Citrus Sinensis ID: 025072

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MSRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
ccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccc
cccHHHHHcccccccHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccc
MSRWAAIASylpqrtdndikNYWNTHLKKKLKKlqtgsdggqnnqdgfsstsqqasnkgQWERRLQTDIHMAKQALCEAlsldktsptspanlllspdqsnlkpmssttynntpyasnaENISRLLQNwmknppkisettqdsftntayasaagsgsnissegalsattpegfdslfsfnssnsdasqsettanltsetslfqdeskpkldsrhhhhhqvplTLLEKWLFDDVaaahqghddddlinmsledstvgff
MSRWAAIAsylpqrtdndiknYWNTHLKKKLKKLQTGSDGgqnnqdgfsstsqqasnKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLlspdqsnlkpmsSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
MSRWAAIASYLPQRTDNDIKNYWNTHlkkklkklQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTayasaagsgsnissegaLSATTPEGfdslfsfnssnsdasqsETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
***WAAIASYLPQRTDNDIKNYWNTHL**************************************************************************************************************************************************************************************************LTLLEKWLFDDVAAAH*********************
*SRWAAIASYLPQRTDNDIKNYWNTHLK***********************************************************************************************RLL************************************************************************************************TLLEKWLFDDVAAAHQGHDDDDLINMSLEDS*V*FF
MSRWAAIASYLPQRTDNDIKNYWNTHLKKKLK*****************************ERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYAS**************SATTPEGFDSLFSFNS**************************************VPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
*SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQ************************QWERRLQTDIHMAKQALCEALSL*****************************************RLLQNWMK**************************************************************************************HQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDST*GFF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEGFDSLFSFNSSNSDASQSETTANLTSETSLFQDESKPKLDSRHHHHHQVPLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
P81392316 Myb-related protein 306 O N/A no 0.837 0.683 0.517 1e-49
Q9SPG2366 Transcription factor MYB2 no no 0.135 0.095 0.621 1e-07
P81394268 Myb-related protein 315 O N/A no 0.124 0.119 0.718 1e-07
Q8GWP0360 Transcription factor MYB3 no no 0.135 0.097 0.648 2e-07
P80074 449 Myb-related protein Pp1 ( N/A no 0.127 0.073 0.675 2e-07
Q9M2Y9310 Transcription factor RAX3 no no 0.116 0.096 0.8 3e-07
Q9SPG5338 Transcription factor MYB7 no no 0.112 0.085 0.689 3e-07
Q9FG68329 Transcription factor RAX1 no no 0.116 0.091 0.766 4e-07
Q38850249 Transcription repressor M no no 0.135 0.140 0.648 5e-07
O49608274 Transcription factor MYB3 no no 0.205 0.193 0.490 6e-07
>sp|P81392|MYB06_ANTMA Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1 Back     alignment and function desciption
 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 131/253 (51%), Positives = 158/253 (62%), Gaps = 37/253 (14%)

Query: 3   RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDG-FSSTSQQASNKGQW 61
           RWAAIASYLP RTDNDIKNYWNTHLKKKL+KLQ+  +G    QDG  S  S ++ +KGQW
Sbjct: 88  RWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENG--KCQDGNSSVDSDKSVSKGQW 145

Query: 62  ERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSSTTYNNTPYASNAEN 121
           ERRLQTDIHMAKQALC+ALSLDKTS ++    L +   +  +P  ++TY      S+AEN
Sbjct: 146 ERRLQTDIHMAKQALCDALSLDKTSSSTDDPKLSTVQTTQPRPFQASTY------SSAEN 199

Query: 122 ISRLLQNWMKNPP---------KISETTQDSFTNTAYASAAGSGSNISSEGALSATTPEG 172
           I+RLL+NW K  P           SE+T  SF    Y S   S S+  SEGA+S      
Sbjct: 200 IARLLENWKKKSPVNASSTSQAGSSESTTTSFN---YPSVCLSTSS-PSEGAIST----- 250

Query: 173 FDSLFSFNSSNSDASQSETTANLTSETSL--FQDESKPKLDSRHHHHHQVPLTLLEKWLF 230
             +  SFNSSNSD  +    A   + T+   FQDESKP LD      +Q+PL+LLEKWL 
Sbjct: 251 --NFISFNSSNSDILEDHDQAKFEAATNGVNFQDESKPILD------NQMPLSLLEKWLL 302

Query: 231 DDVAAAHQGHDDD 243
           DD AA  QG D D
Sbjct: 303 DDSAAVAQGQDVD 315
Transcription factor.
Antirrhinum majus (taxid: 4151)
>sp|Q9SPG2|MYB28_ARATH Transcription factor MYB28 OS=Arabidopsis thaliana GN=MYB28 PE=1 SV=1 Back     alignment and function description
>sp|P81394|MYB15_ANTMA Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1 Back     alignment and function description
>sp|Q8GWP0|MYB39_ARATH Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1 Back     alignment and function description
>sp|P80074|MYB1_PHYPA Myb-related protein Pp1 (Fragment) OS=Physcomitrella patens subsp. patens GN=PP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9M2Y9|RAX3_ARATH Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SPG5|MYB76_ARATH Transcription factor MYB76 OS=Arabidopsis thaliana GN=MYB76 PE=1 SV=1 Back     alignment and function description
>sp|Q9FG68|RAX1_ARATH Transcription factor RAX1 OS=Arabidopsis thaliana GN=RAX1 PE=2 SV=1 Back     alignment and function description
>sp|Q38850|MYB5_ARATH Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1 Back     alignment and function description
>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
255547411332 r2r3-myb transcription factor, putative 0.856 0.665 0.525 5e-57
302398935 374 MYB domain class transcription factor [M 0.941 0.649 0.526 1e-55
225457423307 PREDICTED: myb-related protein 306 [Viti 0.848 0.713 0.578 5e-54
117957143307 R2R3 Myb30 transcription factor [Vitis v 0.848 0.713 0.578 6e-54
363806964319 uncharacterized protein LOC100807020 [Gl 0.895 0.724 0.525 1e-53
356516796333 PREDICTED: myb-related protein 306-like 0.930 0.720 0.496 8e-51
357458775310 R2R3-MYB transcription factor [Medicago 0.848 0.706 0.461 1e-50
224140977322 predicted protein [Populus trichocarpa] 0.817 0.655 0.504 1e-48
75107027316 RecName: Full=Myb-related protein 306 gi 0.837 0.683 0.517 6e-48
318611279275 R2R3-MYB transcription factor [Lupinus a 0.914 0.858 0.501 6e-48
>gi|255547411|ref|XP_002514763.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223546367|gb|EEF47869.1| r2r3-myb transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  226 bits (577), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 146/278 (52%), Positives = 177/278 (63%), Gaps = 57/278 (20%)

Query: 3   RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQASNKGQWE 62
           RWAAIASYLPQRTDNDIKNYWNTHLKKKL +L+ G D  +       S SQ    KGQWE
Sbjct: 90  RWAAIASYLPQRTDNDIKNYWNTHLKKKLTELKDGQDLDR------LSVSQP---KGQWE 140

Query: 63  RRLQTDIHMAKQALCEALSLDKTSPTSP----------------ANLLLSPDQSNLKPMS 106
           RRLQTDIH+AKQALCEALSLDK  PT+P                +NL++ P Q+      
Sbjct: 141 RRLQTDIHLAKQALCEALSLDK--PTTPLTHLKPSVATTGANGASNLIIRPYQAQ----- 193

Query: 107 STTYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTAYASAAGSGSNISSEGALS 166
             +  +T YAS+AENI+RLL+NWMKN P+   T ++S +              S+EGA S
Sbjct: 194 -ESNTSTAYASSAENIARLLENWMKNSPRQVLTAENSSS--------------STEGAHS 238

Query: 167 ATTPEG---FDSLFSFNSSNSDASQS-ETTANLTSETSLFQDESKPKLDSRHHHHH--QV 220
            T P            +SSNSDASQS +  ANLT ETSLFQDESK  ++  HH+HH  QV
Sbjct: 239 TTIPSSQGFNLLFSFNSSSNSDASQSVDENANLTPETSLFQDESKSDMEDNHHNHHLQQV 298

Query: 221 PLTLLEKWLFDDVAAAHQGHDDDDLINMSLEDSTVGFF 258
           PL+LLEKWLFD+ A   QGH  DDL+N+SLE++ +G F
Sbjct: 299 PLSLLEKWLFDEGAV--QGH--DDLVNISLEETAIGLF 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302398935|gb|ADL36762.1| MYB domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|225457423|ref|XP_002284926.1| PREDICTED: myb-related protein 306 [Vitis vinifera] Back     alignment and taxonomy information
>gi|117957143|gb|ABK59040.1| R2R3 Myb30 transcription factor [Vitis vinifera] Back     alignment and taxonomy information
>gi|363806964|ref|NP_001242312.1| uncharacterized protein LOC100807020 [Glycine max] gi|255639323|gb|ACU19959.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356516796|ref|XP_003527079.1| PREDICTED: myb-related protein 306-like [Glycine max] Back     alignment and taxonomy information
>gi|357458775|ref|XP_003599668.1| R2R3-MYB transcription factor [Medicago truncatula] gi|355488716|gb|AES69919.1| R2R3-MYB transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|224140977|ref|XP_002323853.1| predicted protein [Populus trichocarpa] gi|222866855|gb|EEF03986.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75107027|sp|P81392.1|MYB06_ANTMA RecName: Full=Myb-related protein 306 gi|256828|gb|AAB23528.1| Myb oncoprotein homolog {clone 306} [Antirrhinum majus=snapdragons, J1:522, flowers, Peptide, 316 aa] Back     alignment and taxonomy information
>gi|318611279|dbj|BAJ61426.1| R2R3-MYB transcription factor [Lupinus albus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
TAIR|locus:2019185330 MYB31 "myb domain protein 31" 0.868 0.678 0.386 4.6e-34
TAIR|locus:2154119352 MYB96 "myb domain protein 96" 0.872 0.639 0.4 3.2e-33
TAIR|locus:2090764323 MYB30 "myb domain protein 30" 0.558 0.445 0.452 3.3e-30
TAIR|locus:2079182333 MYB94 "myb domain protein 94" 0.899 0.696 0.376 3.9e-28
TAIR|locus:2025565280 MYB60 "myb domain protein 60" 0.096 0.089 0.88 1.1e-15
TAIR|locus:2150891326 MYB16 "myb domain protein 16" 0.279 0.220 0.397 1.2e-08
TAIR|locus:2102152388 MYB106 "myb domain protein 106 0.449 0.298 0.301 1.3e-08
TAIR|locus:2174557333 MYB36 "myb domain protein 36" 0.449 0.348 0.356 2.3e-06
TAIR|locus:2038520246 MYB13 "myb domain protein 13" 0.457 0.479 0.310 3.3e-06
TAIR|locus:2205283282 MYB20 "myb domain protein 20" 0.096 0.088 0.72 7.6e-06
TAIR|locus:2019185 MYB31 "myb domain protein 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 104/269 (38%), Positives = 139/269 (51%)

Query:     2 SRWAAIASYLPQRTDNDIKNYWNTHXXXXXXXX--QTG----------SD-GGQNNQDGF 48
             +RWAAIASYLPQRTDNDIKNYWNTH          Q G          +D    NN +  
Sbjct:    87 NRWAAIASYLPQRTDNDIKNYWNTHLKKKLVMMKFQNGIINENKTNLATDISSCNNNNNG 146

Query:    49 SSTSQQASNKGQWERRLQTDIHMAKQALCEALSLDKTSPTSPANLLLSPDQSNLKPMSST 108
              + +++ +NKGQWE++LQTDI+MAKQAL +ALSLD+  P+S    L+ PD  + KP   +
Sbjct:   147 CNHNKRTTNKGQWEKKLQTDINMAKQALFQALSLDQ--PSS----LIPPDPDSPKPHHHS 200

Query:   109 TYNNTPYASNAENISRLLQNWMKNPPKISETTQDSFTNTXXXXXXXXXXXXXXXXXLSAT 168
             T   T YAS+ +NIS+LLQNW  +    S+    S +N                   S+ 
Sbjct:   201 T---TTYASSTDNISKLLQNWTSSSS--SKPNTSSVSNNRS----------------SSP 239

Query:   169 TPEGXXXXXXXXXXXXXXXXXETTANLTSETSLFQDESKPKLD-----SRHHHHHQVPLT 223
                G                 +   NL SETS+F+ ESKP +D     +      Q  L+
Sbjct:   240 GEGGLFDHHSLFSSNSESGSVDEKLNLMSETSMFKGESKPDIDMEATPTTTTTDDQGSLS 299

Query:   224 LLEKWLFDDVAAAHQGHDDDDLINMSLED 252
             L+EKWLFDD          +DLI++SLE+
Sbjct:   300 LIEKWLFDDQGLVQCDDSQEDLIDVSLEE 328
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0009751 "response to salicylic acid stimulus" evidence=IEP
GO:0010200 "response to chitin" evidence=IEP
TAIR|locus:2154119 MYB96 "myb domain protein 96" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090764 MYB30 "myb domain protein 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2079182 MYB94 "myb domain protein 94" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025565 MYB60 "myb domain protein 60" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150891 MYB16 "myb domain protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102152 MYB106 "myb domain protein 106" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174557 MYB36 "myb domain protein 36" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038520 MYB13 "myb domain protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2205283 MYB20 "myb domain protein 20" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
MYB30
SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (307 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
PLN03212249 PLN03212, PLN03212, Transcription repressor MYB5; 5e-08
pfam0024947 pfam00249, Myb_DNA-binding, Myb-like DNA-binding d 1e-06
PLN03091 459 PLN03091, PLN03091, hypothetical protein; Provisio 1e-06
smart0071749 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII 3e-06
cd0016745 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA- 7e-06
>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional Back     alignment and domain information 
 Score = 52.4 bits (125), Expect = 5e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%), Gaps = 2/38 (5%)

Query: 2   SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSD 39
           +RW+ IA  +P RTDN+IKNYWNTHL+KKL  L+ G D
Sbjct: 98  NRWSLIAGRIPGRTDNEIKNYWNTHLRKKL--LRQGID 133

Length = 249
>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
KOG0048238 consensus Transcription factor, Myb superfamily [T 99.24
PLN03212249 Transcription repressor MYB5; Provisional 98.59
PLN03091 459 hypothetical protein; Provisional 98.55
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.08
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.77
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 96.48
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 96.17
PLN03212249 Transcription repressor MYB5; Provisional 89.35
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information 
Probab=99.24  E-value=4.4e-12  Score=112.90  Aligned_cols=36  Identities=61%  Similarity=1.000  Sum_probs=34.1

Q ss_pred             CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHhhcCC
Q 025072            2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTG   37 (258)
Q Consensus         2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~~~s~   37 (258)
                      |||++||++|||||||+||||||++||||+.+++.+
T Consensus        82 NrWs~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~  117 (238)
T KOG0048|consen   82 NRWSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMGID  117 (238)
T ss_pred             cHHHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            899999999999999999999999999999998843

>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 2e-16
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 1e-15
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 2e-14
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 2e-13
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 5e-13
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 4e-12
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131 Back     alignment and structure
 Score = 72.7 bits (179), Expect = 2e-16
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query: 3   RWAAIASYLPQRTDNDIKNYWNTHLKKKLKKLQTGSDGGQNNQDGFSSTSQQA 55
           +W+ IA  +P RTDN IKN WN+ + K++       +    ++      +   
Sbjct: 75  KWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKRKAADVP 127
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126 Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 98.36
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 98.19
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 98.14
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 98.01
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 97.18
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.89
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 97.88
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.82
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.8
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.75
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.75
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.71
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.68
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.63
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.58
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.57
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.47
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.37
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 97.31
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 96.92
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 96.81
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.75
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 96.57
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.56
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.41
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.21
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.93
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 95.92
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 95.82
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 95.69
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.68
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 95.37
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 94.56
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 94.49
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 94.38
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 93.71
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 93.59
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 90.98
4eef_G74 F-HB80.4, designed hemagglutinin binding protein; 90.17
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 87.77
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 87.46
4iej_A93 DNA methyltransferase 1-associated protein 1; DNA 82.98
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 83.49
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
Probab=98.36  E-value=1.8e-07  Score=68.50  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             CcHHHHhCcCCCCChHHHHHHHHHHHHHHHHh
Q 025072            2 SRWAAIASYLPQRTDNDIKNYWNTHLKKKLKK   33 (258)
Q Consensus         2 NkWs~IAk~LPGRTDN~IKNrWnt~LkKklk~   33 (258)
                      ++|..||++|||||++.|||||+.+++++++.
T Consensus        29 ~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A           29 RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999887766
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A* Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1gv2a247 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou 9e-08
d1igna186 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba 3e-07
d2cu7a165 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap 8e-07
d2iw5b165 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu 5e-06
d1xc5a168 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 6e-06
d1guua_50 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 1e-04
d1gvda_52 a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus 2e-04
d2cjja163 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti 5e-04
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.6 bits (108), Expect = 9e-08
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 2  SRWAAIASYLPQRTDNDIKNYWNTHLK 28
          +RWA IA  LP RTDN IKN+WN+ ++
Sbjct: 21 NRWAEIAKLLPGRTDNAIKNHWNSTMR 47
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86 Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68 Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50 Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52 Back     information, alignment and structure
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 98.58
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.61
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 97.6
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.59
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.55
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.53
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.02
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 96.94
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 96.32
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 96.25
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 96.22
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 96.07
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.04
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 95.76
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 84.15
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=8.8e-09  Score=69.46  Aligned_cols=27  Identities=59%  Similarity=1.088  Sum_probs=25.1

Q ss_pred             CcHHHHhCcCCCCChHHHHHHHHHHHH
Q 025072            2 SRWAAIASYLPQRTDNDIKNYWNTHLK   28 (258)
Q Consensus         2 NkWs~IAk~LPGRTDN~IKNrWnt~Lk   28 (258)
                      ++|+.||++|||||++.|||||+.+||
T Consensus        21 ~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2          21 NRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             SCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             hHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            689999999999999999999998764
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure