
Confidence            5544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.96  E-value=2.3e-09  Score=98.70  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc---ceEEEEecccCCCc--ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~---~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.+++++..+++.   +++|+++|+.+...  .||+|+++..
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~~fD~Ii~npp  301 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPP  301 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTTCEEEEEECCC
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCCCeeEEEECCC
Confidence            34799999999999999999984 459999999999999999999988864   58999999988433  7998887766


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       302 fh~  304 (375)
T 4dcm_A          302 FHQ  304 (375)
T ss_dssp             C--
T ss_pred             ccc
Confidence            654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.95  E-value=4.5e-09  Score=87.55  Aligned_cols=69  Identities=17%  Similarity=0.259  Sum_probs=56.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+   +..+|+|+|+|+.+++.++++.     .+++++++|+.++++   .||+|++..+.|+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEF  107 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhh
Confidence            5789999999999999887   4458999999999999999876     368999999988654   6896655544443

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.95  E-value=1.2e-09  Score=92.11  Aligned_cols=72  Identities=21%  Similarity=0.208  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC---------ccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI---------LTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~---------~~fd  230 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..++.+ ++++++|+.+..         ..||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            45789999999999999999987 2 4599999999999999999999888864 999999986631         4688


Q ss_pred             EEEe
Q 025035          231 ICKS  234 (259)
Q Consensus       231 vv~~  234 (259)
                      +|+.
T Consensus       143 ~v~~  146 (225)
T 3tr6_A          143 LIYI  146 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7664

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.95  E-value=1.5e-09  Score=87.42  Aligned_cols=73  Identities=16%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYT  241 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~  241 (259)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++     ..+++++++|.......||+|++..+.|..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~   88 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDPKEIPDNSVDFILFANSFHDM   88 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSGGGSCTTCEEEEEEESCSTTC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCCCCCCCCceEEEEEccchhcc
Confidence            3567999999999999999999876 999999999999999987     347999999922223379976665555443

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.94  E-value=9.7e-10  Score=95.03  Aligned_cols=72  Identities=11%  Similarity=0.048  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-C-----cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-I-----LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~-----~~fdvv~  233 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..++. +++++++|+.+. +     ..||+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            46789999999999999999987 2 459999999999999999999998886 699999998762 1     1677665


Q ss_pred             e
Q 025035          234 S  234 (259)
Q Consensus       234 ~  234 (259)
                      .
T Consensus       142 ~  142 (248)
T 3tfw_A          142 I  142 (248)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.94  E-value=3.2e-09  Score=91.69  Aligned_cols=75  Identities=11%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. |. .+|+|+|+|+.|++.+++++++.  .|+..+.+|.....      ..+|+++.
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEEE
Confidence            57899999999999999999997 44 48999999999999999988755  37899999887632      26777766


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      .+..|
T Consensus       154 d~~~~  158 (233)
T 4df3_A          154 DVAQP  158 (233)
T ss_dssp             CCCCT
T ss_pred             eccCC
Confidence            54443

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.94  E-value=2.4e-09  Score=98.27  Aligned_cols=75  Identities=24%  Similarity=0.243  Sum_probs=65.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.+++.++..+. .+|+|+|+|+.|++.|++++...|+ .+++++++|+.+.+.   .||+|+++..
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npP  295 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLP  295 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCC
Confidence            5678999999999999999999864 3899999999999999999999998 469999999998654   6887766543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.94  E-value=1.6e-09  Score=100.07  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-c-ceEEEEecccCCC-------cceeE
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-S-CIKFLVMNISVQI-------LTYFI  231 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~-~i~~i~~D~~~~~-------~~fdv  231 (259)
                      ...++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++++.+++ . +++|+++|+.+..       ..||+
T Consensus       217 ~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          217 RYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             HHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            3357889999999999999999998767999999999999999999999998 6 7999999998742       36887


Q ss_pred             EEec
Q 025035          232 CKSE  235 (259)
Q Consensus       232 v~~~  235 (259)
                      |+.+
T Consensus       297 Ii~d  300 (396)
T 3c0k_A          297 IVMD  300 (396)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.94  E-value=7.6e-10  Score=93.32  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC--------cceeE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI--------LTYFI  231 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~--------~~fdv  231 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|++++...++.+ ++++++|+.+..        ..||+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            46789999999999999999997 2 3499999999999999999999888865 999999997631        24777


Q ss_pred             EEecc
Q 025035          232 CKSER  236 (259)
Q Consensus       232 v~~~v  236 (259)
                      |+...
T Consensus       137 v~~d~  141 (223)
T 3duw_A          137 IFIDA  141 (223)
T ss_dssp             EEECS
T ss_pred             EEEcC
Confidence            66443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.93  E-value=3.3e-09  Score=91.15  Aligned_cols=74  Identities=19%  Similarity=0.155  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v  236 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++..++.+ ++++++|+.+...  .||+++.+.
T Consensus        92 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  170 (255)
T 3mb5_A           92 SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL  170 (255)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred             CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence            45789999999999999999998 4 4599999999999999999999888866 9999999987532  588776543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.93  E-value=3.1e-09  Score=93.65  Aligned_cols=76  Identities=16%  Similarity=0.184  Sum_probs=56.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeC-CHHHHHHHHHHh-----HhcCCc-----ceEEEEecccCC-------
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY-SEDAINLAQSLA-----NRDGFS-----CIKFLVMNISVQ-------  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~-S~~~i~~a~~~~-----~~~~l~-----~i~~i~~D~~~~-------  225 (259)
                      ++.+|||||||+|.+++.+++.|..+|+|+|+ |+.+++.|++++     +..++.     +++++..++.+.       
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  158 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQRC  158 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHhh
Confidence            57799999999999999999987669999999 899999999999     555543     688887665542       


Q ss_pred             --CcceeEEEe-cccCc
Q 025035          226 --ILTYFICKS-ERNEH  239 (259)
Q Consensus       226 --~~~fdvv~~-~v~~h  239 (259)
                        ...||+|+. +++.|
T Consensus       159 ~~~~~fD~Ii~~dvl~~  175 (281)
T 3bzb_A          159 TGLQRFQVVLLADLLSF  175 (281)
T ss_dssp             HSCSSBSEEEEESCCSC
T ss_pred             ccCCCCCEEEEeCcccC
Confidence              236886654 55444

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.93  E-value=1.4e-09  Score=92.86  Aligned_cols=71  Identities=18%  Similarity=0.193  Sum_probs=60.1

Q ss_pred             CEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC-----CcceeEEEecc
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ-----ILTYFICKSER  236 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~-----~~~fdvv~~~v  236 (259)
                      .+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..|+.  +++++++|+.+.     ...||+|+...
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~  137 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV  137 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence            39999999999999999985 2 359999999999999999999998886  699999998763     23788776543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.92  E-value=1.5e-09  Score=98.41  Aligned_cols=71  Identities=24%  Similarity=0.241  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC-------cceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI-------LTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~-------~~fdvv~~  234 (259)
                      ++.+|||+|||+|.+++.+++.|. +|+++|+|+.+++.|+++++.+++.+  ++++++|+.+..       ..||+|+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~  231 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  231 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEE
Confidence            467999999999999999999887 99999999999999999999888864  999999998742       26787655


Q ss_pred             c
Q 025035          235 E  235 (259)
Q Consensus       235 ~  235 (259)
                      +
T Consensus       232 d  232 (332)
T 2igt_A          232 D  232 (332)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.92  E-value=3.2e-10  Score=94.05  Aligned_cols=75  Identities=24%  Similarity=0.256  Sum_probs=45.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-------~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.+++.|++++...++ +++++++|+.+..       ..||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            3578999999999999999999843 3999999999999999999988877 8999999988721       46887777


Q ss_pred             cccC
Q 025035          235 ERNE  238 (259)
Q Consensus       235 ~v~~  238 (259)
                      +...
T Consensus       108 npp~  111 (215)
T 4dzr_A          108 NPPY  111 (215)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5443

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.92  E-value=4.9e-09  Score=85.38  Aligned_cols=67  Identities=28%  Similarity=0.352  Sum_probs=57.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.+++.++++..     +++++++|+.+.+.   .||+|+..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCCCCCceeEEEEC
Confidence            3578999999999999999999865 99999999999999998753     58999999988643   68877764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.92  E-value=2.4e-09  Score=98.75  Aligned_cols=77  Identities=25%  Similarity=0.285  Sum_probs=65.7

Q ss_pred             hccCC-CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC-------cce
Q 025035          159 NDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI-------LTY  229 (259)
Q Consensus       159 l~~~~-~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~-------~~f  229 (259)
                      +.... ++.+|||+|||+|.+++.+++.|..+|+|+|+|+.+++.|+++++.+++. +++|+++|+.+..       ..|
T Consensus       211 ~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          211 LEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             HGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCC
Confidence            33444 78899999999999999999987779999999999999999999999987 7999999997742       368


Q ss_pred             eEEEec
Q 025035          230 FICKSE  235 (259)
Q Consensus       230 dvv~~~  235 (259)
                      |+|+.+
T Consensus       291 D~Vi~d  296 (396)
T 2as0_A          291 DIVVLD  296 (396)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            876654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.91  E-value=4.8e-09  Score=89.24  Aligned_cols=73  Identities=15%  Similarity=0.108  Sum_probs=59.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. | ..+|+|+|+|+.|++.+.++++..  .+++++++|+.+..      ..||+|++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            35789999999999999999987 3 359999999999999888888765  47999999998732      26887776


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       154 ~~~  156 (233)
T 2ipx_A          154 DVA  156 (233)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.91  E-value=9.2e-09  Score=90.60  Aligned_cols=80  Identities=18%  Similarity=0.150  Sum_probs=54.9

Q ss_pred             CCCEEEEEccCcChhHHHH----Hhc-CCCcE--EEEeCCHHHHHHHHHHhHhc-CCcce--EEEEecccCC--------
Q 025035          164 SSWSVLDIGTGNGLLLQEL----SKQ-GFSDL--TGVDYSEDAINLAQSLANRD-GFSCI--KFLVMNISVQ--------  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~l----a~~-g~~~V--~giD~S~~~i~~a~~~~~~~-~l~~i--~~i~~D~~~~--------  225 (259)
                      ++.+|||||||+|.++..+    +.+ +...|  +|+|+|+.|++.|++++... ++.++  .+.++++.+.        
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            4679999999999866533    333 22234  99999999999999988654 45455  4456665442        


Q ss_pred             -CcceeEEEecccCccccc
Q 025035          226 -ILTYFICKSERNEHYTFD  243 (259)
Q Consensus       226 -~~~fdvv~~~v~~h~~~D  243 (259)
                       ...||+|.+..+.|+..|
T Consensus       132 ~~~~fD~V~~~~~l~~~~d  150 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYVKD  150 (292)
T ss_dssp             CCCCEEEEEEESCGGGCSC
T ss_pred             CCCceeEEEEeeeeeecCC
Confidence             247997777766665554

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.90  E-value=4.2e-09  Score=98.56  Aligned_cols=72  Identities=19%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-------cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-------LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-------~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.+++.+ .+|+|+|+|+.+++.|+++++.+++.+++|+++|+.+..       ..||++..+
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCEEEECCCCCCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            356799999999999999999984 499999999999999999999999888999999998831       157776654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=98.90  E-value=9.7e-09  Score=86.63  Aligned_cols=76  Identities=16%  Similarity=0.280  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCCCc---ceeEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQIL---TYFIC  232 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~~~---~fdvv  232 (259)
                      .++.+|||||||+|..+..+++. +. .+|+++|+|+.+++.+++++...+     ..+++++++|+.....   .||+|
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  155 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAI  155 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEE
Confidence            45789999999999999999987 43 399999999999999999988765     3479999999986432   68877


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.....
T Consensus       156 ~~~~~~  161 (226)
T 1i1n_A          156 HVGAAA  161 (226)
T ss_dssp             EECSBB
T ss_pred             EECCch
Confidence            655443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.90  E-value=4.3e-09  Score=95.29  Aligned_cols=71  Identities=14%  Similarity=0.058  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++. ++ +..+|+|+|+|+.+++.|+++++.+++ .+++++++|+.+....||+++.+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence            4678999999999999999 87 566999999999999999999999988 46999999999876678876665

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.88  E-value=1.1e-09  Score=92.10  Aligned_cols=65  Identities=17%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHH----hHhcCCcceEEEEecccCCCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSL----ANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~----~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.+.++    ....++.+++|+++|+.++++
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~   95 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPP   95 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCS
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCC
Confidence            357899999999999999999983 34999999999988864333    334566689999999999765

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.88  E-value=4.5e-09  Score=96.36  Aligned_cols=74  Identities=15%  Similarity=0.226  Sum_probs=64.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC-CCc----ceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV-QIL----TYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~-~~~----~fdvv~~~v~  237 (259)
                      ++.+|||+| |+|.+++.+++.+. .+|+|+|+|+.|++.|+++++..|+.+++++++|+.+ ++.    .||+|+.+..
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p  250 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP  250 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence            578999999 99999999998865 6999999999999999999998888789999999998 543    6898777644


Q ss_pred             C
Q 025035          238 E  238 (259)
Q Consensus       238 ~  238 (259)
                      .
T Consensus       251 ~  251 (373)
T 2qm3_A          251 E  251 (373)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.88  E-value=6.5e-09  Score=90.99  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCCCc--ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.|+++++.. |..+++++++|+.+...  .||+++.+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEc
Confidence            45789999999999999999987  2349999999999999999999887 77689999999988422  58877653

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.88  E-value=5.5e-09  Score=91.30  Aligned_cols=62  Identities=19%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      .++.+|||||||+|.++..|++++ .+|+|+|+++.|++.+++++..  ..+++++++|+.+.++
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~   89 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDF   89 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCG
T ss_pred             CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCH
Confidence            357899999999999999999997 4999999999999999998865  3479999999998754

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.88  E-value=4e-09  Score=98.13  Aligned_cols=71  Identities=10%  Similarity=-0.019  Sum_probs=61.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--CCcceEEEEecccCC-C----cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVMNISVQ-I----LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~l~~i~~i~~D~~~~-~----~~fdvv~~~  235 (259)
                      ++.+|||+|||+|..+..+++.+. +|+++|+|+.|++.|+++++..  |+.+++++++|+.+. +    ..||+|+.+
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            378999999999999999998865 9999999999999999999988  877899999999884 2    267876654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.88  E-value=3.1e-09  Score=93.80  Aligned_cols=77  Identities=13%  Similarity=0.185  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~~~v~~  238 (259)
                      .++ +|||||||+|.++..|++++. +|+|+|+++.|++.+++++..   .+++++++|+.+.++    .++.|.++.-.
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~~-~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~~~~~iv~NlPy  120 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAGA-EVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVPQGSLLVANLPY  120 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSCTTEEEEEEECS
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhccCccEEEecCcc
Confidence            346 999999999999999999974 999999999999999998762   379999999998654    46777777766


Q ss_pred             ccccce
Q 025035          239 HYTFDL  244 (259)
Q Consensus       239 h~~~D~  244 (259)
                      ++..++
T Consensus       121 ~iss~i  126 (271)
T 3fut_A          121 HIATPL  126 (271)
T ss_dssp             SCCHHH
T ss_pred             cccHHH
Confidence            655443

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.87  E-value=8.1e-09  Score=87.28  Aligned_cols=73  Identities=14%  Similarity=0.169  Sum_probs=59.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC------CcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ------ILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~------~~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. | ..+|+|+|+|+.|++.++++++..  .+++++++|+.+.      ...||+++.
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            35789999999999999999987 4 259999999999999999988755  5799999999873      226887765


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      ...
T Consensus       150 ~~~  152 (227)
T 1g8a_A          150 DVA  152 (227)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            443

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.87  E-value=6e-09  Score=90.40  Aligned_cols=74  Identities=15%  Similarity=0.108  Sum_probs=63.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h  239 (259)
                      .++.+|||||||.|.++.++.  +..+++|+|+++.|++.+++++...+. +.++.++|....+.  .+|+++...+.|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~~~DvvLllk~lh  179 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAEAGDLALIFKLLP  179 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCCCcchHHHHHHHH
Confidence            457899999999999999988  556999999999999999999988884 89999999998544  889876654444

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.87  E-value=3.5e-09  Score=96.14  Aligned_cols=73  Identities=25%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.++..+  ..+|+|+|+++.|++.|+++++..|+.+++|+++|+.+++.   .||+++.+
T Consensus       202 ~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          202 RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence            467899999999999999999974  24999999999999999999999998789999999998643   56766654

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.87  E-value=5.9e-09  Score=91.49  Aligned_cols=73  Identities=14%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-------CcceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-------ILTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-------~~~fdvv~  233 (259)
                      .++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++++++.|+.+++++++|+.+.       ...||+|+
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl  161 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKIL  161 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEE
Confidence            46789999999999999999985  4359999999999999999999999988899999999874       23688766


Q ss_pred             ec
Q 025035          234 SE  235 (259)
Q Consensus       234 ~~  235 (259)
                      .+
T Consensus       162 ~d  163 (274)
T 3ajd_A          162 LD  163 (274)
T ss_dssp             EE
T ss_pred             Ec
Confidence            54

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.86  E-value=8.9e-09  Score=87.48  Aligned_cols=74  Identities=14%  Similarity=0.134  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC------CcceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ------ILTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~------~~~fdvv~~~  235 (259)
                      ++.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++...++. +++++++|+.+.      ...||+|+..
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            57899999999999999999872 359999999999999999999988875 599999999874      2468876654


Q ss_pred             cc
Q 025035          236 RN  237 (259)
Q Consensus       236 v~  237 (259)
                      ..
T Consensus       134 ~~  135 (233)
T 2gpy_A          134 AA  135 (233)
T ss_dssp             GG
T ss_pred             CC
Confidence            43

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.86  E-value=5.2e-09  Score=103.60  Aligned_cols=75  Identities=12%  Similarity=0.063  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC----CcceeEEEec
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      ..++.+|||+|||+|.+++.+++.|..+|+++|+|+.+++.|+++++.+++.  +++++++|+.+.    ...||+|+.+
T Consensus       537 ~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          537 MSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             HCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             hcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            3578899999999999999999988778999999999999999999999986  699999999873    2378877654


Q ss_pred             c
Q 025035          236 R  236 (259)
Q Consensus       236 v  236 (259)
                      .
T Consensus       617 P  617 (703)
T 3v97_A          617 P  617 (703)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.86  E-value=2.8e-09  Score=92.32  Aligned_cols=73  Identities=14%  Similarity=0.146  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----------Ccce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----------ILTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----------~~~f  229 (259)
                      .++.+|||||||+|..++.+++. + ..+|+++|+|+.+++.|+++++..++. +++++++|+.+.          ...|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            46789999999999999999987 2 349999999999999999999988884 699999998762          2467


Q ss_pred             eEEEec
Q 025035          230 FICKSE  235 (259)
Q Consensus       230 dvv~~~  235 (259)
                      |+++..
T Consensus       158 D~V~~d  163 (247)
T 1sui_A          158 DFIFVD  163 (247)
T ss_dssp             SEEEEC
T ss_pred             EEEEEc
Confidence            876654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.86  E-value=1.1e-08  Score=87.78  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCCCc---ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++.. |..+++++++|+.+.++   .||+++.+
T Consensus        95 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           95 APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            46789999999999999999998 4 359999999999999999998877 76679999999988632   57876653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.86  E-value=6e-09  Score=88.30  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC------CcEEEEeCCHHHHHHHHHHhHhcC-----CcceEEEEecccCCC---c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVMNISVQI---L  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~------~~V~giD~S~~~i~~a~~~~~~~~-----l~~i~~i~~D~~~~~---~  227 (259)
                      .++.+|||||||+|.++..+++. +.      .+|+++|+++.+++.+++++...+     ..+++++++|+.+..   .
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  162 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPNA  162 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGGC
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcCC
Confidence            45789999999999999999985 42      489999999999999999987765     457999999998732   3


Q ss_pred             ceeEEEecccCc
Q 025035          228 TYFICKSERNEH  239 (259)
Q Consensus       228 ~fdvv~~~v~~h  239 (259)
                      .||+|+.....|
T Consensus       163 ~fD~I~~~~~~~  174 (227)
T 1r18_A          163 PYNAIHVGAAAP  174 (227)
T ss_dssp             SEEEEEECSCBS
T ss_pred             CccEEEECCchH
Confidence            688766555443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.85  E-value=7.9e-09  Score=96.65  Aligned_cols=71  Identities=23%  Similarity=0.291  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.+++.+. +|+|+|+|+.|++.|+++++.+++. ++|+++|+.+... .||++..+
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~-~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF-NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence            4578999999999999999999854 9999999999999999999988886 9999999998644 57766553

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.85  E-value=1.4e-09  Score=95.31  Aligned_cols=75  Identities=19%  Similarity=0.048  Sum_probs=62.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCH-------HHHHHHHHHhHhcCCcc-eEEEEecccCC-C------cc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE-------DAINLAQSLANRDGFSC-IKFLVMNISVQ-I------LT  228 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~-------~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-~------~~  228 (259)
                      ++.+|||+|||+|.+++.+++.|. +|+|+|+|+       .+++.|+++++.+++.+ ++++++|+.+. +      ..
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~  161 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGK  161 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCC
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCC
Confidence            467999999999999999999875 899999999       99999999887777655 99999999873 1      46


Q ss_pred             eeEEEecccCc
Q 025035          229 YFICKSERNEH  239 (259)
Q Consensus       229 fdvv~~~v~~h  239 (259)
                      ||+|+.+-..+
T Consensus       162 fD~V~~dP~~~  172 (258)
T 2r6z_A          162 PDIVYLDPMYP  172 (258)
T ss_dssp             CSEEEECCCC-
T ss_pred             ccEEEECCCCC
Confidence            88776654433

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.85  E-value=1.3e-08  Score=92.54  Aligned_cols=77  Identities=17%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC-CCcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV-QILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~-~~~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++...++. +++|+++|+.+ .+..||+++...+.|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  259 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLL  259 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEecccc
Confidence            457899999999999999999883 348999999 99999999999888875 69999999976 444699776665555


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       260 ~  260 (374)
T 1qzz_A          260 N  260 (374)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.84  E-value=3e-09  Score=88.99  Aligned_cols=72  Identities=15%  Similarity=0.061  Sum_probs=59.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----CcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..++. +++++++|+.+.    .. ||+++..
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            35789999999999999999987 2 349999999999999999999888775 499999998653    23 8876654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.84  E-value=6.1e-09  Score=90.08  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-ccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~~h  239 (259)
                      ++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++..    .+  ++++|+.++++   .||+|++. .++|
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~  126 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS  126 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence            478999999999999999999876 89999999999999998754    12  88999988654   68976654 4566


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       127 ~~~  129 (260)
T 2avn_A          127 YVE  129 (260)
T ss_dssp             HCS
T ss_pred             ccc
Confidence            543

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.84  E-value=4.5e-09  Score=95.16  Aligned_cols=76  Identities=21%  Similarity=0.245  Sum_probs=64.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-cceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-LTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-~~fdvv~~~v~~h~  240 (259)
                      .+.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.+++++...++ +++++++|+.+.. ..||+|+++...|.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~~~~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEVKGRFDMIISNPPFHD  273 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTCCSCEEEEEECCCCCS
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccccCCeeEEEECCCccc
Confidence            467999999999999999999864 3999999999999999999988876 5788999987753 38998888776664

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.84  E-value=1.2e-08  Score=95.53  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=59.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHH-------HHHhHhcC--CcceEEEEecccCC-------
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLA-------QSLANRDG--FSCIKFLVMNISVQ-------  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a-------~~~~~~~~--l~~i~~i~~D~~~~-------  225 (259)
                      .++.+|||||||+|.++..+++. |..+|+|||+|+.+++.|       ++++...|  +.+++++++|....       
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            46789999999999999999996 666899999999999999       88888888  45899999865421       


Q ss_pred             CcceeEEEec
Q 025035          226 ILTYFICKSE  235 (259)
Q Consensus       226 ~~~fdvv~~~  235 (259)
                      ...||+|+.+
T Consensus       321 ~~~FDvIvvn  330 (433)
T 1u2z_A          321 IPQCDVILVN  330 (433)
T ss_dssp             GGGCSEEEEC
T ss_pred             cCCCCEEEEe
Confidence            2367876654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.84  E-value=1.9e-08  Score=84.65  Aligned_cols=65  Identities=18%  Similarity=0.178  Sum_probs=53.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||||||+|.++..+++.     +|+|+|+.+++.++++       +++++++|+.+.++   .||+|++..+.|.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            3789999999999999988764     9999999999999885       57899999988654   6886665544443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.83  E-value=6.3e-09  Score=93.35  Aligned_cols=74  Identities=11%  Similarity=-0.048  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE  235 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~  235 (259)
                      ..++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.+++++++.|+.+++++++|+.+.+.   .||+|+.+
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEe
Confidence            356789999999999999999986  235899999999999999999999998789999999988542   68876653

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.83  E-value=4.7e-09  Score=96.12  Aligned_cols=60  Identities=15%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|+++++.+++.+++|+++|+.+.
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~  273 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEF  273 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHH
T ss_pred             CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHH
Confidence            578999999999999999986 459999999999999999999999988899999998763

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.83  E-value=1.1e-08  Score=93.15  Aligned_cols=76  Identities=14%  Similarity=0.013  Sum_probs=63.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----CcceeEEEeccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----ILTYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~~~fdvv~~~v~  237 (259)
                      ...+|||||||+|.++..++++ +..+++++|+ +.+++.|++++...++. +++|+.+|+.+.    +..||+++...+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            5689999999999999999987 3348999999 99999999998887764 699999999984    347897776666


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      .|.
T Consensus       258 lh~  260 (363)
T 3dp7_A          258 LDC  260 (363)
T ss_dssp             STT
T ss_pred             hhh
Confidence            653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.83  E-value=6.6e-09  Score=96.21  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             hccCCC-CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----CcceeEEE
Q 025035          159 NDKYLS-SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       159 l~~~~~-~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      +....+ +.+|||+|||+|.+++.+++.|. +|+++|+|+.+++.|+++++.+++. .++.++|+.+.    ...||+|+
T Consensus       208 l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~Ii  285 (393)
T 4dmg_A          208 FEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHHVL  285 (393)
T ss_dssp             HHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEEEE
T ss_pred             HHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCEEE
Confidence            333344 88999999999999999999987 4999999999999999999998874 46779998773    22488766


Q ss_pred             ec
Q 025035          234 SE  235 (259)
Q Consensus       234 ~~  235 (259)
                      .+
T Consensus       286 ~d  287 (393)
T 4dmg_A          286 LD  287 (393)
T ss_dssp             EC
T ss_pred             EC
Confidence            54

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.83  E-value=4.8e-09  Score=96.47  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=64.6

Q ss_pred             hhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-------Cccee
Q 025035          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-------ILTYF  230 (259)
Q Consensus       158 ~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-------~~~fd  230 (259)
                      .+... ++.+|||+|||+|.+++.+++. ..+|+|+|+|+.+++.|+++++.+++.+++|+++|+.+.       ...||
T Consensus       204 ~~~~~-~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          204 YMERF-RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             HGGGC-CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHHhc-CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCee
Confidence            34444 6789999999999999999998 559999999999999999999999987799999999874       23688


Q ss_pred             EEEec
Q 025035          231 ICKSE  235 (259)
Q Consensus       231 vv~~~  235 (259)
                      +|+.+
T Consensus       282 ~Ii~d  286 (382)
T 1wxx_A          282 LVVLD  286 (382)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.83  E-value=8.7e-09  Score=89.10  Aligned_cols=61  Identities=15%  Similarity=0.213  Sum_probs=54.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      ++.+|||||||+|.++..+++++ .+|+|+|+|+.+++.++++....  .+++++++|+.+.++
T Consensus        30 ~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~--~~v~~~~~D~~~~~~   90 (244)
T 1qam_A           30 EHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKF   90 (244)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCC
T ss_pred             CCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccC--CCeEEEEChHHhCCc
Confidence            57899999999999999999997 49999999999999999987643  479999999998654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.83  E-value=9e-09  Score=88.38  Aligned_cols=73  Identities=14%  Similarity=0.233  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----------Ccce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----------ILTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----------~~~f  229 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..|+. +++++++|+.+.          ...|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            56789999999999999999987 2 359999999999999999999988885 599999998762          2468


Q ss_pred             eEEEec
Q 025035          230 FICKSE  235 (259)
Q Consensus       230 dvv~~~  235 (259)
                      |+++..
T Consensus       149 D~I~~d  154 (237)
T 3c3y_A          149 DFGFVD  154 (237)
T ss_dssp             EEEEEC
T ss_pred             CEEEEC
Confidence            877654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.82  E-value=1.4e-09  Score=94.02  Aligned_cols=74  Identities=15%  Similarity=0.014  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC---------Cccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ---------ILTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~---------~~~fd  230 (259)
                      .++.+|||||||+|..++.+++. + ..+|+++|+++.+++.|+++++..++. +|+++++|+.+.         ...||
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD  138 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD  138 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence            45789999999999999999985 2 349999999999999999999998885 699999999763         24688


Q ss_pred             EEEecc
Q 025035          231 ICKSER  236 (259)
Q Consensus       231 vv~~~v  236 (259)
                      +|+...
T Consensus       139 ~V~~d~  144 (242)
T 3r3h_A          139 FIFIDA  144 (242)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            766543

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.82  E-value=3.4e-09  Score=92.93  Aligned_cols=79  Identities=9%  Similarity=-0.040  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccC
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNE  238 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~  238 (259)
                      ...+.+|||||||.|-+++.++.. +..+|+++|+++.|++.+++++..+|+ +.++.+.|....++  .+|+++...+.
T Consensus       130 i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          130 LPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             SCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred             cCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHHH
Confidence            345789999999999999999887 566999999999999999999999987 58999999987544  89988776665


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |.-
T Consensus       209 ~~L  211 (281)
T 3lcv_B          209 PCL  211 (281)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            543

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.81  E-value=9.5e-09  Score=85.96  Aligned_cols=70  Identities=20%  Similarity=0.216  Sum_probs=55.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC--CC---cceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV--QI---LTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~--~~---~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..+++.| .+|+|+|+|+.+++.++++.       .+++++|+.+  .+   ..||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            357899999999999999999986 59999999999999998743       3688899876  22   26886655444


Q ss_pred             -Ccc
Q 025035          238 -EHY  240 (259)
Q Consensus       238 -~h~  240 (259)
                       +|.
T Consensus       103 l~~~  106 (230)
T 3cc8_A          103 LEHL  106 (230)
T ss_dssp             GGGS
T ss_pred             hhhc
Confidence             444

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.81  E-value=9.2e-09  Score=92.04  Aligned_cols=72  Identities=10%  Similarity=0.062  Sum_probs=60.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--------cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--------LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--------~~fdvv~  233 (259)
                      .++.+|||+|||+|..+..++++. ..+|+|+|+|+.|++.|+++++..+ .+++++++|+.+++        ..||.++
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl  103 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTLGIEKVDGIL  103 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhcCCCCCCEEE
Confidence            357899999999999999999983 3599999999999999999998877 58999999998753        2578665


Q ss_pred             ec
Q 025035          234 SE  235 (259)
Q Consensus       234 ~~  235 (259)
                      .+
T Consensus       104 ~D  105 (301)
T 1m6y_A          104 MD  105 (301)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.80  E-value=1e-08  Score=86.57  Aligned_cols=74  Identities=14%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC--C-------ccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ--I-------LTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~--~-------~~fd  230 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++. +++++++|+.+.  .       ..||
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D  147 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD  147 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence            46789999999999999999986 2 359999999999999999999988874 699999998653  1       4688


Q ss_pred             EEEecc
Q 025035          231 ICKSER  236 (259)
Q Consensus       231 vv~~~v  236 (259)
                      +++...
T Consensus       148 ~v~~d~  153 (229)
T 2avd_A          148 VAVVDA  153 (229)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            766543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.80  E-value=1.6e-08  Score=88.03  Aligned_cols=73  Identities=18%  Similarity=0.214  Sum_probs=61.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhc-C--CcceEEEEecccCCCc---ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-G--FSCIKFLVMNISVQIL---TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~-~--l~~i~~i~~D~~~~~~---~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|++++... +  ..+++++++|+.+.++   .||+++.
T Consensus        98 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A           98 FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence            45789999999999999999986 3 459999999999999999998877 5  4579999999988643   6887665


Q ss_pred             c
Q 025035          235 E  235 (259)
Q Consensus       235 ~  235 (259)
                      +
T Consensus       178 ~  178 (280)
T 1i9g_A          178 D  178 (280)
T ss_dssp             E
T ss_pred             C
Confidence            4

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.80  E-value=1e-08  Score=87.65  Aligned_cols=62  Identities=18%  Similarity=0.133  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~  224 (259)
                      .++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...++.+ ++++++|+.+
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            357899999999999999999872  3599999999999999999998888765 9999999865

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.79  E-value=2.1e-08  Score=87.57  Aligned_cols=73  Identities=19%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC--cceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI--LTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~--~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++..++ .+++++++|+.+..  ..||+++.+
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~  188 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  188 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC
Confidence            45789999999999999999988 4 45999999999999999999988887 47999999998752  258877654

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.79  E-value=1.7e-08  Score=88.86  Aligned_cols=77  Identities=13%  Similarity=0.025  Sum_probs=59.8

Q ss_pred             CCEEEEEccCc---ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-------------C-
Q 025035          165 SWSVLDIGTGN---GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-------------I-  226 (259)
Q Consensus       165 ~~~VLDiGcG~---G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-------------~-  226 (259)
                      ..+|||||||+   |.++..+.+. +..+|+++|+|+.|++.|++++...  .+++|+++|+.+.             + 
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d~  155 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMIDF  155 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCCC
Confidence            47999999999   9988777665 2349999999999999999988532  3799999999752             1 


Q ss_pred             cceeEEEecccCccccc
Q 025035          227 LTYFICKSERNEHYTFD  243 (259)
Q Consensus       227 ~~fdvv~~~v~~h~~~D  243 (259)
                      ..||++++..+.|+..|
T Consensus       156 ~~~d~v~~~~vlh~~~d  172 (274)
T 2qe6_A          156 SRPAAIMLVGMLHYLSP  172 (274)
T ss_dssp             TSCCEEEETTTGGGSCT
T ss_pred             CCCEEEEEechhhhCCc
Confidence            15787777766665544

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.79  E-value=2e-08  Score=85.52  Aligned_cols=72  Identities=21%  Similarity=0.242  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCC-c--ceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQI-L--TYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~-~--~fdvv~~~  235 (259)
                      .++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|+++....++ .+++++++|+.+.. .  .||+++.+
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence            35789999999999999999998 45999999999999999999988887 57999999998854 2  67876653

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.79  E-value=2.7e-09  Score=91.88  Aligned_cols=47  Identities=19%  Similarity=0.201  Sum_probs=41.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      ++.+|||+|||+|.++..+++.   +..+|+|+|+|+.+++.|++++...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~  100 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALL  100 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTT
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHh
Confidence            4579999999999999999886   2248999999999999999988765

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.78  E-value=1.4e-08  Score=89.59  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--C---------CcceEEEEecccCC---Ccce
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--G---------FSCIKFLVMNISVQ---ILTY  229 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~---------l~~i~~i~~D~~~~---~~~f  229 (259)
                      .+.+|||||||+|.++..+++++..+|+++|+++.+++.|++++ ..  +         -++++++++|+.+.   ...|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f  153 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  153 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence            46799999999999999999986669999999999999999988 33  2         24699999998653   3478


Q ss_pred             eEEEecccC
Q 025035          230 FICKSERNE  238 (259)
Q Consensus       230 dvv~~~v~~  238 (259)
                      |+|+.+...
T Consensus       154 D~Ii~d~~~  162 (281)
T 1mjf_A          154 DVIIADSTD  162 (281)
T ss_dssp             EEEEEECCC
T ss_pred             eEEEECCCC
Confidence            987766554

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.78  E-value=3.2e-08  Score=85.32  Aligned_cols=74  Identities=16%  Similarity=0.143  Sum_probs=58.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.+.+.++..  .++.++++|+..+.      ..||++++
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEEe
Confidence            46889999999999999999986 3 348999999999987666555443  47999999998642      26888777


Q ss_pred             cccC
Q 025035          235 ERNE  238 (259)
Q Consensus       235 ~v~~  238 (259)
                      ++..
T Consensus       153 d~a~  156 (232)
T 3id6_C          153 DIAQ  156 (232)
T ss_dssp             CCCC
T ss_pred             cCCC
Confidence            6543

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.78  E-value=2e-08  Score=89.68  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc--ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL--TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..++++ +..+++++|+| .+++.|++++...++. +++|+++|+.+.+.  .||+++...+.
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            35689999999999999999987 23499999999 9999999999888775 59999999987533  58977665554


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       243 ~~  244 (335)
T 2r3s_A          243 HH  244 (335)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.78  E-value=5.2e-09  Score=91.08  Aligned_cols=75  Identities=13%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcc----eeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILT----YFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~----fdvv~~~v~~h  239 (259)
                      ++.+|||||||+|.++..++++|..+|+|+|+++.+++.++++    +..+++++++|+.+.++.    ..+++.+.-.+
T Consensus        31 ~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~~~~~vv~NlPy~  106 (249)
T 3ftd_A           31 EGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLGKELKVVGNLPYN  106 (249)
T ss_dssp             TTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSCSSEEEEEECCTT
T ss_pred             CcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHccCCcEEEEECchh
Confidence            5779999999999999999999756999999999999999886    224799999999987552    12455555444


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       107 i~~  109 (249)
T 3ftd_A          107 VAS  109 (249)
T ss_dssp             THH
T ss_pred             ccH
Confidence            433

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=98.77  E-value=4.5e-09  Score=92.28  Aligned_cols=45  Identities=22%  Similarity=0.246  Sum_probs=37.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~  208 (259)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.|++.|+++++
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHh
Confidence            578999999999996665555434499999999999999998654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.76  E-value=2.8e-08  Score=89.88  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC-CCcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV-QILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~-~~~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.|++++...++. +++++++|+.+ .+..||+++...+.|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  260 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL  260 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEccccc
Confidence            456899999999999999999884 348999999 99999999999888875 69999999976 344699766655554


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       261 ~  261 (360)
T 1tw3_A          261 N  261 (360)
T ss_dssp             G
T ss_pred             C
Confidence            3

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.75  E-value=3e-08  Score=89.14  Aligned_cols=75  Identities=23%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcC-----------CcceEEEEecccCCC---
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVMNISVQI---  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~-----------l~~i~~i~~D~~~~~---  226 (259)
                      .++.+|||+|||+|.++..+++. |. .+|+|+|+++.+++.|++++...+           ..+++++++|+.+..   
T Consensus       104 ~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~~  183 (336)
T 2b25_A          104 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDI  183 (336)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccccc
Confidence            46789999999999999999997 54 599999999999999999987532           247999999998752   


Q ss_pred             --cceeEEEeccc
Q 025035          227 --LTYFICKSERN  237 (259)
Q Consensus       227 --~~fdvv~~~v~  237 (259)
                        ..||+|+.+..
T Consensus       184 ~~~~fD~V~~~~~  196 (336)
T 2b25_A          184 KSLTFDAVALDML  196 (336)
T ss_dssp             ----EEEEEECSS
T ss_pred             CCCCeeEEEECCC
Confidence              25887766543

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.75  E-value=2.5e-08  Score=90.47  Aligned_cols=79  Identities=18%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc-ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL-TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~-~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..++++. ..+++++|+ +.+++.+++++...++.+ ++++.+|+.+.+. .+|+++...+.|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vlh  267 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILY  267 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEESCGG
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEechhc
Confidence            456899999999999999999873 348999999 999999999998887754 9999999998644 458766666555


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       268 ~~~  270 (359)
T 1x19_A          268 SAN  270 (359)
T ss_dssp             GSC
T ss_pred             cCC
Confidence            433

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.74  E-value=1.2e-08  Score=91.54  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh--cC---CcceEEEEecccCC----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG---FSCIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~--~~---l~~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      .+.+|||||||+|..+..++++ +..+|+++|+++.+++.|++++..  .+   -++++++++|+.+.    ...||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            4679999999999999999988 455999999999999999998764  22   24799999998773    34799888


Q ss_pred             ecccCcc
Q 025035          234 SERNEHY  240 (259)
Q Consensus       234 ~~v~~h~  240 (259)
                      .+...|.
T Consensus       157 ~d~~~~~  163 (314)
T 1uir_A          157 IDLTDPV  163 (314)
T ss_dssp             EECCCCB
T ss_pred             ECCCCcc
Confidence            7766554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.74  E-value=3.5e-08  Score=85.38  Aligned_cols=68  Identities=22%  Similarity=0.179  Sum_probs=56.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v  236 (259)
                      ++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++.     .++.++++|+.++++   .||+|++..
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeC
Confidence            4789999999999999999997 2349999999999999998864     368999999988653   688776543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.73  E-value=1.2e-08  Score=90.31  Aligned_cols=60  Identities=15%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCc----EEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSD----LTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~----V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      .++.+|||||||+|.++..|++++. +    |+|+|+++.|++.++++.    ..+++++++|+.+.++
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDF  104 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCG
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCCh
Confidence            3578999999999999999999854 4    999999999999999983    2479999999998754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.73  E-value=3.3e-08  Score=88.61  Aligned_cols=79  Identities=19%  Similarity=0.014  Sum_probs=64.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC-CcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ-ILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~-~~~fdvv~~~v~~h~  240 (259)
                      +..+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++ .+++|+.+|+.+. +..||+++...+.|.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~  247 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHD  247 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhcc
Confidence            3579999999999999999987 3348999999 9999999999988876 3699999999743 337897776666665


Q ss_pred             ccc
Q 025035          241 TFD  243 (259)
Q Consensus       241 ~~D  243 (259)
                      -.|
T Consensus       248 ~~~  250 (332)
T 3i53_A          248 WDD  250 (332)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            444

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.73  E-value=3e-08  Score=87.29  Aligned_cols=76  Identities=18%  Similarity=0.208  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++...  ++  ++++++++|+.+.    ...||+|+.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999999999999988 5669999999999999999987542  22  4799999998762    347998887


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      +...+
T Consensus       155 d~~~~  159 (275)
T 1iy9_A          155 DSTEP  159 (275)
T ss_dssp             SCSSC
T ss_pred             CCCCC
Confidence            66543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.72  E-value=1.2e-08  Score=92.41  Aligned_cols=74  Identities=14%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC-----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ-----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~-----~~~fdvv~  233 (259)
                      .+.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++...  ++  .+++++++|+.+.     ...||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            4689999999999999999987 3459999999999999999988652  33  4799999998763     23799887


Q ss_pred             eccc
Q 025035          234 SERN  237 (259)
Q Consensus       234 ~~v~  237 (259)
                      .+..
T Consensus       200 ~d~~  203 (334)
T 1xj5_A          200 VDSS  203 (334)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            7654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.72  E-value=1.5e-08  Score=86.59  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC----C-----ccee
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ----I-----LTYF  230 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~----~-----~~fd  230 (259)
                      .++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..++. +++++++|+.+.    +     ..||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            35789999999999999999987 2 348999999999999999999888875 599999997542    1     4688


Q ss_pred             EEEec
Q 025035          231 ICKSE  235 (259)
Q Consensus       231 vv~~~  235 (259)
                      +++..
T Consensus       151 ~V~~d  155 (232)
T 3cbg_A          151 LIFID  155 (232)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            76644

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.72  E-value=3.4e-08  Score=89.05  Aligned_cols=77  Identities=14%  Similarity=0.117  Sum_probs=64.0

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC----cceeEEEecccC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI----LTYFICKSERNE  238 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~----~~fdvv~~~v~~  238 (259)
                      +.+|||||||+|.++..++++ +..+++++|+ +.+++.++++....++. +++++.+|+.+.+    ..||+++...+.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            789999999999999999987 3349999999 77999999999888775 5999999999864    269977766666


Q ss_pred             cccc
Q 025035          239 HYTF  242 (259)
Q Consensus       239 h~~~  242 (259)
                      |.-.
T Consensus       259 h~~~  262 (352)
T 3mcz_A          259 HYFD  262 (352)
T ss_dssp             GGSC
T ss_pred             ccCC
Confidence            5433

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.72  E-value=6e-08  Score=86.97  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~  234 (259)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++++.|+.+++++++|+.+..      ..||.|+.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl~  180 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL  180 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEEE
Confidence            46789999999999999999985  34589999999999999999999999888999999998753      25776654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.70  E-value=2.9e-08  Score=89.40  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++...  ++  ++++++++|+.+.    ...||+|+.
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4679999999999999999988 4569999999999999999998652  22  4699999998763    347998876


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       196 d~~  198 (321)
T 2pt6_A          196 DSS  198 (321)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            654

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.68  E-value=3.5e-08  Score=91.09  Aligned_cols=73  Identities=22%  Similarity=0.281  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINLA  203 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~V~giD~S~~~i~~a  203 (259)
                      .++.+|||+|||+|.+++.++..+.                                       .+|+|+|+++.|++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            4568999999999999999887632                                       3699999999999999


Q ss_pred             HHHhHhcCCc-ceEEEEecccCCCc--ceeEEEec
Q 025035          204 QSLANRDGFS-CIKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       204 ~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++++...|+. +|+|+++|+.+.+.  .||+|.++
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N  308 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN  308 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence            9999999986 59999999998653  67766553

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.67  E-value=5.2e-08  Score=86.92  Aligned_cols=76  Identities=17%  Similarity=0.100  Sum_probs=60.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh----cCCcceEEEEecccCC-----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVMNISVQ-----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~----~~l~~i~~i~~D~~~~-----~~~fdvv~  233 (259)
                      ++.+|||||||+|.++..+++. +..+|+++|+|+.+++.|++++..    ....+++++++|+.+.     ...||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            4679999999999999999987 345999999999999999998742    1224699999998763     33799887


Q ss_pred             ecccCc
Q 025035          234 SERNEH  239 (259)
Q Consensus       234 ~~v~~h  239 (259)
                      .+...+
T Consensus       175 ~d~~~~  180 (304)
T 3bwc_A          175 IDTTDP  180 (304)
T ss_dssp             EECC--
T ss_pred             ECCCCc
Confidence            765544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.67  E-value=7.8e-08  Score=87.74  Aligned_cols=80  Identities=18%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~~h  239 (259)
                      .+..+|||||||+|.++..++++ +..+++++|+ +.+++.|++++...++. +++|+.+|+.+... .||+++...+.|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh  279 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLH  279 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGG
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhc
Confidence            35689999999999999999987 3348999999 99999999999888764 69999999985322 789776666665


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      ...|
T Consensus       280 ~~~d  283 (369)
T 3gwz_A          280 DWDD  283 (369)
T ss_dssp             GSCH
T ss_pred             cCCH
Confidence            5443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.67  E-value=6.4e-08  Score=86.05  Aligned_cols=75  Identities=17%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh--cC--CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG--FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~--~~--l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .+  .++++++++|+.+.    ...||+|+.
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            3679999999999999999998 556999999999999999998754  22  24799999997652    237898776


Q ss_pred             cccC
Q 025035          235 ERNE  238 (259)
Q Consensus       235 ~v~~  238 (259)
                      +...
T Consensus       170 d~~~  173 (296)
T 1inl_A          170 DSTD  173 (296)
T ss_dssp             EC--
T ss_pred             cCCC
Confidence            5543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.67  E-value=5.3e-08  Score=81.06  Aligned_cols=62  Identities=18%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--------------cc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--------------LT  228 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--------------~~  228 (259)
                      .++.+|||+|||+|.++..+++++ .+|+|+|+++.           ..+.+++++++|+.+..              ..
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~~-~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSLA-RKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTTC-SEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHcC-CcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            467899999999999999999984 49999999973           12347999999998853              37


Q ss_pred             eeEEEecc
Q 025035          229 YFICKSER  236 (259)
Q Consensus       229 fdvv~~~v  236 (259)
                      ||+|.++.
T Consensus        92 ~D~Vlsd~   99 (191)
T 3dou_A           92 VDDVVSDA   99 (191)
T ss_dssp             EEEEEECC
T ss_pred             ceEEecCC
Confidence            88887765

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.67  E-value=3.6e-08  Score=88.78  Aligned_cols=74  Identities=11%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeEEEecccCc
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFICKSERNEH  239 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdvv~~~v~~h  239 (259)
                      .+|||||||+|.++..++++ +..+|++||+++.+++.|++++....-.+++++++|+.+.     ...||+|+.+...+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            49999999999999999994 4449999999999999999987654335799999998763     23799888766554

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.66  E-value=1.4e-07  Score=85.32  Aligned_cols=73  Identities=22%  Similarity=0.130  Sum_probs=61.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC------CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~------~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~  235 (259)
                      ++.+|||+|||+|.++..+++...      .+|+|+|+++.+++.|+.++...|+ ++.++++|.....  ..||+|+++
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEEEC
Confidence            457999999999999999987631      4899999999999999999988887 7899999987743  378887776


Q ss_pred             cc
Q 025035          236 RN  237 (259)
Q Consensus       236 v~  237 (259)
                      ..
T Consensus       209 PP  210 (344)
T 2f8l_A          209 LP  210 (344)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.66  E-value=4.1e-08  Score=87.77  Aligned_cols=76  Identities=20%  Similarity=0.271  Sum_probs=60.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHh--cCC--cceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~--~~l--~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+|||||||+|..+..+++++ ..+|+++|+++.+++.|++++..  .++  .+++++++|+.+.    ...||+|+.
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            46799999999999999999883 46999999999999999998765  222  4799999998662    347998877


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      +...+
T Consensus       175 d~~~~  179 (304)
T 2o07_A          175 DSSDP  179 (304)
T ss_dssp             ECC--
T ss_pred             CCCCC
Confidence            65543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.66  E-value=5.1e-08  Score=86.11  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=61.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      ++.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++...+    .++++++++|+.+.    ...||+|+.
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            46799999999999999999873 4699999999999999999876532    24799999998763    347898777


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      +...+
T Consensus       158 d~~~~  162 (283)
T 2i7c_A          158 DSSDP  162 (283)
T ss_dssp             ECCCT
T ss_pred             cCCCC
Confidence            55433

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.65  E-value=4.7e-08  Score=90.50  Aligned_cols=73  Identities=19%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINLA  203 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~V~giD~S~~~i~~a  203 (259)
                      .++..|||++||+|.+++.++..+.                                       .+|+|+|+++.|++.|
T Consensus       200 ~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~A  279 (393)
T 3k0b_A          200 HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIA  279 (393)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHH
Confidence            4567999999999999998887632                                       2599999999999999


Q ss_pred             HHHhHhcCCcc-eEEEEecccCCCc--ceeEEEec
Q 025035          204 QSLANRDGFSC-IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       204 ~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++++...|+.+ |+++++|+.+.+.  .||+|.++
T Consensus       280 r~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N  314 (393)
T 3k0b_A          280 KQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN  314 (393)
T ss_dssp             HHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred             HHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence            99999999864 9999999998654  67766655

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.63  E-value=8e-08  Score=90.22  Aligned_cols=73  Identities=14%  Similarity=0.065  Sum_probs=62.9

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEe
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKS  234 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~  234 (259)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.+++++++.|+.+++++++|+.+.+     ..||+|+.
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            356789999999999999999986  22589999999999999999999999888999999998864     35887664

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.62  E-value=7.1e-08  Score=89.02  Aligned_cols=73  Identities=19%  Similarity=0.260  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINLA  203 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~---------------------------------------~~V~giD~S~~~i~~a  203 (259)
                      .++..|||.+||+|.+++.++..+.                                       .+|+|+|+++.|++.|
T Consensus       193 ~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~A  272 (384)
T 3ldg_A          193 FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIA  272 (384)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHH
Confidence            4567999999999999999887532                                       2599999999999999


Q ss_pred             HHHhHhcCCcc-eEEEEecccCCCc--ceeEEEec
Q 025035          204 QSLANRDGFSC-IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       204 ~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++|++..|+.+ |+|+++|+.+.+.  .||+|.++
T Consensus       273 r~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N  307 (384)
T 3ldg_A          273 RKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN  307 (384)
T ss_dssp             HHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred             HHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence            99999999865 9999999998654  67776655

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.62  E-value=4.4e-08  Score=92.32  Aligned_cols=74  Identities=15%  Similarity=-0.007  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEec
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKSE  235 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~~  235 (259)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.+++++++.|+.++.++++|+.++.    ..||+|+.+
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            356889999999999999999986  33589999999999999999999999988999999988743    368877653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.62  E-value=8e-08  Score=91.12  Aligned_cols=71  Identities=13%  Similarity=0.142  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~  234 (259)
                      ++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.+++++++.|+.++.++++|+.+++    ..||+|+.
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            6789999999999999999986 2 3589999999999999999999999888999999998743    36887765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.62  E-value=5.1e-08  Score=86.08  Aligned_cols=61  Identities=23%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             CCEEEEEccCc--ChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGN--GLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~--G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+|||||||.  +..+..++++  +..+|+++|.|+.||+.|++++...+..+++|+++|+.++
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            36899999997  4344555543  4459999999999999999988654434699999999884

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.61  E-value=2.7e-08  Score=86.74  Aligned_cols=76  Identities=11%  Similarity=-0.009  Sum_probs=58.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCc--EEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--c------eeEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--T------YFIC  232 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~--V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~------fdvv  232 (259)
                      .++.+|||||||+|.++. +.+ +. +  |+|+|+++.|++.++++....  .+++++++|+.+.++  .      .++|
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~~~~~~~~v   94 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRV   94 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEE
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhcccCCceEE
Confidence            356799999999999999 654 43 6  999999999999999876543  479999999998654  1      2466


Q ss_pred             EecccCccccc
Q 025035          233 KSERNEHYTFD  243 (259)
Q Consensus       233 ~~~v~~h~~~D  243 (259)
                      .++.-.+.+..
T Consensus        95 vsNlPY~i~~~  105 (252)
T 1qyr_A           95 FGNLPYNISTP  105 (252)
T ss_dssp             EEECCTTTHHH
T ss_pred             EECCCCCccHH
Confidence            66665544433

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.61  E-value=5.3e-08  Score=87.49  Aligned_cols=76  Identities=20%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--CC--cceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~l--~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+.+|||||||+|..+..+++. +..+|+++|+++.+++.|++++...  ++  ++++++++|+.+.    ...||+|+.
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4679999999999999999987 4469999999999999999988653  22  4699999998763    347998887


Q ss_pred             cccCc
Q 025035          235 ERNEH  239 (259)
Q Consensus       235 ~v~~h  239 (259)
                      +...|
T Consensus       188 d~~~~  192 (314)
T 2b2c_A          188 DSSDP  192 (314)
T ss_dssp             CCC--
T ss_pred             cCCCC
Confidence            66543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.60  E-value=5.5e-08  Score=89.60  Aligned_cols=72  Identities=17%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc---------------CCcceEEEEecccCCC-
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---------------GFSCIKFLVMNISVQI-  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~---------------~l~~i~~i~~D~~~~~-  226 (259)
                      ++.+|||+|||+|..++.++++ +..+|+++|+++.+++.+++|++.+               ++.+++++++|+.+.. 
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            4789999999999999999998 5558999999999999999999998               8766999999997742 


Q ss_pred             ---cceeEEEec
Q 025035          227 ---LTYFICKSE  235 (259)
Q Consensus       227 ---~~fdvv~~~  235 (259)
                         ..||+|..+
T Consensus       127 ~~~~~fD~I~lD  138 (378)
T 2dul_A          127 ERHRYFHFIDLD  138 (378)
T ss_dssp             HSTTCEEEEEEC
T ss_pred             hccCCCCEEEeC
Confidence               268876543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.59  E-value=1e-07  Score=78.58  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=43.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .++.+|||+|||+|.++..++++ +  ..+|+|+|+|+.+           ...+++++++|+.+..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchh
Confidence            35679999999999999999987 3  3589999999921           2346899999998764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.59  E-value=5.8e-08  Score=91.68  Aligned_cols=72  Identities=13%  Similarity=0.006  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC----cceeEEEe
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI----LTYFICKS  234 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~----~~fdvv~~  234 (259)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.+++++++.|+. +.++++|+.++.    ..||+|+.
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~  176 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLL  176 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEE
Confidence            356889999999999999999986  2348999999999999999999999987 999999987753    36887764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.59  E-value=7.7e-09  Score=92.12  Aligned_cols=43  Identities=16%  Similarity=0.249  Sum_probs=38.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+|||||||+|.++..++++|..+|+|+|+|+.|++.+.+
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r  126 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLR  126 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHH
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence            3578999999999999999999987799999999999998544

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.58  E-value=9.4e-08  Score=84.32  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             CCEEEEEccCcCh----hHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHhHh-----------------------cC-
Q 025035          165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG-  211 (259)
Q Consensus       165 ~~~VLDiGcG~G~----~~~~la~~-g----~~~V~giD~S~~~i~~a~~~~~~-----------------------~~-  211 (259)
                      +.+|||+|||+|.    +++.|++. +    ..+|+|+|+|+.||+.|++++-.                       .| 
T Consensus       106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~  185 (274)
T 1af7_A          106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL  185 (274)
T ss_dssp             CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred             CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence            5699999999998    66666665 3    12899999999999999986410                       01 


Q ss_pred             --C-----cceEEEEecccCCC----cceeEEEeccc
Q 025035          212 --F-----SCIKFLVMNISVQI----LTYFICKSERN  237 (259)
Q Consensus       212 --l-----~~i~~i~~D~~~~~----~~fdvv~~~v~  237 (259)
                        +     .+|+|.++|+.+.+    ..||+|++.-+
T Consensus       186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnv  222 (274)
T 1af7_A          186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNV  222 (274)
T ss_dssp             EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSS
T ss_pred             eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCc
Confidence              0     25999999999853    26896655433

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.57  E-value=1.9e-08  Score=86.58  Aligned_cols=46  Identities=15%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~  208 (259)
                      .++.+|||||||+|.++..++++|..+|+|+|+|+.|++.++++..
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCc
Confidence            3567999999999999999999986699999999999999877543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.56  E-value=6.9e-08  Score=76.89  Aligned_cols=67  Identities=16%  Similarity=0.181  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f  229 (259)
                      .++.+|||+|||+|.++..+++. |. .+|+|+|+|+ +++.          .+++++++|+.+.+           ..|
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence            45789999999999999999988 43 5999999999 7532          47999999998753           268


Q ss_pred             eEEEecccCcc
Q 025035          230 FICKSERNEHY  240 (259)
Q Consensus       230 dvv~~~v~~h~  240 (259)
                      |+|+.....|.
T Consensus        90 D~i~~~~~~~~  100 (180)
T 1ej0_A           90 QVVMSDMAPNM  100 (180)
T ss_dssp             EEEEECCCCCC
T ss_pred             eEEEECCCccc
Confidence            98777655543

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.55  E-value=3.8e-09  Score=91.09  Aligned_cols=60  Identities=22%  Similarity=0.302  Sum_probs=52.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.++++..  +..+++++++|+.+.+
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~   88 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQ   88 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcC
Confidence            56799999999999999999987 599999999999999988765  2347999999999865

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.54  E-value=2.7e-08  Score=91.92  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=52.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC---cceeEEEecc-c
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI---LTYFICKSER-N  237 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~---~~fdvv~~~v-~  237 (259)
                      ++.+|||||||+|.++..++++|. +|+|+|+|+.|++.|+++    ++..  ..|...+...++   ..||+|++.. +
T Consensus       107 ~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl  181 (416)
T 4e2x_A          107 PDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANTL  181 (416)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESCG
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECChH
Confidence            578999999999999999999977 999999999999999875    3322  123334443332   3788655544 4


Q ss_pred             Ccc
Q 025035          238 EHY  240 (259)
Q Consensus       238 ~h~  240 (259)
                      +|.
T Consensus       182 ~h~  184 (416)
T 4e2x_A          182 CHI  184 (416)
T ss_dssp             GGC
T ss_pred             Hhc
Confidence            454

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.53  E-value=4.3e-08  Score=84.24  Aligned_cols=68  Identities=15%  Similarity=0.064  Sum_probs=53.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---Cc----ceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---IL----TYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~~----~fdv  231 (259)
                      ++.+|||||||+|..+..|++.     +..+|+|||+|+.|++.|+.    .. .+++++++|+.+.   +.    .||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhhccCCCCE
Confidence            3679999999999999999986     23599999999999998872    12 4799999999874   21    4776


Q ss_pred             EEecc
Q 025035          232 CKSER  236 (259)
Q Consensus       232 v~~~v  236 (259)
                      |+...
T Consensus       156 I~~d~  160 (236)
T 2bm8_A          156 IFIDN  160 (236)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            55443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.52  E-value=6.9e-08  Score=89.37  Aligned_cols=73  Identities=11%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCCC-----cceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQI-----LTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~~-----~~fdvv~~  234 (259)
                      ++.+|||++||+|.+++.++.+  |..+|+++|+++.+++.+++|++.+++.+  ++++++|+.+..     ..||+|..
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4679999999999999999985  54689999999999999999999999865  999999986632     26887665


Q ss_pred             cc
Q 025035          235 ER  236 (259)
Q Consensus       235 ~v  236 (259)
                      +-
T Consensus       132 DP  133 (392)
T 3axs_A          132 DP  133 (392)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.51  E-value=2.5e-08  Score=88.06  Aligned_cols=72  Identities=11%  Similarity=0.052  Sum_probs=53.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH-hcCCc-ceEEE--EecccCCCc-ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFL--VMNISVQIL-TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~-~~~l~-~i~~i--~~D~~~~~~-~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..++++  .+|+|+|+|+ |+..++++.. ..... ++.|+  ++|+.+++. .||+|.+++.
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~  157 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIG  157 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCC
Confidence            45789999999999999999998  4899999999 6443322110 01111 68999  999988654 7898887766

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.51  E-value=9.2e-08  Score=85.56  Aligned_cols=73  Identities=15%  Similarity=0.058  Sum_probs=60.2

Q ss_pred             CEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC-CcceeEEEecccCc
Q 025035          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ-ILTYFICKSERNEH  239 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~-~~~fdvv~~~v~~h  239 (259)
                      .+|||||||+|..+..++++ +..+++++|+ +.+++.+++++...++ .+++++.+|+.+. +..||+++...+.|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~  244 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIG  244 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGG
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhcc
Confidence            89999999999999999987 3348999999 9999999998876654 3699999999873 23688777666655

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.50  E-value=2.7e-08  Score=87.36  Aligned_cols=71  Identities=13%  Similarity=0.031  Sum_probs=53.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHh---HhcCCcceEEE--EecccCCCc-ceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA---NRDGFSCIKFL--VMNISVQIL-TYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~---~~~~l~~i~~i--~~D~~~~~~-~fdvv~~~v  236 (259)
                      .++.+|||||||+|.++..++++  .+|+|||+|+ |+..+++..   +..+ .++.++  ++|+.+++. .||+|.+++
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~~~~fD~V~sd~  148 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLPVERTDVIMCDV  148 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCCCCCCcEEEEeC
Confidence            46789999999999999999998  4899999999 643332211   0111 168999  999998754 789888776


Q ss_pred             c
Q 025035          237 N  237 (259)
Q Consensus       237 ~  237 (259)
                      .
T Consensus       149 ~  149 (265)
T 2oxt_A          149 G  149 (265)
T ss_dssp             C
T ss_pred             c
Confidence            6

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.48  E-value=2.9e-07  Score=85.86  Aligned_cols=71  Identities=11%  Similarity=0.010  Sum_probs=61.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----~~fdvv~~  234 (259)
                      .++.+|||+|||+|..+..+++... .+|+|+|+|+.+++.+++++++.|+ +++++++|+.+.+     ..||+|+.
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~fD~Vl~  321 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQFDRILL  321 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCCCCEEEE
Confidence            5678999999999999999998743 5999999999999999999999887 6899999998864     36887764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.47  E-value=1.2e-07  Score=83.07  Aligned_cols=72  Identities=14%  Similarity=-0.006  Sum_probs=58.8

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc----CCcceEEEEecccCCCcceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVMNISVQILTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~----~l~~i~~i~~D~~~~~~~fdvv~~~v  236 (259)
                      .+.+|||||||+|..+..+++.+ .+|+++|+++.+++.|++++...    .-++++++.+|..+....||+|+.+.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d~  147 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCLQ  147 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEESS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEECC
Confidence            35799999999999999999886 79999999999999999876431    12469999999987545788776653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.46  E-value=2.7e-07  Score=75.68  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=49.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC---------CcEEEEeCCHHHHHHHHHHhHhcCCcceEEE-EecccCCC-----
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF---------SDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VMNISVQI-----  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~---------~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i-~~D~~~~~-----  226 (259)
                      .++.+|||||||+|.++..++++ |.         .+|+|+|+|+.+           .+.+++++ ++|+.+..     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            45789999999999999999998 53         589999999831           23468899 89987632     


Q ss_pred             ------cceeEEEeccc
Q 025035          227 ------LTYFICKSERN  237 (259)
Q Consensus       227 ------~~fdvv~~~v~  237 (259)
                            ..||+|++...
T Consensus        90 ~~~~~~~~fD~V~~~~~  106 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMA  106 (196)
T ss_dssp             HHHSGGGCEEEEEECCC
T ss_pred             HHhcCCCCCcEEEeCCC
Confidence                  26888776543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.45  E-value=2.5e-07  Score=80.95  Aligned_cols=72  Identities=13%  Similarity=0.038  Sum_probs=56.3

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-------C-C-cceEEEEecccCC----CcceeEE
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------G-F-SCIKFLVMNISVQ----ILTYFIC  232 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-------~-l-~~i~~i~~D~~~~----~~~fdvv  232 (259)
                      .+|||+|||+|..++.++.+|. +|+++|+++.+++.+++++++.       + + .+++++++|..+.    +..||+|
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV  168 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence            7999999999999999999977 8999999998877777665432       2 3 3699999998763    2267877


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.+-..
T Consensus       169 ~lDP~y  174 (258)
T 2oyr_A          169 YLDPMF  174 (258)
T ss_dssp             EECCCC
T ss_pred             EEcCCC
Confidence            665444

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.44  E-value=1.7e-07  Score=84.71  Aligned_cols=73  Identities=11%  Similarity=0.002  Sum_probs=56.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYT  241 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~  241 (259)
                      .+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++      ..+++|+++|+.+....||+++...+.|.-
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~  259 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFTSIPNADAVLLKYILHNW  259 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------CCCcEEEeccccCCCCCccEEEeehhhccC
Confidence            34689999999999999999987 3348999999 999988765      136999999997633358877766666643


Q ss_pred             c
Q 025035          242 F  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       260 ~  260 (352)
T 1fp2_A          260 T  260 (352)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.44  E-value=4.5e-07  Score=82.36  Aligned_cols=77  Identities=18%  Similarity=0.027  Sum_probs=60.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~v~~h~~  241 (259)
                      ...+|||||||+|.++..++++ +..+++..|. +.+++.|+++....+..+|+|+.+|+.+.+. .+|+++...++|.-
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~~  257 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHDW  257 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGGS
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeecccC
Confidence            4579999999999999999998 3348889997 7799999998876665689999999987544 67876666666543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.43  E-value=1.3e-06  Score=81.66  Aligned_cols=76  Identities=16%  Similarity=0.021  Sum_probs=62.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc--------------CCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ--------------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--------------g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~  227 (259)
                      ++.+|||+|||+|.++..+++.              ...+++|+|+++.+++.|+.++...|+.  ++.++++|....+.
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            4679999999999999988864              1248999999999999999999888875  68899999887543


Q ss_pred             --ceeEEEecccCc
Q 025035          228 --TYFICKSERNEH  239 (259)
Q Consensus       228 --~fdvv~~~v~~h  239 (259)
                        .||+|+++-..+
T Consensus       251 ~~~fD~Iv~NPPf~  264 (445)
T 2okc_A          251 STLVDVILANPPFG  264 (445)
T ss_dssp             SSCEEEEEECCCSS
T ss_pred             cCCcCEEEECCCCC
Confidence              788877765443

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.43  E-value=3e-07  Score=73.58  Aligned_cols=54  Identities=15%  Similarity=0.139  Sum_probs=45.9

Q ss_pred             CCCEEEEEccCcC-hhHHHHHh-cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc----ceeEEE
Q 025035          164 SSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL----TYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G-~~~~~la~-~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~----~fdvv~  233 (259)
                      .+.+|||||||+| ..+..|++ .|+ .|+++|+++.+++               |++.|+.++..    .||+|+
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCcccccCCcCEEE
Confidence            3679999999999 69999997 777 8999999997766               88899988655    788773

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.40  E-value=3.5e-07  Score=83.35  Aligned_cols=73  Identities=15%  Similarity=0.056  Sum_probs=57.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYT  241 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~  241 (259)
                      .++.+|||||||+|.++..++++. ..+++++|+ +.+++.+++      ..+++++++|+.+....||+++...+.|..
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~~~D~v~~~~~lh~~  280 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFASVPQGDAMILKAVCHNW  280 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTTCCCCEEEEEEESSGGGS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCcccCCCCCCEEEEecccccC
Confidence            356899999999999999999984 348899999 889987764      246999999998733358977766666644


Q ss_pred             c
Q 025035          242 F  242 (259)
Q Consensus       242 ~  242 (259)
                      .
T Consensus       281 ~  281 (372)
T 1fp1_D          281 S  281 (372)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.37  E-value=9.1e-08  Score=85.60  Aligned_cols=73  Identities=11%  Similarity=0.041  Sum_probs=53.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeC----CHHHHHHHHHHhHhcCCcceEEEEe-cccCCCc-ceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVM-NISVQIL-TYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~----S~~~i~~a~~~~~~~~l~~i~~i~~-D~~~~~~-~fdvv~~~v  236 (259)
                      .++.+|||||||+|.++..++++  .+|+|+|+    ++.+++.+.  .+..+.++++|+++ |+.+++. .||+|++++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~  156 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI  156 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence            45789999999999999999998  38999999    565442211  11122246999999 9988654 789888876


Q ss_pred             cCc
Q 025035          237 NEH  239 (259)
Q Consensus       237 ~~h  239 (259)
                      ..+
T Consensus       157 ~~~  159 (305)
T 2p41_A          157 GES  159 (305)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.33  E-value=3.4e-07  Score=76.34  Aligned_cols=59  Identities=15%  Similarity=0.062  Sum_probs=47.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..++    .+|+|+|+|+.               +++++++|+.+.++   .||+|++..+.|
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  126 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM  126 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence            457899999999999998873    48999999986               46788999988654   689777766666


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       127 ~  127 (215)
T 2zfu_A          127 G  127 (215)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.31  E-value=9.5e-07  Score=81.86  Aligned_cols=65  Identities=17%  Similarity=0.090  Sum_probs=49.9

Q ss_pred             CCCEEEEEccC------cChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---------
Q 025035          164 SSWSVLDIGTG------NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---------  226 (259)
Q Consensus       164 ~~~~VLDiGcG------~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---------  226 (259)
                      ++.+|||||||      +|..++.+++.  +..+|+|+|+|+.|.         ....+|+|+++|+.+++         
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            46799999999      67777777764  445999999999872         12247999999998853         


Q ss_pred             cceeEEEeccc
Q 025035          227 LTYFICKSERN  237 (259)
Q Consensus       227 ~~fdvv~~~v~  237 (259)
                      .+||+|++...
T Consensus       287 ~sFDlVisdgs  297 (419)
T 3sso_A          287 GPFDIVIDDGS  297 (419)
T ss_dssp             CCEEEEEECSC
T ss_pred             CCccEEEECCc
Confidence            36998887654

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.29  E-value=6.3e-07  Score=81.17  Aligned_cols=73  Identities=15%  Similarity=0.031  Sum_probs=56.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTF  242 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~~  242 (259)
                      +..+|||||||+|.++..++++. ..+++++|+ +.+++.+++      ..+++++.+|+.+....||+++...+.|...
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~~~~~~D~v~~~~vlh~~~  265 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFKSIPSADAVLLKWVLHDWN  265 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTTCCCCCSEEEEESCGGGSC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCCCCCCceEEEEcccccCCC
Confidence            46799999999999999999983 348999999 688877654      2469999999987333688777766666443


Q ss_pred             c
Q 025035          243 D  243 (259)
Q Consensus       243 D  243 (259)
                      |
T Consensus       266 d  266 (358)
T 1zg3_A          266 D  266 (358)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.28  E-value=6e-07  Score=81.90  Aligned_cols=71  Identities=14%  Similarity=0.065  Sum_probs=54.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      .+..+|||||||+|.++..++++ +..+++++|+ +.+++.++++      .+++|+.+|+.+.....|+++...+.|.
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~~~p~~D~v~~~~vlh~  273 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFDGVPKGDAIFIKWICHD  273 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCCCCCCCCEEEEechhhc
Confidence            34689999999999999999987 3448999999 8888777542      4799999999873223376666666653

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.28  E-value=4.7e-07  Score=81.75  Aligned_cols=77  Identities=16%  Similarity=0.039  Sum_probs=54.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccC-CCcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISV-QILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~-~~~~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..++++. ..+++++|+++ ++.  +++.+..++ .+++|+++|+.+ .+ .||+++...+.|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~~~~~~~~~~~~v~~~~~d~~~~~p-~~D~v~~~~vlh  258 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--RHRLDAPDVAGRWKVVEGDFLREVP-HADVHVLKRILH  258 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--TCCCCCGGGTTSEEEEECCTTTCCC-CCSEEEEESCGG
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--cccccccCCCCCeEEEecCCCCCCC-CCcEEEEehhcc
Confidence            356799999999999999999873 33899999954 544  333333333 359999999964 44 899777666665


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      ...|
T Consensus       259 ~~~d  262 (348)
T 3lst_A          259 NWGD  262 (348)
T ss_dssp             GSCH
T ss_pred             CCCH
Confidence            4433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.26  E-value=1.6e-06  Score=85.81  Aligned_cols=73  Identities=27%  Similarity=0.261  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-------------------------------------------CCcEEEEeCCHHH
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-------------------------------------------FSDLTGVDYSEDA  199 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-------------------------------------------~~~V~giD~S~~~  199 (259)
                      .++.+|||.+||+|.+++.++..+                                           ..+|+|+|+++.|
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            356789999999999999887642                                           1379999999999


Q ss_pred             HHHHHHHhHhcCCcc-eEEEEecccCC--Cc---ceeEEEec
Q 025035          200 INLAQSLANRDGFSC-IKFLVMNISVQ--IL---TYFICKSE  235 (259)
Q Consensus       200 i~~a~~~~~~~~l~~-i~~i~~D~~~~--~~---~fdvv~~~  235 (259)
                      ++.|++|+...|+.+ |+|.++|+.+.  +.   .||+|..+
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence            999999999999975 99999999885  32   56766554

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.22  E-value=7.9e-07  Score=81.76  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ++.+|||+|||+|.++..++++  +..+|+|+|+++.+++.|         .+++++++|+.+...  .||+|.++
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~~fD~Ii~N  105 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGEAFDLILGN  105 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccCCCCEEEEC
Confidence            3569999999999999999986  345999999999998877         368999999988643  78877764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.21  E-value=1.1e-06  Score=79.99  Aligned_cols=71  Identities=11%  Similarity=0.054  Sum_probs=54.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      .+..+|||||||+|.++..++++ +..+++++|+ +.+++.+++.      .+++|+.+|+.+....-|+++...+.|.
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~~~p~~D~v~~~~vlh~  271 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFKEVPSGDTILMKWILHD  271 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCCCCCCCCEEEehHHhcc
Confidence            35689999999999999999987 3448999999 8888776541      4799999999873223377666666653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.03  E-value=7.2e-06  Score=80.05  Aligned_cols=72  Identities=14%  Similarity=0.077  Sum_probs=56.6

Q ss_pred             CCEEEEEccCcChhHHHHHh---cCCC--cEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC--CcceeEEEecc
Q 025035          165 SWSVLDIGTGNGLLLQELSK---QGFS--DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ--ILTYFICKSER  236 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~---~g~~--~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~--~~~fdvv~~~v  236 (259)
                      ...|||+|||+|.+....++   ++..  +|++||.|+ +...+++..+.++..+ |+++++|+++.  |.+.|+|.++.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw  436 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL  436 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence            45799999999998444444   4333  689999998 6677888888888765 99999999995  44899988876


Q ss_pred             c
Q 025035          237 N  237 (259)
Q Consensus       237 ~  237 (259)
                      +
T Consensus       437 M  437 (637)
T 4gqb_A          437 L  437 (637)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.00  E-value=1.2e-05  Score=71.31  Aligned_cols=47  Identities=26%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      .++..|||++||+|.+++.+++.|. +++|+|+++.+++.|++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999886 9999999999999999998764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.99  E-value=7.9e-06  Score=78.49  Aligned_cols=75  Identities=13%  Similarity=-0.012  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHhHhcCCcc-----eEEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANRDGFSC-----IKFLV  219 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g---------------~~~V~giD~S~~~i~~a~~~~~~~~l~~-----i~~i~  219 (259)
                      ++.+|||.|||+|.+++.+++.    +               ..+++|+|+++.+++.|+.++...|+..     +.+.+
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~  248 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL  248 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence            4679999999999999888764    1               1379999999999999999988778754     78899


Q ss_pred             ecccCCC----cceeEEEecccC
Q 025035          220 MNISVQI----LTYFICKSERNE  238 (259)
Q Consensus       220 ~D~~~~~----~~fdvv~~~v~~  238 (259)
                      +|....+    ..||+|+.+--.
T Consensus       249 gDtL~~~~~~~~~fD~Vv~NPPf  271 (541)
T 2ar0_A          249 GNTLGSDGENLPKAHIVATNPPF  271 (541)
T ss_dssp             SCTTSHHHHTSCCEEEEEECCCC
T ss_pred             CCCcccccccccCCeEEEECCCc
Confidence            9987632    378887776543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=97.98  E-value=4e-05  Score=73.64  Aligned_cols=73  Identities=14%  Similarity=0.072  Sum_probs=60.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCC--cceEEEEecccCC--C----cceeE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVMNISVQ--I----LTYFI  231 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l--~~i~~i~~D~~~~--~----~~fdv  231 (259)
                      ++.+|||.+||+|.+++.++++    +...++|+|+++.+++.|+.++...|+  .++.+.++|....  +    ..||+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            5679999999999999888876    234899999999999999999988887  4689999998765  2    26887


Q ss_pred             EEecc
Q 025035          232 CKSER  236 (259)
Q Consensus       232 v~~~v  236 (259)
                      |.++-
T Consensus       301 IvaNP  305 (542)
T 3lkd_A          301 VLMNP  305 (542)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            76654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.94  E-value=1.5e-05  Score=70.28  Aligned_cols=58  Identities=14%  Similarity=0.153  Sum_probs=51.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++.+||.+||.|..+..+++++ .+|+|+|.++.+++.|++ ++.   .+++++++++.++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l   78 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHL   78 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchH
Confidence            457899999999999999999984 499999999999999998 643   4799999999885

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.75  E-value=6.7e-05  Score=63.14  Aligned_cols=59  Identities=10%  Similarity=0.074  Sum_probs=49.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC---cceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l---~~i~~i~~D~~~  224 (259)
                      +.++|||||||  .-++.+++....+|+.||.++...+.|++++++.|+   .+|+++.+|+.+
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            36799999985  677777775335999999999999999999999885   369999999754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.73  E-value=2.2e-05  Score=77.09  Aligned_cols=72  Identities=15%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             CCEEEEEccCcChhHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC----
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ----  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g----------~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~----  225 (259)
                      +..|||||||+|.+....++.    +          ..+|++||.|+.++...+.+.. ++..+ |+++++|+++.    
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999996432221    2          2299999999988766665544 66654 99999999985    


Q ss_pred             ----CcceeEEEeccc
Q 025035          226 ----ILTYFICKSERN  237 (259)
Q Consensus       226 ----~~~fdvv~~~v~  237 (259)
                          +...|++.++.+
T Consensus       489 ~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             ccCCCCcccEEEEecc
Confidence                347888887776

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.71  E-value=3.5e-05  Score=68.37  Aligned_cols=60  Identities=17%  Similarity=0.108  Sum_probs=44.4

Q ss_pred             CCCCEEEEEccCc------ChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEE-EEecccCCCc--ceeE
Q 025035          163 LSSWSVLDIGTGN------GLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF-LVMNISVQIL--TYFI  231 (259)
Q Consensus       163 ~~~~~VLDiGcG~------G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~-i~~D~~~~~~--~fdv  231 (259)
                      .++.+|||+|||+      |.  ..++++ + ..+|+|+|+|+.             +.++++ +++|+.++++  .||+
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~~~fD~  126 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTANKWDL  126 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCSSCEEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCccCcccE
Confidence            3578999999955      65  334443 4 348999999997             136888 9999998654  7998


Q ss_pred             EEeccc
Q 025035          232 CKSERN  237 (259)
Q Consensus       232 v~~~v~  237 (259)
                      |.++..
T Consensus       127 Vvsn~~  132 (290)
T 2xyq_A          127 IISDMY  132 (290)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            888654

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.68  E-value=4.6e-05  Score=69.71  Aligned_cols=70  Identities=13%  Similarity=-0.016  Sum_probs=55.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||+||++|.++..++++|. +|++||+.+ |-..    +.  ..++++++++|+.....   .+|++.++++.+
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~----l~--~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~~  281 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQS----LM--DTGQVTWLREDGFKFRPTRSNISWMVCDMVEK  281 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHH----HH--TTTCEEEECSCTTTCCCCSSCEEEEEECCSSC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChh----hc--cCCCeEEEeCccccccCCCCCcCEEEEcCCCC
Confidence            5689999999999999999999976 999999875 2111    11  12479999999988544   799999998875


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       282 p  282 (375)
T 4auk_A          282 P  282 (375)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.65  E-value=2.8e-05  Score=62.60  Aligned_cols=60  Identities=17%  Similarity=0.026  Sum_probs=47.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~~~v  236 (259)
                      .++.+|||||||.               +++|+|+.|++.|+++...    +++++++|+.++++      .||+|++..
T Consensus        11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEECC
Confidence            4688999999996               2399999999999987642    48999999988543      699888766


Q ss_pred             cCccc
Q 025035          237 NEHYT  241 (259)
Q Consensus       237 ~~h~~  241 (259)
                      ..|+.
T Consensus        72 ~l~~~   76 (176)
T 2ld4_A           72 VPGST   76 (176)
T ss_dssp             STTCC
T ss_pred             hhhhc
Confidence            66554

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.60  E-value=0.00011  Score=70.49  Aligned_cols=72  Identities=14%  Similarity=0.007  Sum_probs=55.3

Q ss_pred             CEEEEEccCcChhHHHHHhc--------C--------CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC--
Q 025035          166 WSVLDIGTGNGLLLQELSKQ--------G--------FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI--  226 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~--------g--------~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~--  226 (259)
                      .+|||.+||+|.+++.+++.        +        ...++|+|+++.+++.|+.++...|+. ++.+.++|....+  
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~  325 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH  325 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence            49999999999998887543        0        237999999999999999999888874 3555788876543  


Q ss_pred             --cceeEEEeccc
Q 025035          227 --LTYFICKSERN  237 (259)
Q Consensus       227 --~~fdvv~~~v~  237 (259)
                        ..||+|+++--
T Consensus       326 ~~~~fD~Iv~NPP  338 (544)
T 3khk_A          326 PDLRADFVMTNPP  338 (544)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             ccccccEEEECCC
Confidence              26887776543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.48  E-value=0.00015  Score=62.85  Aligned_cols=49  Identities=24%  Similarity=0.209  Sum_probs=42.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l  212 (259)
                      .++..|||..||+|..++...+.|. +++|+|+++.+++.++++++..++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence            4678999999999999999999876 999999999999999999876543

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.47  E-value=0.00015  Score=72.31  Aligned_cols=73  Identities=11%  Similarity=-0.032  Sum_probs=53.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcC----CCcEEEEeCCHHHHHHH--HHHhHh----cCCcceEEEEecccCC----Ccce
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLA--QSLANR----DGFSCIKFLVMNISVQ----ILTY  229 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g----~~~V~giD~S~~~i~~a--~~~~~~----~~l~~i~~i~~D~~~~----~~~f  229 (259)
                      ++.+|||.|||+|.++..++++.    ..+++|+|+++.+++.|  +.++..    .++....+...|+...    ...|
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF  400 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV  400 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence            46799999999999999998862    23799999999999999  555543    2333345666677652    2368


Q ss_pred             eEEEecc
Q 025035          230 FICKSER  236 (259)
Q Consensus       230 dvv~~~v  236 (259)
                      |+|.++-
T Consensus       401 DVVIgNP  407 (878)
T 3s1s_A          401 SVVVMNP  407 (878)
T ss_dssp             EEEEECC
T ss_pred             CEEEECC
Confidence            8766544

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.47  E-value=0.00061  Score=60.45  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=61.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--C---CcceEEEEecccCCC----cceeEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVMNISVQI----LTYFIC  232 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~---l~~i~~i~~D~~~~~----~~fdvv  232 (259)
                      ..+++||-||.|.|..+..+++. +..+|+.||+.+.+++.+++.+...  +   -++++++.+|.....    ..||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            34789999999999999999997 4569999999999999999986431  1   247999999998843    278987


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.+...
T Consensus       162 i~D~~d  167 (294)
T 3o4f_A          162 ISDCTD  167 (294)
T ss_dssp             EESCCC
T ss_pred             EEeCCC
Confidence            766543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.20  E-value=0.0016  Score=62.35  Aligned_cols=74  Identities=20%  Similarity=0.025  Sum_probs=56.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g----------~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--  227 (259)
                      ++.+|+|.+||+|.++....++    .          ...++|+|+++.+...|+-+.-.+|+....+.++|....+.  
T Consensus       217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~  296 (530)
T 3ufb_A          217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLRE  296 (530)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGG
T ss_pred             CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhh
Confidence            4679999999999999877653    1          13699999999999999998887787656677777665322  


Q ss_pred             -----ceeEEEeccc
Q 025035          228 -----TYFICKSERN  237 (259)
Q Consensus       228 -----~fdvv~~~v~  237 (259)
                           .||+|..+--
T Consensus       297 ~~~~~~fD~Il~NPP  311 (530)
T 3ufb_A          297 MGDKDRVDVILTNPP  311 (530)
T ss_dssp             CCGGGCBSEEEECCC
T ss_pred             hcccccceEEEecCC
Confidence                 5787765543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.13  E-value=0.00083  Score=61.24  Aligned_cols=78  Identities=17%  Similarity=0.003  Sum_probs=61.4

Q ss_pred             hccCCCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCC------cceEEEEecccCCC----c
Q 025035          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVMNISVQI----L  227 (259)
Q Consensus       159 l~~~~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l------~~i~~i~~D~~~~~----~  227 (259)
                      +-...++.+|||+++|.|.-+..++..+. ..|+++|+++.-++..++++++.+.      .++...+.|.....    .
T Consensus       143 ~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~  222 (359)
T 4fzv_A          143 ALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGD  222 (359)
T ss_dssp             HHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTT
T ss_pred             HhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccc
Confidence            33446788999999999999999988743 3799999999999999999988764      25888888887742    3


Q ss_pred             ceeEEEecc
Q 025035          228 TYFICKSER  236 (259)
Q Consensus       228 ~fdvv~~~v  236 (259)
                      .||.|+.+.
T Consensus       223 ~fD~VLlDa  231 (359)
T 4fzv_A          223 TYDRVLVDV  231 (359)
T ss_dssp             CEEEEEEEC
T ss_pred             cCCEEEECC
Confidence            688665443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.04  E-value=0.00095  Score=57.41  Aligned_cols=75  Identities=12%  Similarity=0.099  Sum_probs=53.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe-cccCC-CcceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM-NISVQ-ILTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~-D~~~~-~~~fdvv~~~v~~  238 (259)
                      .++.+||||||++|.++...+.+ |..+|+|+|+-..-.+.- ...+..|-..++|+.+ |+... +.++|++++++-+
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~~~~~DtllcDIge  154 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLPPEKCDTLLCDIGE  154 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCCCCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecCCccccEEEEecCC
Confidence            56789999999999999988876 666899999876322100 0012234335999999 97654 3488888888766

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.92  E-value=0.00017  Score=63.41  Aligned_cols=75  Identities=9%  Similarity=-0.038  Sum_probs=48.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe--cccCCC-cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM--NISVQI-LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~--D~~~~~-~~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..++++ +...|+|+|++..+...+... +..+ .++.....  |+..++ ..+|+|++++..
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv~~l~~~~~DvVLSDmAp  166 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDVFNMEVIPGDTLLCDIGE  166 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcchhhcCCCCcCEEEecCcc
Confidence            46779999999999999988865 666899999987542222110 0112 14333332  444433 378988888876


Q ss_pred             c
Q 025035          239 H  239 (259)
Q Consensus       239 h  239 (259)
                      +
T Consensus       167 n  167 (282)
T 3gcz_A          167 S  167 (282)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.81  E-value=0.0024  Score=58.02  Aligned_cols=58  Identities=12%  Similarity=0.028  Sum_probs=49.5

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +..|||||.|.|.++..|+++ ...+|+++|+.+..+...++.. .  ..+++++.+|+.+.
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCccch
Confidence            578999999999999999986 3358999999999999998876 2  24799999999654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.80  E-value=0.00033  Score=61.48  Aligned_cols=75  Identities=16%  Similarity=0.110  Sum_probs=47.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEeccc--CCC-cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNIS--VQI-LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~--~~~-~~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.++..++++ +...|+|+|++..+....... ...+. ++..++.++.  .+. ..+|+|.+++..
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCCCCccEEEecCcc
Confidence            45679999999999999988876 556889999885431000000 01121 4455555542  222 278888888866


Q ss_pred             c
Q 025035          239 H  239 (259)
Q Consensus       239 h  239 (259)
                      +
T Consensus       151 n  151 (277)
T 3evf_A          151 S  151 (277)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.80  E-value=0.0028  Score=55.81  Aligned_cols=73  Identities=8%  Similarity=-0.062  Sum_probs=55.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----C--CCcEEEEeCCHH--------------------------HHHHHHHHhHhcC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSED--------------------------AINLAQSLANRDG  211 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g--~~~V~giD~S~~--------------------------~i~~a~~~~~~~~  211 (259)
                      .++.|||+||..|..++.++..    +  ..+|+++|..+.                          .++.+++++++.|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            4679999999999998887653    1  358999996421                          4678899999998


Q ss_pred             C--cceEEEEecccCC-C----cceeEEEecc
Q 025035          212 F--SCIKFLVMNISVQ-I----LTYFICKSER  236 (259)
Q Consensus       212 l--~~i~~i~~D~~~~-~----~~fdvv~~~v  236 (259)
                      +  .+|+++.+++.+. +    ..||+++.+.
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDa  217 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDG  217 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEECC
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcC
Confidence            7  4699999998772 1    2577666554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=96.66  E-value=0.0025  Score=58.37  Aligned_cols=75  Identities=17%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-----CC---cceEEEEecccCCC-------c
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----GF---SCIKFLVMNISVQI-------L  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-----~l---~~i~~i~~D~~~~~-------~  227 (259)
                      .++++||-||.|.|..+..+++.+..+|+.||+.+.+++.+++.+...     ..   ++++++.+|.....       .
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            356899999999999999999986679999999999999999975321     11   24889999987532       2


Q ss_pred             ceeEEEeccc
Q 025035          228 TYFICKSERN  237 (259)
Q Consensus       228 ~fdvv~~~v~  237 (259)
                      .||+|+.+..
T Consensus       284 ~yDvIIvDl~  293 (381)
T 3c6k_A          284 EFDYVINDLT  293 (381)
T ss_dssp             CEEEEEEECC
T ss_pred             ceeEEEECCC
Confidence            6898776654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.56  E-value=0.0019  Score=57.25  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=49.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe-cccCCC-cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM-NISVQI-LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~-D~~~~~-~~fdvv~~~v~~  238 (259)
                      .++.+||||||++|.++...+.+ |..+|+|+|+-..-.+.-+ ..+..+-.-++|+.+ |+..++ ..+|++.+++-+
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w~lV~~~~~~Dv~~l~~~~~D~ivcDige  170 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGWNIVTMKSGVDVFYRPSECCDTLLCDIGE  170 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTGGGEEEECSCCTTSSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCCcceEEEeccCHhhCCCCCCCEEEEECcc
Confidence            46779999999999999987776 6668999999764110000 001112113778877 776654 367777666654

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.50  E-value=0.0027  Score=55.06  Aligned_cols=72  Identities=14%  Similarity=0.067  Sum_probs=48.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-------CC------CcEEEEeCCH---HHHH-----------HHHHHhHhc------
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-------GF------SDLTGVDYSE---DAIN-----------LAQSLANRD------  210 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-------g~------~~V~giD~S~---~~i~-----------~a~~~~~~~------  210 (259)
                      ++.+|||||||+|..+..+++.       +.      .+++++|..+   ..+.           .++++.+..      
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            3569999999999988876542       22      3899999765   5544           556655431      


Q ss_pred             --------CCcceEEEEecccCC-C---c----ceeEEEec
Q 025035          211 --------GFSCIKFLVMNISVQ-I---L----TYFICKSE  235 (259)
Q Consensus       211 --------~l~~i~~i~~D~~~~-~---~----~fdvv~~~  235 (259)
                              +..+++++.+|+.+. +   .    .||+++.+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD  180 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLD  180 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEEC
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEEC
Confidence                    223688999998772 1   1    47766654

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.48  E-value=0.0028  Score=57.21  Aligned_cols=56  Identities=16%  Similarity=0.125  Sum_probs=47.4

Q ss_pred             CEEEEEccCcChhHHHHHhcC--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          166 WSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .+|||+.||.|.+++.+.+.|  +..|.++|+++.+++..+.|..     +..++++|+.+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~   60 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGIT   60 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHcc
Confidence            489999999999999999998  4579999999999999998864     3456788888753

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.36  E-value=0.0061  Score=55.74  Aligned_cols=56  Identities=21%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .+|||+.||.|.++..+.+.|+..|.++|+++.+++..+.|..     +..++++|+.+..
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~   58 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLN   58 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcC
Confidence            4899999999999999999998778899999999988887642     5678889988753

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.35  E-value=0.0064  Score=54.85  Aligned_cols=59  Identities=19%  Similarity=0.089  Sum_probs=49.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++..++|..||.|..+..++++ + ..+|+|+|.++.+++.++ ++   .-.++++++++..++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l  116 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSAL  116 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGH
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHH
Confidence            46789999999999999999987 3 348999999999999984 33   224799999998874

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.20  E-value=0.012  Score=54.16  Aligned_cols=63  Identities=21%  Similarity=0.191  Sum_probs=51.3

Q ss_pred             CCCCEEEEEccCcChhHHHHH-hc-C-CCcEEEEeCCHHHHHHHHHHhHh---cCC-cceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELS-KQ-G-FSDLTGVDYSEDAINLAQSLANR---DGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la-~~-g-~~~V~giD~S~~~i~~a~~~~~~---~~l-~~i~~i~~D~~~~  225 (259)
                      .++..|+|||++.|.++..++ +. + ..+|+++|+++...+..+++.+.   ++. .+++++..-+.+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~~  294 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGEN  294 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECSS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEECC
Confidence            567899999999999999988 44 3 25999999999999999999987   245 5788777655553

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.05  E-value=0.012  Score=52.66  Aligned_cols=56  Identities=13%  Similarity=0.056  Sum_probs=46.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .+.+|||+.||.|.++..+.+.|+..|.++|+++.+++..+.+....    .   ++|+.+..
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~   65 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVN   65 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSC
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcC
Confidence            35799999999999999999999878999999999999999886421    1   57777643

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.93  E-value=0.0072  Score=53.92  Aligned_cols=60  Identities=7%  Similarity=-0.082  Sum_probs=49.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .++..|||..||+|..+....+.|. +.+|+|+++..++.+++++++.+. ....++.|+.+
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~  310 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYNR  310 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHHH
Confidence            4678999999999999999998876 999999999999999999876654 34444555544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.78  E-value=0.0025  Score=55.34  Aligned_cols=74  Identities=11%  Similarity=0.100  Sum_probs=45.6

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEe-cccCCCc-ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVM-NISVQIL-TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~-D~~~~~~-~fdvv~~~v~~  238 (259)
                      .++.+|||+||+.|.+++..+++ +...|.|.++.... . ....... .|..-+.|+++ |+.++.. .+|+|++++..
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~DvVLSDMAP  149 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKPSEISDTLLCDIGE  149 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCCCCCCCEEEeCCCC
Confidence            56889999999999999999987 22233444443320 0 0000000 12212466667 9988654 78999888865

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.56  E-value=0.012  Score=52.62  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCH---HHHHHHHHHhHhcC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDG  211 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~---~~i~~a~~~~~~~~  211 (259)
                      .++..|||.-||+|..+....+.|. +.+|+|+++   ..++.+++++...+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            4678999999999999999998876 999999999   99999999987654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=94.93  E-value=0.019  Score=50.83  Aligned_cols=75  Identities=16%  Similarity=0.024  Sum_probs=46.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEe--cccCCC-cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVM--NISVQI-LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~--D~~~~~-~~fdvv~~~v~~  238 (259)
                      .++.+||||||++|.++..++++ +...|+|+|+...+...... ....+ .++.....  |+..+. ..+|++.+++..
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~l~~~~~DlVlsD~AP  157 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFTMPTEPSDTLLCDIGE  157 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccC-CceEEeecCceeeecCCCCcCEEeecCcC
Confidence            56789999999999999999986 66689999997643111000 00011 13332322  443332 278888887766


Q ss_pred             c
Q 025035          239 H  239 (259)
Q Consensus       239 h  239 (259)
                      +
T Consensus       158 n  158 (300)
T 3eld_A          158 S  158 (300)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=94.83  E-value=0.046  Score=48.22  Aligned_cols=54  Identities=20%  Similarity=0.249  Sum_probs=45.9

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      +|||+-||.|.+...|-+.|+.-|.++|+++.+++.-+.|..      -+++++|+.++.
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~   55 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------AKLIKGDISKIS   55 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCC
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCC
Confidence            799999999999999999999778899999999888877642      356789998854

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=94.80  E-value=0.017  Score=50.85  Aligned_cols=69  Identities=9%  Similarity=-0.078  Sum_probs=56.2

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----C--cceeEEEecc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----I--LTYFICKSER  236 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~--~~fdvv~~~v  236 (259)
                      +..+||+-+|+|.+++.+.+.+ .+++.+|.++..++..+++++..  .++++++.|....     +  ..||+|+.+-
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            5679999999999999999965 69999999999999999988652  4699999997651     1  1588776554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.49  E-value=0.14  Score=46.60  Aligned_cols=80  Identities=14%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             CCEEEEEccCcChhHHHHHhc------------C----CCcEEEEeCCHHHHHHHHHHhHhc-----------CC-cceE
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ------------G----FSDLTGVDYSEDAINLAQSLANRD-----------GF-SCIK  216 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~------------g----~~~V~giD~S~~~i~~a~~~~~~~-----------~l-~~i~  216 (259)
                      +.+|+|+|||+|..++.+...            +    .-+|+.-|.....-...=+.+...           +. .+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            578999999999999887432            1    115666676554433332222110           00 0111


Q ss_pred             EEE---ecccCC---CcceeEEEecccCccccce
Q 025035          217 FLV---MNISVQ---ILTYFICKSERNEHYTFDL  244 (259)
Q Consensus       217 ~i~---~D~~~~---~~~fdvv~~~v~~h~~~D~  244 (259)
                      |+.   +....-   ..++|++++...+|+..++
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~  166 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQV  166 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSC
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccC
Confidence            222   222221   2278888888888887643

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.16  E-value=0.035  Score=49.79  Aligned_cols=56  Identities=18%  Similarity=0.161  Sum_probs=45.8

Q ss_pred             CEEEEEccCcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          166 WSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .+++|+.||.|.+...+.+.|.  .-|.++|+++.+++..+.|..     +..++++|+.+..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~   61 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLT   61 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCC
Confidence            4799999999999999998886  468899999999988887753     3446678888753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.06  E-value=0.042  Score=49.21  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=45.4

Q ss_pred             CCEEEEEccCcChhHHHHHhcCC--CcE-EEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGF--SDL-TGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~--~~V-~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ..+++|+.||.|.+...+.+.|.  ..| .++|+++.+++..+.|...     . ++++|+.+..
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~   68 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSIS   68 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcC
Confidence            45899999999999999999884  456 7999999999988887632     1 5677887753

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=93.85  E-value=0.14  Score=45.01  Aligned_cols=58  Identities=17%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCc--EEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~--V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ...++||+.||.|.+...+.+.|+.-  |.++|+++.+++..+.+..     +..++++|+.+..
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~   74 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVT   74 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCC
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHcc
Confidence            45689999999999999999998854  6899999999888777642     4567889998854

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=93.67  E-value=0.21  Score=45.63  Aligned_cols=77  Identities=10%  Similarity=-0.038  Sum_probs=50.2

Q ss_pred             CCEEEEEccCcChhHHHHHhc------------------CCCcEEEEeCC-----------HHHHHHHHHHhHhcCC-cc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ------------------GFSDLTGVDYS-----------EDAINLAQSLANRDGF-SC  214 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~------------------g~~~V~giD~S-----------~~~i~~a~~~~~~~~l-~~  214 (259)
                      ..+|+|+|||+|..++.+...                  +.-+|+.-|..           +.+.+.+++   ..|. .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            468999999999999887765                  11167788876           444443322   1221 13


Q ss_pred             eEEEEecccCC------CcceeEEEecccCccccce
Q 025035          215 IKFLVMNISVQ------ILTYFICKSERNEHYTFDL  244 (259)
Q Consensus       215 i~~i~~D~~~~------~~~fdvv~~~v~~h~~~D~  244 (259)
                      -.|+.+.-...      ..++|++++...+|...++
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~  165 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQV  165 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSS
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCC
Confidence            45666544441      2289999999999987765

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.30  E-value=0.28  Score=42.12  Aligned_cols=61  Identities=18%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|. +|+.+|.+++.++...+.++..|. ++.++++|+.+.
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~   68 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKK   68 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            368899999988876   5667777787 899999999999888888777764 789999999884

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.69  E-value=0.58  Score=42.78  Aligned_cols=79  Identities=13%  Similarity=0.084  Sum_probs=49.4

Q ss_pred             CCEEEEEccCcChhHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSE  235 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~--------g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~  235 (259)
                      +-.|+|+|.|.|.++.-+.+.        ...+++.||+|+...+.-++++...  .+|+|.. ++.+++. .-.++..+
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~~-~l~~lp~~~~~viANE  157 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWHD-SFEDVPEGPAVILANE  157 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEES-SGGGSCCSSEEEEEES
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEeC-ChhhcCCCCeEEEecc
Confidence            347999999999998776643        1227999999997777555555433  2577653 3333332 33345555


Q ss_pred             ccCccccceee
Q 025035          236 RNEHYTFDLYQ  246 (259)
Q Consensus       236 v~~h~~~D~i~  246 (259)
                      ++.-.+.+.+.
T Consensus       158 ~fDAlPv~~~~  168 (387)
T 1zkd_A          158 YFDVLPIHQAI  168 (387)
T ss_dssp             SGGGSCCEEEE
T ss_pred             ccccCceEEEE
Confidence            55555555543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=92.12  E-value=0.12  Score=48.70  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++||+.||.|.+...|.+.|+.-|.++|+++.+++.-+.+....  +...++++|+.+.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i  146 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDI  146 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhh
Confidence            4589999999999999999988867899999999988888765211  2345677888764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.10  E-value=0.57  Score=39.47  Aligned_cols=62  Identities=19%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcc-CcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGT-GNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGc-G~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|+ |.|.   ++..|+++|. +|+.++.++..++...+.+...+..++.++.+|+.+.
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   85 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTST   85 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCH
Confidence            45788999987 5554   5666777787 8999999998887777766555444799999999884

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=91.70  E-value=0.83  Score=38.61  Aligned_cols=61  Identities=20%  Similarity=0.176  Sum_probs=48.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   72 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDD   72 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCH
Confidence            357889999987775   4666777787 899999999888877777665553 789999999884

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=91.17  E-value=0.77  Score=39.77  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=47.3

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++.+.+.+...+. ++.++.+|+.+.
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~   92 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHL   92 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence            357889999887664   4556666687 899999999888887777766553 789999999884

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.09  E-value=0.85  Score=38.00  Aligned_cols=60  Identities=17%  Similarity=0.262  Sum_probs=45.9

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ .++.++.+|+.+.
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   70 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDP   70 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            57789988876653   4556666687 89999999988887777666554 3688999999884

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=91.03  E-value=0.63  Score=39.74  Aligned_cols=61  Identities=11%  Similarity=0.128  Sum_probs=45.2

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++.+.+.+...+..++.++.+|+.+.
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~   74 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDP   74 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSC
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCc
Confidence            46788888876553   4555566687 9999999998877776666555444799999999886

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.01  E-value=0.52  Score=39.72  Aligned_cols=60  Identities=13%  Similarity=0.172  Sum_probs=46.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   68 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNE   68 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCH
Confidence            57789988887764   4566666787 899999998888777776665553 799999999884

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=91.01  E-value=0.35  Score=41.59  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|. +|+.+|.+++.++.+.+.+...+. ++.++++|+.+.
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~   70 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDE   70 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCH
Confidence            468888888888775   5677777787 999999999988888777776664 788899999883

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.74  E-value=0.27  Score=44.50  Aligned_cols=44  Identities=16%  Similarity=0.112  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||.+|||. |.++..+++. |..+|+++|.|+..++.+++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            35688999999986 8888888886 76689999999988887764

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.52  E-value=0.78  Score=38.80  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++.++..++.+.+.+...+..++.++.+|+.+.
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~   72 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR   72 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCH
Confidence            357788888876554   4555666687 9999999998888777766655534789999999884

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.41  E-value=0.39  Score=42.91  Aligned_cols=45  Identities=31%  Similarity=0.351  Sum_probs=37.0

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      ..++.+||-+|||. |..+..+++. |..+|+++|.++..++.+++.
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            35688999999986 8888888876 765799999999988888763

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.36  E-value=0.88  Score=38.50  Aligned_cols=62  Identities=13%  Similarity=0.136  Sum_probs=48.9

Q ss_pred             CCCCEEEEEccCc--Ch---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGN--GL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~--G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|+++  |.   ++..|++.|. +|+.++.++..++.+.+.++..+-.++.++++|+.+.
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSD   70 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCH
Confidence            4688999999643  42   5777788887 9999999998888888777666545788999999874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.18  E-value=0.91  Score=38.20  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=46.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ .++.++.+|+.+.
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~   73 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDE   73 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCH
Confidence            357788888877664   4555666687 89999999988877777666555 3789999999884

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=90.05  E-value=0.99  Score=37.42  Aligned_cols=60  Identities=23%  Similarity=0.325  Sum_probs=45.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+..+..+. ++.++.+|+.+.
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   66 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDI   66 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCH
Confidence            46788888866553   4555666687 899999999888877777666553 789999999874

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=89.86  E-value=1.3  Score=37.33  Aligned_cols=62  Identities=15%  Similarity=0.069  Sum_probs=46.3

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++.+.+.+.. .+..++.++.+|+.+.
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~   71 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDA   71 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCH
Confidence            357889999887664   4566666787 899999999888777666654 4433589999999884

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.76  E-value=1  Score=38.42  Aligned_cols=60  Identities=15%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|++.|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~   65 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDR   65 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCH
Confidence            36788888877654   4555666687 899999999888877777665553 688999999874

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=89.73  E-value=1  Score=41.75  Aligned_cols=77  Identities=18%  Similarity=0.293  Sum_probs=48.9

Q ss_pred             CCEEEEEccCcChhHHHHHhc----C--CCcEEEEeCCHHHHHHHHHHhHhc--CC-cceEEEEecccCCCcce--eEEE
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRD--GF-SCIKFLVMNISVQILTY--FICK  233 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g--~~~V~giD~S~~~i~~a~~~~~~~--~l-~~i~~i~~D~~~~~~~f--dvv~  233 (259)
                      ..+|+|+|.|+|.++.-+.+.    +  ..+++.||+|+...+.-++++...  .+ .+|+|.. +   ++..+  .++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~-~---lP~~~~g~iiA  213 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD-A---LPERFEGVVVG  213 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES-S---CCSCEEEEEEE
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc-c---CCccCceEEEe
Confidence            358999999999987766643    2  237999999998877777766532  11 2577753 2   33222  3455


Q ss_pred             ecccCcccccee
Q 025035          234 SERNEHYTFDLY  245 (259)
Q Consensus       234 ~~v~~h~~~D~i  245 (259)
                      .+++.-.+.+.+
T Consensus       214 NE~fDAlPv~~~  225 (432)
T 4f3n_A          214 NEVLDAMPVRLV  225 (432)
T ss_dssp             ESCGGGSCCEEE
T ss_pred             ehhhccCceeEE
Confidence            555555555554

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=89.72  E-value=1  Score=37.90  Aligned_cols=61  Identities=13%  Similarity=0.120  Sum_probs=45.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   90 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHS   90 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCH
Confidence            356788888876553   3445555677 899999999888877777665553 689999999874

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=89.60  E-value=1.1  Score=38.28  Aligned_cols=60  Identities=12%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~   85 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTST   85 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            46789988877664   4556666787 899999999888777776665553 689999999874

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.56  E-value=0.81  Score=38.50  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=45.2

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++.|.   ++..|+++|. +|+.++.++..++.+.+.+...+ .++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   67 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNT   67 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            46788888876654   4555666687 89999999988887777665444 3689999999884

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.37  E-value=0.49  Score=42.67  Aligned_cols=44  Identities=18%  Similarity=0.162  Sum_probs=36.4

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|||. |.++..+++. |..+|+++|.++..++.+++
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            35688999999875 8888888886 76579999999998888865

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=89.27  E-value=1.5  Score=37.22  Aligned_cols=61  Identities=16%  Similarity=0.167  Sum_probs=45.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S------------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.+|.+            ...++.+.......+ .++.++.+|+.+.
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   83 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDR   83 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence            357889988877664   4556666787 89999987            666666666665555 3789999999884

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=89.24  E-value=1.1  Score=33.75  Aligned_cols=51  Identities=18%  Similarity=0.249  Sum_probs=36.3

Q ss_pred             CCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+|+-+|||  .++..++    +.|. +|+++|.++..++.+++    .   .+.++.+|..+.
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~----~---~~~~~~gd~~~~   60 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLED----E---GFDAVIADPTDE   60 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEECCTTCH
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHH----C---CCcEEECCCCCH
Confidence            4579999985  4544444    4476 89999999988776654    2   357788888763

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.85  E-value=1.6  Score=37.16  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=45.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-------------CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-------------S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+++|.             ++..++...+.....+. ++.++.+|+.+.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   89 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDD   89 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence            457889988887664   4566666787 8999998             67777777666655553 688999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=88.83  E-value=1.7  Score=36.04  Aligned_cols=60  Identities=15%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~   74 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNT   74 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCH
Confidence            46788888765443   3344455576 89999999877766555554444 2689999999873

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=88.79  E-value=1.5  Score=37.10  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=44.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S------------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+++|.+            +..++...+.....+. ++.++.+|+.+.
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   86 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDR   86 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCH
Confidence            357889988876654   4566666787 89999987            6666666655555553 799999999874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=88.77  E-value=1.4  Score=37.80  Aligned_cols=60  Identities=17%  Similarity=0.188  Sum_probs=45.1

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ .++.++.+|+.+.
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~   89 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDE   89 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            46788888877654   4555666687 99999999988877776665444 3688999999884

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=88.75  E-value=1.6  Score=37.18  Aligned_cols=61  Identities=15%  Similarity=0.202  Sum_probs=44.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC----------------HHHHHHHHHHhHhcCCcceEEEEeccc
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS----------------EDAINLAQSLANRDGFSCIKFLVMNIS  223 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S----------------~~~i~~a~~~~~~~~l~~i~~i~~D~~  223 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+++|.+                +..++...+.....+ .++.++.+|+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   86 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVR   86 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTT
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCC
Confidence            357889999887764   4666667787 89999987                666666655555444 36899999998


Q ss_pred             CC
Q 025035          224 VQ  225 (259)
Q Consensus       224 ~~  225 (259)
                      +.
T Consensus        87 ~~   88 (286)
T 3uve_A           87 DY   88 (286)
T ss_dssp             CH
T ss_pred             CH
Confidence            73

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=88.74  E-value=1.6  Score=37.54  Aligned_cols=61  Identities=15%  Similarity=0.151  Sum_probs=45.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S------------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|++.|. +|+++|.+            +..++...+.+...+. ++.++.+|+.+.
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~  101 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDF  101 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCH
Confidence            357889999887764   4566667787 89999987            6666666655555553 789999999884

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=88.65  E-value=1.4  Score=36.88  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=45.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...  +..++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   71 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDC   71 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCH
Confidence            46788888877664   4556666687 8999999998887777665543  224688999999883

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=88.58  E-value=1.2  Score=37.92  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=43.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+..++.++.+|+.+.
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   90 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDM   90 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCH
Confidence            46788888765443   3344555676 8999999998877666655544434688999999873

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.58  E-value=0.62  Score=41.38  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4688999999885 7788888875 66589999999988887765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=88.47  E-value=1.9  Score=35.93  Aligned_cols=60  Identities=12%  Similarity=0.170  Sum_probs=43.5

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~   68 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADR   68 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            46788888876553   3455556677 899999998877766665554442 688999999873

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=88.45  E-value=0.72  Score=39.98  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=46.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+..++.++.+|+.+.
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~  103 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDP  103 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCH
Confidence            357788888876654   4555666687 9999999988777776666555534789999999884

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.43  E-value=1.8  Score=36.54  Aligned_cols=61  Identities=20%  Similarity=0.214  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.++..+. ++.++.+|+.+.
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~   92 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNR   92 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCH
Confidence            356788888865443   3344445576 899999998877766665555442 689999999873

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=88.35  E-value=1.8  Score=36.80  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=46.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC--cceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l--~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.+|.++..++...+.+...+.  .++.++.+|+.+.
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~   75 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNE   75 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCH
Confidence            357889988876654   4556666687 899999999888777776665543  2689999999884

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.30  E-value=1  Score=38.44  Aligned_cols=61  Identities=15%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~   93 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQP   93 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence            457889988877654   4556666687 899999998887777766665553 688999999884

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.18  E-value=2  Score=37.46  Aligned_cols=61  Identities=20%  Similarity=0.342  Sum_probs=46.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++.+.+.+...+. .++.++.+|+.+.
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~   71 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASR   71 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCH
Confidence            57789999987765   4556666687 899999999888877776655443 2689999999884

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=88.11  E-value=1.8  Score=36.30  Aligned_cols=60  Identities=17%  Similarity=0.299  Sum_probs=43.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   68 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSE   68 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCH
Confidence            46788988876554   3455556677 899999998877766665554442 688999999874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=88.07  E-value=2  Score=36.56  Aligned_cols=60  Identities=15%  Similarity=0.179  Sum_probs=42.9

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~   83 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSV   83 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCH
Confidence            46788888876553   3445555676 899999998877766555554442 688899999873

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.05  E-value=2  Score=36.34  Aligned_cols=60  Identities=15%  Similarity=0.254  Sum_probs=43.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   82 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSR   82 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCH
Confidence            56788988876553   3455555687 899999998877766555544443 688999999873

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.02  E-value=2  Score=35.95  Aligned_cols=60  Identities=18%  Similarity=0.310  Sum_probs=42.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   70 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSR   70 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCH
Confidence            46788888866543   3445556687 899999998877666555544442 688999999874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=87.99  E-value=1.3  Score=37.73  Aligned_cols=61  Identities=18%  Similarity=0.245  Sum_probs=45.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~   89 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDA   89 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCH
Confidence            356788888766554   4555666687 999999999888777776665553 688899999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=87.89  E-value=1.4  Score=36.88  Aligned_cols=59  Identities=14%  Similarity=0.260  Sum_probs=43.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecc
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI  222 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~  222 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+..++.++..|+
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~   71 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDL   71 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCT
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEec
Confidence            357889988876654   4555666687 8999999998877776665544333678899998

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=87.79  E-value=1.6  Score=36.07  Aligned_cols=59  Identities=14%  Similarity=0.234  Sum_probs=44.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecc
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNI  222 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~  222 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+..++.++..|+
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~   73 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNL   73 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCT
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEecc
Confidence            357788888876553   3455566687 8999999998888887777666544678888877

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.74  E-value=0.82  Score=40.19  Aligned_cols=42  Identities=24%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |. +|+++|.++..++.+++
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            4688999999985 8888888886 76 99999999998888765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=87.74  E-value=1  Score=39.74  Aligned_cols=42  Identities=19%  Similarity=0.118  Sum_probs=34.8

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |. +|++++.++.-++.+++
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  218 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS  218 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh
Confidence            5688999999875 7778888876 76 99999999988887765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=87.72  E-value=1.7  Score=36.43  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=46.3

Q ss_pred             CCCCEEEEEccC--cCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTG--NGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG--~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .++++||-.|++  .|.   ++..|+++|. +|+.++.++...+.+++..+..+..++.++.+|+.+..
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   72 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDA   72 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHH
Confidence            357889999976  334   5667777787 89999998766666666655554336899999998853

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=87.55  E-value=1.4  Score=37.34  Aligned_cols=62  Identities=13%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~~  226 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++.++..++.+.+.+.. .+ .++.++.+|+.+..
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~   83 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPD   83 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHH
Confidence            357788888876654   4556666687 899999999888777665544 34 36899999999854

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=87.49  E-value=2.3  Score=36.04  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-------------CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-------------S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.+|.             ++..++...+.....+ .++.++.+|+.+.
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   85 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN-RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence            357889988877664   4566667787 8999998             6767666666555554 3689999999884

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=87.37  E-value=0.83  Score=40.42  Aligned_cols=44  Identities=20%  Similarity=0.226  Sum_probs=36.4

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++..++.+++.
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            5688999999875 7788888886 666899999999888888764

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=87.31  E-value=1.1  Score=38.42  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=42.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.....+...+.++.+|+.+.
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   95 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDP   95 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCH
Confidence            47788888876554   4455556687 8999999998877766655443322468999999884

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=87.26  E-value=1.6  Score=37.19  Aligned_cols=61  Identities=16%  Similarity=0.155  Sum_probs=43.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~  225 (259)
                      .+++++|-.|++.|.   ++..|+++|. +|+.++.+...++...+.... .+ .++.++.+|+.+.
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAP   89 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence            457889998877654   4555666677 999999998776655554432 33 3689999999884

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=87.18  E-value=2.2  Score=35.87  Aligned_cols=60  Identities=23%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc--CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~--~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...  + .++.++.+|+.+.
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   76 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVSDE   76 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTT-CCEEEEECCTTSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEEccCCCH
Confidence            46788988876553   4455566677 8999999987776665554433  3 3688999999874

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=87.11  E-value=2.5  Score=35.85  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S------------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.+|.+            ...++...+.....+ .++.++.+|+.+.
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   83 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTG-RRCISAKVDVKDR   83 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcC-CeEEEEeCCCCCH
Confidence            357889999877664   4556666687 89999986            556665555555555 3789999999884

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=87.09  E-value=0.33  Score=43.95  Aligned_cols=80  Identities=11%  Similarity=0.044  Sum_probs=52.1

Q ss_pred             CCEEEEEccCcChhHHHHHhc------------C---C--CcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEe---ccc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ------------G---F--SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVM---NIS  223 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~------------g---~--~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~---D~~  223 (259)
                      ..+|+|+||++|..++.+...            +   .  -+|+.-|.........-+.+..... .+..|+.+   .+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            467999999999888766554            1   1  1788999888877777665542110 02244444   333


Q ss_pred             CCC---cceeEEEecccCccccce
Q 025035          224 VQI---LTYFICKSERNEHYTFDL  244 (259)
Q Consensus       224 ~~~---~~fdvv~~~v~~h~~~D~  244 (259)
                      .-.   .++|++++...+|...++
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~  155 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQV  155 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSC
T ss_pred             hccCCCCceEEEEehhhhhhcccC
Confidence            322   278888888888887653

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=86.98  E-value=0.91  Score=40.25  Aligned_cols=62  Identities=13%  Similarity=0.021  Sum_probs=41.4

Q ss_pred             CCCCEEEEEcc------CcChhHHHHHhcCC--CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEE
Q 025035          163 LSSWSVLDIGT------GNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFIC  232 (259)
Q Consensus       163 ~~~~~VLDiGc------G~G~~~~~la~~g~--~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv  232 (259)
                      ..+.+|||+|+      -.|.+  .+.+.+.  ..|+++|+.+-..           ..+ .++++|+.+..  .+||+|
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~~k~DLV  173 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHTANKWDLI  173 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEESSCEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC-eEEEccccccccCCCCCEE
Confidence            46899999996      56663  2233333  2899999988321           113 45999976632  389999


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      ++++.-
T Consensus       174 ISDMAP  179 (344)
T 3r24_A          174 ISDMYD  179 (344)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            988864

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=86.88  E-value=2.6  Score=35.93  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=44.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++. ++..++...+.+...+. ++.++.+|+.+..
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~   92 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLS   92 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGG
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHH
Confidence            356788888877664   4556666687 8999995 77776666666555553 7899999998853

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=86.86  E-value=0.91  Score=38.96  Aligned_cols=60  Identities=10%  Similarity=0.108  Sum_probs=44.9

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   69 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDE   69 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCH
Confidence            57788888877654   4556666787 89999999988877766665444 3688999999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=86.84  E-value=2  Score=36.24  Aligned_cols=61  Identities=11%  Similarity=0.231  Sum_probs=44.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++. ++...+...+..+..+. ++.++.+|+.+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   91 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGY-KAAVIKFDAASE   91 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCCCCH
Confidence            357788888877664   4555666687 8999998 56666666666665553 789999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=86.83  E-value=1.8  Score=36.26  Aligned_cols=60  Identities=17%  Similarity=0.160  Sum_probs=41.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   66 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCDSSQE   66 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS-SEEEEEECCTTSH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCCCCH
Confidence            46778888765543   3445555676 89999999887766655554444 2688999999873

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=86.76  E-value=1  Score=38.35  Aligned_cols=61  Identities=13%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~   87 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSE   87 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCH
Confidence            457888888876654   4556666687 899999999888777776665553 688999999874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=86.70  E-value=2  Score=35.22  Aligned_cols=59  Identities=15%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH-hcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~-~~~l~~i~~i~~D~~~~  225 (259)
                      +++||-.|++.|.   ++..|+++|. +|+.++.++..++...+... ..+ .++.++.+|+.+.
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   64 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKA   64 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCH
Confidence            4578888866553   4455555687 89999999887776665553 334 3789999999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=86.58  E-value=1.1  Score=38.36  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ .++.++.+|+.+..
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~   95 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAG   95 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHH
Confidence            457888888876654   4555666687 89999999877776666665554 36899999998853

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.57  E-value=2.8  Score=36.05  Aligned_cols=60  Identities=15%  Similarity=0.132  Sum_probs=44.3

Q ss_pred             CCCCEEEEEccCcC--h---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNG--L---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G--~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|  .   ++..|+++|. +|+.++.++...+.+++.....+  ++.++.+|+.+.
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~   93 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADA   93 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCH
Confidence            45789999997743  3   5667777787 89999999766666665554443  588999999884

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=86.49  E-value=1.4  Score=33.55  Aligned_cols=53  Identities=17%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             CCEEEEEccCc-Ch-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~-G~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+|+-+|||. |. ++..|.+.|. +|+++|.++..++.+++    .   .+.++.+|..+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~   61 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R---GVRAVLGNAANE   61 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEESCTTSH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c---CCCEEECCCCCH
Confidence            35788888863 33 2333444476 99999999988877664    2   456788888763

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=86.49  E-value=2.2  Score=37.18  Aligned_cols=61  Identities=16%  Similarity=0.218  Sum_probs=43.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S------------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+++|.+            +..++...+.....+. ++.++.+|+.+.
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~  119 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDL  119 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCH
Confidence            357788888877664   4566666787 89999986            6666665555555553 689999999874

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=86.47  E-value=0.53  Score=48.15  Aligned_cols=56  Identities=14%  Similarity=0.185  Sum_probs=44.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ...++||+.||.|.++..|.+.|+ .-|.++|+++.+++.-+.|.     ++..++.+|+.+
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~  595 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNI  595 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHH
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHH
Confidence            345899999999999999999887 56889999999988777764     245566666643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=86.45  E-value=2.6  Score=35.24  Aligned_cols=60  Identities=15%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+... + .++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~   69 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVATP   69 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence            46788888876553   3455556687 8999999987766555544332 4 2688999999874

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=86.09  E-value=1  Score=39.91  Aligned_cols=44  Identities=27%  Similarity=0.311  Sum_probs=36.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|+|. |.++..+++. |...|+++|.++.-++.+++.
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            4678999999875 7788888876 775699999999999998875

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=86.03  E-value=2.5  Score=35.27  Aligned_cols=60  Identities=10%  Similarity=0.222  Sum_probs=41.5

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~   75 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGKA   75 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence            46788887765543   3444555677 899999998777666555544443 688889998873

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=85.59  E-value=1.3  Score=38.90  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=36.3

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++
T Consensus       169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            35688999999875 7788888876 55699999999998888865

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=85.58  E-value=2.6  Score=35.74  Aligned_cols=61  Identities=18%  Similarity=0.134  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++. ++..++...+.....+. ++.++.+|+.+.
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~   90 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGG-EAFAVKADVSQE   90 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            357788888876654   4555666687 8999888 67777766666655553 688999999884

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=85.51  E-value=2.5  Score=34.81  Aligned_cols=59  Identities=15%  Similarity=0.106  Sum_probs=40.9

Q ss_pred             CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|+ +|.++..++    ++|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus        10 ~~~~vlVtGa-sggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   72 (255)
T 1fmc_A           10 DGKCAIITGA-GAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSE   72 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhC-CceEEEEcCCCCH
Confidence            4678887775 455555444    4576 89999999877766655554444 2688899999873

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=85.26  E-value=2.6  Score=35.91  Aligned_cols=62  Identities=11%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++. ++..++...+......-.++.++.+|+.+.
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~   88 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKP   88 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCH
Confidence            356789988877664   4556666687 8999998 666666665555443223689999999873

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.23  E-value=3  Score=34.95  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=43.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+..   + .++.++.+|+.+.
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~   66 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---G-PRVHALRSDIADL   66 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCH
Confidence            357889999877664   4556666687 8999999988776665543   2 3689999999884

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=85.22  E-value=2.7  Score=35.66  Aligned_cols=61  Identities=18%  Similarity=0.323  Sum_probs=42.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+..  ++.++.+|+.+.
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   70 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE   70 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCH
Confidence            46788888766553   4455556677 8999999988777666555443321  688999999874

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=85.17  E-value=3.2  Score=35.04  Aligned_cols=61  Identities=18%  Similarity=0.178  Sum_probs=41.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHh-HhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~-~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+ ...+. ++.++.+|+.+.
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~   83 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNY   83 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence            357788888876553   3455556687 8999999987766555444 33342 688889999873

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.12  E-value=2.4  Score=35.62  Aligned_cols=61  Identities=8%  Similarity=0.179  Sum_probs=43.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEE-eCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~gi-D~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.+ +.++...+...+.....+ .++.++.+|+.+.
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   70 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLG-RSALAIKADLTNA   70 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTT-SCCEEEECCTTCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence            357889999887664   4566666787 88887 667766666666555544 3688999999884

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=84.82  E-value=1.3  Score=39.59  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=36.2

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|+|. |.++..+++. |..+|+++|.++..++.+++.
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            5688999999875 7778888876 766899999999988888763

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=84.57  E-value=2.8  Score=35.88  Aligned_cols=61  Identities=20%  Similarity=0.283  Sum_probs=42.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHH-HHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~-~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.+.. ..+...+..+..+ .++.++.+|+.+.
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~  109 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEG-VKCVLLPGDLSDE  109 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTT-CCEEEEESCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC-CcEEEEECCCCCH
Confidence            357889999877664   4555666687 8999998764 4454555444444 3689999999884

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=84.55  E-value=2.8  Score=35.24  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEE-eCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~gi-D~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|+.+ +.++..++...+.+...+. ++.++.+|+.+.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   66 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGV-KVLVVKANVGQP   66 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCH
Confidence            36778888766554   4455566687 78876 8888877777666655553 689999999884

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=84.53  E-value=3.2  Score=34.37  Aligned_cols=60  Identities=18%  Similarity=0.162  Sum_probs=40.6

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++. ++..++...+.+...+ .++.++.+|+.+.
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   66 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLG-SDAIAVRADVANA   66 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence            36678877765443   3444555676 8999998 7776666555554444 2688899999874

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=84.47  E-value=3.8  Score=34.15  Aligned_cols=59  Identities=24%  Similarity=0.376  Sum_probs=40.9

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   63 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDR   63 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCH
Confidence            3578888765543   3445555677 89999999877766655554444 2688899999874

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=84.45  E-value=3.2  Score=34.62  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=41.0

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~   75 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLR   75 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eeEEEECCCCCH
Confidence            46788877765443   3344455576 899999998777666555544443 688899998873

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=84.38  E-value=2.8  Score=36.19  Aligned_cols=58  Identities=12%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|. +|+.+|.+++.++.+.+.+   + .++.++++|+.+.
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g-~~~~~~~~Dv~~~   87 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---G-GGAVGIQADSANL   87 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTCEEEECCTTCH
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeEEEEecCCCH
Confidence            468889999988776   5677777787 9999999998877665433   3 2678889999884

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=84.38  E-value=2.1  Score=36.49  Aligned_cols=60  Identities=17%  Similarity=0.155  Sum_probs=41.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+  ++.++.+|+.+.
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~   89 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG--DCQAIPADLSSE   89 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCH
Confidence            356788888876553   3445555676 89999999877766555444333  688888898873

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=84.35  E-value=0.94  Score=40.37  Aligned_cols=43  Identities=23%  Similarity=0.217  Sum_probs=34.9

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            5678999999874 7777778776 76689999999988887765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=84.33  E-value=4  Score=34.41  Aligned_cols=61  Identities=16%  Similarity=0.279  Sum_probs=42.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+. .++.++.+|+.+.
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~   95 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE   95 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCH
Confidence            46788888765443   3344455576 899999998877766665555543 2588899999874

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=84.12  E-value=3.4  Score=34.82  Aligned_cols=61  Identities=20%  Similarity=0.133  Sum_probs=43.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++. ++..++...+.++..+ .++.++.+|+.+.
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   80 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALG-SDAIAIKADIRQV   80 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CCEEEEECCTTSH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence            457889988877664   4556666787 8888776 5566666666555555 3689999999884

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=83.71  E-value=3.6  Score=35.16  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEe-CCHHHHHHHHHHhH-hcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVD-YSEDAINLAQSLAN-RDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD-~S~~~i~~a~~~~~-~~~l~~i~~i~~D~~~~~  226 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++ .++..++.+.+.+. ..+ .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcC-CeeEEEEeecCCcc
Confidence            46778877766553   3445556687 899999 99877776665554 334 36889999998865

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=83.68  E-value=4.4  Score=34.51  Aligned_cols=60  Identities=13%  Similarity=0.062  Sum_probs=41.8

Q ss_pred             CCCCEEEEEccCcChhHH----HHHhcCCCcEEEEeCCHHHHHHHHHHhHh-----cCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANR-----DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~S~~~i~~a~~~~~~-----~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++ |.++.    .|+++|. +|++++.++..++...+.+..     .+ .++.++.+|+.+.
T Consensus        16 l~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~D~~~~   84 (303)
T 1yxm_A           16 LQGQVAIVTGGA-TGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQ-ARVIPIQCNIRNE   84 (303)
T ss_dssp             TTTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCC-CCEEEEECCTTCH
T ss_pred             CCCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCC-ccEEEEecCCCCH
Confidence            346789988865 44444    4455576 899999998777666555543     22 3689999999874

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=83.60  E-value=1.5  Score=39.53  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=35.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            5688999999874 6677777776 766899999999988888763

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=83.55  E-value=3.1  Score=35.37  Aligned_cols=61  Identities=15%  Similarity=0.188  Sum_probs=41.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+... + .++.++.+|+.+.
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDP   88 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEeCCCCH
Confidence            356788888865443   3444555676 8999999987776555544332 3 3689999999874

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=83.55  E-value=3.5  Score=34.09  Aligned_cols=59  Identities=15%  Similarity=0.045  Sum_probs=40.9

Q ss_pred             CCCEEEEEccCcChhHH----HHHh-cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQ----ELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~----~la~-~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|+ +|.++.    .|++ .|. +|++++.++..++...+.+...+ .++.++.+|+.+.
T Consensus         3 ~~k~vlITGa-sggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~   66 (276)
T 1wma_A            3 GIHVALVTGG-NKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEG-LSPRFHQLDIDDL   66 (276)
T ss_dssp             CCCEEEESSC-SSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTT-CCCEEEECCTTCH
T ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcC-CeeEEEECCCCCH
Confidence            3567887765 455544    4455 576 89999999877766666555444 3688999999873

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.48  E-value=0.87  Score=40.75  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |.++..+++. |..+|+++|.++.-++.+++
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4678999999873 7778888876 77689999999988887765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=83.47  E-value=1.1  Score=40.00  Aligned_cols=43  Identities=21%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++..++.+++
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            5678999999874 7777778776 66589999999988888765

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.37  E-value=3.7  Score=35.30  Aligned_cols=61  Identities=23%  Similarity=0.298  Sum_probs=42.4

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+..  ++.++.+|+.+.
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~   90 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA   90 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCH
Confidence            46778877765553   3445555677 8999999988777666555444421  688999999874

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=83.37  E-value=2.7  Score=35.73  Aligned_cols=59  Identities=12%  Similarity=0.075  Sum_probs=40.5

Q ss_pred             CCCEEEEEccCcChhHHHHH----hcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la----~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++ |.++..++    ++|. +|++++.++..++...+.+...+. ++.++.+|+.+.
T Consensus        43 ~~k~vlITGas-ggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~d~  105 (285)
T 2c07_A           43 ENKVALVTGAG-RGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKK  105 (285)
T ss_dssp             SSCEEEEESTT-SHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCC-ceeEEECCCCCH
Confidence            46788888765 45544444    4465 899999888777666555544442 688999999873

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=83.35  E-value=3.7  Score=34.18  Aligned_cols=59  Identities=17%  Similarity=0.054  Sum_probs=40.4

Q ss_pred             CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++ |.++..    |+++|. +|++++. ++..++...+.+...+. ++.++.+|+.+.
T Consensus        20 ~~k~vlItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~   83 (274)
T 1ja9_A           20 AGKVALTTGAG-RGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKP   83 (274)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCC-cEEEEEecCCCH
Confidence            46788877754 554444    445576 8999998 77766665555554442 688999999874

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=83.33  E-value=1.6  Score=38.51  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=34.2

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |. +|+++|.++..++.+++
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            4688999999874 7777777775 66 69999999988888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.29  E-value=3.1  Score=35.72  Aligned_cols=60  Identities=20%  Similarity=0.178  Sum_probs=43.5

Q ss_pred             CCCCEEEEEccCc--Ch---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGN--GL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~--G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.  |.   ++..|+++|. +|+.++.++...+.+++.....+  .+.++.+|+.+.
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~   92 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDA   92 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCH
Confidence            3578999999854  43   5666777787 89999999766666655554443  468899999884

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=83.08  E-value=3.1  Score=35.13  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+.+   + .++.++.+|+.+.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~   88 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---G-NRAEFVSTNVTSE   88 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---C-CceEEEEcCCCCH
Confidence            46788888877664   4555666687 8999999988776665544   3 2689999999884

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=83.03  E-value=1.2  Score=39.57  Aligned_cols=43  Identities=28%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++..++.+++
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~  233 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE  233 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            5678999999874 6777777775 76589999999988888875

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=82.94  E-value=3.6  Score=34.61  Aligned_cols=62  Identities=15%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.+...+ -..+.++.+|+.+.
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~   73 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTE   73 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCH
Confidence            357788888876554   4555666687 89999999888776666554432 23578889998873

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=82.91  E-value=3.8  Score=34.89  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=43.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+++|.++..++...+..   + .++.++.+|+.+.
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~d~   87 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---G-CGAAACRVDVSDE   87 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---C-SSCEEEECCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---C-CcceEEEecCCCH
Confidence            357789988887764   4566677787 9999999987766655443   3 2688999999884

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=82.71  E-value=3.3  Score=34.80  Aligned_cols=60  Identities=17%  Similarity=0.124  Sum_probs=40.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++. ++..++...+.+... + .++.++.+|+.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~   74 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARA-GSAVLCKGDLSLS   74 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcC-CceEEEeccCCCc
Confidence            46678877765543   3444555676 8999999 887776665555433 3 3688999999876

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=82.68  E-value=3  Score=37.04  Aligned_cols=60  Identities=17%  Similarity=0.316  Sum_probs=45.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC---------------------CcceEEEEec
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---------------------FSCIKFLVMN  221 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~---------------------l~~i~~i~~D  221 (259)
                      +...|+.+|||.......+... +...++-||. +.+++.-++.+...+                     -.+.+++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4578999999999999999875 3336777887 778877777765541                     1368899999


Q ss_pred             ccC
Q 025035          222 ISV  224 (259)
Q Consensus       222 ~~~  224 (259)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            887

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=82.62  E-value=3  Score=34.77  Aligned_cols=60  Identities=12%  Similarity=0.114  Sum_probs=42.4

Q ss_pred             CCCCEEEEEccC--cCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTG--NGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG--~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++  .|.   ++..|+++|. +|+.++.+....+.+++..+..+  ++.++.+|+.+.
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~   76 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFG--SELVFPCDVADD   76 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCCEEECCTTCH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcC--CcEEEECCCCCH
Confidence            468899999975  443   3455566687 89999988665555555554443  578899999884

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.61  E-value=1.2  Score=39.63  Aligned_cols=43  Identities=26%  Similarity=0.329  Sum_probs=34.6

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |..+|+++|.++..++.+++
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            5678999999875 7777777775 66589999999988887764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=82.57  E-value=1.2  Score=39.65  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=34.5

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |.++..+++. |..+|+++|.++.-++.+++
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            4678999999874 7777777776 66589999999988887764

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=82.45  E-value=4.9  Score=33.50  Aligned_cols=61  Identities=15%  Similarity=0.094  Sum_probs=41.3

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+... +-.++.++.+|+.+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   70 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREP   70 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCH
Confidence            46788888876553   3445555677 8999999987776655544322 112688899999873

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=82.33  E-value=1.9  Score=38.31  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=34.8

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|+|. |..+..+++. |. +|++++.++.-++.+++
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  231 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFA  231 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHH
Confidence            5688999999875 7777777776 66 99999999988888766

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=82.05  E-value=4.4  Score=33.85  Aligned_cols=58  Identities=19%  Similarity=0.263  Sum_probs=41.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.+|.++..++...+..   + .++.++.+|+.+.
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~   66 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEI---G-PAAYAVQMDVTRQ   66 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CCceEEEeeCCCH
Confidence            357789988876553   4555666687 8999999987766555433   2 2588999999874

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=81.90  E-value=3.2  Score=35.65  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=42.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC--HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S--~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.+  +...+...+..+..+. ++.++.+|+.+.
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~  112 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGR-KAVLLPGDLSDE  112 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTC-CEEECCCCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCC-cEEEEEecCCCH
Confidence            357889999876654   4555666687 89999986  3455555555555553 688999999874

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=81.87  E-value=1.4  Score=39.48  Aligned_cols=43  Identities=21%  Similarity=0.184  Sum_probs=35.1

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|+|. |..+..+++. |. +|++++.|+..++.+++
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            35688999999985 7777788875 66 79999999988888875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=81.86  E-value=4.5  Score=35.38  Aligned_cols=61  Identities=16%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEe-CCHHHHHHHHHHhH-hcCCcceEEEEecccCCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVD-YSEDAINLAQSLAN-RDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD-~S~~~i~~a~~~~~-~~~l~~i~~i~~D~~~~~  226 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++ .++..++.+.+.+. ..+ .++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRP-NSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcC-CeEEEEEeeCCCch
Confidence            46778877766554   3445555687 899999 99877776665554 334 36899999998865

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=81.81  E-value=2.6  Score=35.81  Aligned_cols=55  Identities=13%  Similarity=0.210  Sum_probs=40.7

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++||--|++.|.   ++..|++.|. +|+.+|.++..++...+    .+ .++.++++|+.+.
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~----~~-~~~~~~~~Dv~~~   59 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAK----ER-PNLFYFHGDVADP   59 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHT----TC-TTEEEEECCTTSH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH----hc-CCEEEEEecCCCH
Confidence            3678888888775   5677777787 99999999876554332    22 3688899999884

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=81.75  E-value=4.1  Score=34.53  Aligned_cols=60  Identities=13%  Similarity=0.298  Sum_probs=41.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.++.++...+.+++ ....+ .++.++.+|+.+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~-~~~~~-~~~~~~~~Dv~d~   91 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADE-IADGG-GSAEAVVADLADL   91 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHH-HHTTT-CEEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHH-HHhcC-CcEEEEEecCCCH
Confidence            457889999877664   4566666787 89999966544444333 33333 3689999999884

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=81.65  E-value=4.6  Score=33.54  Aligned_cols=57  Identities=19%  Similarity=0.264  Sum_probs=42.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|+.++.++..++...+..   + .++.++.+|+.+.
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~   67 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---G-DAALAVAADISKE   67 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---C-CceEEEEecCCCH
Confidence            57789999887664   4666666787 8999999988776665533   2 2688999999884

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=81.65  E-value=4.3  Score=33.17  Aligned_cols=59  Identities=14%  Similarity=0.023  Sum_probs=39.8

Q ss_pred             CCCEEEEEccCcChhHHH----HHhcCCCcEEEEeCCHHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~----la~~g~~~V~giD~S~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++ |.++..    |+++|. +|++++.++..++...+.+.. .+ .++.++.+|+.+.
T Consensus         6 ~~~~vlVtGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   69 (248)
T 2pnf_A            6 QGKVSLVTGST-RGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYG-VKAHGVEMNLLSE   69 (248)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHC-CCEEEEECCTTCH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcC-CceEEEEccCCCH
Confidence            46778877765 444444    445576 899999998777665554433 23 2688899998873

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=81.46  E-value=4.2  Score=33.64  Aligned_cols=59  Identities=14%  Similarity=0.044  Sum_probs=39.8

Q ss_pred             CCCEEEEEccCcChhHH----HHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~----~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++ |.++.    .|+++|. +|++++. ++..++...+.+...+ .++.++.+|+.+.
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~   69 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVG-GEAIAVKGDVTVE   69 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTT-CEEEEEECCTTSH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcC-CceEEEECCCCCH
Confidence            46788877755 44444    4455576 8999998 7766665555554444 2688999999873

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=81.41  E-value=5  Score=33.08  Aligned_cols=56  Identities=16%  Similarity=0.264  Sum_probs=41.1

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++||-.|++.|.   ++..|+++|. +|+.++.++..++...+...    .++.++.+|+.+.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~   61 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLG----NAVIGIVADLAHH   61 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG----GGEEEEECCTTSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc----CCceEEECCCCCH
Confidence            4678888877654   4555666687 89999999987776665542    1588999999873

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=81.40  E-value=4  Score=33.62  Aligned_cols=58  Identities=17%  Similarity=0.206  Sum_probs=41.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++||-.|++.|.   ++..|+++|. +|+.++.++..++...+...    .++.++.+|+.+.
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~D~~~~   72 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK----DNYTIEVCNLANK   72 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC----SSEEEEECCTTSH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc----cCccEEEcCCCCH
Confidence            457889988876654   4455666686 89999999887766655432    2688888998773

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=81.37  E-value=3.7  Score=34.22  Aligned_cols=59  Identities=17%  Similarity=0.315  Sum_probs=39.6

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHH--HHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA--INLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~--i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++|-.|++.|.   ++..|+++|. +|++++.++..  ++...+.+...+ .++.++.+|+.+.
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~   65 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAAD-QKAVFVGLDVTDK   65 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTT-CCEEEEECCTTCH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence            4578888866553   3445555687 89999998765  555544444333 3688999999874

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=81.34  E-value=3.5  Score=34.19  Aligned_cols=61  Identities=20%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC------cceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l------~~i~~i~~D~~~~  225 (259)
                      .+++||-.|++.|.   ++..|+++|. +|++++.++..++...+.+...+.      .++.++.+|+.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   75 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEA   75 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCH
Confidence            46788888766543   3444555676 899999998776655443332220      2588899999874

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=81.18  E-value=2.5  Score=36.09  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=41.8

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHH-------HHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSED-------AINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~-------~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++|-.|++.|.   ++..|+++|. +|++++.++.       .++...+.....+. ++.++.+|+.+.
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~   77 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGG-QALPIVGDIRDG   77 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTS-EEEEEECCTTSH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            57789988887664   4556666677 8999998865       34444444444443 789999999884

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=81.17  E-value=5.1  Score=33.15  Aligned_cols=59  Identities=15%  Similarity=0.204  Sum_probs=40.3

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeC-CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~-S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++|-.|++.|.   ++..|+++|. +|+.++. ++..++...+.+...+. ++.++.+|+.+.
T Consensus         4 ~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~   66 (246)
T 3osu_A            4 TKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGV-DSFAIQANVADA   66 (246)
T ss_dssp             SCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTS-CEEEEECCTTCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            5678877766553   3455566677 8988887 55666666665555553 688999999874

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=81.11  E-value=4.5  Score=34.37  Aligned_cols=57  Identities=18%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++..++...+.   .+ .++.++.+|+.+.
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~~~   63 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVA---HG-GNAVGVVGDVRSL   63 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---TB-TTEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHH---cC-CcEEEEEcCCCCH
Confidence            47789988877664   4566666787 999999998776655443   23 3688999999874

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=81.10  E-value=2.5  Score=36.82  Aligned_cols=61  Identities=15%  Similarity=0.074  Sum_probs=42.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC----------HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS----------EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S----------~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..+++||-.|++.|.   ++..|+++|. +|+.+|.+          ...++...+.+...+. ++.++.+|+.+.
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~   98 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGG-EAVADGSNVADW   98 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTC-EEEEECCCTTSH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            357788888877654   4556666787 99999987          5555555555555543 688899999874

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=81.04  E-value=2.7  Score=35.88  Aligned_cols=60  Identities=13%  Similarity=0.133  Sum_probs=44.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|. +|+.++.++...+.+.+..+ .+ .++.++.+|+.+.
T Consensus         5 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~-~~-~~~~~~~~Dv~~~   67 (258)
T 4gkb_A            5 LQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQ-RQ-PRATYLPVELQDD   67 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHH-HC-TTCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHh-cC-CCEEEEEeecCCH
Confidence            468899999988887   5677788887 89999987655554444333 33 2688999999884

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.85  E-value=4.5  Score=34.41  Aligned_cols=60  Identities=17%  Similarity=0.263  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ++++.+|--|.+.|.   ++..|++.|. +|+.+|.+..  +.+.+.++..+. ++.++++|+.+..
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~-~~~~~~~Dv~d~~   69 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG-NASALLIDFADPL   69 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTSTT
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC-cEEEEEccCCCHH
Confidence            468888888888776   5677777887 8999998742  233334444553 7889999998843

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=80.72  E-value=3.8  Score=33.64  Aligned_cols=59  Identities=14%  Similarity=0.128  Sum_probs=39.2

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|++++.++..++...+.....  .++.++.+|+.+.
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~   66 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDE   66 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc--CceEEEECCCCCH
Confidence            46778877765443   3344455576 8999999987666554443221  3689999999873

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=80.66  E-value=4.7  Score=33.48  Aligned_cols=58  Identities=19%  Similarity=0.261  Sum_probs=41.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++++|-.|++.|.   ++..|+++|. +|++++.++..++...+...    .++.++..|+.+.
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~d~   67 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLG----DNGKGMALNVTNP   67 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc----ccceEEEEeCCCH
Confidence            357788888877654   4556666687 89999999887766655443    2477888999874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=80.28  E-value=6.5  Score=33.20  Aligned_cols=61  Identities=11%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC-HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S-~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..++++|-.|++.|.   ++..|+++|. +|+.++.. ...++...+.++..+. ++.++.+|+.+.
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~   93 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGG-RAVAIRADNRDA   93 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            457889999887664   4566666787 88888654 4555555555555553 688999999884

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=80.08  E-value=4.1  Score=34.64  Aligned_cols=59  Identities=8%  Similarity=0.079  Sum_probs=40.7

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCH-HHHHHHHHHhH-hcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE-DAINLAQSLAN-RDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~-~~i~~a~~~~~-~~~l~~i~~i~~D~~~  224 (259)
                      .++++|-.|++.|.   ++..|+++|. +|+.++.++ ..++...+.+. ..+ .++.++.+|+.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~   85 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERS-NTAVVCQADLTN   85 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHST-TCEEEEECCCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcC-CceEEEEeecCC
Confidence            46788888776553   3455556687 899999987 66655554443 334 368899999988

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=80.02  E-value=3.8  Score=33.60  Aligned_cols=60  Identities=10%  Similarity=0.138  Sum_probs=38.5

Q ss_pred             CCCEEEEEccCcCh---hHHHHHhcCCCcEEEE-eCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~~g~~~V~gi-D~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.|++.|.   ++..|+++|. +|+++ +.++..++...+.+...+ .++.++.+|+.+.
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~   67 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAG-INVVVAKGDVKNP   67 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTT-CCEEEEESCTTSH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcC-CcEEEEECCCCCH
Confidence            46788888765443   3444555576 89998 556555555544444444 3688999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-06
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-04
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	6e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.001
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.001
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	0.001
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	0.002
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.002
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.003

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 46.1 bits (108), Expect = 1e-06
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   +    
Sbjct: 27  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDS--- 83

Query: 226 ILTYFICKSERNEHYTFDLYQIGYYMSNECFLLK 259
                     +        +   Y  S    L  
Sbjct: 84  --YGRHMDLGKEFDVISSQFSFHYAFSTSESLDI 115

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 27/120 (22%), Positives = 38/120 (31%), Gaps = 8/120 (6%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S GH   H E LK +         + +N        VLD+G G G+L    +K G   + 
Sbjct: 3   SYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 62

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYM 251
           GVD SE        +        I  +   I    L         +E   + L       
Sbjct: 63  GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLD 122

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
            +    ++L++G+  G     L +    D+T V+ SE+AI+
Sbjct: 17  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAIS 56

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (90), Expect = 3e-04
 Identities = 24/128 (18%), Positives = 38/128 (29%), Gaps = 11/128 (8%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S  H   H E L+           + +N        VLD+G G G+L    +K G   + 
Sbjct: 6   SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYM 251
           GVD S       + +        I  L   +      +            +  Y + Y  
Sbjct: 66  GVDMSSIIEMAKELVELNGFSDKITLLRGKLEDV---HLPFPKVDIIISEWMGYFLLYES 122

Query: 252 SNECFLLK 259
             +  L  
Sbjct: 123 MMDTVLYA 130

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.7 bits (86), Expect = 6e-04
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 1/92 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227
           VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  +      
Sbjct: 19  VLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF 77

Query: 228 TYFICKSERNEHYTFDLYQIGYYMSNECFLLK 259
           T                     ++S    +LK
Sbjct: 78  TDERFHIVTCRIAAHHFPNPASFVSEAYRVLK 109

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 15/96 (15%), Positives = 32/96 (33%)

Query: 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
           +  N        VLD+G+G G+L    +K G   + G++ S  +    + +        +
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 216 KFLVMNISVQILTYFICKSERNEHYTFDLYQIGYYM 251
             +   +    L         +E   + L+      
Sbjct: 85  TIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLN 120

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 1/92 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL 227
           VLDIG G G      S     +  GVD +++ + +A S A   G   ++F          
Sbjct: 20  VLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 78

Query: 228 TYFICKSERNEHYTFDLYQIGYYMSNECFLLK 259
                      +       +   +     +LK
Sbjct: 79  PDDSFDIITCRYAAHHFSDVRKAVREVARVLK 110

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F  
Sbjct: 47  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 98

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.002
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
           +++DIG+G  +     +   F D+T  D+++      +    ++  +
Sbjct: 54  TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA 100

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 1/83 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI 226
            VL    G    +  LS QG+  + G + SE A+    +          +      +   
Sbjct: 23  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 81

Query: 227 LTYFICKSERNEHYTFDLYQIGY 249
           +  +                  Y
Sbjct: 82  IEIWCGDFFALTARDIGHCAAFY 104

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211
           ++DIG+G  +     +   F D+T  D+ E            + 
Sbjct: 58  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.55
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.54
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.54
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.53
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.47
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.45
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.44
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.44
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.43
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.43
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.42
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.36
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.35
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.35
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.32
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.32
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.31
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.3
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.26
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.25
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.25
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.24
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.24
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.22
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.22
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.21
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.2
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.17
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.14
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.13
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.13
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.1
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.09
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.07
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.07
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.02
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.01
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.99
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.98
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.96
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.96
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.95
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.94
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.94
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.93
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.9
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.88
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.87
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.86
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.85
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.85
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.84
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.84
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.84
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.83
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.82
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.81
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.8
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.77
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.73
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.69
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.64
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.64
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.6
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.58
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.56
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.44
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.36
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.35
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.16
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.14
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.1
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.06
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.04
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.74
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.71
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.7
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.7
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.68
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.49
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.44
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.34
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.3
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	97.24
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.24
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.17
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.17
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.16
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.11
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.08
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.04
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.88
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.77
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.73
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.61
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.49
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.33
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.08
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	95.58
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.87
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	94.85
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.48
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.46
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.46
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.28
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.24
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.95
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.78
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.66
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.64
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.44
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.3
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.25
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.24
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.11
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.08
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.05
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.87
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.85
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.76
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.5
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.5
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	92.16
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.09
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.07
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.04
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.01
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.87
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	91.81
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.47
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.46
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	91.25
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.15
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	91.1
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.99
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.46
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.15
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.98
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.92
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.87
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.74
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.62
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	89.53
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.49
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.41
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	88.94
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	88.91
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.78
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.66
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	88.5
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	88.25
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	88.24
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.23
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.19
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	87.53
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	87.41
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	87.37
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.35
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	87.13
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	86.09
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	85.92
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	85.88
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	85.76
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.27
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	85.2
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	85.18
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	84.53
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	84.35
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	84.31
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	83.52
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	83.46
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	83.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.01
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	81.88
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.42
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.37
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	80.22
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.08

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.4e-15  Score=124.80  Aligned_cols=115  Identities=12%  Similarity=0.059  Sum_probs=83.6

Q ss_pred             CCchhhHHHHHHHHHhhhhccCCCcceecCcchHHHHHHHHHhhhhhhhccccccchhccccchHHhhccCCCCCEEEEE
Q 025035           92 LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI  171 (259)
Q Consensus        92 l~~~~yWd~~Y~~~~~~f~~~g~~ge~WF~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~VLDi  171 (259)
                      .-..++|+++|.+....          |..+.....+..|+.++.                        ...++.+|||+
T Consensus         7 ~~~~e~W~~~~~~~~~~----------w~~~~~~~~l~~~~~~~l------------------------~~~~~~rvLd~   52 (229)
T d2bzga1           7 VLTLEEWQDKWVNGKTA----------FHQEQGHQLLKKHLDTFL------------------------KGKSGLRVFFP   52 (229)
T ss_dssp             CCCHHHHHHHHHHTCCT----------TCCTTCCHHHHHHHHHHH------------------------TTCCSCEEEET
T ss_pred             cCCHHHHHHHHccCCCC----------CccCCCCHHHHHHHHHhc------------------------CCCCCCEEEEe
Confidence            34578999999653222          444444444455554432                        11357899999


Q ss_pred             ccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC-----------------CcceEEEEecccCCCc----cee
Q 025035          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----------------FSCIKFLVMNISVQIL----TYF  230 (259)
Q Consensus       172 GcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~-----------------l~~i~~i~~D~~~~~~----~fd  230 (259)
                      |||+|..+..|+++|+ +|+|||+|+.||+.|+++....+                 ..+++++++|+.+++.    .||
T Consensus        53 GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd  131 (229)
T d2bzga1          53 LCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFD  131 (229)
T ss_dssp             TCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEE
T ss_pred             CCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhccccccCcee
Confidence            9999999999999998 99999999999999998765321                 1268999999988543    789


Q ss_pred             EEEecccCccc
Q 025035          231 ICKSERNEHYT  241 (259)
Q Consensus       231 vv~~~v~~h~~  241 (259)
                      +|+.....|..
T Consensus       132 ~i~~~~~l~~~  142 (229)
T d2bzga1         132 MIWDRGALVAI  142 (229)
T ss_dssp             EEEESSSTTTS
T ss_pred             EEEEEEEEEec
Confidence            88777666544

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.54  E-value=1.3e-14  Score=121.38  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=67.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++++. +|+|+|+|+.|++.|++++...+.++++|+++|+.++++   .||+|++..+.|
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l~   92 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH   92 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccccccccccccccccccc
Confidence            5678999999999999999999976 999999999999999999998888889999999999765   799766555544


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      +.
T Consensus        93 ~~   94 (231)
T d1vl5a_          93 HF   94 (231)
T ss_dssp             GC
T ss_pred             cc
Confidence            43

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.54  E-value=1.4e-14  Score=122.17  Aligned_cols=81  Identities=23%  Similarity=0.303  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccC
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      +.++.+|||||||+|.++..+++++. +|+|+|+|+.|++.|++++...++.++.|+++|+.+.++   +||+|++....
T Consensus        14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   92 (234)
T d1xxla_          14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAA   92 (234)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeecee
Confidence            35789999999999999999999975 999999999999999999998888889999999999765   79977766555


Q ss_pred             ccccc
Q 025035          239 HYTFD  243 (259)
Q Consensus       239 h~~~D  243 (259)
                      |+..|
T Consensus        93 ~~~~d   97 (234)
T d1xxla_          93 HHFSD   97 (234)
T ss_dssp             GGCSC
T ss_pred             ecccC
Confidence            54433

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=5.1e-14  Score=119.12  Aligned_cols=69  Identities=23%  Similarity=0.433  Sum_probs=61.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      ++++|||||||+|..+..|+++|. +|+|||+|+.||+.|++++...++ +++++++|+.++++  .||+|.+
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~  111 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTM  111 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEE
T ss_pred             CCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccccccchHhh
Confidence            467999999999999999999987 899999999999999999988776 79999999999765  7886554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.47  E-value=5.9e-14  Score=115.55  Aligned_cols=76  Identities=18%  Similarity=0.295  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~~h~  240 (259)
                      ++++|||||||+|..+..|+++|. +|+|+|+|+.|++.++++++..++.++++.+.|+.+...  .||+|.+..+.|+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF  107 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence            467999999999999999999987 999999999999999999999998889999999987544  8997665554444

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.45  E-value=4.2e-14  Score=114.48  Aligned_cols=78  Identities=15%  Similarity=0.061  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC------------cceEEEEecccCCCc---
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------------SCIKFLVMNISVQIL---  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l------------~~i~~i~~D~~~~~~---  227 (259)
                      .++.+|||+|||+|..+..|+++|+ +|+|+|+|+.||+.|+++++..+.            ..++|+++|+.+++.   
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            4688999999999999999999998 999999999999999998865432            246899999988764   


Q ss_pred             -ceeEEEecccCccc
Q 025035          228 -TYFICKSERNEHYT  241 (259)
Q Consensus       228 -~fdvv~~~v~~h~~  241 (259)
                       .||++++..+.|..
T Consensus        98 ~~~D~i~~~~~l~~l  112 (201)
T d1pjza_          98 GHCAAFYDRAAMIAL  112 (201)
T ss_dssp             HSEEEEEEESCGGGS
T ss_pred             cceeEEEEEeeeEec
Confidence             68877765555543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=2.4e-13  Score=112.58  Aligned_cols=76  Identities=28%  Similarity=0.315  Sum_probs=63.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-ccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~~  238 (259)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. ++.++++|+.++++   +||+|++. ++.
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-cccccccccccccccCcCceEEEEecchh
Confidence            3568999999999999999999876 899999999999999999887764 68999999999765   79965444 444


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       114 ~~  115 (226)
T d1ve3a1         114 HF  115 (226)
T ss_dssp             GC
T ss_pred             hC
Confidence            44

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.44  E-value=2e-13  Score=115.74  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      .++++|||||||+|.++..|+++|. +|+|+|+|+.||+.|++++...++ +++|+++|+.+++.  .||+|.+
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhcccccccccce
Confidence            3468999999999999999999987 999999999999999999988776 79999999998654  7886654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.43  E-value=4.4e-13  Score=114.34  Aligned_cols=79  Identities=28%  Similarity=0.321  Sum_probs=67.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc----ceeEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL----TYFICKSERNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~----~fdvv~~~v~~  238 (259)
                      ++.+|||||||+|..+..+++.|..+|+|||+|+.||+.|++++...+.. ++.|+++|+...++    .||+|++....
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l  103 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF  103 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence            57899999999999999999988778999999999999999998776654 69999999976433    69988877776


Q ss_pred             cccc
Q 025035          239 HYTF  242 (259)
Q Consensus       239 h~~~  242 (259)
                      |+.+
T Consensus       104 ~~~~  107 (252)
T d1ri5a_         104 HYAF  107 (252)
T ss_dssp             GGGG
T ss_pred             eecC
Confidence            6543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=115.08  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+++.+..+|+|||+|+.||+.|++++...+..+++|+++|+.++++   .||+|++..+.|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            35679999999999999998877666899999999999999999988877789999999998654   788665555544


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      +.
T Consensus       139 h~  140 (222)
T d2ex4a1         139 HL  140 (222)
T ss_dssp             GS
T ss_pred             cc
Confidence            43

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.8e-13  Score=114.06  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEecccC
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSERNE  238 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~v~~  238 (259)
                      +.++.+|||||||+|.++..++++...+|+|||+|+.|++.|++++...|+.+ ++|+++|+.++..  +||+|.+....
T Consensus        31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  110 (245)
T d1nkva_          31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGAT  110 (245)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEehh
Confidence            35689999999999999999998733499999999999999999999998864 9999999998643  89976655444


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |+.
T Consensus       111 ~~~  113 (245)
T d1nkva_         111 WIA  113 (245)
T ss_dssp             GGT
T ss_pred             hcc
Confidence            433

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.36  E-value=1.2e-12  Score=113.32  Aligned_cols=78  Identities=17%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~  237 (259)
                      .++.+|||||||+|.++..|+++ |. +|+|+|+|+.|++.|+++....|+. +++|+++|+.++++   +||+|++..+
T Consensus        66 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1          66 QRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccch
Confidence            46889999999999999999987 55 8999999999999999999988885 69999999999765   7997655444


Q ss_pred             -Cccc
Q 025035          238 -EHYT  241 (259)
Q Consensus       238 -~h~~  241 (259)
                       .|.+
T Consensus       145 l~h~~  149 (282)
T d2o57a1         145 FLHSP  149 (282)
T ss_dssp             GGGCS
T ss_pred             hhhcc
Confidence             4543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.35  E-value=1.5e-12  Score=109.00  Aligned_cols=79  Identities=11%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc-ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL-TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~-~fdvv~~~v~  237 (259)
                      .++.+|||||||+|..+..+++.   +..+|+|+|+|+.|++.|+++++..+.. ++++.++|+.+.+. .+|++.+...
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~  117 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  117 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence            46789999999999999999975   3349999999999999999998776643 58899999988665 6676555555


Q ss_pred             Cccc
Q 025035          238 EHYT  241 (259)
Q Consensus       238 ~h~~  241 (259)
                      .|+.
T Consensus       118 l~~~  121 (225)
T d1im8a_         118 LQFL  121 (225)
T ss_dssp             GGGS
T ss_pred             cccc
Confidence            5443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=2.4e-12  Score=107.72  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEe-c-ccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKS-E-RNE  238 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~-~-v~~  238 (259)
                      ++.+|||+|||+|.++..|++.|. +|+|+|+|+.|++.|+++..      ..++++|+.++++   .||+|++ . +++
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~------~~~~~~~~~~l~~~~~~fD~ii~~~~~~~  114 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV------KNVVEAKAEDLPFPSGAFEAVLALGDVLS  114 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC------SCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc------cccccccccccccccccccceeeecchhh
Confidence            468999999999999999999976 89999999999999998532      2367889988765   7996654 3 444


Q ss_pred             cc
Q 025035          239 HY  240 (259)
Q Consensus       239 h~  240 (259)
                      |.
T Consensus       115 ~~  116 (246)
T d2avna1         115 YV  116 (246)
T ss_dssp             HC
T ss_pred             hh
Confidence            44

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.32  E-value=1.4e-12  Score=106.60  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=64.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCC---cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQI---LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~---~~fdvv~~~v~~  238 (259)
                      .++.+|||||||+|.+++.+++.+. +|+|+|+++.+++.|+++++++|+. +++++++|+.+..   ..||.++.....
T Consensus        32 ~~g~~VLDiGcGsG~~s~~lA~~~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          32 GKNDVAVDVGCGTGGVTLELAGRVR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHTTSS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCEEEEEECCeEcccccccccce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence            5789999999999999999998754 9999999999999999999999985 7999999988743   377866655433

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.32  E-value=2e-12  Score=108.37  Aligned_cols=75  Identities=24%  Similarity=0.214  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe-cccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS-ERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~-~v~~h  239 (259)
                      .++++|||||||+|.++..++++|. +|+|||+|+.+++.|+++..    .++.++++++.+.++  .||+|.+ .+++|
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~~~vleh   93 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVLTHVLEH   93 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEEESCGGG
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccccceeEe
Confidence            4578999999999999999999886 89999999999999998653    268999999988554  8885544 44455


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus        94 ~~d   96 (225)
T d2p7ia1          94 IDD   96 (225)
T ss_dssp             CSS
T ss_pred             cCC
Confidence            443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=7.9e-13  Score=113.75  Aligned_cols=76  Identities=25%  Similarity=0.306  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC--cceeEEEecccCc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI--LTYFICKSERNEH  239 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~--~~fdvv~~~v~~h  239 (259)
                      ..++.+|||+|||+|.+++.+++.|. +|+|+|+|+.|++.|++|++.+++ +++++++|+.+..  .+||+|..++..|
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~  195 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhccccc
Confidence            35789999999999999999999886 899999999999999999999988 6789999987632  3799887766544

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.30  E-value=4e-12  Score=110.31  Aligned_cols=81  Identities=22%  Similarity=0.129  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEeccc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      ..++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+. +++|+++|+.++++  .||+|++..+
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~~fD~v~~~~~  103 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHAF  103 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEESC
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccCCceEEEEehh
Confidence            356789999999999999999986 2 24899999999999999999988776 79999999998654  7997666555


Q ss_pred             Cccccc
Q 025035          238 EHYTFD  243 (259)
Q Consensus       238 ~h~~~D  243 (259)
                      .|+..|
T Consensus       104 l~~~~d  109 (281)
T d2gh1a1         104 LLHMTT  109 (281)
T ss_dssp             GGGCSS
T ss_pred             hhcCCC
Confidence            544433

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.26  E-value=6.1e-12  Score=104.15  Aligned_cols=69  Identities=29%  Similarity=0.347  Sum_probs=62.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSER  236 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v  236 (259)
                      ..|++|||+|||+|.+++.++..|..+|+|+|+++.+++.|++|+.     ++.|+++|+.+++..||+|+++.
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~~~fD~Vi~NP  115 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEISGKYDTWIMNP  115 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCCCCEEEEEECC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcCCcceEEEeCc
Confidence            4689999999999999999999988799999999999999999763     68999999999999999887764

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=1.4e-11  Score=101.05  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=67.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC--cceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI--LTYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~--~~fdvv~~~v~~  238 (259)
                      .++.+|||+|||+|.+++.+++.+. +|+++|+|+.+++.|+++++.+++.  +++++.+|+.+..  ..||+|+++...
T Consensus        51 ~~~~~VLDiGcG~G~~~~~la~~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~Ii~~~p~  129 (194)
T d1dusa_          51 DKDDDILDLGCGYGVIGIALADEVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNKIITNPPI  129 (194)
T ss_dssp             CTTCEEEEETCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEEEEECCCS
T ss_pred             CCCCeEEEEeecCChhHHHHHhhcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceEEEEcccE
Confidence            4678999999999999999998765 9999999999999999999988875  4899999998732  389988887766


Q ss_pred             ccccc
Q 025035          239 HYTFD  243 (259)
Q Consensus       239 h~~~D  243 (259)
                      |...+
T Consensus       130 ~~~~~  134 (194)
T d1dusa_         130 RAGKE  134 (194)
T ss_dssp             TTCHH
T ss_pred             Eecch
Confidence            65443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=1.1e-11  Score=102.81  Aligned_cols=74  Identities=16%  Similarity=0.123  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.+++.++.+|..+|+|+|+++.+++.+++|++..+. +..++++|+.+....||+|+++--
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~~~fD~Vi~nPP  118 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFNSRVDIVIMNPP  118 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCCCCCSEEEECCC
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhCCcCcEEEEcCc
Confidence            46889999999999999999998877999999999999999999998886 789999999998889998776543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.24  E-value=8.7e-12  Score=108.21  Aligned_cols=75  Identities=24%  Similarity=0.306  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      ..+.+|||+|||+|.+++.++.. +..+|+++|+|+.+++.|++|++++++.+++|+++|+.+...  .||++.++--
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP  184 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPP  184 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecch
Confidence            34678999999999999999886 455999999999999999999999999789999999988532  7998777643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=1.3e-11  Score=107.25  Aligned_cols=79  Identities=16%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCccee-EEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYF-ICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fd-vv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..++++ |. +|+|||+|+.+++.|+++++..++. .+.+...|..+.+..|| +++..+++|
T Consensus        51 ~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD~i~si~~~eh  129 (280)
T d2fk8a1          51 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIVSIEAFEH  129 (280)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchhhhhHhhHHHH
Confidence            56899999999999999999987 65 9999999999999999999998875 48889999998888898 566677788


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       130 ~~~  132 (280)
T d2fk8a1         130 FGH  132 (280)
T ss_dssp             TCG
T ss_pred             hhh
Confidence            754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.22  E-value=1.1e-11  Score=106.26  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h~  240 (259)
                      ++.+|||+|||+|.++..|+..++.+|+++|+|+.|++.|+++....  .+++|+++|+.++++   .||+|++..+.|+
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~h  170 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAIY  170 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccCCCccceEEeeccccc
Confidence            46799999999999999988776668999999999999999887543  368999999988654   7997766655544


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      .
T Consensus       171 l  171 (254)
T d1xtpa_         171 L  171 (254)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.22  E-value=1e-11  Score=98.35  Aligned_cols=75  Identities=20%  Similarity=0.162  Sum_probs=65.1

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC----CcceeEEEec
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      ...++.+|||+|||+|.+++.++.+|+.+|+++|.++.+++.++++++..++.+ ++++++|+.+.    ...||+|+.+
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEec
Confidence            335689999999999999999999998899999999999999999999988865 99999998773    2378877654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.21  E-value=2.1e-11  Score=106.28  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCccee-EEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQILTYF-ICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~~fd-vv~~~v~~h  239 (259)
                      .++.+|||||||.|..++.+++. |+ +|+||.+|+..++.|+++++..|+. ++++..+|..+++.+|| +++..+++|
T Consensus        61 ~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~fD~i~si~~~eh  139 (285)
T d1kpga_          61 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIVSIGAFEH  139 (285)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEEEESCGGG
T ss_pred             CCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccccceeeehhhhh
Confidence            57899999999999999998887 65 9999999999999999998888775 59999999999988998 677778888


Q ss_pred             ccc
Q 025035          240 YTF  242 (259)
Q Consensus       240 ~~~  242 (259)
                      ...
T Consensus       140 ~~~  142 (285)
T d1kpga_         140 FGH  142 (285)
T ss_dssp             TCT
T ss_pred             cCc
Confidence            753

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=2.8e-11  Score=105.83  Aligned_cols=80  Identities=15%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCccee-EEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQILTYF-ICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~~fd-vv~~~v~~h  239 (259)
                      .++.+|||||||.|.+++.++++ |+ +|+||++|+..++.++++++..|+.+ +++...|......+|| |++.++++|
T Consensus        60 ~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD~i~sie~~eH  138 (291)
T d1kpia_          60 EPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVDRIVSLGAFEH  138 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCSEEEEESCGGG
T ss_pred             CCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccceEeechhHHh
Confidence            57899999999999999999876 76 99999999999999999999988864 8999999887777899 677788889


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      ....
T Consensus       139 ~~~~  142 (291)
T d1kpia_         139 FADG  142 (291)
T ss_dssp             TTCC
T ss_pred             cchh
Confidence            8653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.7e-10  Score=99.98  Aligned_cols=77  Identities=19%  Similarity=0.125  Sum_probs=56.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc----ceEEEEecccCC------CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS----CIKFLVMNISVQ------ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~----~i~~i~~D~~~~------~~~fdvv~  233 (259)
                      .+.+|||||||+|.++..|+++|. +|+|+|+|+.||+.|+++....+..    ...+...++...      ...||+|.
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            467999999999999999999987 8999999999999999988766542    244555555431      22677544


Q ss_pred             e--cccCccc
Q 025035          234 S--ERNEHYT  241 (259)
Q Consensus       234 ~--~v~~h~~  241 (259)
                      +  .++.|..
T Consensus       135 ~~~~~~~~~~  144 (292)
T d1xvaa_         135 CLGNSFAHLP  144 (292)
T ss_dssp             ECSSCGGGSC
T ss_pred             EecCchhhcC
Confidence            3  3455543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9.6e-11  Score=102.68  Aligned_cols=79  Identities=25%  Similarity=0.282  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc---ceeEEEecccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL---TYFICKSERNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~---~fdvv~~~v~~  238 (259)
                      .++++|||||||+|.+++.+++.|..+|+|+|.|+.++. +++....++. .+++++++|+.++..   .||+|.++.+.
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            468899999999999999999999889999999998865 5555555554 469999999998654   89998887776


Q ss_pred             cccc
Q 025035          239 HYTF  242 (259)
Q Consensus       239 h~~~  242 (259)
                      |...
T Consensus       113 ~~~~  116 (311)
T d2fyta1         113 YFLL  116 (311)
T ss_dssp             TTBT
T ss_pred             eecc
Confidence            6543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=7.1e-11  Score=96.90  Aligned_cols=69  Identities=20%  Similarity=0.162  Sum_probs=54.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..+.     +++|||+|+.|++.|+++       ++.++++|+.++++   .||+|++..+.|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence            456689999999999988773     579999999999999873       58999999998765   799666555554


Q ss_pred             cccc
Q 025035          240 YTFD  243 (259)
Q Consensus       240 ~~~D  243 (259)
                      +..|
T Consensus       103 h~~d  106 (208)
T d1vlma_         103 FVDD  106 (208)
T ss_dssp             GSSC
T ss_pred             cccc
Confidence            4444

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=1.5e-10  Score=96.58  Aligned_cols=78  Identities=21%  Similarity=0.242  Sum_probs=65.7

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSER  236 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v  236 (259)
                      ..++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.++.++++|..+...   .||+|+...
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTV  152 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhc
Confidence            357899999999999999999986 3 33899999999999999999999998899999999987543   789666555


Q ss_pred             cCc
Q 025035          237 NEH  239 (259)
Q Consensus       237 ~~h  239 (259)
                      ..+
T Consensus       153 ~~~  155 (213)
T d1dl5a1         153 GVD  155 (213)
T ss_dssp             BBS
T ss_pred             cHH
Confidence            443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.10  E-value=1.4e-10  Score=96.62  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++++..+  ++.++++|+....
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~  117 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPW  117 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCcc
Confidence            56899999999999999999987 54589999999999999999988764  7999999998853

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.6e-10  Score=102.06  Aligned_cols=77  Identities=32%  Similarity=0.392  Sum_probs=66.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      ++++|||||||+|.+++.+++.|..+|+|+|.|+ +++.|+++.+.+++. +++++++++.++++   .+|++.++.+.|
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~  116 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY  116 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence            5889999999999999999999988999999997 778999988888875 59999999998654   799888877655


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      ..
T Consensus       117 ~~  118 (328)
T d1g6q1_         117 FL  118 (328)
T ss_dssp             TB
T ss_pred             ee
Confidence            43

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=1.7e-10  Score=101.41  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc---ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      ++++|||||||+|.+++.+++.|..+|+|+|.|+. ...++++++.+++. +|+++++|+.+++.   .+|++.++.+.|
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~  111 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY  111 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence            58899999999999999999998879999999985 57777777777775 49999999999654   788887776655


Q ss_pred             cc
Q 025035          240 YT  241 (259)
Q Consensus       240 ~~  241 (259)
                      ..
T Consensus       112 ~l  113 (316)
T d1oria_         112 CL  113 (316)
T ss_dssp             TB
T ss_pred             ee
Confidence            54

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=1.9e-10  Score=98.91  Aligned_cols=72  Identities=21%  Similarity=0.138  Sum_probs=59.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      ++.+|||||||+|.++..+++.+. .+++|+|+|+.|++.|+++.     .+++|+++|+.++++   .||+++.....|
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~  158 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAPC  158 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCCC
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCCHH
Confidence            578999999999999999999843 48999999999999998753     379999999999876   789777655444


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       159 ~  159 (268)
T d1p91a_         159 K  159 (268)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=1.9e-10  Score=98.89  Aligned_cols=75  Identities=9%  Similarity=-0.078  Sum_probs=65.2

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCCc--ceeEEEec
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQIL--TYFICKSE  235 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~~--~fdvv~~~  235 (259)
                      ...++.+|||+|||+|.+++.++++|..+|+++|+|+.+++.++++++.+++.+ ++++++|+.+...  .||.|.+.
T Consensus       104 ~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~  181 (260)
T d2frna1         104 VAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  181 (260)
T ss_dssp             HCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             hcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEEC
Confidence            345789999999999999999999987799999999999999999999999875 9999999988654  57755543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=1.1e-10  Score=95.12  Aligned_cols=84  Identities=11%  Similarity=-0.109  Sum_probs=68.5

Q ss_pred             cchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----Ccc
Q 025035          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILT  228 (259)
Q Consensus       153 ~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~  228 (259)
                      +.+...+.....+.+|||++||+|.+++..+.+|+.+|+.||.++.+++.++++++..+..+++++++|+.+.    ...
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~  111 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTP  111 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCC
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccc
Confidence            3333334333468899999999999999999999989999999999999999999988887899999998763    227


Q ss_pred             eeEEEecc
Q 025035          229 YFICKSER  236 (259)
Q Consensus       229 fdvv~~~v  236 (259)
                      ||+|+.+-
T Consensus       112 fDlIf~DP  119 (183)
T d2fpoa1         112 HNIVFVDP  119 (183)
T ss_dssp             EEEEEECC
T ss_pred             cCEEEEcC
Confidence            88776543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.3e-11  Score=101.03  Aligned_cols=49  Identities=18%  Similarity=0.317  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~  211 (259)
                      .++.+|||||||+|.++..++..+..+|+|+|+|+.||+.|+++++..+
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            3577999999999999888887776689999999999999999987654

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.5e-10  Score=95.74  Aligned_cols=69  Identities=10%  Similarity=0.000  Sum_probs=56.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-----~~~fdvv~  233 (259)
                      ++++|||||||+|..+..+++.+..+|+|||+|+.+++.|++++...+. ++.++..++...     ..+||.++
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~  126 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGIL  126 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-cccccccccccccccccccccccee
Confidence            5789999999999999999988656899999999999999999887654 678888776542     22788665

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.99  E-value=7.8e-10  Score=91.63  Aligned_cols=61  Identities=18%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +..|||||||+|..+..+|+. +...++|||+++.++..|.++++..++.|+.++++|+..+
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l   91 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL   91 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh
Confidence            457999999999999999998 3458999999999999999999999999999999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-09  Score=91.29  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCC-----cceEEEEecccCCCc---ceeE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-----SCIKFLVMNISVQIL---TYFI  231 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l-----~~i~~i~~D~~~~~~---~fdv  231 (259)
                      ..++.+|||||||+|+.+..|++. + ..+|+++|+++.+++.|++++++.++     .++.++++|......   .||+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            356889999999999999999886 3 34899999999999999999987654     368999999987544   7886


Q ss_pred             EEecccCc
Q 025035          232 CKSERNEH  239 (259)
Q Consensus       232 v~~~v~~h  239 (259)
                      |+.....+
T Consensus       154 I~~~~~~~  161 (224)
T d1i1na_         154 IHVGAAAP  161 (224)
T ss_dssp             EEECSBBS
T ss_pred             hhhhcchh
Confidence            66554433

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.96  E-value=1.1e-09  Score=92.92  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-CcceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-ILTYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~~fdvv~~~v~~h  239 (259)
                      .+.++|||||||+|.++..++++. ..+++++|+ +.+++.+++++...++. +++++.+|+.+. +..||+++...+.|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh  157 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLL  157 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccc
Confidence            346799999999999999999983 348999998 55999999999888874 699999998774 34789777666655


Q ss_pred             c
Q 025035          240 Y  240 (259)
Q Consensus       240 ~  240 (259)
                      .
T Consensus       158 ~  158 (253)
T d1tw3a2         158 N  158 (253)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.96  E-value=1.4e-09  Score=92.85  Aligned_cols=76  Identities=17%  Similarity=0.156  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcC-CcceEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~-l~~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      .++.+|||+|||+|.++..|++. + ..+|+++|+++.+++.|++++++.+ ..++++.++|+.+...  .||.++.++.
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p  163 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP  163 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence            57899999999999999999986 3 3489999999999999999998764 4579999999988533  6887765544


Q ss_pred             C
Q 025035          238 E  238 (259)
Q Consensus       238 ~  238 (259)
                      .
T Consensus       164 ~  164 (250)
T d1yb2a1         164 D  164 (250)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.95  E-value=6.2e-10  Score=90.58  Aligned_cols=90  Identities=13%  Similarity=0.131  Sum_probs=72.9

Q ss_pred             cchhccccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccC
Q 025035          146 NHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISV  224 (259)
Q Consensus       146 ~~~~~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~  224 (259)
                      +..+..++.+...+.....+.+|||++||+|.+++..+.+|..+|+++|.++.+++.++++++..+.. +++++++|+.+
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~  102 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR  102 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh
Confidence            33344555555566666678999999999999999999999989999999999999999999988875 59999999876


Q ss_pred             C-------CcceeEEEec
Q 025035          225 Q-------ILTYFICKSE  235 (259)
Q Consensus       225 ~-------~~~fdvv~~~  235 (259)
                      .       ...||+|+.+
T Consensus       103 ~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1         103 ALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             HHHHHHHTTCCEEEEEEC
T ss_pred             hhhhhcccCCCcceEEec
Confidence            2       2268877654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.94  E-value=1.6e-09  Score=89.72  Aligned_cols=62  Identities=21%  Similarity=0.285  Sum_probs=56.1

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      +..|||||||+|.++..+|+. +...++|||+++.++..|.+++.+.++.|+.++++|+..+.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~   94 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT   94 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGG
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHh
Confidence            457999999999999999998 44589999999999999999999999999999999998743

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1e-09  Score=97.00  Aligned_cols=77  Identities=10%  Similarity=0.108  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc-------C--CcceEEEEecccCCCc-----
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-------G--FSCIKFLVMNISVQIL-----  227 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~-------~--l~~i~~i~~D~~~~~~-----  227 (259)
                      .++.+|||||||+|.+++.+++. ++.+++|||+|+.+++.|+++.+..       |  ..+++|+++|+.+.++     
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            56889999999999999999876 6668999999999999998876542       2  2469999999998654     


Q ss_pred             ceeEEEecccCc
Q 025035          228 TYFICKSERNEH  239 (259)
Q Consensus       228 ~fdvv~~~v~~h  239 (259)
                      ..|+++.+...|
T Consensus       230 ~advi~~~~~~f  241 (328)
T d1nw3a_         230 NTSVIFVNNFAF  241 (328)
T ss_dssp             HCSEEEECCTTT
T ss_pred             cceEEEEcceec
Confidence            346666555444

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.93  E-value=1.5e-09  Score=91.39  Aligned_cols=62  Identities=8%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      .++.+|||||||+|..+..+++.+ ...|+|+|+|+.|++.+++++...+  ++..+.+|.....
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~--ni~~i~~d~~~~~  135 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERE--NIIPILGDANKPQ  135 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCT--TEEEEECCTTCGG
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhc--ccceEEEeeccCc
Confidence            568999999999999999999983 3489999999999999999887653  6788888887743

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.90  E-value=1.2e-09  Score=96.59  Aligned_cols=74  Identities=24%  Similarity=0.214  Sum_probs=64.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-------CcceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-------ILTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-------~~~fdvv~~  234 (259)
                      .++.+|||+|||+|.+++.++..|..+|+++|+|+.+++.+++|++.+|+. +++++++|+.+.       ...||+|+.
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~  223 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  223 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhc
Confidence            468999999999999999999998779999999999999999999999985 599999998762       237887765


Q ss_pred             cc
Q 025035          235 ER  236 (259)
Q Consensus       235 ~v  236 (259)
                      +.
T Consensus       224 Dp  225 (324)
T d2as0a2         224 DP  225 (324)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=3.5e-09  Score=90.95  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhc---CCcceEEEEecccCCCc---ceeEEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVMNISVQIL---TYFICK  233 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~---~l~~i~~i~~D~~~~~~---~fdvv~  233 (259)
                      +.++.+|||+|||+|.++..|++. |. .+|+++|+++++++.|+++++..   ...+++++++|+.+..+   .||.++
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~  173 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  173 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEE
Confidence            367899999999999999999997 43 49999999999999999998764   23579999999987543   788766


Q ss_pred             eccc
Q 025035          234 SERN  237 (259)
Q Consensus       234 ~~v~  237 (259)
                      .++.
T Consensus       174 ldlp  177 (264)
T d1i9ga_         174 LDML  177 (264)
T ss_dssp             EESS
T ss_pred             EecC
Confidence            5543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=1.1e-09  Score=96.68  Aligned_cols=72  Identities=19%  Similarity=0.190  Sum_probs=62.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC-------CcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ-------ILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~-------~~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.++.. ..+|+++|+|+.+++.|+++++.+|+.+++++++|+.+.       ...||+|+.+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D  222 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  222 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             hCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence            46889999999999999998865 459999999999999999999999998899999998763       2278877654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.86  E-value=5.1e-09  Score=87.87  Aligned_cols=76  Identities=20%  Similarity=0.157  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEec-ccC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSE-RNE  238 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~-v~~  238 (259)
                      .++.+|||||||+|+++..|++.+. +|+++|+++.+++.|+++....  .++.++++|......   +||.|+.. .+.
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l~~-~V~aiE~~~~~~~~A~~~~~~~--~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~~  145 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEIVD-KVVSVEINEKMYNYASKLLSYY--NNIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTC--SSEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             cccceEEEecCCCCHHHHHHHHHhc-ccccccccHHHHHHHHHHHhcc--cccccccCchhhcchhhhhHHHHHhhcchh
Confidence            5788999999999999999999854 9999999999999999987643  489999999877332   68855443 334


Q ss_pred             ccc
Q 025035          239 HYT  241 (259)
Q Consensus       239 h~~  241 (259)
                      |.+
T Consensus       146 ~ip  148 (224)
T d1vbfa_         146 TLL  148 (224)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            443

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=3.8e-09  Score=84.88  Aligned_cols=72  Identities=18%  Similarity=0.222  Sum_probs=57.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC-----CCcceeEEEec
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV-----QILTYFICKSE  235 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~-----~~~~fdvv~~~  235 (259)
                      .++.+|||+|||+|.+++.++.+|. +|+++|.++.+++.++++++.+++.+ +....+|...     ....||+|+.+
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~D  117 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEc
Confidence            4688999999999999999999987 89999999999999999999988743 4444444321     22378887654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.85  E-value=1.8e-09  Score=94.81  Aligned_cols=71  Identities=24%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCC-------cceeEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQI-------LTYFICK  233 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~-------~~fdvv~  233 (259)
                      .++.+|||++||+|.+++.++..|. +|++||.|+.+++.|++|++.+++.  +++|+++|+.+..       ..||+|+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            4578999999999999999999887 8999999999999999999998875  4999999997732       2677665


Q ss_pred             e
Q 025035          234 S  234 (259)
Q Consensus       234 ~  234 (259)
                      .
T Consensus       210 l  210 (309)
T d2igta1         210 T  210 (309)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.84  E-value=4.5e-09  Score=87.64  Aligned_cols=74  Identities=16%  Similarity=0.256  Sum_probs=63.5

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSER  236 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v  236 (259)
                      ..++.+|||||||+|+.+..+++. | .+|+++|..+.+++.|++++++.++.|+.++++|..+...   +||.|+...
T Consensus        76 l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_          76 LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTA  153 (215)
T ss_dssp             CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeec
Confidence            357889999999999999999987 5 4799999999999999999999999899999999988432   788554433

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=7.5e-09  Score=88.52  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             CCEEEEEccCcChhHHHHHhc------CC-CcEEEEeCCHHHHHHHHHHhHhcC-CcceE--EEEecccC---------C
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ------GF-SDLTGVDYSEDAINLAQSLANRDG-FSCIK--FLVMNISV---------Q  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~------g~-~~V~giD~S~~~i~~a~~~~~~~~-l~~i~--~i~~D~~~---------~  225 (259)
                      ..+|||||||+|.++..+++.      +. .+++|+|+|+.|++.++++.+... +.++.  +.+.++.+         .
T Consensus        41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (280)
T d1jqea_          41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKE  120 (280)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSS
T ss_pred             CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCC
Confidence            458999999999998877654      11 268999999999999999876542 33444  44444322         2


Q ss_pred             CcceeEEEecccCccccc
Q 025035          226 ILTYFICKSERNEHYTFD  243 (259)
Q Consensus       226 ~~~fdvv~~~v~~h~~~D  243 (259)
                      ...||+|.+....|+..|
T Consensus       121 ~~~fD~I~~~~~l~~~~d  138 (280)
T d1jqea_         121 LQKWDFIHMIQMLYYVKD  138 (280)
T ss_dssp             CCCEEEEEEESCGGGCSC
T ss_pred             CCceeEEEEccceecCCC
Confidence            337997766666555544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.5e-09  Score=87.76  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=60.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC---------cceeEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI---------LTYFIC  232 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~---------~~fdvv  232 (259)
                      +..+|||||||+|.++..|+.+ +..+|+|+|+|+.+++.|+++++.+++.+ +.+++.+.....         ..||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3569999999999999999987 33499999999999999999999999864 888876654421         147766


Q ss_pred             EecccCc
Q 025035          233 KSERNEH  239 (259)
Q Consensus       233 ~~~v~~h  239 (259)
                      .++--.+
T Consensus       141 vsNPPY~  147 (250)
T d2h00a1         141 MCNPPFF  147 (250)
T ss_dssp             EECCCCC
T ss_pred             EecCccc
Confidence            6655544

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.83  E-value=4.3e-09  Score=90.72  Aligned_cols=73  Identities=23%  Similarity=0.187  Sum_probs=61.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC----cceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI----LTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~----~~fdvv~~~v  236 (259)
                      ...+|||+|||+|.++..+++.+..+|+++|+|+.+++.|++|++++++.+ +.+..+|+.+..    ..||++.++-
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNP  187 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNP  187 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECC
T ss_pred             cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEcc
Confidence            356899999999999999998876799999999999999999999999864 788888887743    2678776664

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=4.8e-09  Score=88.20  Aligned_cols=73  Identities=14%  Similarity=0.173  Sum_probs=58.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC------cceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI------LTYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~------~~fdvv~~  234 (259)
                      .++.+|||+|||+|.++..|++. |. .+|+|+|+|+.|++.++++++..+  ++..+..|.....      ..+|+++.
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEE
Confidence            57899999999999999999997 43 489999999999999999887554  6788888886632      25666655


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      .+.
T Consensus       150 d~~  152 (227)
T d1g8aa_         150 DVA  152 (227)
T ss_dssp             CCC
T ss_pred             Ecc
Confidence            443

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.81  E-value=8.7e-09  Score=88.52  Aligned_cols=73  Identities=19%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCCCc--ceeEEEe
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      +.++.+|||+|||+|.++..|++. + ..+|+++|+++.+++.|++++++.++. ++.+...|+.....  .+|.++.
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEe
Confidence            367899999999999999999987 3 348999999999999999999999874 58888888766432  5665543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.3e-09  Score=91.63  Aligned_cols=48  Identities=21%  Similarity=0.265  Sum_probs=40.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      .++.+|||||||+|.++...+..+..+|+|+|+|+.|++.+++++...
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcC
Confidence            357899999999998876666555569999999999999999876543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.77  E-value=1.8e-08  Score=85.68  Aligned_cols=77  Identities=17%  Similarity=0.070  Sum_probs=62.7

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC-CcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ-ILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~-~~~fdvv~~~v~~h~  240 (259)
                      ..++|||||||+|.++..++++ +..+++++|+ +.+++.+++++...++. ++.++.+|..+. +..+|+++...++|.
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~  159 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLN  159 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGG
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccccccc
Confidence            4579999999999999999998 3348999998 67999999999888765 599999999874 347887666666654


Q ss_pred             c
Q 025035          241 T  241 (259)
Q Consensus       241 ~  241 (259)
                      -
T Consensus       160 ~  160 (256)
T d1qzza2         160 W  160 (256)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.73  E-value=7.2e-09  Score=91.20  Aligned_cols=75  Identities=17%  Similarity=0.129  Sum_probs=63.8

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC-------CcceeE
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ-------ILTYFI  231 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~-------~~~fdv  231 (259)
                      ...++++|||++||+|.+++.++..|..+|+++|+|+.+++.+++|++.+++.  +++|+++|+.+.       ...||+
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~  220 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  220 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             HhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence            34568999999999999999988888879999999999999999999999874  699999999763       126887


Q ss_pred             EEec
Q 025035          232 CKSE  235 (259)
Q Consensus       232 v~~~  235 (259)
                      |+.+
T Consensus       221 Ii~D  224 (317)
T d2b78a2         221 IIID  224 (317)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            6543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3e-08  Score=87.38  Aligned_cols=76  Identities=21%  Similarity=0.175  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcC-----------CcceEEEEecccCCCc-
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVMNISVQIL-  227 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~-----------l~~i~~i~~D~~~~~~-  227 (259)
                      +.++.+|||+|||+|.++..|++. | ..+|+++|+++.+++.|++++++.+           ..++.++++|+.+... 
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~  175 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED  175 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence            367999999999999999999987 4 3489999999999999999987542           2369999999987432 


Q ss_pred             ----ceeEEEeccc
Q 025035          228 ----TYFICKSERN  237 (259)
Q Consensus       228 ----~fdvv~~~v~  237 (259)
                          .||.++.++.
T Consensus       176 ~~~~~fD~V~LD~p  189 (324)
T d2b25a1         176 IKSLTFDAVALDML  189 (324)
T ss_dssp             -----EEEEEECSS
T ss_pred             cCCCCcceEeecCc
Confidence                6776655443

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=4.4e-08  Score=86.75  Aligned_cols=62  Identities=23%  Similarity=0.275  Sum_probs=57.0

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++.+|||+.||+|.+++.|++.+ .+|+|+|.++.+++.|+++++.+|+.|++|++++..+.
T Consensus       211 ~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         211 QPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEED  272 (358)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSC
T ss_pred             CCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhh
Confidence            356799999999999999999875 49999999999999999999999999999999998873

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=6.7e-08  Score=87.54  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      +.++.+|||||||+|..++.++.. |+.+|+|||+|+.|++.|+++++..
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~  263 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEEL  263 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence            367889999999999999999987 7668999999999999999987653

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.60  E-value=5.8e-08  Score=81.16  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=59.0

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc----CC---CcEEEEeCCHHHHHHHHHHhHhc-----CCcceEEEEecccCCCc--
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ----GF---SDLTGVDYSEDAINLAQSLANRD-----GFSCIKFLVMNISVQIL--  227 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~----g~---~~V~giD~S~~~i~~a~~~~~~~-----~l~~i~~i~~D~~~~~~--  227 (259)
                      +.++.+|||||||+|+.+..+++.    |.   .+|+++|+++.+++.|+++....     ++.++.++++|..+...  
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            356889999999999999888875    21   37999999999999999986543     34579999999987432  


Q ss_pred             -ceeEEEeccc
Q 025035          228 -TYFICKSERN  237 (259)
Q Consensus       228 -~fdvv~~~v~  237 (259)
                       +||.|+....
T Consensus       158 ~~fD~Iiv~~a  168 (223)
T d1r18a_         158 APYNAIHVGAA  168 (223)
T ss_dssp             CSEEEEEECSC
T ss_pred             cceeeEEEEee
Confidence             7885544443

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.58  E-value=3e-08  Score=80.30  Aligned_cols=87  Identities=13%  Similarity=-0.017  Sum_probs=66.0

Q ss_pred             ccccchHHhhccCCCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcc--eEEEEecccCC--
Q 025035          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVMNISVQ--  225 (259)
Q Consensus       150 ~~~~~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~--i~~i~~D~~~~--  225 (259)
                      ..++.+...+.....+.+|||+.||+|.+++..+.+|..+|+.||.+..+++..+++++..++.+  ..+++.|+.+.  
T Consensus        29 ~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~  108 (183)
T d2ifta1          29 RVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK  108 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred             HHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence            33344444443334678999999999999999999999999999999999999999999887643  66666665441  


Q ss_pred             ----CcceeEEEecc
Q 025035          226 ----ILTYFICKSER  236 (259)
Q Consensus       226 ----~~~fdvv~~~v  236 (259)
                          ...||+|+.+-
T Consensus       109 ~~~~~~~fDlIFlDP  123 (183)
T d2ifta1         109 QPQNQPHFDVVFLDP  123 (183)
T ss_dssp             SCCSSCCEEEEEECC
T ss_pred             ccccCCcccEEEech
Confidence                12688776543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.56  E-value=5.9e-08  Score=81.73  Aligned_cols=80  Identities=13%  Similarity=0.128  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..|++.+. +|++||+++.+++.++++....  .+++++++|+.+...   ....+.+++-.+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~~--~n~~i~~~D~l~~~~~~~~~~~vv~NLPYn   96 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVDH--DNFQVLNKDILQFKFPKNQSYKIFGNIPYN   96 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTTC--CSEEEECCCGGGCCCCSSCCCEEEEECCGG
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhcc--cchhhhhhhhhhccccccccceeeeeehhh
Confidence            4688999999999999999999865 9999999999999999876543  489999999998654   222455666666


Q ss_pred             ccccee
Q 025035          240 YTFDLY  245 (259)
Q Consensus       240 ~~~D~i  245 (259)
                      ++-+++
T Consensus        97 Iss~il  102 (235)
T d1qama_          97 ISTDII  102 (235)
T ss_dssp             GHHHHH
T ss_pred             hhHHHH
Confidence            655543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.6e-07  Score=77.80  Aligned_cols=75  Identities=17%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCCC---------cc
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQI---------LT  228 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~~---------~~  228 (259)
                      ...++++|||||||+|..++.+++.  ...+|+++|+++.+++.|+++.++.|+.+ |+++.+|..+..         ..
T Consensus        53 ~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          53 REYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             HHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             HhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccc
Confidence            3356789999999999999999985  23499999999999999999999999864 999999987731         14


Q ss_pred             eeEEEec
Q 025035          229 YFICKSE  235 (259)
Q Consensus       229 fdvv~~~  235 (259)
                      ||+++..
T Consensus       133 ~D~ifiD  139 (214)
T d2cl5a1         133 LDMVFLD  139 (214)
T ss_dssp             EEEEEEC
T ss_pred             cceeeec
Confidence            6766544

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.38  E-value=8.7e-09  Score=87.52  Aligned_cols=80  Identities=18%  Similarity=0.252  Sum_probs=64.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc---ceeEEEecccCc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL---TYFICKSERNEH  239 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~---~fdvv~~~v~~h  239 (259)
                      .++.+|||||||+|.++..|++.+. +|++||+++.+++.++++....  .+++++++|+.+.+.   .+..+.+++-.|
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~--~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLN--TRVTLIHQDILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTC--SEEEECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhc--cchhhhhhhhhccccccceeeeEeeeeehh
Confidence            3577999999999999999999965 9999999999998887765432  479999999998654   445667777777


Q ss_pred             ccccee
Q 025035          240 YTFDLY  245 (259)
Q Consensus       240 ~~~D~i  245 (259)
                      ++-+++
T Consensus       105 Ist~il  110 (245)
T d1yuba_         105 LSTQII  110 (245)
T ss_dssp             SCHHHH
T ss_pred             hhHHHH
Confidence            766654

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.36  E-value=4.7e-07  Score=73.77  Aligned_cols=62  Identities=11%  Similarity=0.173  Sum_probs=54.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .++..+||++||+|..+..++++ +..+|+|+|.++.|++.|+++++..+ .++.++++++.+.
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~   84 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREA   84 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGH
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhH
Confidence            46789999999999999999987 44599999999999999999998766 3799999988764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=7.3e-07  Score=74.08  Aligned_cols=84  Identities=12%  Similarity=0.111  Sum_probs=67.1

Q ss_pred             chHHhhccCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccCC-----
Q 025035          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISVQ-----  225 (259)
Q Consensus       154 ~~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~~-----  225 (259)
                      .+...+.+..+.++|||||||+|.-+..+++.  ...+|+.+|.++...+.|+++.++.|+.+ ++++.+|+.+.     
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            34444445567899999999999999999986  23499999999999999999999998865 99999998662     


Q ss_pred             ----CcceeEEEeccc
Q 025035          226 ----ILTYFICKSERN  237 (259)
Q Consensus       226 ----~~~fdvv~~~v~  237 (259)
                          ..+||+|+.+.-
T Consensus       129 ~~~~~~~fD~ifiD~d  144 (219)
T d2avda1         129 AAGEAGTFDVAVVDAD  144 (219)
T ss_dssp             HTTCTTCEEEEEECSC
T ss_pred             hhcccCCccEEEEeCC
Confidence                236887765543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=7.6e-06  Score=71.06  Aligned_cols=73  Identities=25%  Similarity=0.209  Sum_probs=56.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc----C--CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g--~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~  234 (259)
                      .++.+|||.|||+|.++..+.++    +  ..+++|+|+++.+++.|+.++...+. +..+.++|......  .||+|.+
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccccccc
Confidence            34578999999999999888753    1  12799999999999999999887765 56777777665332  7887765


Q ss_pred             cc
Q 025035          235 ER  236 (259)
Q Consensus       235 ~v  236 (259)
                      +-
T Consensus       195 NP  196 (328)
T d2f8la1         195 DL  196 (328)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.7e-06  Score=73.06  Aligned_cols=82  Identities=13%  Similarity=0.164  Sum_probs=65.4

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCCCc-ceeEEEecccCcc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQIL-TYFICKSERNEHY  240 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~~~-~fdvv~~~v~~h~  240 (259)
                      .++..|||||+|.|.++..|++++. +|++||+.+.+++..+++...... .+++++.+|+.+... .+..+.+++-.++
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~~vV~NLPY~I   98 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQI   98 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSEEEEECCGGG
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhhhhhcchHHHH
Confidence            3578999999999999999999975 999999999999999998765543 479999999998655 3345556665555


Q ss_pred             cccee
Q 025035          241 TFDLY  245 (259)
Q Consensus       241 ~~D~i  245 (259)
                      +-.++
T Consensus        99 ss~il  103 (278)
T d1zq9a1          99 SSPFV  103 (278)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=8.8e-06  Score=66.80  Aligned_cols=73  Identities=16%  Similarity=0.087  Sum_probs=62.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v  236 (259)
                      ++.+|||+|||.|.-++.++-. +..+|+.+|.+..-+...++.....++.++++++..+++...  .||++.+..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhh
Confidence            4679999999999999999975 445999999999999999999999999899999999998633  788766543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.06  E-value=1.9e-06  Score=73.04  Aligned_cols=80  Identities=11%  Similarity=0.049  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--------ceeEEEe
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--------TYFICKS  234 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--------~fdvv~~  234 (259)
                      .++..|||||||.|.++..|++++. +|++||+++.+++..+++....  .+++++.+|+.+...        ....+.+
T Consensus        20 ~~~d~vlEIGpG~G~LT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~~~~~~~~~~~~~vvg   96 (252)
T d1qyra_          20 QKGQAMVEIGPGLAALTEPVGERLD-QLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAEKMGQPLRVFG   96 (252)
T ss_dssp             CTTCCEEEECCTTTTTHHHHHTTCS-CEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHHHHTSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHccCC-ceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcccccccccCCCeEEEe
Confidence            3578999999999999999999865 9999999999999998754322  479999999998543        1124556


Q ss_pred             cccCcccccee
Q 025035          235 ERNEHYTFDLY  245 (259)
Q Consensus       235 ~v~~h~~~D~i  245 (259)
                      ++-.+++-+++
T Consensus        97 NlPY~Iss~Il  107 (252)
T d1qyra_          97 NLPYNISTPLM  107 (252)
T ss_dssp             ECCTTTHHHHH
T ss_pred             cchHHHHHHHH
Confidence            66666666644

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.04  E-value=3.3e-06  Score=70.36  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             hHHhhccCCCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcc-eEEEEecccC
Q 025035          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVMNISV  224 (259)
Q Consensus       155 ~~~~l~~~~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~-i~~i~~D~~~  224 (259)
                      +..++.+..++++||+|||++|.-+..+++. + ..+|+.+|.++...+.|+++.++.|+.+ |+++++++.+
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          50 FLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             HHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             HHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            3344444457899999999999999999975 2 3499999999999999999999999865 9999999976

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.74  E-value=4.1e-05  Score=64.10  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCccc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHYT  241 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~~  241 (259)
                      ...+|||||||+|.++..++++ +..+++.+|..+ .++.      .....+++++.+|+.+.....|+++...++|.-
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~------~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~  152 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VIEN------APPLSGIEHVGGDMFASVPQGDAMILKAVCHNW  152 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTT------CCCCTTEEEEECCTTTCCCCEEEEEEESSGGGS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hhhc------cCCCCCeEEecCCcccccccceEEEEehhhhhC
Confidence            4579999999999999999988 444999999854 4331      122347999999998866666866555555543

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.71  E-value=2.8e-05  Score=65.12  Aligned_cols=70  Identities=13%  Similarity=0.085  Sum_probs=52.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCcc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEHY  240 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h~  240 (259)
                      ...+|||||||+|.++..++++ +..++++.|..+ .++.+.      ...+++++.+|+.+....+|+++...++|.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~rv~~~~gD~f~~~p~aD~~~l~~vLHd  150 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VVENLS------GSNNLTYVGGDMFTSIPNADAVLLKYILHN  150 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HHTTCC------CBTTEEEEECCTTTCCCCCSEEEEESCGGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HHHhCc------ccCceEEEecCcccCCCCCcEEEEEeeccc
Confidence            3478999999999999999998 445999999854 443221      124799999999987667887666555554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.70  E-value=4.9e-05  Score=65.95  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc--C---CcceEEEEecccCC----CcceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVMNISVQ----ILTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~--~---l~~i~~i~~D~~~~----~~~fdvv~  233 (259)
                      .+++||.||+|.|..+..+++. +..+|++||+++.+++.|++.+...  +   -++++++.+|+.+.    ...||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            4689999999999999999887 4569999999999999999987432  1   13699999999883    34799887


Q ss_pred             ecccC
Q 025035          234 SERNE  238 (259)
Q Consensus       234 ~~v~~  238 (259)
                      .....
T Consensus       157 ~D~~d  161 (312)
T d1uira_         157 IDLTD  161 (312)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            66543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00011  Score=62.95  Aligned_cols=75  Identities=13%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             CCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc------ceeEEE
Q 025035          162 YLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL------TYFICK  233 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~------~fdvv~  233 (259)
                      ..++.+|||++||.|.-+..++..  +...|+++|+++.-++.+++++++.|+.++.+...|......      .||.|+
T Consensus        92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL  171 (293)
T d2b9ea1          92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  171 (293)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence            356889999999999988888865  344899999999999999999999999889999999876432      577665


Q ss_pred             ecc
Q 025035          234 SER  236 (259)
Q Consensus       234 ~~v  236 (259)
                      .+.
T Consensus       172 ~Da  174 (293)
T d2b9ea1         172 LDP  174 (293)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.68  E-value=3.9e-05  Score=65.40  Aligned_cols=76  Identities=18%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC----------CcceEEEEecccCC---Ccce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG----------FSCIKFLVMNISVQ---ILTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~----------l~~i~~i~~D~~~~---~~~f  229 (259)
                      ..+++||.||+|.|..+..+.+.+..+|++||+++.+++.|++.....+          -++++++.+|+...   ...|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            3578999999999999999998876799999999999999998663221          24699999998753   2378


Q ss_pred             eEEEecccC
Q 025035          230 FICKSERNE  238 (259)
Q Consensus       230 dvv~~~v~~  238 (259)
                      |+|+.+...
T Consensus       151 DvIi~D~~~  159 (276)
T d1mjfa_         151 DVIIADSTD  159 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CEEEEeCCC
Confidence            877765544

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.49  E-value=6.1e-05  Score=66.98  Aligned_cols=50  Identities=20%  Similarity=0.052  Sum_probs=44.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS  213 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~  213 (259)
                      ++.+|||..||+|..++.++.. |..+|++.|+|+.+++.+++|++.+++.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~   95 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDG   95 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCS
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCcc
Confidence            5789999999999999987765 6669999999999999999999988753

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=0.00016  Score=60.34  Aligned_cols=74  Identities=16%  Similarity=0.134  Sum_probs=61.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC------CcceeEEEecc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ------ILTYFICKSER  236 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~------~~~fdvv~~~v  236 (259)
                      ...+|+|||+|.|.-++.++-. +..+|+.+|.+..-+...+......++.++..++..+++.      ...||++.+-.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            3579999999999999999864 5569999999999999999999999998999999887653      22688766544


Q ss_pred             c
Q 025035          237 N  237 (259)
Q Consensus       237 ~  237 (259)
                      +
T Consensus       150 v  150 (239)
T d1xdza_         150 V  150 (239)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=0.00023  Score=61.16  Aligned_cols=75  Identities=16%  Similarity=0.139  Sum_probs=59.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+++||-||+|.|..+..+++. +..+|++||+++.+++.|++......    -++++++.+|+.+.    ...||+|+.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            4689999999999999999987 45689999999999999999764321    24699999998773    337888776


Q ss_pred             cccC
Q 025035          235 ERNE  238 (259)
Q Consensus       235 ~v~~  238 (259)
                      +...
T Consensus       169 D~~d  172 (295)
T d1inla_         169 DSTD  172 (295)
T ss_dssp             EC--
T ss_pred             cCCC
Confidence            6544

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.30  E-value=0.0002  Score=59.47  Aligned_cols=68  Identities=16%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             CCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCcceeEEEecccCc
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQILTYFICKSERNEH  239 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~~fdvv~~~v~~h  239 (259)
                      ..+|||||||+|.++..++++ +..+++++|..+ .++.++      ...+++++.+|+.+.....|+.+...+.|
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~r~~~~~~d~~~~~P~ad~~~l~~vlh  150 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP------SYPGVEHVGGDMFVSIPKADAVFMKWICH  150 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC------CCTTEEEEECCTTTCCCCCSCEECSSSST
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc------cCCceEEecccccccCCCcceEEEEEEee
Confidence            578999999999999999998 444999999976 332211      12479999999987533334333333333

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.24  E-value=0.00012  Score=58.87  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc--ceeEEEeccc
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL--TYFICKSERN  237 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~-g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~--~fdvv~~~v~  237 (259)
                      .++.+|||.|||+|.++..+.++ + ..+++|+|+++.+++.++         ...++++|......  .||++..+-.
T Consensus        18 ~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~---------~~~~~~~~~~~~~~~~~fd~ii~npP   87 (223)
T d2ih2a1          18 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP---------WAEGILADFLLWEPGEAFDLILGNPP   87 (223)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT---------TEEEEESCGGGCCCSSCEEEEEECCC
T ss_pred             CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc---------cceeeeeehhccccccccceecccCc
Confidence            45789999999999999888765 2 347999999986644322         35667777766433  7776665543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.00051  Score=58.21  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc-C---CcceEEEEecccC----CCcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-G---FSCIKFLVMNISV----QILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~-~---l~~i~~i~~D~~~----~~~~fdvv~~  234 (259)
                      .+++||-||.|.|..+..+.+. +..+|+.+|+.+.+++.|++..... +   -++++++.+|+..    ....||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            4689999999999999999987 5569999999999999999976432 1   2469999999877    3347998877


Q ss_pred             cccC
Q 025035          235 ERNE  238 (259)
Q Consensus       235 ~v~~  238 (259)
                      +...
T Consensus       155 D~~~  158 (274)
T d1iy9a_         155 DSTE  158 (274)
T ss_dssp             SCSS
T ss_pred             cCCC
Confidence            7654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00064  Score=57.90  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=60.1

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc----CCcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~----~l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+++||-||.|.|..+..+.+. +..+|+++|+.+.+++.|++.....    .-++++++.+|+.+.    ...||+|..
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            4689999999999999999987 5669999999999999999976431    124799999998772    337888776


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       158 D~~  160 (285)
T d2o07a1         158 DSS  160 (285)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            654

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0005  Score=54.64  Aligned_cols=65  Identities=18%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC-----------cce
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI-----------LTY  229 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~-----------~~f  229 (259)
                      .++.+||||||++|.++..+.++  +...|+++|+.+ +          ..+.++.++++|+.+..           ..+
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M----------DPIVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c----------cccCCceEeecccccchhhhhhhhhccCcce
Confidence            46789999999999999998876  345899999876 1          23457899999998732           268


Q ss_pred             eEEEecccC
Q 025035          230 FICKSERNE  238 (259)
Q Consensus       230 dvv~~~v~~  238 (259)
                      |+|.+++..
T Consensus        90 DlVlSD~ap   98 (180)
T d1ej0a_          90 QVVMSDMAP   98 (180)
T ss_dssp             EEEEECCCC
T ss_pred             eEEEecccc
Confidence            888877654

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.16  E-value=0.00054  Score=59.11  Aligned_cols=76  Identities=11%  Similarity=-0.027  Sum_probs=61.4

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhc--CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC---cceeEEEec
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI---LTYFICKSE  235 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~--g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~---~~fdvv~~~  235 (259)
                      ...++.+|||++||.|.=+..++..  +...++++|.++.-++..++++++.|+.++.....|.....   ..||.|+.+
T Consensus       113 ~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         113 DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             cCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence            3467889999999999988888765  23479999999999999999999999988888888877643   267766543


Q ss_pred             c
Q 025035          236 R  236 (259)
Q Consensus       236 v  236 (259)
                      .
T Consensus       193 a  193 (313)
T d1ixka_         193 A  193 (313)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.11  E-value=0.00022  Score=59.75  Aligned_cols=72  Identities=11%  Similarity=-0.033  Sum_probs=55.4

Q ss_pred             CEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC---------CcceEEEEecccCC----CcceeEE
Q 025035          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG---------FSCIKFLVMNISVQ----ILTYFIC  232 (259)
Q Consensus       166 ~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~---------l~~i~~i~~D~~~~----~~~fdvv  232 (259)
                      .+|||.-||.|..++.++..|+ +|++||.++.+....++.+++..         ..+++++++|..+.    ...||+|
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI  168 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV  168 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred             CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence            4899999999999999999987 89999999988777766554321         12699999997663    2367877


Q ss_pred             EecccC
Q 025035          233 KSERNE  238 (259)
Q Consensus       233 ~~~v~~  238 (259)
                      +.+-..
T Consensus       169 YlDPMF  174 (250)
T d2oyra1         169 YLDPMF  174 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            655443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.08  E-value=0.00054  Score=59.14  Aligned_cols=74  Identities=18%  Similarity=0.194  Sum_probs=59.9

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcC----CcceEEEEecccCC----CcceeEEEe
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVMNISVQ----ILTYFICKS  234 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~----l~~i~~i~~D~~~~----~~~fdvv~~  234 (259)
                      .+++||-||.|.|..+..+.+. +..+|+++|+.+.+++.|++......    -++++++.+|..+.    ...||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            4689999999999999999997 44699999999999999999764321    14699999998873    337898776


Q ss_pred             ccc
Q 025035          235 ERN  237 (259)
Q Consensus       235 ~v~  237 (259)
                      +..
T Consensus       186 D~~  188 (312)
T d2b2ca1         186 DSS  188 (312)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.04  E-value=0.00076  Score=57.58  Aligned_cols=75  Identities=12%  Similarity=0.212  Sum_probs=59.5

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhc----CCcceEEEEecccC----CC-cceeEEE
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVMNISV----QI-LTYFICK  233 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~----~l~~i~~i~~D~~~----~~-~~fdvv~  233 (259)
                      .+++||-||.|.|..+..+.+. +..+|+++|+++.+++.+++.....    .-++++.+.+|..+    .. ..||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4689999999999999999998 5568999999999999999976332    12469999999765    22 3799877


Q ss_pred             ecccC
Q 025035          234 SERNE  238 (259)
Q Consensus       234 ~~v~~  238 (259)
                      .+...
T Consensus       160 ~D~~d  164 (290)
T d1xj5a_         160 VDSSD  164 (290)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            66543

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00066  Score=54.06  Aligned_cols=58  Identities=16%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      .+++.++|..||.|..+..+++.+ .+|+|+|..+.+++.+++..    ..++.+++.+..++
T Consensus        17 ~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~   74 (182)
T d1wg8a2          17 RPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHL   74 (182)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGH
T ss_pred             CCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHH
Confidence            468899999999999999999985 49999999999999988642    23688998887773

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0016  Score=55.20  Aligned_cols=75  Identities=11%  Similarity=-0.016  Sum_probs=57.8

Q ss_pred             cCCCCCEEEEEccCcChhHHHHHhcCC-CcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC----CcceeEEEec
Q 025035          161 KYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ----ILTYFICKSE  235 (259)
Q Consensus       161 ~~~~~~~VLDiGcG~G~~~~~la~~g~-~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~----~~~fdvv~~~  235 (259)
                      ...++.+|||+++|.|.=+..++..+. ..|+++|+++.-++..++++++.|+.++.....|....    +..||.|+.+
T Consensus        99 ~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2          99 APQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             CccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence            345788999999999999999887743 47999999999999999999999986665555544321    2257765543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.77  E-value=0.0052  Score=54.62  Aligned_cols=75  Identities=16%  Similarity=0.034  Sum_probs=57.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCCCc
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQIL  227 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g----------~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~~~  227 (259)
                      .+.+|||.+||+|.++..+.++    +          ...+.|+|+++.+...|+-+....++.  ++.....|......
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~  241 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  241 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhc
Confidence            4679999999999999888764    1          125999999999999999988777653  35677777776433


Q ss_pred             --ceeEEEecccC
Q 025035          228 --TYFICKSERNE  238 (259)
Q Consensus       228 --~fdvv~~~v~~  238 (259)
                        .||+|..+--.
T Consensus       242 ~~~fD~Ii~NPPf  254 (425)
T d2okca1         242 STLVDVILANPPF  254 (425)
T ss_dssp             SSCEEEEEECCCS
T ss_pred             ccccceEEecCCC
Confidence              78877665543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.0014  Score=56.60  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=49.2

Q ss_pred             CCCEEEEEccCcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      .+..|||||.|.|.++..|.+. +..+|+++|+.+..++..++....   .+++++.+|+..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhh
Confidence            4678999999999999999987 345899999999999999887642   368899999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.61  E-value=0.00089  Score=56.26  Aligned_cols=48  Identities=8%  Similarity=-0.044  Sum_probs=42.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~  211 (259)
                      .++..|||.-||+|..+....+.|. +.+|+|++++.++.|++++....
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhcc
Confidence            4688999999999999999998876 99999999999999999876543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.49  E-value=0.0017  Score=52.92  Aligned_cols=53  Identities=23%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             hHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035          155 PVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (259)
Q Consensus       155 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~  208 (259)
                      +..++... .++..|||.-||+|..+.+..+.|. +.+|+|+++..++.|++++.
T Consensus       202 ~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            33444333 4688999999999999999888876 99999999999999999875

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.33  E-value=0.0018  Score=51.58  Aligned_cols=42  Identities=14%  Similarity=0.124  Sum_probs=31.4

Q ss_pred             CCCEEEEEccCcChhH----HHHHhc----CC-CcEEEEeCCHHHHHHHHH
Q 025035          164 SSWSVLDIGTGNGLLL----QELSKQ----GF-SDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~----~~la~~----g~-~~V~giD~S~~~i~~a~~  205 (259)
                      +..+||++|||+|.-.    ..+.+.    +. -+|+|+|+|+.+|+.|++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            3569999999999843    333332    11 169999999999999985

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.08  E-value=0.0032  Score=51.82  Aligned_cols=55  Identities=15%  Similarity=-0.011  Sum_probs=45.9

Q ss_pred             hHHhhccC-CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc
Q 025035          155 PVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (259)
Q Consensus       155 ~~~~l~~~-~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~  210 (259)
                      +..++... .++..|||.-||+|..+.+..+.|. +.+|+|+++..++.|++++...
T Consensus       197 ~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         197 IERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             HHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            33444333 4788999999999999999888876 9999999999999999988754

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.58  E-value=0.0033  Score=51.70  Aligned_cols=57  Identities=16%  Similarity=0.194  Sum_probs=40.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g-~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++.+||+||++.|.-+..++..    + ..+|+|+|+.+.......     ....+|+++++|..+.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~~i~gDs~~~  141 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDL  141 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccceeeeecccccH
Confidence            5789999999999877766642    2 359999999764332211     1224799999998763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.87  E-value=0.019  Score=45.45  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=37.3

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      ..++.+||.+|||. |..+..+++. |..+|+++|.++.-++.|++.
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            35688999999997 6677777765 777999999999999888773

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=94.85  E-value=0.037  Score=45.91  Aligned_cols=55  Identities=20%  Similarity=0.227  Sum_probs=45.4

Q ss_pred             EEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc
Q 025035          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL  227 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~  227 (259)
                      +|||+-||.|.+...|-+.|+.-+.++|+.+.+++..+.|.      .-+.+++|+.+...
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~   56 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISS   56 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCG
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCH
Confidence            79999999999999998889867779999999988887764      23567889988643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.022  Score=44.04  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=36.4

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|||. |.++..+++. |+.+|+++|.++..++.+++.
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            4688999999983 7777777776 766899999999999988763

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.062  Score=44.02  Aligned_cols=62  Identities=16%  Similarity=0.271  Sum_probs=50.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc-ceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~-~i~~i~~D~~~~  225 (259)
                      ++++.||-.|++.|.   ++..|+++|. +|+.++.++..++.+.+.++..+.. ++.++++|+.+.
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~   73 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNE   73 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCH
Confidence            468899999998876   5666777787 8999999999998888877766543 688999999884

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.46  E-value=0.029  Score=43.43  Aligned_cols=44  Identities=27%  Similarity=0.258  Sum_probs=37.6

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++.
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            5688999999996 8888888887 766899999999988888763

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.056  Score=49.01  Aligned_cols=74  Identities=14%  Similarity=0.031  Sum_probs=50.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHhHhcCCc-----ceEEE
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFL  218 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~----g---------------~~~V~giD~S~~~i~~a~~~~~~~~l~-----~i~~i  218 (259)
                      ..+.+|+|.+||+|.++....++    .               ...++|+|+++.+...|+-++-..+..     .-.+.
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~  242 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIR  242 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEE
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhh
Confidence            34679999999999999876653    1               125899999999999999887666542     12334


Q ss_pred             EecccCC----CcceeEEEecc
Q 025035          219 VMNISVQ----ILTYFICKSER  236 (259)
Q Consensus       219 ~~D~~~~----~~~fdvv~~~v  236 (259)
                      ..+....    ...||+|+.+-
T Consensus       243 ~~~~l~~d~~~~~kfD~Ii~NP  264 (524)
T d2ar0a1         243 LGNTLGSDGENLPKAHIVATNP  264 (524)
T ss_dssp             ESCTTSHHHHTSCCEEEEEECC
T ss_pred             hhhhhhhcccccccceeEEecC
Confidence            4444331    12588766554

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.24  E-value=0.077  Score=43.43  Aligned_cols=61  Identities=16%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|.+.|.   ++..|++.|. +|+.+|.+++.++.+.+.++..+. ++.++++|+.+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~   66 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSE   66 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            468899999988775   5677777787 899999999999988888876664 788999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.95  E-value=0.11  Score=42.29  Aligned_cols=61  Identities=20%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ..|+.||--|++.|.   ++..|+++|. +|+.+|.+++.++...+.+...+ .++..+.+|+.+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~-~~~~~~~~Dvs~~   68 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLG-AKVHTFVVDCSNR   68 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEEeeCCCH
Confidence            458888888988876   5777778887 89999999999988888887666 3789999999984

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.94  E-value=0.1  Score=42.73  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=50.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++++||-.|+..|.   ++..|++.|. +|+.++.++..++.+.+.....+. ++.++++|+.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~   67 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSR   67 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCH
Confidence            468999999998774   5677777887 999999999998888888777764 688999999883

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.78  E-value=0.031  Score=43.31  Aligned_cols=44  Identities=20%  Similarity=0.189  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|||. |..+..+++. |..+|+.+|.++.-++.|++
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            35688999999997 8888888887 77789999999988888877

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.66  E-value=0.028  Score=42.92  Aligned_cols=43  Identities=21%  Similarity=0.090  Sum_probs=36.1

Q ss_pred             CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|+| .|.++..+++. |. +|+++|.|+..++.+++.
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc
Confidence            568899999998 67778888776 76 899999999988888773

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.024  Score=47.63  Aligned_cols=57  Identities=16%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CCEEEEEccCcChhHHHHHhcCCC--cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~g~~--~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      +.+|+|+.||.|.+...|.+.|..  -|.++|+.+.+++..+.+.     ++..++++|+.+..
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~   60 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGIT   60 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCC
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCC
Confidence            458999999999999888777764  3679999999998888764     24556777887653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.44  E-value=0.13  Score=41.93  Aligned_cols=60  Identities=20%  Similarity=0.324  Sum_probs=49.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+...+. ++.++++|+.+
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~   68 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSS   68 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCC
Confidence            468899999988775   5677777787 899999999999888887776664 78889999987

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.30  E-value=0.11  Score=42.65  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=50.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~  225 (259)
                      ++++++|-.|++.|.   ++..|++.|. +|+.+|.+++.++.+.+.+...+..  ++.++++|+.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~   69 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTE   69 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCH
Confidence            468899999988775   5677777787 9999999999999988888766543  589999999883

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.25  E-value=0.11  Score=42.14  Aligned_cols=61  Identities=13%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +.++.+|-.|++.|.   ++..|++.|. +|+.+|.++..++.+.+.++..+. ++.++++|+.+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~   71 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKK   71 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            457888888877664   3555566676 999999999999888888776664 788999999883

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.24  E-value=0.11  Score=42.58  Aligned_cols=60  Identities=13%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|-.|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+...+  .+.++.+|+.+.
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~   66 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKD   66 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCH
Confidence            468899999988776   4566667787 89999999988887777664333  588899999874

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.12  Score=42.14  Aligned_cols=61  Identities=18%  Similarity=0.173  Sum_probs=48.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..+. ++.++++|+.+.
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~   72 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSE   72 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCH
Confidence            468889988877665   4556666787 899999999999888888877664 788899999883

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.08  E-value=0.049  Score=42.10  Aligned_cols=44  Identities=25%  Similarity=0.364  Sum_probs=35.8

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|||. |..+..+++. |..+|+++|.+++-++.|++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            5688999999984 4456666665 767999999999999999885

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.05  E-value=0.029  Score=46.37  Aligned_cols=34  Identities=18%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcC-CCcEEEEeCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYS  196 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g-~~~V~giD~S  196 (259)
                      .+..+|+|+|||.|.++..++.+. ...|.|+++-
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            457799999999999999999873 2367787773

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.87  E-value=0.15  Score=41.60  Aligned_cols=62  Identities=13%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+...+..  ++.++++|+.+.
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~   69 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTD   69 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCH
Confidence            357888888888776   4667777787 8999999999998888877766543  589999999873

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.85  E-value=0.15  Score=41.70  Aligned_cols=60  Identities=23%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.++.++..++.+.+.+...+. ++.++.+|+.+
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~   68 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASL   68 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCC
Confidence            468899999988876   6777777887 899999999998888887766654 78999999987

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.76  E-value=0.16  Score=41.75  Aligned_cols=62  Identities=23%  Similarity=0.304  Sum_probs=50.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCc--ceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~--~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+...+..  ++.++++|+.+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~   68 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEA   68 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCH
Confidence            358899999988775   5677777787 8999999999998888887776543  589999999884

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.50  E-value=0.11  Score=43.34  Aligned_cols=57  Identities=14%  Similarity=0.080  Sum_probs=45.8

Q ss_pred             CCCCEEEEEccCcChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ..+.+|||+-||.|.+...|.+.|+.-|.++|+.+.+++..+.|....       .++|+.+..
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~   65 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVN   65 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCc
Confidence            357899999999999999999989866778999999999988876321       246776643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.50  E-value=0.15  Score=41.97  Aligned_cols=61  Identities=15%  Similarity=0.192  Sum_probs=46.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH-hcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~-~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.++..++.+.+.+. ..+ .++.++.+|+.+.
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~   87 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDP   87 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccCh
Confidence            578999999988773   5667777787 99999999988776665543 334 3688899999873

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.16  E-value=0.24  Score=40.08  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++.+|--|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..+. ++.++++|+.+.
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~   63 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSV   63 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCH
Confidence            4566777877665   4566777787 899999999999988888777664 789999999884

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.09  E-value=0.2  Score=40.69  Aligned_cols=61  Identities=18%  Similarity=0.178  Sum_probs=47.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHh-HhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~-~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|. +|+.+|.+++.++.+.+.+ +..+. ++.++.+|+.+.
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~   67 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNY   67 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCH
Confidence            468899999988775   5677778887 8999999988876665544 44453 688899999873

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.07  E-value=0.075  Score=40.86  Aligned_cols=44  Identities=23%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            35788999999985 4455556654 87799999999999999987

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.04  E-value=0.12  Score=39.23  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|||. |..+..+++. |..+|+++|.++.-++.|++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            4678999999984 4455666655 77789999999999998876

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.01  E-value=0.26  Score=40.09  Aligned_cols=62  Identities=23%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.+++.++.+.+.....+. .++.++++|+.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~   67 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDE   67 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCH
Confidence            357899999988876   5778888887 899999999988887776654432 3688899999884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.87  E-value=0.13  Score=38.80  Aligned_cols=43  Identities=26%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+||| .|.++..+++. |. +|+++|.++.-++.|++.
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc
Confidence            467899999998 56677777776 65 999999999999988873

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=91.81  E-value=0.032  Score=46.11  Aligned_cols=62  Identities=18%  Similarity=0.104  Sum_probs=48.3

Q ss_pred             CCCEEEEEccCcChhHHHHHhcCC-----------------------------------------CcEEEEeCCHHHHHH
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQGF-----------------------------------------SDLTGVDYSEDAINL  202 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~g~-----------------------------------------~~V~giD~S~~~i~~  202 (259)
                      .+..+||..||+|++++..+-...                                         ..++|.|+.+.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            345799999999999987765210                                         136789999999998


Q ss_pred             H---HHHhHhcCCcc-eEEEEecccCC
Q 025035          203 A---QSLANRDGFSC-IKFLVMNISVQ  225 (259)
Q Consensus       203 a---~~~~~~~~l~~-i~~i~~D~~~~  225 (259)
                      |   ++|++..|+.. |++.+.|+.+.
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~  156 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDP  156 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCG
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhcc
Confidence            8   46888888865 99999998763

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.47  E-value=0.22  Score=43.44  Aligned_cols=50  Identities=18%  Similarity=0.098  Sum_probs=41.9

Q ss_pred             CCCCEEEEEccCcChhHHHHHhc---CCCcEEEEeCCHHHHHHHHHHhHhcCC
Q 025035          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF  212 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~~~~~la~~---g~~~V~giD~S~~~i~~a~~~~~~~~l  212 (259)
                      .++..++|||+-.|..+..+++.   ...+|+++|+++...+..+++.+.++.
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            46789999999999998877654   234899999999999999999877654

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.46  E-value=0.67  Score=39.52  Aligned_cols=78  Identities=13%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             CCEEEEEccCcChhHHHHHhc-C-------CCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCCc-ceeEEEec
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ-G-------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQIL-TYFICKSE  235 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~-g-------~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~~-~fdvv~~~  235 (259)
                      ...|+|+|+|+|.++.-+.+. .       ..+++.+|.|+...+.-+++++.  ..+++|+. ++...+. +-.+++.+
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~--~~~i~w~~-~~~~~~~~~g~iiaNE  156 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG--IRNIHWHD-SFEDVPEGPAVILANE  156 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT--CSSEEEES-SGGGSCCSSEEEEEES
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc--cccceecc-ChhhcccCCeEEEecc
Confidence            458999999999998766553 1       12689999999876666665542  33566543 3444332 23455666


Q ss_pred             ccCcccccee
Q 025035          236 RNEHYTFDLY  245 (259)
Q Consensus       236 v~~h~~~D~i  245 (259)
                      ++.=.+.+.+
T Consensus       157 ~fDAlPv~~~  166 (365)
T d1zkda1         157 YFDVLPIHQA  166 (365)
T ss_dssp             SGGGSCCEEE
T ss_pred             cCccccceEE
Confidence            6655555554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.25  E-value=0.17  Score=36.72  Aligned_cols=50  Identities=18%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             EEEEEccCcChhHHHHHh----cCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          167 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~----~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +|+=+|+  |.++..+++    .|. .|+.+|.+++.++.+++.   .   .+.++.+|..+.
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~---~---~~~vi~Gd~~~~   55 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I---DALVINGDCTKI   55 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C---SSEEEESCTTSH
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhh---h---hhhhccCcccch
Confidence            5666665  666666665    365 899999999988877653   1   467888998873

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.21  Score=40.69  Aligned_cols=61  Identities=16%  Similarity=0.228  Sum_probs=48.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ++|+++|-.|++.|.   ++..|+++|. +|+.++.+++.++.+.+.........+.+...|..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~   75 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED   75 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhh
Confidence            468999999999886   5677777787 999999999999888776554443467888888776

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=91.10  E-value=0.22  Score=40.31  Aligned_cols=60  Identities=15%  Similarity=0.148  Sum_probs=46.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.+++.++.+.+.....  .++.++++|+.+.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   66 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDE   66 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCH
Confidence            468889988877765   4667777787 8999999998888777765432  3688999999884

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.99  E-value=0.36  Score=38.96  Aligned_cols=56  Identities=25%  Similarity=0.389  Sum_probs=44.2

Q ss_pred             EEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          168 VLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       168 VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +|--|++.|.   ++..|+++|. +|+.+|.++..++.+.+.++..+. ++.++++|+.+.
T Consensus         4 alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~   62 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDR   62 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             EEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCH
Confidence            4667777665   4566667787 899999999999888887777664 788899999884

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.33  Score=39.05  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=44.4

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|-.|++.|.   ++..|++.|. +|+.+|.++..++...+..     .++..++.|+.+.
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~   64 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDW   64 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCH
Confidence            568999999988874   5677777887 8999999998776655433     2578888998873

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.15  E-value=0.41  Score=38.92  Aligned_cols=61  Identities=18%  Similarity=0.256  Sum_probs=48.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC-HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S-~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|-.|++.|.   ++..|+++|. +|+.++.+ ++.++...+.++..+. ++.++++|+.+.
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~   80 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVV   80 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCH
Confidence            568899999988875   6777778887 89999986 5667777776666664 789999999883

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.48  Score=38.15  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=45.7

Q ss_pred             CCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc-CCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~-~l~~i~~i~~D~~~~  225 (259)
                      ++.+|--|++.|.   ++..|+++|. +|+.+|.+++.++.+.+.+... +-.++.++++|+.+.
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~   66 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQ   66 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCH
Confidence            6788888887765   4566667787 8999999998888777765433 223689999999884

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.92  E-value=0.46  Score=38.24  Aligned_cols=58  Identities=10%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.+++.++...+...    .++.++++|+.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~   64 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQP   64 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCH
Confidence            468899999988875   5677777788 89999999987766655442    2688899999884

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=0.42  Score=38.66  Aligned_cols=57  Identities=14%  Similarity=0.250  Sum_probs=44.2

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.+++.++...+..     .++.++++|+.+.
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~   63 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQE   63 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCH
Confidence            468899999988775   5666777787 8999999998877665532     3678899999873

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.74  E-value=0.27  Score=39.82  Aligned_cols=61  Identities=16%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC-HHHHHHHHHHhHh-cCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANR-DGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S-~~~i~~a~~~~~~-~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|+++|. +|+.++.+ +..++.+.+.... .+. ++.++.+|+.+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~   67 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGV-KVLYDGADLSKG   67 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTS-CEEEECCCTTSH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCC-cEEEEECCCCCH
Confidence            357888988888776   5667777887 99999986 5666666655433 343 788999999884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.62  E-value=0.42  Score=38.55  Aligned_cols=61  Identities=21%  Similarity=0.174  Sum_probs=47.4

Q ss_pred             CCCCEEEEEccCcC---hhHHHHHhcCCCcEEE-EeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTG-VDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G---~~~~~la~~g~~~V~g-iD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +.+++||-.|++.|   .++..|++.|+ +|+. ..-++..++.+.+.+...|. ++.++.+|+.+.
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~   68 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKP   68 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCH
Confidence            46889998887766   46677777788 6775 46778888888888887775 788999999873

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=89.53  E-value=0.44  Score=38.72  Aligned_cols=61  Identities=18%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCC-HHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S-~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.++.+ +..++...+.++..+. ++.++++|+.+.
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~   69 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVE   69 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence            468889988888775   5667777787 89999987 4567777776666664 688899999884

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.49  E-value=0.18  Score=40.97  Aligned_cols=61  Identities=11%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHh-HhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~-~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+ +..+. ++.++++|+.+.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~   71 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNT   71 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCH
Confidence            468899999977765   5667777787 8999999876665554443 44453 688999999884

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.41  E-value=0.3  Score=37.00  Aligned_cols=44  Identities=32%  Similarity=0.367  Sum_probs=34.1

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|||. |..+..+++. |...|+++|.++.-++.+++.
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            5688999999984 3455566655 777889999999988888773

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.94  E-value=0.75  Score=38.04  Aligned_cols=62  Identities=15%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhc----CCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----GFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~----~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+.+...    .-.++.++.+|+.+.
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNE   78 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCH
Confidence            468899999988776   4566677787 8999999998887776655432    113688999999884

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=88.91  E-value=0.23  Score=37.44  Aligned_cols=45  Identities=27%  Similarity=0.286  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       162 ~~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      ..++.+||-+||| .|.++..+++. |...|+++|.++.-++.+++.
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            3568899999987 34455656665 877999999999888888874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.78  E-value=0.53  Score=37.72  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=42.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|-.|++.|.   ++..|++.|. +|+.+|.++..++...+..     ..+.+++.|+.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~   62 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDW   62 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCH
Confidence            468899999988775   5666777787 9999999987766554432     2577888999873

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.66  E-value=0.43  Score=35.92  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=33.7

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+|||. |..+..+++. |...|+++|.++.-++.+++
T Consensus        31 ~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~   75 (172)
T d1h2ba2          31 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER   75 (172)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh
Confidence            4678999999985 4455666654 77799999999988888876

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=88.50  E-value=0.4  Score=36.84  Aligned_cols=69  Identities=13%  Similarity=0.119  Sum_probs=47.0

Q ss_pred             CCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC---CcceeEEEeccc
Q 025035          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ---ILTYFICKSERN  237 (259)
Q Consensus       164 ~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~---~~~fdvv~~~v~  237 (259)
                      ++.+|+-||+| .|..+...+.+ |. +|+.+|.+...++..+.....    ++.+...+-..+   ....|++...++
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEeee
Confidence            57899999999 57778887777 65 999999999999888775532    344444333222   115565555444

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.25  E-value=0.53  Score=37.69  Aligned_cols=56  Identities=25%  Similarity=0.348  Sum_probs=42.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|+ +|+.+|.++..++.+.+..      +++++++|+.+.
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~   61 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADP   61 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCH
Confidence            358889999988775   4666667787 8999999998777665422      467888999874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.24  E-value=0.39  Score=35.78  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-+||| .|..+..+++. |. +|+++|.++.-++.+++
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARK   69 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhc
Confidence            568899999998 46666777766 64 99999999999888876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.23  E-value=0.63  Score=37.28  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|++.|. +|+.+|.+++.++...+...    .++.++++|+.+.
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~   62 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG----ANGKGLMLNVTDP   62 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCH
Confidence            357888888887775   5667777787 99999999988777665543    2577888999873

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.19  E-value=0.6  Score=37.76  Aligned_cols=58  Identities=16%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|+ +|+.+|.+++.++...+.   .+ .++.++++|+.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dv~~~   63 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARE---LG-DAARYQHLDVTIE   63 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT---TG-GGEEEEECCTTCH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHH---hC-CceEEEEcccCCH
Confidence            468899999988874   5777777887 899999998766554432   23 3689999999873

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=87.53  E-value=0.64  Score=35.64  Aligned_cols=60  Identities=8%  Similarity=0.000  Sum_probs=43.2

Q ss_pred             CCCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          162 YLSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      ..++++||-.|++.|.   ++..|+++|. +|+.++.+++.++...+......  ++.+...|+.+
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~   82 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETAD   82 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhccc
Confidence            3578999999977665   4666777787 99999999988877777665432  34455566554

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.41  E-value=0.57  Score=37.79  Aligned_cols=58  Identities=16%  Similarity=0.267  Sum_probs=44.1

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|. +|+.+|.+++.++.+.+..   + .++.++.+|+.+.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~-~~~~~~~~Dvt~~   63 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G-PAACAIALDVTDQ   63 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEeeCCCH
Confidence            357889999988775   5677777787 8999999987766555433   3 3688899999884

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=87.37  E-value=0.89  Score=36.98  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|+ +|+.+|.+++.++...+..   + .++..+++|+.+.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~-~~~~~~~~Dv~~~   63 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G-DNVLGIVGDVRSL   63 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeeEEecccccH
Confidence            358899999987765   4666677787 9999999998776555433   2 2688899999884

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.35  E-value=0.3  Score=36.74  Aligned_cols=44  Identities=16%  Similarity=0.069  Sum_probs=33.3

Q ss_pred             CCCCCEEEEEccCcCh-hHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          162 YLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       162 ~~~~~~VLDiGcG~G~-~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      ..++.+||-+|||.+. .+..+++. +..+|+++|.++.-++.+++
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            3568899999999744 34434443 66699999999988888876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.13  E-value=0.37  Score=36.37  Aligned_cols=42  Identities=24%  Similarity=0.372  Sum_probs=34.0

Q ss_pred             CCCCEEEEEcc--CcChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGc--G~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-.|+  |.|..+..+++. |. +|++++-|++.++.+++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc
Confidence            46889999996  467788888877 66 89999999987777765

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=86.09  E-value=0.81  Score=36.49  Aligned_cols=58  Identities=24%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|-.|++.|.   ++..|+++|+ +|+.++.+...++...+   ..+ .++.++++|+.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~---~~~-~~~~~~~~Dls~~   63 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVA---ALE-AEAIAVVADVSDP   63 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH---TCC-SSEEEEECCTTSH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH---HcC-CceEEEEecCCCH
Confidence            468899999988765   5666777787 99999999976654433   334 3688899999874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.92  E-value=0.53  Score=35.10  Aligned_cols=40  Identities=33%  Similarity=0.571  Sum_probs=31.0

Q ss_pred             EEEEEccCc--ChhHHHHHhcCCC-cEEEEeCCHHHHHHHHHH
Q 025035          167 SVLDIGTGN--GLLLQELSKQGFS-DLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       167 ~VLDiGcG~--G~~~~~la~~g~~-~V~giD~S~~~i~~a~~~  206 (259)
                      +|+=||||.  |.++..|.+.|.. +|+|+|.++..++.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            588899983  3356667666653 899999999999988874

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=0.59  Score=36.19  Aligned_cols=42  Identities=24%  Similarity=0.198  Sum_probs=33.0

Q ss_pred             CEEEEEccCc--ChhHHHHHhcCCCcEEEEeCCHHHHHHHHHHhH
Q 025035          166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (259)
Q Consensus       166 ~~VLDiGcG~--G~~~~~la~~g~~~V~giD~S~~~i~~a~~~~~  208 (259)
                      ++|--||+|.  +.++..++..|. +|+.+|.+++.++.++++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHH
Confidence            4788999983  235666677787 99999999999998877654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=85.76  E-value=0.82  Score=36.59  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=42.3

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++.+|--|++.|.   ++..|++.|+ +|+.+|.++.  +.+.+..+..+. ++.++++|+.+.
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g~-~~~~~~~Dvs~~   64 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLGR-RVLTVKCDVSQP   64 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcCC-cEEEEEeeCCCH
Confidence            358889988887764   5667777787 8999998763  233344444553 688999999884

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.27  E-value=0.56  Score=34.86  Aligned_cols=38  Identities=24%  Similarity=0.351  Sum_probs=30.1

Q ss_pred             EEEEEccC--cChhHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025035          167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       167 ~VLDiGcG--~G~~~~~la~~g~~~V~giD~S~~~i~~a~~  205 (259)
                      +|.=||+|  .+.++..|.+.|. +|+++|.++..++.+++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHH
Confidence            57778887  4456677777787 99999999988887765

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=85.20  E-value=0.73  Score=37.09  Aligned_cols=58  Identities=21%  Similarity=0.219  Sum_probs=43.5

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|. +|+.+|.++..++...+..   + .+..++++|+.+.
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~~   64 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSE   64 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CCeEEEEeecCCH
Confidence            468889988877774   5666777787 8999999998877665543   3 2577888898873

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.18  E-value=1.3  Score=35.26  Aligned_cols=60  Identities=20%  Similarity=0.219  Sum_probs=45.6

Q ss_pred             CCCCEEEEEccCc--C--h-hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGN--G--L-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~--G--~-~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|-.|+++  |  . ++..|++.|. +|+.++.++...+.+.+.....+  +..++++|+.+.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~   70 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQD   70 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC--cccccccccCCH
Confidence            5789999999653  4  3 6777888887 89999999887777776655443  567888998873

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=84.53  E-value=0.67  Score=34.56  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=34.0

Q ss_pred             CCCCEEEEEccC--cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG--~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+|||  .|..+..+++. |..+|+++|.++.-++.+++.
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            467899999973  55556655554 767999999999888888763

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=84.35  E-value=0.57  Score=35.06  Aligned_cols=43  Identities=23%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             CCCCEEEEEccC-cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG-~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-+||| .|.++..+++. |. +++++|.++.-++.+++.
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc
Confidence            568899999997 46677777776 65 788999998877777663

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=84.31  E-value=0.44  Score=34.13  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             cCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCCC
Q 025035          173 TGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQI  226 (259)
Q Consensus       173 cG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~~  226 (259)
                      ||.|.++..+++.    |. .|+.+|.+++.++.++.    .+   ...+.+|..+..
T Consensus         6 iG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~~---~~~~~gd~~~~~   55 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----YA---THAVIANATEEN   55 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----TC---SEEEECCTTCTT
T ss_pred             ECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----hC---Ccceeeecccch
Confidence            3556666666554    66 89999999998887653    22   356778887753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.52  E-value=1  Score=33.14  Aligned_cols=42  Identities=24%  Similarity=0.391  Sum_probs=32.8

Q ss_pred             CCCCEEEEEccCc-ChhHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025035          163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (259)
Q Consensus       163 ~~~~~VLDiGcG~-G~~~~~la~~-g~~~V~giD~S~~~i~~a~~  205 (259)
                      .++.+||-.|||. |..+..+++. |. +|++++.++.-++.+++
T Consensus        26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          26 KPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             CTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh
Confidence            4688999999985 4455566665 55 89999999999888876

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=1.1  Score=35.58  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             CCCCEEEEEccCc--Ch---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccC
Q 025035          163 LSSWSVLDIGTGN--GL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISV  224 (259)
Q Consensus       163 ~~~~~VLDiGcG~--G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~  224 (259)
                      +++++||-.|+++  |.   ++..|++.|. +|+.++.++...+.+.+.....+  +......|..+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~   66 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLG--SDIVLQCDVAE   66 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTT--CCCEEECCTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcC--Ccceeecccch
Confidence            4688999998866  63   6788888887 89999999888887777666554  34555555544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=83.28  E-value=1.2  Score=35.71  Aligned_cols=55  Identities=16%  Similarity=0.277  Sum_probs=40.8

Q ss_pred             CCCCEEEEEccCcCh---hHHHHHhcCCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       163 ~~~~~VLDiGcG~G~---~~~~la~~g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++++|--|++.|.   ++..|+++|. +|+.+|.+++..+.+++    .   +..+++.|+.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~----~---~~~~~~~Dv~~~   60 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEA----I---GGAFFQVDLEDE   60 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHH----H---TCEEEECCTTCH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----c---CCeEEEEeCCCH
Confidence            468899999977775   4666777787 99999999877665543    1   346778899874

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.01  E-value=0.77  Score=34.40  Aligned_cols=43  Identities=19%  Similarity=0.109  Sum_probs=35.1

Q ss_pred             CCCCEEEEEccC--cChhHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025035          163 LSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (259)
Q Consensus       163 ~~~~~VLDiGcG--~G~~~~~la~~-g~~~V~giD~S~~~i~~a~~~  206 (259)
                      .++.+||-.|+|  .|..+..+++. |. +|++++.|+.-++.+++.
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc
Confidence            467899998666  57788888887 65 999999999998888763

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=81.88  E-value=1.8  Score=34.23  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=43.6

Q ss_pred             EEEEccCcCh---hHHHHHhcCCC------cEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          168 VLDIGTGNGL---LLQELSKQGFS------DLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       168 VLDiGcG~G~---~~~~la~~g~~------~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ||--|++.|.   ++..|+++|..      .|+.++.++..++...+.++..|. ++.++.+|+.+.
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dvt~~   69 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA-LTDTITADISDM   69 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC-EEEEEECCTTSH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCH
Confidence            5666777765   45666777873      299999999999888887776664 788999999884

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=80.42  E-value=0.54  Score=38.96  Aligned_cols=53  Identities=25%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             EEEEEccCcChhHHHHHhc----CCCcEEEEeC----CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          167 SVLDIGTGNGLLLQELSKQ----GFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       167 ~VLDiGcG~G~~~~~la~~----g~~~V~giD~----S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +||-.| |+|.++..|++.    |. +|+++|.    ....+......    ...+++++++|+.+.
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~d~   62 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERL----GGKHPTFVEGDIRNE   62 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHH----HTSCCEEEECCTTCH
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhh----cCCCCEEEEeecCCH
Confidence            577665 889988877664    66 8999985    22233322221    113799999999884

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.37  E-value=1.4  Score=36.13  Aligned_cols=59  Identities=19%  Similarity=0.216  Sum_probs=41.0

Q ss_pred             CCEEEEEccCcChhHHHHHhc----CCCcEEEEeC----CHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       165 ~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~----S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      +++||-. .|+|.++..|+++    |. +|+|+|.    +...+...+.........+++++.+|..+.
T Consensus        16 ~k~iLVT-G~tGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~   82 (341)
T d1sb8a_          16 PKVWLIT-GVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNL   82 (341)
T ss_dssp             CCEEEEE-TTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSH
T ss_pred             CCEEEEe-cCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccc
Confidence            5677777 5899988877664    77 8999995    444555555543333334789999999874

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.22  E-value=1.9  Score=34.36  Aligned_cols=61  Identities=11%  Similarity=0.116  Sum_probs=42.1

Q ss_pred             CCCEEEEEccCcCh---hHHHHHh---cCCCcEEEEeCCHHHHHHHHHHhHhcCC-cceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGL---LLQELSK---QGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~---~~~~la~---~g~~~V~giD~S~~~i~~a~~~~~~~~l-~~i~~i~~D~~~~  225 (259)
                      .++.+|--|++.|.   ++..|++   .|. +|+.++.++..++.+.+.+...+. .++.++.+|+.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            35555655666655   3444554   355 999999999999888776654432 3689999999883

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.08  E-value=0.55  Score=38.79  Aligned_cols=58  Identities=17%  Similarity=0.065  Sum_probs=38.4

Q ss_pred             CCCEEEEEccCcChhHHHHHhc----CCCcEEEEeCCHHHHHHHHHHhHhcCCcceEEEEecccCC
Q 025035          164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVMNISVQ  225 (259)
Q Consensus       164 ~~~~VLDiGcG~G~~~~~la~~----g~~~V~giD~S~~~i~~a~~~~~~~~l~~i~~i~~D~~~~  225 (259)
                      ++++||-.| |+|.++..+++.    |. +|+++|.+........+...  ...+++++.+|+.+.
T Consensus         7 ~~KkILVTG-~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~--~~~~i~~~~~Dl~d~   68 (356)
T d1rkxa_           7 QGKRVFVTG-HTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETAR--VADGMQSEIGDIRDQ   68 (356)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTT--TTTTSEEEECCTTCH
T ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhh--cccCCeEEEeeccCh
Confidence            588999986 668877766654    77 89999986533222212111  113699999999874