Citrus Sinensis ID: 025056

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
cccHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEccccccccccccccccEEEEEEcccccccccccccEEccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccc
ccccHHHHHHHHHHHHHHccHHHEEcccccccccccccEEEEEEEcccccccccccccEEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEccccccccccccEEcccccccHHHHHccccccccccHHHHHHHHHHHHccccccccccccc
MTDHVQEQEMEIEALEAILMDEFkeihsgesglntsnqcfqvtlspqddeadestmppVELALIFShtekypdeppllnvkslrgiqaGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSErysqdagidntgeeelekdevivphgepvtvETFLAWRERFEAELALERAKLmpesaltapkekkltgrqwfesgratAVSQKGavtvnevsddeddedidfddddfedDEVDMLEHYLAeksdssthssrqps
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGeeelekdevivphgepvtVETFLAWRERFEAELALERAKlmpesaltapkekkltgrqwfesgratavsqkgavtvnevsddeddedidFDDDDFEDDEVDMLEHYlaeksdssthssrqps
MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFlawrerfeaelaleraklMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSddeddedidfddddfeddevdMLEHYLAEKSDSSTHSSRQPS
****************AILM****************************************LALIFSHTE*******LLNVKSLRGIQAGDLKILKEKL*****ENLGMAMIYTLVTSAKEWLSERY*****************EVIVPHGEPVTVETFLAWRERFEAELALE**************************************************************************************
**DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY****************************VETFLAWRE*******************************WFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEH*****************
********EMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLS**********MPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLA**************
*TDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALT******LTGRQWFESGR*************************FDDDDFEDDEVDMLEHYLAEK************
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MTDHxxxxxxxxxxxxxxxxxxxxxIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLEHYLAEKSDSSTHSSRQPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q9CQK7243 RWD domain-containing pro yes no 0.717 0.761 0.376 3e-23
Q99ND9243 RWD domain-containing pro yes no 0.717 0.761 0.371 7e-23
Q9H446243 RWD domain-containing pro yes no 0.717 0.761 0.371 2e-22
O94721215 RWD domain-containing pro yes no 0.701 0.841 0.319 2e-11
Q03768265 Protein GIR2 OS=Saccharom yes no 0.728 0.709 0.289 2e-10
Q9QZR0 456 E3 ubiquitin-protein liga no no 0.414 0.234 0.300 8e-06
Q9HGN1 1576 Serine/threonine-protein no no 0.515 0.084 0.255 1e-05
Q9P2K8 1649 Eukaryotic translation in no no 0.449 0.070 0.285 2e-05
Q5E9N3 458 E3 ubiquitin-protein liga no no 0.422 0.237 0.280 2e-05
Q96BH1 459 E3 ubiquitin-protein liga no no 0.422 0.237 0.298 3e-05
>sp|Q9CQK7|RWDD1_MOUSE RWD domain-containing protein 1 OS=Mus musculus GN=Rwdd1 PE=1 SV=1 Back     alignment and function desciption
 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 115/202 (56%), Gaps = 17/202 (8%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ +EQ  E+EALE+I  D F       + L+ S   F +T++ +  E DE+    V+
Sbjct: 1   MTDYGEEQRNELEALESIYPDSF-------TVLSESPPSFTITVTSEAGENDET----VQ 49

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E
Sbjct: 50  TTLKFTYSEKYPDETPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQE 109

Query: 121 WLSERYSQ----DAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKL 176
            L+E   Q            E+E E+ E  + HG PVT+E FL+W+ +F+AEL   + K 
Sbjct: 110 KLNEIVDQIKTRREEEKKQKEKEAEEAEKKLFHGTPVTIENFLSWKAKFDAELLEIKKKR 169

Query: 177 MPESALTAPKEKKLTGRQWFES 198
           M E       + KL+G+Q FE+
Sbjct: 170 MKEEEQAG--KNKLSGKQLFET 189
Protects DRG2 from proteolytic degradation.
Mus musculus (taxid: 10090)
>sp|Q99ND9|RWDD1_RAT RWD domain-containing protein 1 OS=Rattus norvegicus GN=Rwdd1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H446|RWDD1_HUMAN RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1 Back     alignment and function description
>sp|O94721|YCF9_SCHPO RWD domain-containing protein C1393.09c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1393.09c PE=4 SV=1 Back     alignment and function description
>sp|Q03768|GIR2_YEAST Protein GIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9QZR0|RNF25_MOUSE E3 ubiquitin-protein ligase RNF25 OS=Mus musculus GN=Rnf25 PE=1 SV=2 Back     alignment and function description
>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcn2 PE=2 SV=2 Back     alignment and function description
>sp|Q9P2K8|E2AK4_HUMAN Eukaryotic translation initiation factor 2-alpha kinase 4 OS=Homo sapiens GN=EIF2AK4 PE=1 SV=3 Back     alignment and function description
>sp|Q5E9N3|RNF25_BOVIN E3 ubiquitin-protein ligase RNF25 OS=Bos taurus GN=RNF25 PE=2 SV=1 Back     alignment and function description
>sp|Q96BH1|RNF25_HUMAN E3 ubiquitin-protein ligase RNF25 OS=Homo sapiens GN=RNF25 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
255549664253 rwd domain-containing protein, putative 0.972 0.992 0.816 1e-104
224128650252 predicted protein [Populus trichocarpa] 0.976 1.0 0.813 1e-102
225442349255 PREDICTED: RWD domain-containing protein 0.980 0.992 0.839 1e-102
224059188252 predicted protein [Populus trichocarpa] 0.976 1.0 0.790 1e-97
297743115246 unnamed protein product [Vitis vinifera] 0.945 0.991 0.838 8e-97
449447836255 PREDICTED: RWD domain-containing protein 0.984 0.996 0.755 3e-96
363807786253 uncharacterized protein LOC100813322 [Gl 0.980 1.0 0.705 8e-92
356526049253 PREDICTED: RWD domain-containing protein 0.980 1.0 0.693 1e-91
297852898252 RWD domain-containing protein [Arabidops 0.972 0.996 0.764 2e-91
15218023252 ubiquitin-conjugating enzyme-like protei 0.968 0.992 0.746 2e-91
>gi|255549664|ref|XP_002515883.1| rwd domain-containing protein, putative [Ricinus communis] gi|223544788|gb|EEF46303.1| rwd domain-containing protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/256 (81%), Positives = 233/256 (91%), Gaps = 5/256 (1%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ QEQEMEIEALEAILMDEFKEIHS ESGLNTSN+CF +T+SPQDD+A++ST  PV+
Sbjct: 1   MTDYGQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFHITISPQDDDAEDSTDIPVQ 60

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           LALIFSHTEKYPDEPPLL+VKS+RGIQ GDLK+LKEKLE+EASENLGMAM+YTLVTSAKE
Sbjct: 61  LALIFSHTEKYPDEPPLLSVKSIRGIQVGDLKVLKEKLEEEASENLGMAMVYTLVTSAKE 120

Query: 121 WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFLAWRERFEAELALERAKLMPES 180
           WLSE+Y QDA  +   +EE  KDEVIVPHGEPVT++TFLAWRERFEAELALERAKLMPES
Sbjct: 121 WLSEKYGQDASNETIEDEEAAKDEVIVPHGEPVTIDTFLAWRERFEAELALERAKLMPES 180

Query: 181 ALTAPKEKKLTGRQWFESGRATAVSQKGAVTVNEVSDDEDDEDIDFDDDDFEDDEVDMLE 240
            LTAPKEKK++GRQWFESGRA     KGA TVNE SD+ED+E+IDFDDDDFEDDE DMLE
Sbjct: 181 VLTAPKEKKISGRQWFESGRA-----KGAATVNEESDEEDEEEIDFDDDDFEDDEEDMLE 235

Query: 241 HYLAEKSDSSTHSSRQ 256
           HYLAEKSDSSTHSSR+
Sbjct: 236 HYLAEKSDSSTHSSRR 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128650|ref|XP_002329056.1| predicted protein [Populus trichocarpa] gi|222839727|gb|EEE78050.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225442349|ref|XP_002281163.1| PREDICTED: RWD domain-containing protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224059188|ref|XP_002299758.1| predicted protein [Populus trichocarpa] gi|222847016|gb|EEE84563.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297743115|emb|CBI35982.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449447836|ref|XP_004141673.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] gi|449480599|ref|XP_004155941.1| PREDICTED: RWD domain-containing protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|363807786|ref|NP_001241922.1| uncharacterized protein LOC100813322 [Glycine max] gi|255641328|gb|ACU20941.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356526049|ref|XP_003531632.1| PREDICTED: RWD domain-containing protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297852898|ref|XP_002894330.1| RWD domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340172|gb|EFH70589.1| RWD domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218023|ref|NP_175584.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] gi|12321663|gb|AAG50865.1|AC025294_3 unknown protein [Arabidopsis thaliana] gi|19698889|gb|AAL91180.1| unknown protein [Arabidopsis thaliana] gi|23198350|gb|AAN15702.1| unknown protein [Arabidopsis thaliana] gi|332194587|gb|AEE32708.1| ubiquitin-conjugating enzyme-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2017532252 AT1G51730 [Arabidopsis thalian 0.968 0.992 0.621 2.4e-76
MGI|MGI:1913771243 Rwdd1 "RWD domain containing 1 0.717 0.761 0.341 1.3e-20
ZFIN|ZDB-GENE-040718-270240 rwdd1 "RWD domain containing 1 0.717 0.770 0.346 1.7e-20
UNIPROTKB|Q9H446243 RWDD1 "RWD domain-containing p 0.717 0.761 0.336 3.5e-20
WB|WBGene00012037240 T26E3.4 [Caenorhabditis elegan 0.713 0.766 0.296 2.4e-12
UNIPROTKB|G4MRT5230 MGG_04566 "RWD domain-containi 0.705 0.791 0.295 2.2e-10
POMBASE|SPCC1393.09c215 SPCC1393.09c "RWD domain prote 0.546 0.655 0.357 2.7e-09
ASPGD|ASPL0000014519236 AN3646 [Emericella nidulans (t 0.728 0.796 0.281 5.8e-08
RGD|1311557 454 Rnf25 "ring finger protein 25" 0.418 0.237 0.298 5.8e-06
MGI|MGI:1890215 456 Rnf25 "ring finger protein 25" 0.418 0.236 0.298 7.7e-06
TAIR|locus:2017532 AT1G51730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
 Identities = 159/256 (62%), Positives = 181/256 (70%)

Query:     1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
             MT++ QEQEMEIEALEAILMDEFKEIHS ESGLNTSN+CFQ+T++PQDDE +E  +PPV+
Sbjct:     1 MTEYKQEQEMEIEALEAILMDEFKEIHSSESGLNTSNRCFQITVTPQDDELEELAIPPVQ 60

Query:    61 LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             LAL+FSHTE YPDE PLL+VKS+RGI   DL ILKEKLEQEASENLGMAMIYTLV+SAK+
Sbjct:    61 LALVFSHTENYPDEAPLLDVKSIRGIHVSDLTILKEKLEQEASENLGMAMIYTLVSSAKD 120

Query:   121 WLSERYSQDAGIDNTGEEELEKDEVIVPHGEPVTVETFXXXXXXXXXXXXXXXXXXMPES 180
             WLSE Y QD   +    E  ++DEVIVPHGEPVT+ETF                  MPES
Sbjct:   121 WLSEHYGQDDAAEFAEVEAAKEDEVIVPHGEPVTLETFLAWRERYEAELALERAKLMPES 180

Query:   181 ALTAPKEKKLTGRQWFESGRATAVSQKGAVTV-NEVSXXXXXXXXXXXXXXXXXXXXXML 239
             ALTAPKEKKLTGRQWFESGR      +G V + +E                       ML
Sbjct:   181 ALTAPKEKKLTGRQWFESGRG-----RGTVVIADEEDEEEDEEDIDFEDEDFEDDEEDML 235

Query:   240 EHYLAEKSDSSTHSSR 255
             EHYLAEKSDSS   +R
Sbjct:   236 EHYLAEKSDSSAPPTR 251
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
MGI|MGI:1913771 Rwdd1 "RWD domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-270 rwdd1 "RWD domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H446 RWDD1 "RWD domain-containing protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00012037 T26E3.4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|G4MRT5 MGG_04566 "RWD domain-containing protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
POMBASE|SPCC1393.09c SPCC1393.09c "RWD domain protein, implicated in translation" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ASPGD|ASPL0000014519 AN3646 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
RGD|1311557 Rnf25 "ring finger protein 25" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1890215 Rnf25 "ring finger protein 25" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
pfam05773113 pfam05773, RWD, RWD domain 2e-25
smart00591107 smart00591, RWD, domain in RING finger and WD repe 3e-20
>gnl|CDD|218742 pfam05773, RWD, RWD domain Back     alignment and domain information 
 Score = 96.2 bits (240), Expect = 2e-25
 Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 7/120 (5%)

Query: 3   DHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELA 62
           +  + QE E+EALE+I  DEF++         +S   F + L     EA+ S +  + L 
Sbjct: 1   ESKELQEEELEALESIYPDEFEDE-----VKESSPPTFTIKLKLLTSEAESSPLVSLVL- 54

Query: 63  LIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWL 122
             F+  E YPDEPP +++ S   ++  D   L ++LE+ A ENLG  MI+ L+   +E L
Sbjct: 55  -TFTLPEDYPDEPPKISLSSPWLLRDQDKLQLLKELEELAEENLGEVMIFELIEWLQENL 113

This domain was identified in WD40 repeat proteins and Ring finger domain proteins. The function of this domain is unknown. GCN2 is the alpha-subunit of the only translation initiation factor (eIF2 alpha) kinase that appears in all eukaryotes. Its function requires an interaction with GCN1 via the domain at its N-terminus, which is termed the RWD domain after three major RWD-containing proteins: RING finger-containing proteins, WD-repeat-containing proteins, and yeast DEAD (DEXD)-like helicases. The structure forms an alpha + beta sandwich fold consisting of two layers: a four-stranded antiparallel beta-sheet, and three side-by-side alpha-helices. Length = 113
>gnl|CDD|214735 smart00591, RWD, domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
KOG4018215 consensus Uncharacterized conserved protein, conta 100.0
smart00591107 RWD domain in RING finger and WD repeat containing 99.87
PF05773113 RWD: RWD domain; InterPro: IPR006575 The RWD eukar 99.86
KOG4445 368 consensus Uncharacterized conserved protein, conta 99.47
KOG1035 1351 consensus eIF-2alpha kinase GCN2 [Translation, rib 99.04
KOG1814 445 consensus Predicted E3 ubiquitin ligase [Posttrans 98.95
KOG1763343 consensus Uncharacterized conserved protein, conta 98.42
KOG0309 1081 consensus Conserved WD40 repeat-containing protein 96.28
COG5252299 Uncharacterized conserved protein, contains CCCH-t 95.6
PTZ00390152 ubiquitin-conjugating enzyme; Provisional 93.92
PLN00172147 ubiquitin conjugating enzyme; Provisional 92.73
COG5078153 Ubiquitin-protein ligase [Posttranslational modifi 92.49
KOG0416189 consensus Ubiquitin-protein ligase [Posttranslatio 92.33
cd00195141 UBCc Ubiquitin-conjugating enzyme E2, catalytic (U 92.32
KOG0417148 consensus Ubiquitin-protein ligase [Posttranslatio 91.67
PF00179140 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP 91.43
smart00212145 UBCc Ubiquitin-conjugating enzyme E2, catalytic do 91.37
KOG0420184 consensus Ubiquitin-protein ligase [Posttranslatio 90.9
KOG0419152 consensus Ubiquitin-protein ligase [Posttranslatio 90.85
KOG0418200 consensus Ubiquitin-protein ligase [Posttranslatio 86.2
KOG0421175 consensus Ubiquitin-protein ligase [Posttranslatio 82.52
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information 
Probab=100.00  E-value=2.4e-44  Score=307.87  Aligned_cols=192  Identities=45%  Similarity=0.635  Sum_probs=162.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEE
Q 025056            1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV   80 (258)
Q Consensus         1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l   80 (258)
                      |+.| |+|++|+|||+|||||+|..+...      .++.|+|.|....+..++   +...+.|.|++|++||+++|.+.+
T Consensus         1 Ms~~-EeQe~E~EaLeSIY~de~~~i~~~------~~~~f~v~iq~e~~e~d~---~~~~~~l~~s~tEnYPDe~Pli~~   70 (215)
T KOG4018|consen    1 MSQY-EEQEEELEALESIYPDEFKHINSE------DPPIFEVTIQYEEGENDE---PKGSFILVFSLTENYPDEAPLIEA   70 (215)
T ss_pred             CCcH-HHHHHHHHHHHHhccchhhhhhcc------CCccceeeeecccccCCC---ccccEEEEEEccCCCCCCCcceec
Confidence            6666 999999999999999999655543      245599999887654322   223899999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhccccC--CCccchhhhhhcccCCCCCcccHHHH
Q 025056           81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAGI--DNTGEEELEKDEVIVPHGEPVTVETF  158 (258)
Q Consensus        81 ~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~~~~~~~--~e~~~~~~e~ee~~~~~gt~vT~E~F  158 (258)
                      ..+.++....+..|+..|+..+++||||+|||+||+.+|+||.+++++....  .+.+.++++++++++|||||||.++|
T Consensus        71 ~~~~~~~~~~i~~i~~~l~~~aeenLGmaMiftLvss~ke~l~e~~~q~~~~e~~e~~~~~~ee~e~~kfhgt~VT~esf  150 (215)
T KOG4018|consen   71 FENENLEDAEIEGILEKLQQEAEENLGMAMIFTLVSSAKEELNEIVEQQKAAEQREQEAREAEEEERKKFHGTPVTLESF  150 (215)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCceehhhh
Confidence            9999999999999999999999999999999999999999999999887555  22345677888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCccccccCCCCCCCchhhhhhcCCccccc
Q 025056          159 LAWRERFEAELALERAKLMPESALTAPKEKKLTGRQWFESGRATAVS  205 (258)
Q Consensus       159 ~~Wk~~f~~e~~~~~~~~~~~~~~~~~~~~klTGRqlFe~~~~l~~~  205 (258)
                      ..||.+|+++++..+++.++.   .+...+++||||+|++|+.+..+
T Consensus       151 l~Wk~~fe~el~~~~~k~~~~---~~~~~~k~tgRQ~f~~d~~~~~~  194 (215)
T KOG4018|consen  151 LEWKLKFEEELLQIKAKVKKR---LQALAKKLTGRQLFETDHKGDRS  194 (215)
T ss_pred             HHHHHhhhhhhhhhhhhhhhH---HHHHhhhHHHHHHHHhcccCChh
Confidence            999999999997776665432   35567899999999999998544

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain Back     alignment and domain information
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO) Back     alignment and domain information
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown] Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only] Back     alignment and domain information
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only] Back     alignment and domain information
>PTZ00390 ubiquitin-conjugating enzyme; Provisional Back     alignment and domain information
>PLN00172 ubiquitin conjugating enzyme; Provisional Back     alignment and domain information
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain Back     alignment and domain information
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ] Back     alignment and domain information
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues Back     alignment and domain information
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
2ebm_A128 Solution Structure Of The Rwd Domain Of Human Rwd D 2e-15
1ukx_A137 Solution Structure Of The Rwd Domain Of Mouse Gcn2 8e-07
2day_A128 Solution Structure Of The Rwd Domain Of Human Ring 1e-06
2dmf_A137 An Extended Conformation Of The Rwd Domain Of Human 1e-06
2yz0_A138 Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES 1e-05
>pdb|2EBM|A Chain A, Solution Structure Of The Rwd Domain Of Human Rwd Domain Containing Protein 1 Length = 128 Back     alignment and structure 
Iteration: 1

 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 11/128 (8%)
Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           MTD+ +EQ  E+EALE+I  D F       + L+ +   F +T++ +  E DE+    V+
Sbjct: 8   MTDYGEEQRNELEALESIYPDSF-------TVLSENPPSFTITVTSEAGENDET----VQ 56
Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
             L F+++EKYPDE PL  + S   ++  D+  + + L  +A ENLGM MI+TLVT+ +E
Sbjct: 57  TTLKFTYSEKYPDEAPLYEIFSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQE 116
Query: 121 WLSERYSQ 128
            L+E   Q
Sbjct: 117 KLNEIVDQ 124
>pdb|1UKX|A Chain A, Solution Structure Of The Rwd Domain Of Mouse Gcn2 Length = 137 Back     alignment and structure
>pdb|2DAY|A Chain A, Solution Structure Of The Rwd Domain Of Human Ring Finger Protein 25 Length = 128 Back     alignment and structure
>pdb|2DMF|A Chain A, An Extended Conformation Of The Rwd Domain Of Human Ring Finger Protein 25 Length = 137 Back     alignment and structure
>pdb|2YZ0|A Chain A, Solution Structure Of RwdGI DOMAIN OF SACCHAROMYCES Cerevisiae Gcn2 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 7e-31
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 1e-26
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 3e-26
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 1e-25
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 6e-25
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 4e-07
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 4e-06
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Length = 137 Back     alignment and structure
 Score =  110 bits (277), Expect = 7e-31
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           M  + Q Q+ E++ALEAI   +F+++     G         + L PQ    +E     V+
Sbjct: 8   MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEE---VYVQ 64

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           + L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    + 
Sbjct: 65  VELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQS 124

Query: 121 WLSER 125
           +LSE 
Sbjct: 125 FLSEH 129
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Length = 128 Back     alignment and structure
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Length = 138 Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 152 Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
2ebm_A128 RWD domain-containing protein 1; alpha+beta sandwi 99.96
2yz0_A138 Serine/threonine-protein kinase GCN2; A-B-B-B-B-A- 99.96
1ukx_A137 GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple 99.95
2day_A128 Ring finger protein 25; ligase, metal-binding, UB1 99.93
2ebk_A128 RWD domain-containing protein 3; alpha+beta sandwi 99.93
2dax_A152 Protein C21ORF6; RWD domain, alpha+beta sandwich f 99.91
2daw_A154 RWD domain containing protein 2; alpha+beta sandwi 99.88
4a9a_C142 Translation machinery-associated protein 46; DRG-D 98.3
2a7l_A136 Hypothetical ubiquitin-conjugating enzyme LOC55284 95.5
2pwq_A216 Ubiquitin conjugating enzyme; structural genomics 94.44
2fo3_A125 Ubiquitin-conjugating enzyme; SGC, UBC, structural 94.15
2h2y_A136 Ubiquitin-conjugating enzyme; structural genomics, 94.13
1zdn_A158 Ubiquitin-conjugating enzyme E2S; structural genom 93.91
2e2c_A156 Ubiquitin conjugating enzyme; ubiquitin conjugatio 93.79
2ayv_A166 Ubiquitin-conjugating enzyme E2; structural genomi 93.78
1ayz_A169 UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin 93.63
2aak_A152 UBC1, ubiquitin conjugating enzyme; ubiquitin conj 93.55
1wzv_A155 Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A 93.5
2c2v_B154 Ubiquitin-conjugating enzyme E2 N; chaperone, heat 93.27
2c4o_A165 Ubiquitin-conjugating enzyme E2 D2; thioesterifica 93.23
2bep_A159 Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 93.16
1z2u_A150 Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro 92.98
1yh2_A169 HSPC150 protein similar to ubiquitin-conjugating e 92.83
4gpr_A151 Ubiquitin-conjugating enzyme family protein; ubiqu 92.82
1jat_A155 Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig 92.79
3bzh_A194 Ubiquitin-conjugating enzyme E2 E1; structural gen 92.71
2r0j_A149 Ubiquitin carrier protein; ubiquitin conjugating, 92.61
1yrv_A169 Ubiquitin-conjugating ligase MGC351130; structural 92.49
3fn1_B167 NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin 92.33
3rz3_A183 Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj 92.2
3h8k_A164 Ubiquitin-conjugating enzyme E2 G2; alpha beta, al 92.15
1fxt_A149 Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM 92.04
2awf_A172 Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co 92.02
1y8x_A160 Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju 91.33
2ucz_A165 UBC7, ubiquitin conjugating enzyme; ubiquitin conj 91.33
1c4z_D154 UBCH7, ubiquitin conjugating enzyme E2; bilobal st 91.31
2z5d_A179 Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig 90.89
2nvu_C180 NEDD8-conjugating enzyme UBC12; multifunction macr 90.66
2f4w_A187 Ubiquitin-conjugating enzyme E2, J2; endoplasmic r 90.65
3o2u_A190 NEDD8-conjugating enzyme UBC12; E2 conjugase, liga 90.64
1i7k_A179 Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A 90.61
2onu_A152 Ubiquitin-conjugating enzyme, putative; UBC, plasm 90.55
2q0v_A156 Ubiquitin-conjugating enzyme E2, putative; malaria 90.49
2gjd_A157 Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT 90.46
1jat_B138 Ubiquitin-conjugating enzyme variant MMS2; UEV, li 90.34
2grr_A161 Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj 89.75
3rcz_B163 SUMO-conjugating enzyme UBC9; SUMO-like domain, pr 89.69
2y9m_A172 Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra 89.46
2a4d_A160 Ubiquitin-conjugating enzyme E2 variant 1; alterna 89.0
4ds2_A167 Ubiquitin-conjugating enzyme E2, putative; structu 88.93
1yf9_A171 Ubiquitin carrier protein 4; SGPP, structural geno 88.79
2f4z_A193 Tgtwinscan_2721 - E2 domain; ubiquitin conjugating 88.77
3k9o_A201 Ubiquitin-conjugating enzyme E2 K; E2-25K, complex 88.66
3kpa_A168 Probable ubiquitin fold modifier conjugating ENZY; 88.63
1zuo_A186 Hypothetical protein LOC92912; ligase, ubiquitin-c 88.54
2z6o_A172 UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p 86.95
3e46_A253 Ubiquitin-conjugating enzyme E2-25 kDa; huntington 86.53
4ddg_A 399 Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI 85.97
2hlw_A170 Ubiquitin-conjugating enzyme E2 variant 1; ubiquit 85.3
1tte_A215 Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq 83.73
3ceg_A323 Baculoviral IAP repeat-containing protein 6; apopt 83.53
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
Probab=99.96  E-value=5e-29  Score=199.68  Aligned_cols=120  Identities=38%  Similarity=0.534  Sum_probs=108.1

Q ss_pred             CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEE
Q 025056            1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV   80 (258)
Q Consensus         1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l   80 (258)
                      ||+|.++|.+||+||+|||+++|++++.       .+.+|+|+|.+..++.    ...++|.|+|+||++||+++|.|.|
T Consensus         8 m~~~~e~q~~EleaL~sIy~d~~~~~~~-------~~~~~~i~i~~~~~~~----~~~~~~~L~v~~p~~YP~~~P~i~l   76 (128)
T 2ebm_A            8 MTDYGEEQRNELEALESIYPDSFTVLSE-------NPPSFTITVTSEAGEN----DETVQTTLKFTYSEKYPDEAPLYEI   76 (128)
T ss_dssp             CCCHHHHHHHHHHHHHHHCSSSEEECCS-------SSCEEEECCBCCCCTT----SCCCBEEEEEECCSSTTTSCCEEEE
T ss_pred             CCChHHHHHHHHHHHHHHccCceEEccC-------CCCEEEEEEecCCCCC----cCceeEEEEEEeCCCCCCCCceEEE
Confidence            8999999999999999999999998865       2479999998764321    2357899999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcccc
Q 025056           81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERYSQDAG  131 (258)
Q Consensus        81 ~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~~~~~~  131 (258)
                      .+.+||+...+..|++.|.+.+++++|++|||+||+|||++|.+++++++.
T Consensus        77 ~~~~~l~~~~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~e~~~~~~~  127 (128)
T 2ebm_A           77 FSQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKT  127 (128)
T ss_dssp             EEESSCCHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHHHhCCCEEHHHHHHHHHHHHHHHHHHHhc
Confidence            988899999999999999999999999999999999999999999988754
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3 Back     alignment and structure
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A Back     alignment and structure
>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3 Back     alignment and structure
>4a9a_C Translation machinery-associated protein 46; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Back     alignment and structure
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Back     alignment and structure
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Back     alignment and structure
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Back     alignment and structure
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Back     alignment and structure
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Back     alignment and structure
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Back     alignment and structure
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Back     alignment and structure
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Back     alignment and structure
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica} Back     alignment and structure
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Back     alignment and structure
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Back     alignment and structure
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Back     alignment and structure
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Back     alignment and structure
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Back     alignment and structure
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A Back     alignment and structure
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Back     alignment and structure
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Back     alignment and structure
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Back     alignment and structure
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Back     alignment and structure
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Back     alignment and structure
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Back     alignment and structure
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Back     alignment and structure
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Back     alignment and structure
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Back     alignment and structure
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Back     alignment and structure
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Back     alignment and structure
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Back     alignment and structure
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1 Back     alignment and structure
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Back     alignment and structure
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Back     alignment and structure
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Back     alignment and structure
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Back     alignment and structure
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Back     alignment and structure
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Back     alignment and structure
>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4 Back     alignment and structure
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Back     alignment and structure
>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A Back     alignment and structure
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Back     alignment and structure
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Back     alignment and structure
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Back     alignment and structure
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1ukxa_137 d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like prote 1e-28
d2daya1115 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF 1e-21
d2daxa1140 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 1e-13
d2dawa1141 d.20.1.3 (A:8-148) RWD domain-containing protein 2 7e-11
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (258), Expect = 1e-28
 Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 3/125 (2%)

Query: 1   MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVE 60
           M  + Q Q+ E++ALEAI   +F+++     G         + L PQ    +E     V+
Sbjct: 8   MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEE---VYVQ 64

Query: 61  LALIFSHTEKYPDEPPLLNVKSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKE 120
           + L       YPD  P +++K+ +G+    + +LK  LE+ A +  G  MI+ L    + 
Sbjct: 65  VELRVKCPPTYPDVVPEIDLKNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQS 124

Query: 121 WLSER 125
           +LSE 
Sbjct: 125 FLSEH 129
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 141 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1ukxa_137 EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu 99.96
d2daya1115 E3 ubiquitin-protein ligase RNF25 {Human (Homo sap 99.93
d2dawa1141 RWD domain-containing protein 2 {Human (Homo sapie 99.87
d2daxa1140 Uncharacterized protein C21orf6 {Human (Homo sapie 99.86
d2a7la1117 Ubiquitin-protein ligase W (E2 W) {Human (Homo sap 95.07
d2awfa1125 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 94.33
d1y8xa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 93.88
d2e2ca_156 Ubiquitin conjugating enzyme, UBC {Clam (Spisula s 93.51
d2fo3a1109 Putative ubiquitin-conjugating enzyme, E2 domain { 93.48
d1z2ua1147 Ubiquitin conjugating enzyme, UBC {Caenorhabditis 93.17
d1yh2a1154 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 92.92
d1pzva_161 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 92.78
d1ayza_153 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 92.34
d1zdna1151 Ubiquitin conjugating enzyme, UBC {Human(Homo sapi 92.32
d1c4zd_144 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 92.25
d1j7db_149 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 92.14
d1wzva1150 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 92.04
d1fzya_149 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 91.81
d1i7ka_146 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 91.7
d2f4wa1157 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 91.69
d1yrva1148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 91.64
d2uyza1156 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 91.63
d2ucza_164 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 91.61
d1yf9a1158 Ubiquitin conjugating enzyme, UBC {Leishmania majo 91.43
d2z5da1152 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 91.15
d2bepa1154 Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain 91.03
d1jata_152 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 90.93
d1z3da1149 Ubiquitin conjugating enzyme, UBC {Nematode (Caeno 90.57
d2f4za1161 Hypothetical protein Tgtwinscan_2721, E2 domain {T 90.25
d1jatb_136 Ubiquitin conjugating enzyme, UBC {Baker's yeast ( 89.77
d1y6la_148 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 89.48
d2a4da1139 Ubiquitin conjugating enzyme, UBC {Human (Homo sap 89.22
d1zuoa1162 Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom 88.74
d1s1qa_141 Tumor susceptibility gene 101 (TSG101) {Human (Hom 82.85
>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1e-28  Score=198.28  Aligned_cols=123  Identities=28%  Similarity=0.434  Sum_probs=109.8

Q ss_pred             CCChHHHHHHHHHHHHHhcCCceeeccCCCCCCCCCCceEEEEecCCCCCCccCCCCCceEEEEEeeCCCCCCCCCceEE
Q 025056            1 MTDHVQEQEMEIEALEAILMDEFKEIHSGESGLNTSNQCFQVTLSPQDDEADESTMPPVELALIFSHTEKYPDEPPLLNV   80 (258)
Q Consensus         1 m~d~~EeQ~eElEALeSIY~de~~~i~~~~~~~~~~~~~f~I~l~~~~~~~~~~~~~~~~l~L~f~~p~~YP~~~P~i~l   80 (258)
                      |++|+|+|++||+||+|||+++|+.+......+...+..|+|.|.+...+.   ....++|.|.|+||++||.++|.+.+
T Consensus         8 ~~~~~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~i~L~~~lp~~YP~~~P~i~~   84 (137)
T d1ukxa_           8 MESYSQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAG---EEVYVQVELRVKCPPTYPDVVPEIDL   84 (137)
T ss_dssp             CCCHHHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCS---SSCSCEEEEEECCCTTTTSSCCCCEE
T ss_pred             cccHHHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCC---ccceEEEEEEEECCCCCCcccceEEE
Confidence            899999999999999999999999988765555556778999998865432   23457899999999999999999999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHh
Q 025056           81 KSLRGIQAGDLKILKEKLEQEASENLGMAMIYTLVTSAKEWLSERY  126 (258)
Q Consensus        81 ~~~~gL~~~~~~~L~~~L~~~~eenlG~~mIF~lve~lkE~L~e~~  126 (258)
                      .+.+||+..++..|.+.|...+++++|++|||+||+||||||.++.
T Consensus        85 ~~~~~l~~~~~~~L~~~l~~~~~e~~G~~mif~lv~~lqe~L~e~n  130 (137)
T d1ukxa_          85 KNAKGLSNESVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHN  130 (137)
T ss_dssp             EEEESSSSSHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHcCCCEeHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999874
>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Back     information, alignment and structure
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Back     information, alignment and structure
>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Back     information, alignment and structure
>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Back     information, alignment and structure
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Back     information, alignment and structure
>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Back     information, alignment and structure
>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Back     information, alignment and structure
>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Back     information, alignment and structure
>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Back     information, alignment and structure
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Back     information, alignment and structure
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Back     information, alignment and structure
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Back     information, alignment and structure
>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Back     information, alignment and structure
>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Back     information, alignment and structure
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Back     information, alignment and structure
>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Back     information, alignment and structure
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Back     information, alignment and structure
>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Back     information, alignment and structure
>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Back     information, alignment and structure
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Back     information, alignment and structure
>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Back     information, alignment and structure
>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Back     information, alignment and structure
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Back     information, alignment and structure
>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Back     information, alignment and structure
>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure