Citrus Sinensis ID: 025092

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Secondary Structure (PSIPRED)
cccccHHHcccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccEEEEccccccccccccccccEEEEEccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHccEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHccccHccccccccccccEEEccccEEEEEccccccEEEEEccccEEEEEEcccccccEEEEEEccccccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEEEEEEcccccccccEEEEEEEEEccEEEEEEEccccHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhvsnikptQIVCRAQkqavqeddgsAVSRRLALTVLIGAAavgskvspadaaygesanvfgkpktntdflpyngdgfklsipskwnpskerefpgqvlryednfdsnsnvsviitptdkksitdygspeefLSKVDYLLGkqaysgktsseggfdpdaVATANIleasvrppyyFLSVLTrtadgdeggkhQLITATVKGGKLYICKAqagdkrwfkGTRKYVESTASSFSVA
Flexible Loop (DISEMBL)
mastqcflhhhalsttpartsssqrhVSNIKPTQIVCRAQKqavqeddgsAVSRRLALTVLIGAAAVGSKVSPADAAYGesanvfgkpktnTDFLPYNGDGFklsipskwnpsKEREFPGQVLRyednfdsnsnvsviitptdkksitdygspEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRtadgdeggKHQLItatvkggkLYICKAqagdkrwfkgTRKYVESTASSFSVA
Low Complexity Region (SEG)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Disordered region (IsUnstruct)
**********************************IVC**************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSI***************VLRYEDNF****NVSVIITPT****ITDYGSPEEFLSKVDYLLGKQAY************DAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYV**********
Disordered Region (DISOPRED)
*ASTQC*L************************************************ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQA*************************VRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Disordered Region (DISEMBL)
MASTQCFLHHHAL***************NIKPTQIVCRA************VSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYV**********
Disordered Region (DISPRO)
*******************************PTQIVCRAQKQ*******SAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9SLQ8	263	Oxygen-evolving enhancer	N/A	no	0.996	0.977	0.814	1e-120
Q7DM39	268	Oxygen-evolving enhancer	N/A	no	1.0	0.962	0.779	1e-115
P16059	259	Oxygen-evolving enhancer	N/A	no	0.988	0.984	0.782	1e-114
P93566	260	Oxygen-evolving enhancer	N/A	no	0.980	0.973	0.770	1e-113
P18212	265	Oxygen-evolving enhancer	N/A	no	0.996	0.969	0.770	1e-113
Q42029	263	Oxygen-evolving enhancer	yes	no	0.992	0.973	0.769	1e-113
P29795	258	Oxygen-evolving enhancer	N/A	no	0.965	0.965	0.768	1e-112
P12302	267	Oxygen-evolving enhancer	N/A	no	1.0	0.966	0.741	1e-111
Q04127	266	Oxygen-evolving enhancer	N/A	no	0.996	0.966	0.741	1e-110
O49080	264	Oxygen-evolving enhancer	N/A	no	0.996	0.973	0.739	1e-109

>sp|Q9SLQ8|PSBP_CUCSA Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1

 Score =  430 bits (1105), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 215/264 (81%), Positives = 231/264 (87%), Gaps = 7/264 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGG
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGG 179

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQ 234
           FDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQ
Sbjct: 180 FDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 239

Query: 235 AGDKRWFKGTRKYVESTASSFSVA 258
           AGDKRWFKG RK+VE  ASSFSVA
Sbjct: 240 AGDKRWFKGARKFVEGAASSFSVA 263

May be involved in the regulation of photosystem II.
Cucumis sativus (taxid: 3659)

>sp|Q7DM39|PSBP1_TOBAC Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/268 (77%), Positives = 234/268 (87%), Gaps = 10/268 (3%)

Query: 1   MASTQCFLHHHALSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAV-QEDDGSAV--SR 54
           MASTQCFLH HALS++ ART+   SSQR+VS++KP Q+VCRAQKQ+  QEDDG++V  SR
Sbjct: 1   MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSR 60

Query: 55  RLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSK 114
           RLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL YNGDGFKL +P+KWNPSK
Sbjct: 61  RLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAYNGDGFKLQVPAKWNPSK 120

Query: 115 EREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTS 174
           E EFPGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT 
Sbjct: 121 EVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTD 180

Query: 175 SEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYI 230
           SEGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI+ATV GGKLYI
Sbjct: 181 SEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYI 240

Query: 231 CKAQAGDKRWFKGTRKYVESTASSFSVA 258
           CKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct: 241 CKAQAGDKRWFKGARKFVENAATSFSVA 268

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|P16059|PSBP_PEA Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1

 Score =  410 bits (1053), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/262 (78%), Positives = 221/262 (84%), Gaps = 7/262 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+V
Sbjct: 1   MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSV 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
            +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLITATVK GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAG 237

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG RK+VE TASSFSVA
Sbjct: 238 DKRWFKGARKFVEDTASSFSVA 259

May be involved in the regulation of photosystem II.

Pisum sativum (taxid: 3888)

>sp|P93566|PSBP_SOLTU Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/262 (77%), Positives = 224/262 (85%), Gaps = 9/262 (3%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTL 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPG
Sbjct: 59  LIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+
Sbjct: 119 QVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFE 178

Query: 181 PDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
             AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAG
Sbjct: 179 SGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAG 238

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG +K+VE+ A+SFS+A
Sbjct: 239 DKRWFKGAKKFVENAATSFSIA 260

May be involved in the regulation of photosystem II.

Solanum tuberosum (taxid: 4113)

>sp|P18212|PSBP2_TOBAC Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/266 (77%), Positives = 230/266 (86%), Gaps = 9/266 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ-AVQEDD--GSAVSRRL 56
           MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ A QED+    +VSRRL
Sbjct: 1   MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRL 59

Query: 57  ALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKER 116
           ALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE 
Sbjct: 60  ALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEV 119

Query: 117 EFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE 176
           E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SE
Sbjct: 120 EYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSE 179

Query: 177 GGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICK 232
           GGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLITATV  GKLYICK
Sbjct: 180 GGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICK 239

Query: 233 AQAGDKRWFKGTRKYVESTASSFSVA 258
           AQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 240 AQAGDKRWFKGAKKFVENTATSFSLA 265

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|Q42029|PSBP1_ARATH Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2

 Score =  407 bits (1046), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/265 (76%), Positives = 235/265 (88%), Gaps = 9/265 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct: 1   MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct: 59  LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEG
Sbjct: 119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEG 178

Query: 178 GFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKA 233
           GFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKA
Sbjct: 179 GFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKA 238

Query: 234 QAGDKRWFKGTRKYVESTASSFSVA 258
           QAGDKRWFKG RK+VES A+SFSVA
Sbjct: 239 QAGDKRWFKGARKFVESAATSFSVA 263

May be involved in the regulation of photosystem II.

Arabidopsis thaliana (taxid: 3702)

>sp|P29795|PSBP_SOLLC Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1

 Score =  404 bits (1038), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 203/264 (76%), Positives = 225/264 (85%), Gaps = 15/264 (5%)

Query: 2   ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGS--AVSRRLAL 58
           ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLAL
Sbjct: 3   ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLAL 54

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           T+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+
Sbjct: 55  TLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEY 114

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDS SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGG
Sbjct: 115 PGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGG 174

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQ 234
           F+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQ
Sbjct: 175 FESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 234

Query: 235 AGDKRWFKGTRKYVESTASSFSVA 258
           AGDKRWFKG +K+VE+ A+SFS+A
Sbjct: 235 AGDKRWFKGAKKFVENAATSFSIA 258

May be involved in the regulation of photosystem II.

Solanum lycopersicum (taxid: 4081)

>sp|P12302|PSBP_SPIOL Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 227/267 (85%), Gaps = 9/267 (3%)

Query: 1   MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQEDD--GSAVSRR 55
           MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   E +   S VSRR
Sbjct: 1   MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRR 60

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE
Sbjct: 61  LALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKE 120

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
           +EFPGQVLRYEDNFD+ SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT S
Sbjct: 121 KEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDS 180

Query: 176 EGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYIC 231
           EGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYIC
Sbjct: 181 EGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYIC 240

Query: 232 KAQAGDKRWFKGTRKYVESTASSFSVA 258
           KAQAGDKRWFKG +K+VES  SSFSVA
Sbjct: 241 KAQAGDKRWFKGAKKFVESATSSFSVA 267

May be involved in the regulation of photosystem II.

Spinacia oleracea (taxid: 3562)

>sp|Q04127|PSBP3_TOBAC Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1

 Score =  396 bits (1018), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 198/267 (74%), Positives = 228/267 (85%), Gaps = 10/267 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQ--AVQEDD--GSAVSRR 55
           MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ +  A Q+D+    +VSRR
Sbjct: 1   MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRR 59

Query: 56  LALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE 115
           LALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  YNGDGFKL IPSKWNP+KE
Sbjct: 60  LALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTYNGDGFKLQIPSKWNPNKE 119

Query: 116 REFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS 175
            E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT S
Sbjct: 120 VEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDS 179

Query: 176 EGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYIC 231
           EGGF+ DAVA AN+LE S        YY+LS+LTRTADG+EGGKHQL+TATV  GKLYIC
Sbjct: 180 EGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYIC 239

Query: 232 KAQAGDKRWFKGTRKYVESTASSFSVA 258
           KAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 240 KAQAGDKRWFKGAKKFVENTATSFSLA 266

May be involved in the regulation of photosystem II.

Nicotiana tabacum (taxid: 4097)

>sp|O49080|PSBP_FRIAG Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1

 Score =  395 bits (1015), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/265 (73%), Positives = 222/265 (83%), Gaps = 8/265 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSS--SQRHVSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLA 57
           MAS+ CFL HHA ST PA TS   S R V  IKP+Q++CRAQK +   E+  +AVSRRLA
Sbjct: 1   MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLA 59

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE E
Sbjct: 60  LTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVE 119

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEG
Sbjct: 120 FPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEG 179

Query: 178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKA 233
           GFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKA
Sbjct: 180 GFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKA 239

Query: 234 QAGDKRWFKGTRKYVESTASSFSVA 258
           QAGDKRWFKG +K+VEST +SF+VA
Sbjct: 240 QAGDKRWFKGAKKFVESTTTSFNVA 264

May be involved in the regulation of photosystem II.

Fritillaria agrestis (taxid: 64177)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
224085421	262	hypothetical protein POPTRDRAFT_818640 [	0.996	0.980	0.832	1e-124
224062595	262	hypothetical protein POPTRDRAFT_551203 [	0.996	0.980	0.828	1e-122
225446775	259	PREDICTED: oxygen-evolving enhancer prot	0.988	0.984	0.824	1e-122
255561128	265	Oxygen-evolving enhancer protein 2, chlo	1.0	0.973	0.822	1e-122
388513061	259	unknown [Lotus japonicus]	0.988	0.984	0.832	1e-118
388519835	259	unknown [Lotus japonicus]	0.988	0.984	0.832	1e-118
449460024	263	PREDICTED: oxygen-evolving enhancer prot	0.996	0.977	0.814	1e-118
388503344	259	unknown [Lotus japonicus]	0.988	0.984	0.828	1e-117
356526942	262	PREDICTED: oxygen-evolving enhancer prot	0.992	0.977	0.806	1e-117
356501429	258	PREDICTED: oxygen-evolving enhancer prot	0.984	0.984	0.793	1e-114

>gi|224085421|ref|XP_002307570.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa] gi|118488107|gb|ABK95873.1| unknown [Populus trichocarpa] gi|222857019|gb|EEE94566.1| hypothetical protein POPTRDRAFT_818640 [Populus trichocarpa]

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/263 (83%), Positives = 237/263 (90%), Gaps = 6/263 (2%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR T SSQR V+N+KPTQ+ CRAQKQAVQE+D  AVSRRLALT
Sbjct: 1   MASTSCFLHHHAL-TTPARSTPSSQRQVANLKPTQLACRAQKQAVQEEDNGAVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKT+TDFLPYNGDGFKLS+PSKWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTDTDFLPYNGDGFKLSVPSKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 179
           GQVLRYEDNFD+ SNVSV++ PTDKKSITDYGSPEEFLSKVD+LLGKQ+    T+SEGGF
Sbjct: 120 GQVLRYEDNFDATSNVSVMVIPTDKKSITDYGSPEEFLSKVDFLLGKQSSLFATASEGGF 179

Query: 180 DPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQA 235
           DP+ VATANILE S        Y+FLSVLTRTADGDEGGKHQLITATVK GKLYICKAQA
Sbjct: 180 DPNTVATANILETSTPVVGGKQYFFLSVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 239

Query: 236 GDKRWFKGTRKYVESTASSFSVA 258
           GDKRWFKG RK+VESTASSFSVA
Sbjct: 240 GDKRWFKGARKFVESTASSFSVA 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062595|ref|XP_002300858.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa] gi|118487448|gb|ABK95552.1| unknown [Populus trichocarpa] gi|222842584|gb|EEE80131.1| hypothetical protein POPTRDRAFT_551203 [Populus trichocarpa]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/263 (82%), Positives = 233/263 (88%), Gaps = 6/263 (2%)

Query: 1   MASTQCFLHHHALSTTPAR-TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALT 59
           MAST CFLHHHAL TTPAR TSSSQR V N+KP Q+VCRAQKQAVQE+D   VSRRLALT
Sbjct: 1   MASTACFLHHHAL-TTPARSTSSSQRQVVNLKPAQLVCRAQKQAVQEEDDGVVSRRLALT 59

Query: 60  VLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFP 119
           VLIGAAA+GSKV+PADAAYGESAN+FGKPKTNTDFLPYNGDGFKLS+P+KWNPSKEREFP
Sbjct: 60  VLIGAAALGSKVAPADAAYGESANIFGKPKTNTDFLPYNGDGFKLSVPAKWNPSKEREFP 119

Query: 120 GQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 179
           GQVLRYEDNFD+ SN+SV++TPTD KSI DYGSPEEFLSKVDYLLGKQ+    TSSEGGF
Sbjct: 120 GQVLRYEDNFDATSNLSVMVTPTDTKSIADYGSPEEFLSKVDYLLGKQSSLFATSSEGGF 179

Query: 180 DPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQA 235
           D + VATANILE S        YYFLSVLTRTADGDEGGKHQLITATVK GKLYICKAQA
Sbjct: 180 DTNTVATANILETSTPVIDGKQYYFLSVLTRTADGDEGGKHQLITATVKDGKLYICKAQA 239

Query: 236 GDKRWFKGTRKYVESTASSFSVA 258
           GDKRWFKG RK+VES ASSFSVA
Sbjct: 240 GDKRWFKGARKFVESAASSFSVA 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446775|ref|XP_002283048.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic [Vitis vinifera] gi|147787750|emb|CAN60827.1| hypothetical protein VITISV_001116 [Vitis vinifera]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/262 (82%), Positives = 236/262 (90%), Gaps = 7/262 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MAST CFLHHHALST P R SS QR + +++P+Q+VCRAQKQA  EDDG+AVSRRLALTV
Sbjct: 1   MASTACFLHHHALST-PTRVSS-QRQLPSLRPSQLVCRAQKQAANEDDGAAVSRRLALTV 58

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAA+G+KV+PADAAYGE+ANVFGKPKTNTDFLPYNG+GFKLSIPSKWNPSKEREFPG
Sbjct: 59  LIGAAAIGTKVNPADAAYGEAANVFGKPKTNTDFLPYNGEGFKLSIPSKWNPSKEREFPG 118

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVD+LLGKQA+ G  ++EGGFD
Sbjct: 119 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDFLLGKQAFFGN-ANEGGFD 177

Query: 181 PDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
            DAVATANILE+S       PYY ++VLTRTADGDEGGKHQLITA V  GKLYICK QAG
Sbjct: 178 ADAVATANILESSTTTVGGKPYYTITVLTRTADGDEGGKHQLITAAVADGKLYICKVQAG 237

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG RKYVESTASSFS+A
Sbjct: 238 DKRWFKGARKYVESTASSFSIA 259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561128|ref|XP_002521576.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis] gi|223539254|gb|EEF40847.1| Oxygen-evolving enhancer protein 2, chloroplast precursor, putative [Ricinus communis]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/265 (82%), Positives = 239/265 (90%), Gaps = 7/265 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSS-SQRHVSNI-KPTQIVCRAQ-KQAVQEDDGSAVSRRLA 57
           MA+T CFLHH AL++TP R SS SQR VSN  KPTQ +CRA  KQ +QE+D S VSRRLA
Sbjct: 1   MATTGCFLHHPALTSTPNRLSSVSQRQVSNTTKPTQFICRASTKQPLQEEDLSLVSRRLA 60

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           LTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF+PYNGDGF+LS+PSKWNPSKERE
Sbjct: 61  LTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFMPYNGDGFQLSVPSKWNPSKERE 120

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLRYEDNFDSNSN+SV+ITPTDKKSITD+G+PEEFL+KVDYLLGKQAY GKT+SEG
Sbjct: 121 FPGQVLRYEDNFDSNSNLSVMITPTDKKSITDFGTPEEFLAKVDYLLGKQAYFGKTASEG 180

Query: 178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKA 233
           GFDP+AVATANIL++S +      YYFLSVLTRTADGDEGGKHQLITA VK GKLYICKA
Sbjct: 181 GFDPNAVATANILDSSTQVVGGKEYYFLSVLTRTADGDEGGKHQLITAAVKDGKLYICKA 240

Query: 234 QAGDKRWFKGTRKYVESTASSFSVA 258
           QAGDKRWFKG RK+VES ASSFSVA
Sbjct: 241 QAGDKRWFKGARKFVESAASSFSVA 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513061|gb|AFK44592.1| unknown [Lotus japonicus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/262 (83%), Positives = 231/262 (88%), Gaps = 7/262 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVED-VSPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
            +AVA ANILE+S        YY +SVLTRTADGDEGGKHQ+ITATV  GKLYICKAQAG
Sbjct: 178 ANAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519835|gb|AFK47979.1| unknown [Lotus japonicus]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/262 (83%), Positives = 231/262 (88%), Gaps = 7/262 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IKP QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKPNQIVCRAQKQQDVED-VSPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
            +AVA ANILE+S        YY +SVLTRTADGDEGGKHQ+ITATV  GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460024|ref|XP_004147746.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|449502131|ref|XP_004161551.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Cucumis sativus] gi|11134156|sp|Q9SLQ8.1|PSBP_CUCSA RecName: Full=Oxygen-evolving enhancer protein 2, chloroplastic; Short=OEE2; AltName: Full=23 kDa subunit of oxygen evolving system of photosystem II; AltName: Full=23 kDa thylakoid membrane protein; AltName: Full=OEC 23 kDa subunit; AltName: Full=OEC23; Flags: Precursor gi|6691487|dbj|BAA89317.1| 23kDa polypeptide of the oxygen-evolving complex of photosystem II [Cucumis sativus]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/264 (81%), Positives = 231/264 (87%), Gaps = 7/264 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQEDDGSAVSRRLAL 58
           MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   QE++G  VSRRLAL
Sbjct: 1   MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLAL 59

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREF
Sbjct: 60  TVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREF 119

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDSNSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGG
Sbjct: 120 PGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGG 179

Query: 179 FDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQ 234
           FDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQ
Sbjct: 180 FDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQ 239

Query: 235 AGDKRWFKGTRKYVESTASSFSVA 258
           AGDKRWFKG RK+VE  ASSFSVA
Sbjct: 240 AGDKRWFKGARKFVEGAASSFSVA 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503344|gb|AFK39738.1| unknown [Lotus japonicus]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/262 (82%), Positives = 230/262 (87%), Gaps = 7/262 (2%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTP RTSS QR V +IK  QIVCRAQKQ   ED  S VSRRLALT+
Sbjct: 1   MASTQCFLHHHAL-TTPTRTSS-QRQVVSIKSNQIVCRAQKQQDVEDV-SPVSRRLALTL 57

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKVSPADAAYGE+ANVFGKPK+NTDFLPYNGDGFKLSIP+KWNPSKEREFPG
Sbjct: 58  LIGAAAVGSKVSPADAAYGEAANVFGKPKSNTDFLPYNGDGFKLSIPAKWNPSKEREFPG 117

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QVLRYEDNFD+ SNVSVIIT TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD
Sbjct: 118 QVLRYEDNFDATSNVSVIITATDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTYSEGGFD 177

Query: 181 PDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
            +AVA ANILE+S        YY +SVLTRTADGDEGGKHQ+ITATV  GKLYICKAQAG
Sbjct: 178 TNAVAVANILESSAPVVGGKQYYNVSVLTRTADGDEGGKHQIITATVNDGKLYICKAQAG 237

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG RK+VES ASSFSVA
Sbjct: 238 DKRWFKGARKFVESAASSFSVA 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526942|ref|XP_003532074.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/264 (80%), Positives = 232/264 (87%), Gaps = 8/264 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQE--DDGSAVSRRLAL 58
           MASTQCFLHHHAL TTP R +SSQR V + KP  IVC+AQKQ VQE  D  + VSRRLAL
Sbjct: 1   MASTQCFLHHHAL-TTPTR-ASSQRLVVSTKPNHIVCKAQKQVVQEGEDTTNIVSRRLAL 58

Query: 59  TVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF 118
           TVLIGAAAVGSKV+PADAAYGE+ANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKE E+
Sbjct: 59  TVLIGAAAVGSKVAPADAAYGEAANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEVEY 118

Query: 119 PGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGG 178
           PGQVLRYEDNFDS SNV+V++T TDKKSITDYGSPEEFLS+VDYLLGKQA+ G+T +EGG
Sbjct: 119 PGQVLRYEDNFDSTSNVAVMVTATDKKSITDYGSPEEFLSQVDYLLGKQAFFGQTDAEGG 178

Query: 179 FDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQ 234
           FD +AVATANILE+S        YY L+VLTRTADGDEGGKHQLI ATVK GKLYICKAQ
Sbjct: 179 FDSNAVATANILESSTPVIDGKQYYSLTVLTRTADGDEGGKHQLIAATVKDGKLYICKAQ 238

Query: 235 AGDKRWFKGTRKYVESTASSFSVA 258
           AGDKRWFKG R++VESTASSFSVA
Sbjct: 239 AGDKRWFKGARRFVESTASSFSVA 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501429|ref|XP_003519527.1| PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/262 (79%), Positives = 229/262 (87%), Gaps = 8/262 (3%)

Query: 1   MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTV 60
           MASTQCFLHHHAL TTPAR S SQR + + KP Q+VC+AQKQ  ++ D S +SRRLALTV
Sbjct: 1   MASTQCFLHHHAL-TTPAR-SPSQRIMVSTKPNQLVCKAQKQ--EDIDVSPISRRLALTV 56

Query: 61  LIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPG 120
           LIGAAAVGSKV PADAAYGE+ANVFGKPKT+TDFLPYNGDGFKLSIPSKWNPSKE E+ G
Sbjct: 57  LIGAAAVGSKVQPADAAYGEAANVFGKPKTDTDFLPYNGDGFKLSIPSKWNPSKEVEYTG 116

Query: 121 QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD 180
           QV+RYEDNFDS +NV V ITPTDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T +EGGFD
Sbjct: 117 QVVRYEDNFDSTTNVVVTITPTDKKSITDYGSPEEFLSKVDYLLGKQAFFGETQAEGGFD 176

Query: 181 PDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAG 236
           P+AVATANILE +       PYYFLSVLTRTADGDEGGKH +I ATVK GKL+ICKAQAG
Sbjct: 177 PNAVATANILETATPVIDGKPYYFLSVLTRTADGDEGGKHHIIRATVKDGKLFICKAQAG 236

Query: 237 DKRWFKGTRKYVESTASSFSVA 258
           DKRWFKG R++VES ASSFSVA
Sbjct: 237 DKRWFKGARRFVESAASSFSVA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2033087	263	PSBP-1 "photosystem II subunit	0.992	0.973	0.769	3.1e-106

TAIR|locus:2033087 PSBP-1 "photosystem II subunit P-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 204/265 (76%), Positives = 235/265 (88%)

Query:     1 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
             MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    EDD SAVSRRLA
Sbjct:     1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLA 58

Query:    58 LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
             LT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E
Sbjct:    59 LTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIE 118

Query:   118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
             +PGQVLR+EDNFD+ SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEG
Sbjct:   119 YPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEG 178

Query:   178 GFDPDAVATANILEASVRP----PYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKA 233
             GFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKA
Sbjct:   179 GFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKA 238

Query:   234 QAGDKRWFKGTRKYVESTASSFSVA 258
             QAGDKRWFKG RK+VES A+SFSVA
Sbjct:   239 QAGDKRWFKGARKFVESAATSFSVA 263


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.370    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      258       258   0.00087  114 3  11 23  0.39    34
                                                     32  0.48    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  185 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.71u 0.09s 21.80t   Elapsed:  00:00:01
  Total cpu time:  21.71u 0.09s 21.80t   Elapsed:  00:00:01
  Start:  Thu May  9 15:13:57 2013   End:  Thu May  9 15:13:58 2013

GO:0005509 "calcium ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA

GO:0009654 "oxygen evolving complex" evidence=ISS

GO:0015979 "photosynthesis" evidence=IEA

GO:0030095 "chloroplast photosystem II" evidence=ISS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0019898 "extrinsic to membrane" evidence=TAS

GO:0031977 "thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0008266 "poly(U) RNA binding" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA;TAS

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96334	PSBP_BRAJU	No assigned EC number	0.7788	0.8255	0.9815	N/A	no
P11594	PSBP_SINAL	No assigned EC number	0.7132	0.9806	0.9730	N/A	no
P93566	PSBP_SOLTU	No assigned EC number	0.7709	0.9806	0.9730	N/A	no
P12302	PSBP_SPIOL	No assigned EC number	0.7415	1.0	0.9662	N/A	no
P29795	PSBP_SOLLC	No assigned EC number	0.7689	0.9651	0.9651	N/A	no
P85189	PSBP_HELAN	No assigned EC number	0.7052	0.9806	0.9619	N/A	no
Q42029	PSBP1_ARATH	No assigned EC number	0.7698	0.9922	0.9733	yes	no
Q9SLQ8	PSBP_CUCSA	No assigned EC number	0.8143	0.9961	0.9771	N/A	no
Q04127	PSBP3_TOBAC	No assigned EC number	0.7415	0.9961	0.9661	N/A	no
Q40407	PSBP_NARPS	No assigned EC number	0.6692	0.9379	0.9132	N/A	no
P11471	PSBP_CHLRE	No assigned EC number	0.5133	0.9224	0.9714	N/A	no
P16059	PSBP_PEA	No assigned EC number	0.7824	0.9883	0.9845	N/A	no
Q00434	PSBP_WHEAT	No assigned EC number	0.6628	0.9767	0.9767	N/A	no
O49080	PSBP_FRIAG	No assigned EC number	0.7396	0.9961	0.9734	N/A	no
Q7DM39	PSBP1_TOBAC	No assigned EC number	0.7798	1.0	0.9626	N/A	no
P18212	PSBP2_TOBAC	No assigned EC number	0.7706	0.9961	0.9698	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_V1224	SubName- Full=Putative uncharacterized protein; (262 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_V3745	SubName- Full=Putative uncharacterized protein; (331 aa)			•	•			•		0.606
	estExt_fgenesh4_kg.C_LG_VII0034	SubName- Full=Putative uncharacterized protein; (332 aa)			•	•			•		0.584
	gw1.XIII.568.1	SubName- Full=Putative uncharacterized protein; (212 aa)			•				•		0.524
	gw1.131.248.1	hypothetical protein (212 aa)			•				•		0.523
	grail3.0037013703	hypothetical protein (146 aa)			•	•					0.523
	gw1.II.1221.1	hypothetical protein (155 aa)			•	•					0.520
	estExt_fgenesh4_pg.C_LG_I1397	SubName- Full=Putative uncharacterized protein; (146 aa)			•	•					0.520
	estExt_Genewise1_v1.C_LG_XIV1543	SubName- Full=Putative uncharacterized protein; (151 aa)			•	•					0.519
	eugene3.00130190	SubName- Full=Putative uncharacterized protein; (339 aa)			•	•					0.507
	estExt_fgenesh4_pg.C_LG_VIII1474	SubName- Full=Putative uncharacterized protein; (287 aa)			•	•					0.507

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PLN00042	260	PLN00042, PLN00042, photosystem II oxygen-evolving	1e-164
pfam01789	163	pfam01789, PsbP, PsbP	4e-57
PLN00066	262	PLN00066, PLN00066, PsbP domain-containing protein	5e-05

>gnl|CDD|177676 PLN00042, PLN00042, photosystem II oxygen-evolving enhancer protein 2; Provisional

 Score =  455 bits (1172), Expect = e-164
 Identities = 201/265 (75%), Positives = 223/265 (84%), Gaps = 12/265 (4%)

Query: 1   MASTQCFLHHHALSTTPARTSS---SQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLA 57
           MAST CFLH  AL +  A  SS   S R VS  +P+Q+VCRAQ     E+D SAVSRR A
Sbjct: 1   MASTACFLHQSALKSAAALASSSSASARAVSASRPSQVVCRAQ-----EEDNSAVSRRAA 55

Query: 58  LTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKERE 117
           L +L GAAA G+KVSPA+AAYGESANVFGKPKTNT FLPYNGDGFKL +PSKWNPSKERE
Sbjct: 56  LALLAGAAAAGAKVSPANAAYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKERE 115

Query: 118 FPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG 177
           FPGQVLR+EDNFD+ SN+SV++TPTDKKSITDYGSPEEFLSKV YLLGKQAYSG+T+SEG
Sbjct: 116 FPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEFLSKVSYLLGKQAYSGETASEG 175

Query: 178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKA 233
           GFD +AVATA +LE+S +     PYY+LSVLTRTADGDEGGKHQLITATV  GKLYICKA
Sbjct: 176 GFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICKA 235

Query: 234 QAGDKRWFKGTRKYVESTASSFSVA 258
           QAGDKRWFKG RK+VE  ASSFSVA
Sbjct: 236 QAGDKRWFKGARKFVEGAASSFSVA 260

Length = 260

>gnl|CDD|216701 pfam01789, PsbP, PsbP

 Score =  179 bits (456), Expect = 4e-57
 Identities = 72/181 (39%), Positives = 91/181 (50%), Gaps = 25/181 (13%)

Query: 85  FGKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT 142
             K KTN  F  Y    DG++   P+ W   +E    G  + + D  +S+ NVSV+I+P 
Sbjct: 1   ACKAKTNAGFQAYVDTDDGYEFLYPTGW--WREVVSDGPDVVFHDLIESDENVSVVISPV 58

Query: 143 DKK-SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----P 197
           DKK S+ D GSPEE         G++   G  + EG         A +LEAS R      
Sbjct: 59  DKKKSLEDLGSPEEV--------GERLLRGVLAPEGSG-----REAELLEASEREVDGKT 105

Query: 198 YYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 257
           YY L  L R ADG  G +H+L T TV  GKLY   AQ  +KRWFK  +K  E    SFSV
Sbjct: 106 YYDLEYLVRLADG--GDRHELATVTVDRGKLYTLAAQTNEKRWFK-VKKLFERVVDSFSV 162

Query: 258 A 258
           A
Sbjct: 163 A 163

This family consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria. The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+. Length = 163

>gnl|CDD|215046 PLN00066, PLN00066, PsbP domain-containing protein 4; Provisional

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 65/276 (23%), Positives = 96/276 (34%), Gaps = 69/276 (25%)

Query: 20  TSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYG 79
            S S R  S    T    R   +   ED  +AVSRR AL     AA+      P +    
Sbjct: 14  PSRSSRVHSRPACTNRAVRIADEE-TEDVATAVSRRSALASGAAAASSAVLAFPGEGLAV 72

Query: 80  E----SANVFGKPKTNTD-FLPYN-------GDG--------FKLSIPSKWNPSKEREFP 119
           +    +  V G  + + + +  Y        G G        +   +P  W      E P
Sbjct: 73  KQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWE-----EVP 127

Query: 120 GQV---------LRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVD- 161
             +         LR+    D    + V++ P         D  +I + G PE+ +S    
Sbjct: 128 VSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGP 185

Query: 162 YLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITA 221
            L+G+    GK           V +  + E S R  Y F           E   H L+TA
Sbjct: 186 ELIGEPVEEGK-----------VLSMEVAEHSGRTYYQF-----------ELPPHTLVTA 223

Query: 222 TVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 257
           T  G ++YI    A   +W K   K ++  A SF V
Sbjct: 224 TAAGNRVYIFSVTANGLQW-KRHYKDLKRIAKSFRV 258

Length = 262

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PLN00042	260	photosystem II oxygen-evolving enhancer protein 2;	100.0
PLN00059	286	PsbP domain-containing protein 1; Provisional	100.0
PLN00067	263	PsbP domain-containing protein 6; Provisional	100.0
PF01789	175	PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynt	100.0
PLN00066	262	PsbP domain-containing protein 4; Provisional	100.0
PLN03152	241	hypothetical protein; Provisional	99.95
PF08786	130	DUF1795: Domain of unknown function (DUF1795); Int	97.14
PF07174	297	FAP: Fibronectin-attachment protein (FAP); InterPr	90.59
PRK11615	185	hypothetical protein; Provisional	88.11
COG5435	147	Uncharacterized conserved protein [Function unknow	86.92

>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional

Probab=100.00  E-value=3.8e-79  Score=545.08  Aligned_cols=252  Identities=78%  Similarity=1.208  Sum_probs=238.4

Q ss_pred             CcchhhhhhccccCCCccccc----ccccccCCCCCceeeeccccccccccCCccchhHHHHHHHHHHHhhccCCCcchh
Q 025092            1 MASTQCFLHHHALSTTPARTS----SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADA   76 (258)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~RR~~L~~~a~aaa~~~~~~pa~A   76 (258)
                      ||||+||||||+++++. +.+    +++|.....++++++|++|++.     .+.++||.+|+++++++++++.+.|+.|
T Consensus         1 ~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~srr~~l~~~~ga~a~~~~~~pa~a   74 (260)
T PLN00042          1 MASTACFLHQSALKSAA-ALASSSSASARAVSASRPSQVVCRAQEED-----NSAVSRRAALALLAGAAAAGAKVSPANA   74 (260)
T ss_pred             Ccchhhhhhcccccchh-hhcccccccccccCCCCCcceeeeccccc-----cccccHHHHHHHHHHHHHhhcccCchhh
Confidence            99999999999995443 332    4688899999999999999773     3468999999999999888999999999


Q ss_pred             hccccccccCCCCCCCCceeccCCceEEecCCCCccCccccCCCceEEeecCCCCCCcEEEEEecCCCCccccCCChHHH
Q 025092           77 AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEF  156 (258)
Q Consensus        77 a~ge~a~~f~~p~~~~~f~~y~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~~~nVsV~v~p~~~~sI~d~Gspeev  156 (258)
                      +|||+||+||+||+++||++|++|||+|+||++|++++|.+++|+|++|+|+++.++||+|+|+|+++++|+|||+||||
T Consensus        75 ay~~~anvfg~~k~~~gF~~y~~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~k~sI~dlGsPee~  154 (260)
T PLN00042         75 AYGESANVFGKPKTNTGFLPYNGDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTDKKSITDYGSPEEF  154 (260)
T ss_pred             hhcchhhccCCCCCCCCCeEeeCCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCCcCCHhhcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEE
Q 025092          157 LSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICK  232 (258)
Q Consensus       157 a~~v~~~L~~~~~~~~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~  232 (258)
                      +++|+++|+++++.++|.+|+||+||++++++||++++|    ++||+|||.++++||||++||+|+++||+|||||||+
T Consensus       155 l~~vgylL~kq~~a~~t~s~~Gf~p~~vata~Lleas~re~dGk~YY~lE~~~~~ad~d~~~RH~LatatV~~GkLYtl~  234 (260)
T PLN00042        155 LSKVSYLLGKQAYSGETASEGGFDANAVATAAVLESSTQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVSDGKLYICK  234 (260)
T ss_pred             HHHHHHHHHhhhccCccccccCcCcccccceeEEEeeeEEeCCeEEEEEEEEEecCCCCCCCceEEEEEEEECCEEEEEE
Confidence            999999999999999999999999999999999999998    9999999999999999999999999999999999999


Q ss_pred             eEeccccccchhHHHHHHHhhccccC
Q 025092          233 AQAGDKRWFKGTRKYVESTASSFSVA  258 (258)
Q Consensus       233 ~qa~e~rW~k~~~~~l~~vv~SF~V~  258 (258)
                      +|+||+||+|+.+++|++|++||+||
T Consensus       235 aqa~EkRW~K~~~k~l~~v~~SFsVa  260 (260)
T PLN00042        235 AQAGDKRWFKGARKFVEGAASSFSVA  260 (260)
T ss_pred             ecCchhhhhHHHHHHHHHHHhceecC
Confidence            99999999998777799999999997

>PLN00059 PsbP domain-containing protein 1; Provisional

Probab=100.00  E-value=4.2e-44  Score=319.34  Aligned_cols=203  Identities=24%  Similarity=0.312  Sum_probs=157.9

Q ss_pred             cCCCCCceeeeccccccccccCCccchhHHHHHHHH-HHHhhccCCCcchhhccccccccCCCCCCCCceecc--CCceE
Q 025092           27 VSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLI-GAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYN--GDGFK  103 (258)
Q Consensus        27 ~~~~~~~~~~c~~~~~~~~~~~~~~~~RR~~L~~~a-~aaa~~~~~~pa~Aa~ge~a~~f~~p~~~~~f~~y~--~dgYs  103 (258)
                      ..+-+|-.+.|..+...     ..+++||.+|+..+ .+..+.+.+        .....|+.|+   ||+.|.  .|||+
T Consensus        57 ~~~~~~~~~~~~~~~~~-----~~~~~rr~~~~~~l~~~~~~~s~~--------~~~~a~a~~~---~l~~y~D~~DGY~  120 (286)
T PLN00059         57 AKPDSPVAINCLTDAKQ-----VCAVGRRKSMMMGLLMSGLIVSEA--------NLPTAFASIP---VFREYIDTFDGYS  120 (286)
T ss_pred             cCCCCCeeeecccchhh-----hhhhhhhhhhHHHHHHHHHHHHhh--------cCchhhcCCc---ccceeEcCCCCeE
Confidence            34455566788888331     34799999965333 222221111        1112233443   566665  89999


Q ss_pred             EecCCCCccCccccCCCceEEeecCCCCCCcEEEEEecC---CCCccccCCChHHHHHHHHHHHHhhhhcCCCCCCCCCC
Q 025092          104 LSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPT---DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFD  180 (258)
Q Consensus       104 f~yP~~W~~~~e~~~~G~dv~f~d~~~~~~nVsV~v~p~---~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s~~g~~  180 (258)
                      |+||.||++++   ..|+|++|+|+++.+|||+|+|+|+   ++++|+|||+|+|    ||++|.+++++++   ++++ 
T Consensus       121 FlYP~GWi~V~---~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~sLeDLGsP~e----VgerLlkqvLa~f---~str-  189 (286)
T PLN00059        121 FKYPQNWIQVR---GAGADIFFRDPVVLDENLSVEFSSPSSSKYTSLEDLGSPEE----VGKRVLRQYLTEF---MSTR-  189 (286)
T ss_pred             EeCCCCCeEec---cCCCceEEeccCccccceEEEEecCCcccCCChHHcCCHHH----HHHHHHHHHhccc---cccc-
Confidence            99999998655   4699999999999999999999988   4899999999999    8889999999875   2222 


Q ss_pred             ccccccceeeecccC-----CCeEEEEEEEEcCC---------C-----CCCcceEEEEEEEeCCEEEEEEeEecccccc
Q 025092          181 PDAVATANILEASVR-----PPYYFLSVLTRTAD---------G-----DEGGKHQLITATVKGGKLYICKAQAGDKRWF  241 (258)
Q Consensus       181 ~~~v~~a~ll~a~~r-----~~YY~~Ey~~~~~~---------g-----~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~  241 (258)
                      +|.-++++||++++|     ++||+|||.+++++         .     .||.||+|++++|.|||||||++|+||+||.
T Consensus       190 ~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~RH~LA~v~V~nGkLYTL~~qtpE~RW~  269 (286)
T PLN00059        190 LGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQTPEKVFL  269 (286)
T ss_pred             CCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccceeeEEEEEEeCCEEEEEEcCCcHHHHH
Confidence            232238999999987     99999999999962         2     2689999999999999999999999999999


Q ss_pred             chhHHHHHHHhhcccc
Q 025092          242 KGTRKYVESTASSFSV  257 (258)
Q Consensus       242 k~~~~~l~~vv~SF~V  257 (258)
                      |+++. |++|++||+|
T Consensus       270 kvk~~-f~~V~dSF~V  284 (286)
T PLN00059        270 EEEKD-LRRVMDSFRV  284 (286)
T ss_pred             HHHHH-HHHHHhheee
Confidence            98886 9999999998

>PLN00067 PsbP domain-containing protein 6; Provisional

Probab=100.00  E-value=1.9e-41  Score=302.33  Aligned_cols=185  Identities=25%  Similarity=0.437  Sum_probs=143.9

Q ss_pred             cchhHHHHHHHHHHHhhcc-CCCcchhhccccccccCCC-CCCCCceecc-------------CCceEEecCCCCccCcc
Q 025092           51 AVSRRLALTVLIGAAAVGS-KVSPADAAYGESANVFGKP-KTNTDFLPYN-------------GDGFKLSIPSKWNPSKE  115 (258)
Q Consensus        51 ~~~RR~~L~~~a~aaa~~~-~~~pa~Aa~ge~a~~f~~p-~~~~~f~~y~-------------~dgYsf~yP~~W~~~~e  115 (258)
                      .+.||++|.+++.+.++.. ...|+.|...|. +.|-.| .+.+||..|.             ..||+|+||.+|+++++
T Consensus        42 ~~~rr~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~lp~~~~~~~~~~f~~~~~~tpalra~~i~gY~FlyP~gW~~v~V  120 (263)
T PLN00067         42 VIHRRELLLGLALAPLILIAPEPPAEAREVEV-GSYLPPSPSDPSFVLFKASPKDTPALRAGNVQPYQFILPPTWKQTRV  120 (263)
T ss_pred             hhHHHHHHhhhhhhhhhhccCCchhhhheehh-hcccCCCCCCCceEEEecCCCCCcccccCCcccceEeCCCCCcCccc
Confidence            5789999988877644332 233444433332 222211 1345666555             57999999999999988


Q ss_pred             cc------------CCCceEEeecCCCCCCcEEEEEecC------CCCccccCCChHHHHHHHHHHHHhhhhcCCCCCCC
Q 025092          116 RE------------FPGQVLRYEDNFDSNSNVSVIITPT------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEG  177 (258)
Q Consensus       116 ~~------------~~G~dv~f~d~~~~~~nVsV~v~p~------~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s~~  177 (258)
                      .+            .+|+|++|+|++  ++||+|+|+|+      ++++|+|||+|++|+++    |++.+..+      
T Consensus       121 s~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~----Lg~~v~g~------  188 (263)
T PLN00067        121 ANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIAS----LGPFVTGN------  188 (263)
T ss_pred             cccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHH----hhHHhhcC------
Confidence            64            345999999965  67999999998      56899999999996655    55555542      


Q ss_pred             CCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHHHhh
Q 025092          178 GFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTAS  253 (258)
Q Consensus       178 g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~vv~  253 (258)
                      ++     +.++||+++++    ++||+|||.+++++   ++||+|+++||++||||||++|++|+||+|+++. |++|++
T Consensus       189 ~~-----~~~eLLeAs~re~dGktYY~~E~~tp~a~---~gRHnLataTV~~GkLYtf~asanEkRW~K~k~~-l~~V~d  259 (263)
T PLN00067        189 SY-----DPDELLETSVEKIGDQTYYKYVLETPFAL---TGSHNLAKATAKGNTVVLFVVSASDKQWQSSEKT-LKAILD  259 (263)
T ss_pred             CC-----CCcceEEeeeEeeCCeEEEEEEEEecCCC---CCceEEEEEEEECCEEEEEEecCCHHHHHHHHHH-HHHHHH
Confidence            22     25689999998    99999999999998   6899999999999999999999999999998775 999999


Q ss_pred             cccc
Q 025092          254 SFSV  257 (258)
Q Consensus       254 SF~V  257 (258)
                      ||+|
T Consensus       260 SFsV  263 (263)
T PLN00067        260 SFQA  263 (263)
T ss_pred             hccC
Confidence            9987

>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae

Probab=100.00  E-value=8.3e-39  Score=273.51  Aligned_cols=154  Identities=36%  Similarity=0.605  Sum_probs=127.8

Q ss_pred             CCCCCCCCceec--cCCceEEecCCCCccCccccCCCceEEeecCCCCCCcEEEEEecCCCC-ccccCCChHHHHHHHHH
Q 025092           86 GKPKTNTDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK-SITDYGSPEEFLSKVDY  162 (258)
Q Consensus        86 ~~p~~~~~f~~y--~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~~~nVsV~v~p~~~~-sI~d~Gspeeva~~v~~  162 (258)
                      +.++...||.+|  ..+||+|.||++|+   +.+..|++++|+|+++..+||+|+|+|+... +|+|||+|++    +++
T Consensus        15 ~~~~~~~~~~~y~d~~~~y~f~~P~gW~---~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~~~sl~~lGs~~~----va~   87 (175)
T PF01789_consen   15 CAAEASTGFQPYTDSDDGYSFLYPSGWE---EVDVSGADVVFRDPIDADENVSVVVSPVPKDFSLEDLGSPEE----VAE   87 (175)
T ss_dssp             -STT--SSEEEEEECTTTEEEEEETTEE---EEESTTEEEEEEETTETTSEEEEEEEE-STS-SGGGG-SHHH----HHH
T ss_pred             hcccCCCCceEEEcCCCCEEEECCCCCe---ecCCCCeEEEEECcccccceEEEEEEecCCcCchhhcCCHHH----HHH
Confidence            344467899999  58999999999996   4444899999999999999999999999554 9999999999    455


Q ss_pred             HHHhhhhcCCCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccc
Q 025092          163 LLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDK  238 (258)
Q Consensus       163 ~L~~~~~~~~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~  238 (258)
                      .|.+..+..+   +++      +.++||++.++    ++||+|||.+++++  ++.||+|++++++|||||+|++|++|+
T Consensus        88 ~l~~~~~~~~---~~~------~~a~li~a~~~~~~g~~yY~~Ey~~~~~~--~~~rh~l~~~tv~~g~lY~l~~~a~e~  156 (175)
T PF01789_consen   88 RLLNGELASP---GSG------REAELISASEREVDGKTYYEYEYTVQSPN--EGRRHNLAVVTVKNGKLYTLTAQAPES  156 (175)
T ss_dssp             HHHHHCCCHC---TSS------EEEEEEEEEEEEETTEEEEEEEEEEEETT--EEEEEEEEEEEEETTEEEEEEEEEEHH
T ss_pred             HHhhhhcccc---cCC------cceEEEEeeeeecCCccEEEEEEEeccCC--CcccEEEEEEEEECCEEEEEEEEcCHH
Confidence            5766655543   222      48899999998    89999999999987  468999999999999999999999999


Q ss_pred             cccchhHHHHHHHhhccccC
Q 025092          239 RWFKGTRKYVESTASSFSVA  258 (258)
Q Consensus       239 rW~k~~~~~l~~vv~SF~V~  258 (258)
                      ||+|++++ |++|++||+|+
T Consensus       157 ~w~k~~~~-l~~iv~SF~v~  175 (175)
T PF01789_consen  157 RWDKVEPK-LRKIVDSFRVY  175 (175)
T ss_dssp             HHHTCHHH-HHHHHHC-EE-
T ss_pred             HHHHHHHH-HHHHHhcEEeC
Confidence            99998886 99999999985

Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.

>PLN00066 PsbP domain-containing protein 4; Provisional

Probab=100.00  E-value=1.2e-37  Score=280.14  Aligned_cols=180  Identities=26%  Similarity=0.451  Sum_probs=143.6

Q ss_pred             CccchhHHHHHHHHHHHhhccCCCcch--hh-cccccccc---CCCCCCCCceeccC---------------CceEEecC
Q 025092           49 GSAVSRRLALTVLIGAAAVGSKVSPAD--AA-YGESANVF---GKPKTNTDFLPYNG---------------DGFKLSIP  107 (258)
Q Consensus        49 ~~~~~RR~~L~~~a~aaa~~~~~~pa~--Aa-~ge~a~~f---~~p~~~~~f~~y~~---------------dgYsf~yP  107 (258)
                      ...++||.+|+.++.++.++....|+.  |+ +|..|+..   +.| +..||+.|..               .+|+|+||
T Consensus        42 ~~~~~rr~~~~s~~~~~~~~~~~~~~~~~a~~~g~~ag~~~~~s~~-~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP  120 (262)
T PLN00066         42 ATAVSRRSALASGAAAASSAVLAFPGEGLAVKQGLLAGRVPGLSEP-DENGWRTYRRPEGKSGGHGVGWSEITPYSFKVP  120 (262)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhcCCcchhhhhhcccccCCCCCCCc-cccceEEEecCccccCcCCCCccccCCeEEECC
Confidence            457899999987665543333334544  44 89888764   555 5699999981               57999999


Q ss_pred             CCCccCcccc----CCCceEEeecCCCCCCcEEEEEecC--------CCCccccCCChHHHHHHHHHHHHhhhhcCCCCC
Q 025092          108 SKWNPSKERE----FPGQVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS  175 (258)
Q Consensus       108 ~~W~~~~e~~----~~G~dv~f~d~~~~~~nVsV~v~p~--------~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s  175 (258)
                      .+|+++.+.+    .+|+|++|.|  +.++||+|+|+|+        ++++|+|||+||+|++    .|+++++..+   
T Consensus       121 ~GW~ev~VS~~d~gg~~vd~Rf~~--~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~----~l~~~v~g~~---  191 (262)
T PLN00066        121 QGWEEVPVSIADLGGTEIDLRFAS--DKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVIS----GFGPELIGEP---  191 (262)
T ss_pred             CCCeEeecccccCCCCceEEEecc--CCCccEEEEEeccccccccccCCCChHHcCCHHHHHH----HHHHHhcCCC---
Confidence            9999877652    2446666666  5789999999998        6889999999999655    5666655432   


Q ss_pred             CCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHHH
Q 025092          176 EGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVEST  251 (258)
Q Consensus       176 ~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~v  251 (258)
                            .  ++++|++++++    ++||+|||     .     +|+|+++||.+||||+|++|+||+||+|++++ |++|
T Consensus       192 ------~--~e~eLl~a~~re~dGktYY~~E~-----~-----rH~LasaTV~~GrLYt~~asape~rW~k~~~~-lr~v  252 (262)
T PLN00066        192 ------V--EEGKVLSMEVAEHSGRTYYQFEL-----P-----PHTLVTATAAGNRVYIFSVTANGLQWKRHYKD-LKRI  252 (262)
T ss_pred             ------c--cccceeEeeeeecCCcEEEEEEE-----e-----CceEEEEEEECCEEEEEEeecchHhhHHHHHH-HHHH
Confidence                  1  36789999887    99999999     2     89999999999999999999999999998886 9999


Q ss_pred             hhcccc
Q 025092          252 ASSFSV  257 (258)
Q Consensus       252 v~SF~V  257 (258)
                      ++||+|
T Consensus       253 ~dSF~V  258 (262)
T PLN00066        253 AKSFRV  258 (262)
T ss_pred             hhceee
Confidence            999997

>PLN03152 hypothetical protein; Provisional

Probab=99.95  E-value=3e-28  Score=212.75  Aligned_cols=184  Identities=26%  Similarity=0.388  Sum_probs=126.3

Q ss_pred             cchhHHHHHHHHHH-HhhccCCCcchhhcccccc----ccCCCCCCCCceeccCCceEEecCCCCccCccccC--CC---
Q 025092           51 AVSRRLALTVLIGA-AAVGSKVSPADAAYGESAN----VFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREF--PG---  120 (258)
Q Consensus        51 ~~~RR~~L~~~a~a-aa~~~~~~pa~Aa~ge~a~----~f~~p~~~~~f~~y~~dgYsf~yP~~W~~~~e~~~--~G---  120 (258)
                      ..+||+.++-.+.+ +.....-.|..-..++..+    +.+...+...|..|.++||++.||.+|...-|.+-  .|   
T Consensus        30 ~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nt~~w~~~~g~gf~~~~pp~f~di~e~~~~~~g~~~  109 (241)
T PLN03152         30 GASRRDFILHTASLCASSLAAQNPLPPSLADPSKPSKPLLSGIANTKSWFQFYGDGFSIRVPPSFEDIMEPEDYNAGLSL  109 (241)
T ss_pred             cccccceeeehhHHHHhhhhcCCCCCccccCCCCCCCchheeeecchhhhhhhCCceEEeCCCChhhhcChhhcccccce
Confidence            45677776533322 1111222343333344322    12222367789999999999999999986655431  12   


Q ss_pred             ---------ceEEeecCCCCCCcEEEEEecC--------CCCccccCCChHHHHHHHHHHHHhhhhcCCCCCCCCCCccc
Q 025092          121 ---------QVLRYEDNFDSNSNVSVIITPT--------DKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDA  183 (258)
Q Consensus       121 ---------~dv~f~d~~~~~~nVsV~v~p~--------~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s~~g~~~~~  183 (258)
                               -..||.. .|.+|||||+|+|+        +.++|+|||+|+|    |++.|.     +.   ++.+-.+ 
T Consensus       110 yg~~akp~~~~aRf~s-~D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~E----Vgkv~v-----P~---g~~~~sa-  175 (241)
T PLN03152        110 YGDKAKPRTFAARFAS-PDGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKE----AAKIFV-----PG---GATLYSA-  175 (241)
T ss_pred             ecCCCCCcceeeeecC-CCCCceEEEEEecCccccccccccCChhHcCCHHH----HHHhhC-----CC---ccccccc-
Confidence                     2356665 37899999999997        7899999999999    554443     32   1101011 


Q ss_pred             cccceeeecccCCCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHHHhhcccc
Q 025092          184 VATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV  257 (258)
Q Consensus       184 v~~a~ll~a~~r~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~vv~SF~V  257 (258)
                       +.+++-+...-++||+|||.+.       +||+|++|+|.+||||||+++++|+||+|++++ |+++++||+|
T Consensus       176 -R~iel~~E~dGKtYY~lEy~v~-------~RH~LaTVaVsrGKLYTl~aSt~EkRW~Kvk~k-fr~aa~SFsV  240 (241)
T PLN03152        176 -RTIKVKEEEGIRTYYFYEFGRD-------EQHVALVATVNSGKAYIAGATAPESKWDDDGVK-LRSAAISLTV  240 (241)
T ss_pred             -ceeeeeeecCCceeEEEEEEeC-------CcEEEEEEEEcCCeEEEEecCCchhchHHHHHH-HHHHHhheee
Confidence             1334422111199999999973       499999999999999999999999999999998 9999999997

>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function

Probab=97.14  E-value=0.0056  Score=49.45  Aligned_cols=56  Identities=16%  Similarity=0.006  Sum_probs=44.8

Q ss_pred             CCeEEEEEEEEcCCCCCCcceEEEEEEEeC-CEEEEEEeEeccccccchhHHHHHHHhhcc
Q 025092          196 PPYYFLSVLTRTADGDEGGKHQLITATVKG-GKLYICKAQAGDKRWFKGTRKYVESTASSF  255 (258)
Q Consensus       196 ~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~-gkLYtl~~qa~e~rW~k~~~~~l~~vv~SF  255 (258)
                      .+-+.++|.-...+   ..-|+..++...+ ++||+++.+++....+..... ++.|++||
T Consensus        74 ~~a~~l~~~~~~~g---~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~-~~~i~~Sf  130 (130)
T PF08786_consen   74 RPARELEYSFRSGG---QPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAH-WEAILKSF  130 (130)
T ss_dssp             EEEEEEEEEEEETT---CEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHH-HHHHHCT-
T ss_pred             CCeEEEEEEEeeCC---EEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHH-HHHHHhcC
Confidence            45566666665444   5688888888887 999999999999999987774 99999998

It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.

>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP)

Probab=90.59  E-value=5.1  Score=37.14  Aligned_cols=142  Identities=15%  Similarity=0.177  Sum_probs=65.8

Q ss_pred             ceecc-CCceEEecCCCCccCccccC-CCceEEeecCCCC---------CCcEEEEEecCCCCccccC-CChHHHHHHHH
Q 025092           94 FLPYN-GDGFKLSIPSKWNPSKEREF-PGQVLRYEDNFDS---------NSNVSVIITPTDKKSITDY-GSPEEFLSKVD  161 (258)
Q Consensus        94 f~~y~-~dgYsf~yP~~W~~~~e~~~-~G~dv~f~d~~~~---------~~nVsV~v~p~~~~sI~d~-Gspeeva~~v~  161 (258)
                      .+-++ ..||+|.+|.||+.+..... .|+.+.-+-..++         .+.-+|++..+|.+=...- -+-...+-.++
T Consensus       110 grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~dn~kaa~rl~  189 (297)
T PF07174_consen  110 GRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEPDNTKAAVRLA  189 (297)
T ss_pred             ccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccCChHHHHHHHh
Confidence            34334 67999999999986554332 4665554422211         1233455555433222111 01122222233


Q ss_pred             HHHHhhhhcCCCCCCCCCCccccccceeeecccC---CCeEEEEEEEEc-CCCCCCcceEEEEEEE---------eCCEE
Q 025092          162 YLLGKQAYSGKTSSEGGFDPDAVATANILEASVR---PPYYFLSVLTRT-ADGDEGGKHQLITATV---------KGGKL  228 (258)
Q Consensus       162 ~~L~~~~~~~~t~s~~g~~~~~v~~a~ll~a~~r---~~YY~~Ey~~~~-~~g~e~~rH~L~~~tv---------~~gkL  228 (258)
                      ..+++++.- .   .|+| .|+  +...|++.-.   ..||...|.=.. ++    +.-.-.+++.         ..-|-
T Consensus       190 sdmgeffmp-~---pg~r-inq--~~~~l~~~g~~g~asyyevkf~d~~kp~----gqiw~~vvg~p~~~~~~~~~~~rw  258 (297)
T PF07174_consen  190 SDMGEFFMP-Y---PGTR-INQ--ETTPLDANGMPGSASYYEVKFTDANKPN----GQIWAGVVGSPVAPGTPRGTPQRW  258 (297)
T ss_pred             ccccceecc-C---CCcc-ccc--cccccccCCcccceeEEEEEeccCCCCC----CceEEEeecCcCCCCCCCCCCceE
Confidence            333333322 1   2333 554  4456665544   667766665211 22    2222233332         11266


Q ss_pred             EEEEeEeccccccchhHH
Q 025092          229 YICKAQAGDKRWFKGTRK  246 (258)
Q Consensus       229 Ytl~~qa~e~rW~k~~~~  246 (258)
                      |.+=+.....--+|.+.+
T Consensus       259 fvvwlgt~~~pvd~~~a~  276 (297)
T PF07174_consen  259 FVVWLGTANNPVDKGAAK  276 (297)
T ss_pred             EEEEecCCCCCCCHHHHH
Confidence            666666665555665444

Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region

>PRK11615 hypothetical protein; Provisional

Probab=88.11  E-value=17  Score=31.73  Aligned_cols=132  Identities=12%  Similarity=0.148  Sum_probs=80.2

Q ss_pred             CCceEEecCCCCccCcccc-CCC-ceEEeecCCCCCCcEEEEEecCCCCccccCCChHHHHHHHHHHHHhhhhcCCCCCC
Q 025092           99 GDGFKLSIPSKWNPSKERE-FPG-QVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSE  176 (258)
Q Consensus        99 ~dgYsf~yP~~W~~~~e~~-~~G-~dv~f~d~~~~~~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s~  176 (258)
                      +.+.+|.+|.++....... ..+ .--+|-|+  ....+ |+|++-|        .+.++++.++.+|..+--.      
T Consensus        47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~--tg~ka-vIVi~gD--------~~~~~Ld~la~rl~~qQr~------  109 (185)
T PRK11615         47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADA--TGQKA-VIVILGD--------DTNEDLAVLAKRLEDQQRS------  109 (185)
T ss_pred             ccEEEEEcCCccccccccccccccceEEEEcC--CCCEE-EEEEeCC--------CChhhHHHHHHHHHHHHHh------
Confidence            7789999999997332111 111 23477774  23333 3333211        3345556677788776433      


Q ss_pred             CCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHHHh
Q 025092          177 GGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTA  252 (258)
Q Consensus       177 ~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~vv  252 (258)
                        ++|+.    .++..+..    +.++.++-.+...+   ..--+-++++..|+||-+|.+..|.+.-.+.... .+.|+
T Consensus       110 --rdp~l----qvvsnK~i~i~G~~~qQLDS~~t~~G---qk~~SSvvL~~v~~rl~tlQitlpA~nqqqaq~~-ae~ii  179 (185)
T PRK11615        110 --RDPQL----QVVTNKAIELKGHKLQQLDSIISAKG---QTAYSSVVLGKVDNQLLTMQITLPADNQQQAQTT-AENII  179 (185)
T ss_pred             --hCcCc----eeecceeEEECCeeeEEeeeeeecCC---ceEEEEEEEEeeCCeEEEEEEecCCCCHHHHHHH-HHHHH
Confidence              24552    23333322    77788887755443   2233444566679999999999999887776664 89999


Q ss_pred             hcccc
Q 025092          253 SSFSV  257 (258)
Q Consensus       253 ~SF~V  257 (258)
                      ++..+
T Consensus       180 ~tl~~  184 (185)
T PRK11615        180 NTLVI  184 (185)
T ss_pred             hheec
Confidence            88765

>COG5435 Uncharacterized conserved protein [Function unknown]

Probab=86.92  E-value=11  Score=31.84  Aligned_cols=66  Identities=15%  Similarity=0.063  Sum_probs=43.0

Q ss_pred             cceeeecccCCCeEEEEEEEEcCCCCCCcceEEEEEEE-eCCEEEEEEeEeccccccchhHHHHHHHhhcccc
Q 025092          186 TANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATV-KGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV  257 (258)
Q Consensus       186 ~a~ll~a~~r~~YY~~Ey~~~~~~g~e~~rH~L~~~tv-~~gkLYtl~~qa~e~rW~k~~~~~l~~vv~SF~V  257 (258)
                      ++++-.......+|.+-+.   +.  |+++-....+.+ .++++-+++++++-.-=++ .++...+++.||..
T Consensus        75 e~~v~~~aa~~~~y~w~~~---~~--~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~-q~~~~~~~I~Sf~p  141 (147)
T COG5435          75 EIEVGGAAAPLLDYQWTSP---EG--EQRRVQQRQVFIERGDTVLIFTLTTPGEFTPS-QKKAWEQVIQSFVP  141 (147)
T ss_pred             ccccCccccceeEEEeecC---CC--CCceEEEEEeecccCCeEEEEEecCCCCCCHH-HHHHHHHHHHhcCC
Confidence            3333333344666776664   22  245554455555 5779999999998777676 44469999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
2vu4_A	190	Structure Of Psbp Protein From Spinacia Oleracea At		4e-83
1v2b_A	177	Crystal Structure Of Psbp Protein In The Oxygen-Evo		4e-78
2xb3_A	165	The Structure Of Cyanobacterial Psbp Length = 165		9e-06

>pdb|2VU4|A Chain A, Structure Of Psbp Protein From Spinacia Oleracea At 1.98 A Resolution Length = 190

Iteration: 1
 Score =  304 bits (778), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/186 (76%), Positives = 163/186 (87%), Gaps = 4/186 (2%)
Query: 77  AYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVS 136
           AYGE+ANVFGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD+ SN+S
Sbjct: 5   AYGEAANVFGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLS 64
Query: 137 VIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV-- 194
           V++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S   
Sbjct: 65  VLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPV 124
Query: 195 --RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTA 252
                YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKG +K+VES  
Sbjct: 125 VDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESAT 184
Query: 253 SSFSVA 258
           SSFSVA
Sbjct: 185 SSFSVA 190

>pdb|1V2B|A Chain A, Crystal Structure Of Psbp Protein In The Oxygen-Evolving Complex Of Photosystem Ii From Higher Plants Length = 177

Iteration: 1
 Score =  287 bits (734), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 155/177 (87%), Gaps = 4/177 (2%)
Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60
Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFL 201
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+L
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYL 120
Query: 202 SVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 258
           S+LTRTADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 SILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp Length = 165

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 13/160 (8%)
Query: 100 DGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVII-TPTDKKSITDYGSPEEFLS 158
           DG++   P  W    + E P  V+ + D  ++  NVSV++ T    KS+ + GSPEE   
Sbjct: 16  DGYEFLYPRGW-VQVQVEDPVDVV-FHDIIETTENVSVVVNTVASTKSLEELGSPEEVGD 73
Query: 159 KVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGG-KHQ 217
           ++   +   + SG++S        A+  A   +A  +  Y     +T   DG+    +H 
Sbjct: 74  RLLRNIIAPSESGRSS--------ALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHN 125
Query: 218 LITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 257
           L +  V  GK+Y     A ++RW K   ++ ++  SSF+V
Sbjct: 126 LSSIAVSRGKVYTLSVSAPEERWPKVEDQF-KTIVSSFTV 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
2vu4_A	273	Oxygen-evolving enhancer protein 2; kDa protein, t	2e-90
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	2e-66
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	1e-28
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	2e-27

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2 Length = 177

 Score =  203 bits (516), Expect = 2e-66
 Identities = 135/177 (76%), Positives = 155/177 (87%), Gaps = 4/177 (2%)

Query: 86  GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKK 145
           GKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKK
Sbjct: 1   GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKK 60

Query: 146 SITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFL 201
           SITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+L
Sbjct: 61  SITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYL 120

Query: 202 SVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 258
           S+LTRTADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 SILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 177

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus} Length = 165

 Score =  106 bits (264), Expect = 1e-28
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 25/175 (14%)

Query: 92  TDFLPY--NGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITP-TDKKSIT 148
           +    Y  + DG++   P  W   +  +       + D  ++  NVSV++      KS+ 
Sbjct: 6   SGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV--VFHDIIETTENVSVVVNTVASTKSLE 63

Query: 149 DYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLS-V 203
           + GSPEE   ++   +   + SG++             + ++ A+ +      YY L   
Sbjct: 64  ELGSPEEVGDRLLRNIIAPSESGRS-------------SALIAATSQKADDKTYYILEYA 110

Query: 204 LTRTADGDEGG-KHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 257
           +T   DG+    +H L +  V  GK+Y     A ++RW K      ++  SSF+V
Sbjct: 111 VTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKV-EDQFKTIVSSFTV 164

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP} Length = 170

 Score =  103 bits (256), Expect = 2e-27
 Identities = 41/166 (24%), Positives = 63/166 (37%), Gaps = 22/166 (13%)

Query: 98  NGDGFKLSIPSKW-NPSKEREFPGQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEE 155
             DG++   P+ W     +   PG  + + D  + + N+SVII+     K++TD G+  +
Sbjct: 20  TKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD 79

Query: 156 FLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVRP----PYYFLSVLTRTADGD 211
               V Y   K                    A ++ A  R      YY L    R   GD
Sbjct: 80  ----VGYRFMKTVND---------ASQGDRQAELINAEARDEDGQVYYTLEY--RVLVGD 124

Query: 212 EGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSV 257
              +H L + T   GKL        + RW    +   ++ ASSF V
Sbjct: 125 NVERHDLASVTTNRGKLITFDLSTAEDRW-DTVKSLFDTVASSFHV 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
1v2b_A	177	23-kDa polypeptide of photosystem II oxygen- evolv	100.0
2xb3_A	165	PSBP protein; photosynthesis, zinc-binding, photos	100.0
2lnj_A	170	SLL1418 protein, putative uncharacterized protein	100.0
1tu1_A	148	Hypothetical protein PA0094; structural genomics,	97.68
3lyd_A	161	Uncharacterized protein; PSI-2, MCSG, GEBA, genomi	93.23

>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2

Probab=100.00  E-value=1.6e-50  Score=346.26  Aligned_cols=172  Identities=78%  Similarity=1.251  Sum_probs=138.7

Q ss_pred             CCCCCCCCceeccCCceEEecCCCCccCccccCCCceEEeecCCCCCCcEEEEEecCCCCccccCCChHHHHHHHHHHHH
Q 025092           86 GKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLG  165 (258)
Q Consensus        86 ~~p~~~~~f~~y~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~~~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~  165 (258)
                      |+||.++||++|.+|||+|+||++|+++++.+++|++++|+|+++.++||+|+|+|+++++|+|||+|++||++|+++|+
T Consensus         1 ~~~~~~~g~~~y~~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~~~si~dlGspe~~~~~v~~~l~   80 (177)
T 1v2b_A            1 GKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLG   80 (177)
T ss_dssp             ------CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-
T ss_pred             CCCCCCCCceEEecCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCCCCChhHCCCHHHHHHHHHHHHH
Confidence            57888999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEecccccc
Q 025092          166 KQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWF  241 (258)
Q Consensus       166 ~~~~~~~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~  241 (258)
                      ++++.+++++++||+|+.+++++||++.+|    ++||+|||.+++++|+|+.||+|+++||+|||||+|++|++|+||+
T Consensus        81 ~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~~gkLY~l~~~a~e~~W~  160 (177)
T 1v2b_A           81 RQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWF  160 (177)
T ss_dssp             -----------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCS
T ss_pred             HHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEECCEEEEEEEecCHHHhh
Confidence            999999899999999999999999999998    8999999999999999999999999999999999999999999999


Q ss_pred             ch-hHHHHHHHhhccccC
Q 025092          242 KG-TRKYVESTASSFSVA  258 (258)
Q Consensus       242 k~-~~~~l~~vv~SF~V~  258 (258)
                      ++ ++. |++|++||+||
T Consensus       161 k~~~~~-l~~v~~SF~v~  177 (177)
T 1v2b_A          161 KGAKKF-VENTATSFSLA  177 (177)
T ss_dssp             TTTTHH-HHHHHHTCEEC
T ss_pred             hhHHHH-HHHHHhheecC
Confidence            96 775 99999999997

>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}

Probab=100.00  E-value=3.4e-36  Score=253.23  Aligned_cols=151  Identities=25%  Similarity=0.443  Sum_probs=130.4

Q ss_pred             CCCCceecc--CCceEEecCCCCccCccccCC-CceEEeecCCCCCCcEEEEEecCC-CCccccCCChHHHHHHHHHHHH
Q 025092           90 TNTDFLPYN--GDGFKLSIPSKWNPSKEREFP-GQVLRYEDNFDSNSNVSVIITPTD-KKSITDYGSPEEFLSKVDYLLG  165 (258)
Q Consensus        90 ~~~~f~~y~--~dgYsf~yP~~W~~~~e~~~~-G~dv~f~d~~~~~~nVsV~v~p~~-~~sI~d~Gspeeva~~v~~~L~  165 (258)
                      .+.||..|.  ++||+|.||++|++..   ++ |++++|+|+++..+||+|+|+|+. .++|+|||+|++    +++.|+
T Consensus         4 ~~~g~~~~~D~~~gysf~~P~~W~~~~---~~~g~~v~f~d~~~~~~~v~V~v~p~~~~~~l~~~G~~e~----va~~l~   76 (165)
T 2xb3_A            4 ATSGLQAYVDSYDGYEFLYPRGWVQVQ---VEDPVDVVFHDIIETTENVSVVVNTVASTKSLEELGSPEE----VGDRLL   76 (165)
T ss_dssp             --CCEEEEEETTTTEEEEEETTEEEEC---CCTTEEEEEEESSCTTSEEEEEEEECSSCCCSGGGCCHHH----HHHHHH
T ss_pred             CCCCceEEEcCCCCEEEEcCCCCeEec---CCCCceEEEECcccCCceEEEEEecCCCCCChHHcCCHHH----HHHHHH
Confidence            357899999  8999999999997543   44 999999999999999999999995 499999999999    667788


Q ss_pred             hhhhcCCCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCC--CCCcceEEEEEEEeCCEEEEEEeEecccc
Q 025092          166 KQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADG--DEGGKHQLITATVKGGKLYICKAQAGDKR  239 (258)
Q Consensus       166 ~~~~~~~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g--~e~~rH~L~~~tv~~gkLYtl~~qa~e~r  239 (258)
                      ++.++++         +..+.++|+++.++    ++||+|||.+++++|  +|+.||+|+++++.+||||+|++|+||++
T Consensus        77 ~~~~~~~---------~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~~g~lY~l~~sape~~  147 (165)
T 2xb3_A           77 RNIIAPS---------ESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEER  147 (165)
T ss_dssp             HHTTSCT---------TSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEETTEEEEEEEEEEGGG
T ss_pred             HHhhcCC---------CCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEECCEEEEEEEecCHHH
Confidence            8877753         22347899999987    889999999999863  35799999999999999999999999999


Q ss_pred             ccchhHHHHHHHhhcccc
Q 025092          240 WFKGTRKYVESTASSFSV  257 (258)
Q Consensus       240 W~k~~~~~l~~vv~SF~V  257 (258)
                      |++++++ |++|++||+|
T Consensus       148 w~~~~~~-l~~v~~SF~v  164 (165)
T 2xb3_A          148 WPKVEDQ-FKTIVSSFTV  164 (165)
T ss_dssp             HHHHHHH-HHHHHHTCEE
T ss_pred             hHHHHHH-HHHHHhhEEe
Confidence            9998886 9999999997

>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}

Probab=100.00  E-value=5.9e-37  Score=259.92  Aligned_cols=151  Identities=26%  Similarity=0.450  Sum_probs=132.8

Q ss_pred             CCCceecc--CCceEEecCCCCccCcccc-CCCceEEeecCCCCCCcEEEEEecCCC-CccccCCChHHHHHHHHHHHHh
Q 025092           91 NTDFLPYN--GDGFKLSIPSKWNPSKERE-FPGQVLRYEDNFDSNSNVSVIITPTDK-KSITDYGSPEEFLSKVDYLLGK  166 (258)
Q Consensus        91 ~~~f~~y~--~dgYsf~yP~~W~~~~e~~-~~G~dv~f~d~~~~~~nVsV~v~p~~~-~sI~d~Gspeeva~~v~~~L~~  166 (258)
                      +.||.+|.  .|||+|+||++|++..... ..|++++|+|+++..+||+|+|+|+.+ ++|+|||+|++    +++.|++
T Consensus        11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~~~si~d~G~pe~----va~~l~~   86 (170)
T 2lnj_A           11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSDKTLTDLGTATD----VGYRFMK   86 (170)
Confidence            57899999  8899999999998543211 139999999999999999999999966 99999999999    7778999


Q ss_pred             hhhcCCCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccc
Q 025092          167 QAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFK  242 (258)
Q Consensus       167 ~~~~~~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k  242 (258)
                      ++++++         +..+.++||++.++    ++||+|||+++++++  +.||+|++++|.+||||+|++|+||++|++
T Consensus        87 ~~~~~~---------~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~--~~rh~l~~~~v~~gklY~l~~~ape~~w~~  155 (170)
T 2lnj_A           87 TVNDAS---------QGDRQAELINAEARDEDGQVYYTLEYRVLVGDN--VERHDLASVTTNRGKLITFDLSTAEDRWDT  155 (170)
Confidence            888763         23348899999998    899999999999853  799999999999999999999999999999


Q ss_pred             hhHHHHHHHhhcccc
Q 025092          243 GTRKYVESTASSFSV  257 (258)
Q Consensus       243 ~~~~~l~~vv~SF~V  257 (258)
                      .+++ |++|++||+|
T Consensus       156 ~~~~-l~~v~~SF~v  169 (170)
T 2lnj_A          156 VKSL-FDTVASSFHV  169 (170)
Confidence            8886 9999999997

>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3

Probab=97.68  E-value=0.00084  Score=54.67  Aligned_cols=137  Identities=9%  Similarity=0.023  Sum_probs=79.6

Q ss_pred             eeccCCceEEecCCCCccCccccCCCceEEeecCCCCC--CcEEEEEecCCCCccccCCChHHHHHHHHHHHHhhhhcCC
Q 025092           95 LPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSN--SNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGK  172 (258)
Q Consensus        95 ~~y~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~~--~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~~~~~~~~  172 (258)
                      ..|.-..++|.+|.+|.   ..   ...+.+-....+.  -||.|...++     .+=.+++++++.--..|.++ +.  
T Consensus         4 ~~y~~~Egsl~lP~gw~---D~---t~nv~~~~~~~~~g~~~lvIsR~~~-----~~~~~l~~~~~~q~~~l~~~-l~--   69 (148)
T 1tu1_A            4 TLYRLHEADLEIPDAWQ---DQ---SINIFKLPASGPAREASFVISRDAS-----QGDAPFADYVARQLENAEKQ-LP--   69 (148)
T ss_dssp             EEEECSSEEEEEETTSE---EC---CBEEEEECCBTTBCCEEEEEEEECC-----CTTSCHHHHHHHHHHHHHHH-ST--
T ss_pred             ceEEECCEEEeCCCCcE---ee---eEEEEEcCCCCCCCceEEEEEeccC-----CCCCCHHHHHHHHHHHHHhh-Cc--
Confidence            45788999999999996   22   2334443322211  2444444433     22124455443211222222 22  


Q ss_pred             CCCCCCCCccccccceeeecccCCCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHHHh
Q 025092          173 TSSEGGFDPDAVATANILEASVRPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTA  252 (258)
Q Consensus       173 t~s~~g~~~~~v~~a~ll~a~~r~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~vv  252 (258)
                           ++.........+    ....-..+||.-...+   ...|++-++.+..+++|+|+.+++...|+.... .++.|+
T Consensus        70 -----~y~~~~~~~~~l----~g~~a~~~e~~~~~~g---~~~~Q~q~~~~~~~~~l~~t~t~~~~~~~~~~~-~~~~i~  136 (148)
T 1tu1_A           70 -----GFKLHKRWDINI----HGHAAVLLDYQWQREG---RDLMLRQVFIERRPAVLITTLTTTPADLPHHEP-AWKQAM  136 (148)
T ss_dssp             -----TCEEEEEEEEEE----TTEEEEEEEEEEEETT---EEEEEEEEEECCSSSEEEEEEEECGGGHHHHHH-HHHHHH
T ss_pred             -----CcEEeeeEeEEE----cCCcEEEEEEEEccCC---EEEEEEEEEEEECCeEEEEEEEcCCCCCHHHHH-HHHHHH
Confidence                 221111111121    1123355555544443   679999998888779999999999999999777 499999


Q ss_pred             hccccC
Q 025092          253 SSFSVA  258 (258)
Q Consensus       253 ~SF~V~  258 (258)
                      +||+..
T Consensus       137 ~Sf~~~  142 (148)
T 1tu1_A          137 QTLVPR  142 (148)
T ss_dssp             HTCEEC
T ss_pred             HhcccC
Confidence            999863

>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}

Probab=93.23  E-value=2.3  Score=35.18  Aligned_cols=132  Identities=16%  Similarity=0.156  Sum_probs=73.0

Q ss_pred             CCceEEecCCCCccCccccCCCceEEee-cCC--CCCCcEEEEEecCCCCccccCCChHHHHHHHHHHHHhhhhcCCCCC
Q 025092           99 GDGFKLSIPSKWNPSKEREFPGQVLRYE-DNF--DSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSS  175 (258)
Q Consensus        99 ~dgYsf~yP~~W~~~~e~~~~G~dv~f~-d~~--~~~~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~s  175 (258)
                      .-++++-.|.||++....   |.-+.-. +..  .-.-|+-|++.-....    +  .|+    .-..|.+. ++.    
T Consensus        17 ~p~~~v~~P~gWe~~~~~---~~~~~~~~~~~~~~F~pN~vVtv~r~~~~----~--~e~----~r~el~~~-~~~----   78 (161)
T 3lyd_A           17 LTGFTVPIPETWQPDPTM---GTQFAARPHTPPQGFTPNIIGTVRRAATG----A--LHN----QRTELDQR-ATQ----   78 (161)
T ss_dssp             CCEEEEECCTTEEECTTS---SSSEEEEESSCCSSSCCEEEEEEEEECTT----H--HHH----HHHHHHHH-HTT----
T ss_pred             CceeeccCCCCceEcCCC---CceEEeccCCCCCCccccEEEEEEecCcH----H--HHH----HHHHHHHH-Hhh----
Confidence            457999999999765322   3322222 221  2345888877654211    2  233    22223321 110    


Q ss_pred             CCCCCccccccceeeecccC-CCeEEEEEEEEcCCCCCCcceE--EEEEEE-eCCEEEEE--EeEeccccccchhHHHHH
Q 025092          176 EGGFDPDAVATANILEASVR-PPYYFLSVLTRTADGDEGGKHQ--LITATV-KGGKLYIC--KAQAGDKRWFKGTRKYVE  249 (258)
Q Consensus       176 ~~g~~~~~v~~a~ll~a~~r-~~YY~~Ey~~~~~~g~e~~rH~--L~~~tv-~~gkLYtl--~~qa~e~rW~k~~~~~l~  249 (258)
                          .|+. +....-+..-. ..-|..||.=..+.   .+.+.  +..+.| .++..|++  +++|.+.+-+...+. ++
T Consensus        79 ----lp~~-~~~~r~~~~~~G~pa~~iey~y~~~~---~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~~~~~d-~q  149 (161)
T 3lyd_A           79 ----LPDY-AERGRTETTVDGFPAYHIEYAYRHHG---TITIAQMITLVEVSHPHAVDIIQLTATCAGDQTADYWDT-FR  149 (161)
T ss_dssp             ----STTC-EEEEEEEEEETTEEEEEEEEEEEETT---TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHHHHHHH-HH
T ss_pred             ----CCCc-EeecccccccCCcccEEEEEEEecCC---CceEeeEEEEEEEecCCEEEEEEEEEEeccccchHHHHH-HH
Confidence                1221 11111111111 55677777754454   45662  445555 46777777  999999999887775 99


Q ss_pred             HHhhcccc
Q 025092          250 STASSFSV  257 (258)
Q Consensus       250 ~vv~SF~V  257 (258)
                      .|++||+|
T Consensus       150 ~iv~sl~v  157 (161)
T 3lyd_A          150 LMHADLTV  157 (161)
T ss_dssp             HHHHTCEE
T ss_pred             HHhheeEe
Confidence            99999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1v2ba_	171	d.107.1.2 (A:) Oxygen-evolving enhancer protein Ps	4e-65

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 171

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  198 bits (504), Expect = 4e-65
 Identities = 130/171 (76%), Positives = 149/171 (87%), Gaps = 4/171 (2%)

Query: 92  TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYG 151
           TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD+ SNV V ITPTDKKSITD+G
Sbjct: 1   TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFG 60

Query: 152 SPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRT 207
           SPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S        YY+LS+LTRT
Sbjct: 61  SPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRT 120

Query: 208 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 258
           ADG+EGGKHQL+TATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct: 121 ADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 171

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1v2ba_	171	Oxygen-evolving enhancer protein PsbP {Common toba	100.0
d1tu1a_	144	Hypothetical protein PA0094 {Pseudomonas aeruginos	98.07

>d1v2ba_ d.107.1.2 (A:) Oxygen-evolving enhancer protein PsbP {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PsbP-like
domain: Oxygen-evolving enhancer protein PsbP
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.2e-45  Score=309.83  Aligned_cols=167  Identities=78%  Similarity=1.262  Sum_probs=137.6

Q ss_pred             CCceeccCCceEEecCCCCccCccccCCCceEEeecCCCCCCcEEEEEecCCCCccccCCChHHHHHHHHHHHHhhhhcC
Q 025092           92 TDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSG  171 (258)
Q Consensus        92 ~~f~~y~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~~~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~~~~~~~  171 (258)
                      ++|++|+.|||+|+||++|+++++.+..|+|++|+|+++..+||+|+|+|+++++|++||+|+++++++++.|+++++.+
T Consensus         1 ~~~~~y~~dgy~f~~P~~W~~~~~~~~~g~d~~f~d~~~~~~nv~V~v~p~~~~sl~~~G~p~~~~~~v~~~l~~~~~~~   80 (171)
T d1v2ba_           1 TDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSG   80 (171)
T ss_dssp             CCEEEEECSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECSCSSGGGGCSHHHHHHHTGGGC-------
T ss_pred             CCcccccCCCEEEECCCCCceecccCCCCceEEEeccccCCceEEEEEecCCCcchhhccChHHHHHHHHHHHhhhhhcc
Confidence            57999999999999999999988888899999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHH
Q 025092          172 KTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKY  247 (258)
Q Consensus       172 ~t~s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~  247 (258)
                      +...+++..++.+++++|+++.++    ++||+|||.+++++|++++||+|++++|.|||||+|++|+||+||++..+++
T Consensus        81 ~~~~~~~~~~~~~~~a~v~~a~~~~~~G~~YY~~Ey~~~~~~~~~~~rh~l~~~~v~~grLYtl~~~~pe~~w~~~~~~~  160 (171)
T d1v2ba_          81 KTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKAQAGDKRWFKGAKKF  160 (171)
T ss_dssp             -----------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEETTEEEEEEEEEEGGGCSTTTTHH
T ss_pred             cccccccccccccceeEEEEeeeeecCCEEEEEEEEEEecCCCCCcccEEEEEEEEeCCEEEEEEEecCHHHhhhhhHHH
Confidence            877777777778889999999988    8999999999999888899999999999999999999999999999976666


Q ss_pred             HHHHhhccccC
Q 025092          248 VESTASSFSVA  258 (258)
Q Consensus       248 l~~vv~SF~V~  258 (258)
                      |++|++||+|+
T Consensus       161 l~~~v~SF~v~  171 (171)
T d1v2ba_         161 VENTATSFSLA  171 (171)
T ss_dssp             HHHHHHTCEEC
T ss_pred             HHHHHhceEeC
Confidence            99999999996

>d1tu1a_ d.107.1.3 (A:) Hypothetical protein PA0094 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Mog1p/PsbP-like
superfamily: Mog1p/PsbP-like
family: PA0094-like
domain: Hypothetical protein PA0094
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.07  E-value=2.9e-05  Score=60.91  Aligned_cols=132  Identities=8%  Similarity=0.054  Sum_probs=82.7

Q ss_pred             eccCCceEEecCCCCccCccccCCCceEEeecCCCC-CCcEEEEEecCCCCccccCCChHHHHHHHHHHHHhhhhcCCCC
Q 025092           96 PYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDS-NSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTS  174 (258)
Q Consensus        96 ~y~~dgYsf~yP~~W~~~~e~~~~G~dv~f~d~~~~-~~nVsV~v~p~~~~sI~d~Gspeeva~~v~~~L~~~~~~~~t~  174 (258)
                      .|..+.=+|.+|.+|.   +..  -..+.+.|+... .-||.|...+.     .+=.+++++++.--..|-++ +.    
T Consensus         5 ~Y~~~Egs~~lP~gw~---d~t--~ni~~~~~~~~~~~~~lvIsr~~l-----~~~~~l~~~~~~~~~~l~~~-l~----   69 (144)
T d1tu1a_           5 LYRLHEADLEIPDAWQ---DQS--INIFKLPASGPAREASFVISRDAS-----QGDAPFADYVARQLENAEKQ-LP----   69 (144)
T ss_dssp             EEECSSEEEEEETTSE---ECC--BEEEEECCBTTBCCEEEEEEEECC-----CTTSCHHHHHHHHHHHHHHH-ST----
T ss_pred             eeEEcCEEEeCCCCce---eCc--ceEEEecCCCCCcceEEEEEeecC-----CCCCCHHHHHHHHHHHHHhh-CC----
Confidence            4665555999999995   221  222333343221 23555555554     23335566555433334333 21    


Q ss_pred             CCCCCCccccccceeeecccC----CCeEEEEEEEEcCCCCCCcceEEEEEEEeCCEEEEEEeEeccccccchhHHHHHH
Q 025092          175 SEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVES  250 (258)
Q Consensus       175 s~~g~~~~~v~~a~ll~a~~r----~~YY~~Ey~~~~~~g~e~~rH~L~~~tv~~gkLYtl~~qa~e~rW~k~~~~~l~~  250 (258)
                         ++        ++++...-    ..-+.+||.-...+   ...|+.-++.+.++++|+|+.+++...|+...+ .++.
T Consensus        70 ---~~--------~~~~~~~~~l~g~pa~~~~~t~~~~~---~~v~Q~q~~~~~~~~~~~lt~t~~~~~~~~~~~-~~~~  134 (144)
T d1tu1a_          70 ---GF--------KLHKRWDINIHGHAAVLLDYQWQREG---RDLMLRQVFIERRPAVLITTLTTTPADLPHHEP-AWKQ  134 (144)
T ss_dssp             ---TC--------EEEEEEEEEETTEEEEEEEEEEEETT---EEEEEEEEEECCSSSEEEEEEEECGGGHHHHHH-HHHH
T ss_pred             ---Cc--------EEEeeEecccCCCcEEEEEEEEeeCC---EeEEEEEEEEEeCCCEEEEEEecCCcCCHHHHH-HHHH
Confidence               22        23333221    55577777766554   578999999999999999999999999998666 5999


Q ss_pred             Hhhcccc
Q 025092          251 TASSFSV  257 (258)
Q Consensus       251 vv~SF~V  257 (258)
                      +++||+.
T Consensus       135 il~Sf~p  141 (144)
T d1tu1a_         135 AMQTLVP  141 (144)
T ss_dssp             HHHTCEE
T ss_pred             HHHhCcc
Confidence            9999974