Citrus Sinensis ID: 025093

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHcHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHcccccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHcccccEEEcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccHHHHcccHHcEEEEcccccccHHHHHHHHHccccEEEEEccccccEEEEEEEc
Coil and Loop (DISEMBL)
maveysccgmgFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLaksgtpkdrkhaaKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGeiipqsvcsryglaigstvaPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLhgneagkggelthDETTIIAGALELTEktasdamtpiAETFAIDINAKLDKELMNLILEkghsrvpvyyeeptnIIGLILVI
Flexible Loop (DISEMBL)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGneagkggelthDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEkghsrvpvyyeeptniiglilvi
Low Complexity Region (SEG)
MAVEYSCCGMGfiihivvivflvmfAglmsgltlglmsmslVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Disordered region (IsUnstruct)
**VEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSG****RKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV*
Disordered Region (DISOPRED)
******CCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDL***************AKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR*****RAELKTLVNL*************DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Disordered Region (DISEMBL)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Disordered Region (DISPRO)
****YSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
Q9ZQR4	423	DUF21 domain-containing p	yes	no	0.996	0.607	0.883	1e-131
Q8VZI2	424	DUF21 domain-containing p	no	no	0.996	0.606	0.856	1e-125
Q8RY60	527	DUF21 domain-containing p	no	no	0.996	0.487	0.653	2e-96
Q9LTD8	500	DUF21 domain-containing p	no	no	0.992	0.512	0.640	8e-93
Q67XQ0	494	DUF21 domain-containing p	no	no	0.949	0.495	0.626	3e-88
Q4V3C7	495	DUF21 domain-containing p	no	no	0.949	0.494	0.597	3e-85
Q9ZVS8	499	Putative DUF21 domain-con	no	no	0.926	0.478	0.620	1e-83
Q12296	706	Protein MAM3 OS=Saccharom	yes	no	0.934	0.341	0.418	5e-47
Q9USJ3	679	Uncharacterized protein C	yes	no	0.945	0.359	0.377	2e-44
A0JPA0	769	Metal transporter CNNM4 O	yes	no	0.930	0.312	0.375	1e-42

>sp|Q9ZQR4|Y2452_ARATH DUF21 domain-containing protein At2g14520 OS=Arabidopsis thaliana GN=CBSDUF3 PE=2 SV=2

 Score =  466 bits (1199), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 243/257 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CCG  F IHI VIV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTP+DR HAA
Sbjct: 1   MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct: 121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+ TNIIGL+LV
Sbjct: 241 VPVYYEQRTNIIGLVLV 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZI2|Y4370_ARATH DUF21 domain-containing protein At4g33700 OS=Arabidopsis thaliana GN=CBSDUF6 PE=1 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/257 (85%), Positives = 238/257 (92%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI VIVFLV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+ RK+AA
Sbjct: 1   MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLL TLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQS+C
Sbjct: 61  KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVRVLV+IC PVA+PISKLLD LLGH R ALFRRAELKTLV+ HGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK   DAMTPI++ F IDINAKLD++LMNLILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+PTNIIGL+LV
Sbjct: 241 VPVYYEQPTNIIGLVLV 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RY60|Y1733_ARATH DUF21 domain-containing protein At1g47330 OS=Arabidopsis thaliana GN=CBSDUF7 PE=1 SV=1

 Score =  351 bits (901), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 168/257 (65%), Positives = 211/257 (82%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           M+ +  CCG  F +++V+I+ LV FAGLM+GLTLGLMS+ LVDLEVL KSG P+DR +A 
Sbjct: 1   MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAG 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KI PVV+NQHLLLCTLLI N+ AMEALPIFLD +V  W AIL+SVTLIL+FGEI+PQ+VC
Sbjct: 61  KIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           +RYGL +G+ +APFVRVL+ + +P+++PISK+LD +LG G   L RRAELKT VN HGNE
Sbjct: 121 TRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGG+LT DET+II GALELTEKTA DAMTPI+  F+++++  L+ E +N I+  GHSR
Sbjct: 181 AGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVY+  PT+IIGLILV
Sbjct: 241 VPVYFRNPTHIIGLILV 257

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTD8|Y5279_ARATH DUF21 domain-containing protein At5g52790 OS=Arabidopsis thaliana GN=CBSDUF5 PE=2 SV=2

 Score =  340 bits (871), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 164/256 (64%), Positives = 211/256 (82%)

Query: 2   AVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAK 61
           A +  CC   F ++++V V LV+FAGLMSGLTLGLMS+S+V+LEV+ K+G P DRK+A K
Sbjct: 3   ANDVPCCETMFWVYLLVCVALVVFAGLMSGLTLGLMSLSIVELEVMIKAGEPHDRKNAEK 62

Query: 62  ILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCS 121
           ILP+V+NQHLLLCTLLI NA AMEALPIF+D L+ AWGAILISVTLIL FGEIIPQ+VCS
Sbjct: 63  ILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAILISVTLILAFGEIIPQAVCS 122

Query: 122 RYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEA 181
           RYGL+IG+ ++  VR+++ + +P+++PISKLLD+LLG     L  RAELK+LV +HGNEA
Sbjct: 123 RYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRHSTLLGRAELKSLVYMHGNEA 182

Query: 182 GKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRV 241
           GKGGELTHDETTII+GAL++++K+A DAMTP+++ F++DIN KLD++ M LI   GHSR+
Sbjct: 183 GKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDINFKLDEKTMGLIASAGHSRI 242

Query: 242 PVYYEEPTNIIGLILV 257
           P+Y   P  IIG ILV
Sbjct: 243 PIYSVNPNVIIGFILV 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XQ0|Y4424_ARATH DUF21 domain-containing protein At4g14240 OS=Arabidopsis thaliana GN=CBSDUF1 PE=2 SV=1

 Score =  324 bits (831), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 154/246 (62%), Positives = 199/246 (80%), Gaps = 1/246 (0%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHL 71
           +I +  +  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SGTP ++K AA I PVV+ QH 
Sbjct: 35  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPNEKKQAAAIFPVVQKQHQ 94

Query: 72  LLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTV 131
           LL TLL+CNA AME LPI+LD L + + AI++SVT +L FGE+IPQ++C+RYGLA+G+  
Sbjct: 95  LLVTLLLCNAMAMEGLPIYLDKLFNEYVAIILSVTFVLAFGEVIPQAICTRYGLAVGANF 154

Query: 132 APFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDE 191
              VR+L+ +CYP+AFPI K+LD++LGH   ALFRRA+LK LV++H  EAGKGGELTHDE
Sbjct: 155 VWLVRILMTLCYPIAFPIGKILDLVLGHND-ALFRRAQLKALVSIHSQEAGKGGELTHDE 213

Query: 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNI 251
           TTII+GAL+LTEKTA +AMTPI  TF++D+N+KLD E M  IL +GHSRVPVY   P N+
Sbjct: 214 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKILARGHSRVPVYSGNPKNV 273

Query: 252 IGLILV 257
           IGL+LV
Sbjct: 274 IGLLLV 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q4V3C7|Y4423_ARATH DUF21 domain-containing protein At4g14230 OS=Arabidopsis thaliana GN=CBSDUF2 PE=2 SV=1

 Score =  314 bits (805), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/246 (59%), Positives = 199/246 (80%), Gaps = 1/246 (0%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHL 71
           +I +  +  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SGTPK++K +A I PVV+ QH 
Sbjct: 34  WITYAGISCFLVLFAGIMSGLTLGLMSLGLVELEILQRSGTPKEKKQSAAIFPVVQKQHQ 93

Query: 72  LLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTV 131
           LL TLL+ NA AME LPI+LD + + + AI++SVT +L  GE+IPQ++C+RYGLA+G+ +
Sbjct: 94  LLVTLLLFNALAMEGLPIYLDKIFNEYVAIILSVTFVLFVGEVIPQAICTRYGLAVGANL 153

Query: 132 APFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDE 191
              VR+L+ + YP++FPI+K+LD +LGH    LFRRA+LK LV++HG  AGKGGELTHDE
Sbjct: 154 VWLVRILMVLSYPISFPIAKMLDWVLGHND-PLFRRAQLKALVSIHGEAAGKGGELTHDE 212

Query: 192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNI 251
           TTII+GAL+LTEKTA +AMTPI  TF++D+N+KLD+E M+ I  +GHSRVPVY + P N+
Sbjct: 213 TTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDREAMDKIQARGHSRVPVYSDNPKNV 272

Query: 252 IGLILV 257
           IGL+LV
Sbjct: 273 IGLLLV 278

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVS8|Y1327_ARATH Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 149/240 (62%), Positives = 192/240 (80%), Gaps = 1/240 (0%)

Query: 18  VIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLL 77
           V  FLV+FAG+MSGLTLGLMS+ LV+LE+L +SG+  ++K AA ILPVV+ QH LL TLL
Sbjct: 39  VACFLVLFAGIMSGLTLGLMSLGLVELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLL 98

Query: 78  ICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRV 137
           +CNAAAMEALPI LD +   + A+L+SVT +L FGEIIPQ++CSRYGLA+G+     VR+
Sbjct: 99  LCNAAAMEALPICLDKIFHPFVAVLLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRI 158

Query: 138 LVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAG 197
           L+ ICYP+A+PI K+LD ++GH    LFRRA+LK LV++H  EAGKGGELTH+ET II+G
Sbjct: 159 LMIICYPIAYPIGKVLDAVIGHNDT-LFRRAQLKALVSIHSQEAGKGGELTHEETMIISG 217

Query: 198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
           AL+L++KTA +AMTPI  TF++D+N KLD E +  IL +GHSR+PVY   P NIIGL+LV
Sbjct: 218 ALDLSQKTAEEAMTPIESTFSLDVNTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLV 277

Arabidopsis thaliana (taxid: 3702)

>sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAM3 PE=1 SV=1

 Score =  187 bits (476), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 103/246 (41%), Positives = 154/246 (62%), Gaps = 5/246 (2%)

Query: 15  HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLL 73
           + ++ + LV+  G+ +GLTLGLM    V L+V++ SG+  ++K A ++L ++ R +H +L
Sbjct: 64  YYIISIILVLLGGVFAGLTLGLMGQDEVYLKVISTSGSNSEKKLAKRVLDLISRGKHWVL 123

Query: 74  CTLLICNAAAMEALPIFLDG-LVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVA 132
            TLL+ N    E LPI LD  L   W A++ S  LI++FGEIIPQSVC +YGL +G+   
Sbjct: 124 VTLLLSNVITNETLPIVLDRCLGGGWQAVVSSTILIVIFGEIIPQSVCVKYGLQVGAFFC 183

Query: 133 PFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDET 192
           PFV VL+++ YPVA+PI+ LLD +LG     +++++ LKTLV LH     +   LT DE 
Sbjct: 184 PFVLVLMYLMYPVAYPIATLLDYMLGEDHGTMYKKSGLKTLVTLHRTMGVE--RLTKDEV 241

Query: 193 TIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY-EEPTNI 251
           TII+  L+L  K   + MTPI   F +  +  LD + +  I   G SR+P++   EP N 
Sbjct: 242 TIISAVLDLKAKRVEEIMTPIENVFTMSADTILDDKTVEKIFNSGFSRIPIFLPNEPNNF 301

Query: 252 IGLILV 257
           IG++LV
Sbjct: 302 IGMLLV 307

Involved in metal homeostasis and more specially in manganese sensitivity.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9USJ3|YJ23_SCHPO Uncharacterized protein C4B3.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC4B3.03c PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 94/249 (37%), Positives = 157/249 (63%), Gaps = 5/249 (2%)

Query: 12  FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRN-QH 70
           + + +++   L++  G+ +GLT+GLM    + L+VL +SG   +R HA K+L ++R  +H
Sbjct: 62  YWMKLIISAVLILLGGVFAGLTIGLMGCDDLHLQVLEQSGDASERVHARKVLKLLRRGKH 121

Query: 71  LLLCTLLICNAAAMEALPIFLDGLVSA-WGAILISVTLILLFGEIIPQSVCSRYGLAIGS 129
            +L TLL+ N    E LPI  D ++   W A+LIS  +I++FGE+IPQ+ C RYGL+IG+
Sbjct: 122 WVLVTLLLGNVIVNETLPIVFDSIIGGGWPAVLISTAMIVIFGEVIPQATCVRYGLSIGA 181

Query: 130 TVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTH 189
            + P V  ++++ +P+A+P + +LD  LG  +  +++++ LKTLV LH +      +L  
Sbjct: 182 KLEPIVLFMMYLLWPIAYPTALILDACLGESQSTMYKKSGLKTLVTLHRDLGID--KLNQ 239

Query: 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-P 248
           DE TII   L+L EK A   MTPI + F + ++  LD++L+  I+  G+SR+PV+    P
Sbjct: 240 DEVTIITAVLDLREKHAESIMTPIEDVFTLPMDRILDEDLIGEIICAGYSRIPVHKPGFP 299

Query: 249 TNIIGLILV 257
            + IG++L 
Sbjct: 300 HDFIGMLLT 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A0JPA0|CNNM4_XENTR Metal transporter CNNM4 OS=Xenopus tropicalis GN=cnnm4 PE=2 SV=1

 Score =  173 bits (438), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/245 (37%), Positives = 150/245 (61%), Gaps = 5/245 (2%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           +   +I  L+  +G+ SGL LGLM++  ++L V+ + GT K++++A+KI PV R  + LL
Sbjct: 181 LQACIIAVLLTLSGIFSGLNLGLMALDPMELRVVQRCGTEKEKRYASKIEPVRRKGNYLL 240

Query: 74  CTLLICNAAAMEALPIFLDGLV-SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVA 132
           C+LL+ N      L   LD L+ S   A+L S T I++ GEI+PQ++CSR+GLA+G+   
Sbjct: 241 CSLLLGNVLVNTTLTALLDELIGSGLAAVLASTTGIVVLGEIVPQALCSRHGLAVGANTL 300

Query: 133 PFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDET 192
              R+ + + +PVA+P+S+LLD  LG     ++ R +L  ++ +    +G    +  +E 
Sbjct: 301 WLTRIFMLLTFPVAYPVSRLLDCALGQEIGTVYNREKLLEMLKVTEPYSG----IVREEM 356

Query: 193 TIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNII 252
            II GALEL  KT  D MT + + F +  +A LD   M+ I+E G++R+PVY  E +NI+
Sbjct: 357 NIIQGALELRTKTVEDVMTKVEDCFMLPSDAVLDFNTMSSIMESGYTRIPVYENERSNIV 416

Query: 253 GLILV 257
            ++ V
Sbjct: 417 DILYV 421

Probable metal transporter.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
255562092	425	conserved hypothetical protein [Ricinus	0.996	0.604	0.914	1e-133
449438283	425	PREDICTED: DUF21 domain-containing prote	0.996	0.604	0.910	1e-133
224056311	432	predicted protein [Populus trichocarpa]	0.992	0.592	0.890	1e-130
359475517	430	PREDICTED: DUF21 domain-containing prote	0.996	0.597	0.883	1e-129
42569036	423	CBS and transporter associated domain-co	0.996	0.607	0.883	1e-129
357476069	425	Metal transporter CNNM4 [Medicago trunca	0.996	0.604	0.883	1e-129
356524776	425	PREDICTED: DUF21 domain-containing prote	0.996	0.604	0.871	1e-128
224103813	430	predicted protein [Populus trichocarpa]	0.992	0.595	0.871	1e-125
297836072	432	CBS domain-containing protein [Arabidops	0.996	0.594	0.852	1e-125
357446147	429	CBS domain containing protein [Medicago	0.996	0.599	0.859	1e-125

>gi|255562092|ref|XP_002522054.1| conserved hypothetical protein [Ricinus communis] gi|223538653|gb|EEF40254.1| conserved hypothetical protein [Ricinus communis]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/257 (91%), Positives = 247/257 (96%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHIVVIVFLV+FAGLMSGLTLGLMSMS+VDLEVLA+SGTPKDRKHAA
Sbjct: 1   MAVEYKCCETEFFIHIVVIVFLVLFAGLMSGLTLGLMSMSIVDLEVLAQSGTPKDRKHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVVRNQHLLLCTLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAP VR+LVWIC+PVA+PISKLLD LLGHG VALFRRAELKTLVN HGNE
Sbjct: 121 SRHGLAIGATVAPVVRILVWICFPVAYPISKLLDYLLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAIDINAKLDKELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDINAKLDKELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+PTNIIGLILV
Sbjct: 241 VPVYYEQPTNIIGLILV 257

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438283|ref|XP_004136918.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Cucumis sativus]

 Score =  479 bits (1232), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/257 (91%), Positives = 246/257 (95%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI++IV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDR HAA
Sbjct: 1   MAVEYECCTPNFFIHILIIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVRVLVWIC+PVA+PISKLLD LLGHGRVALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLAIGATVAPFVRVLVWICFPVAYPISKLLDFLLGHGRVALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTA DAMTPI+ETFAIDINAKLD+ LMNL+LEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTAGDAMTPISETFAIDINAKLDRNLMNLVLEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYEEPTNIIGLILV
Sbjct: 241 VPVYYEEPTNIIGLILV 257

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056311|ref|XP_002298798.1| predicted protein [Populus trichocarpa] gi|222846056|gb|EEE83603.1| predicted protein [Populus trichocarpa]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/256 (89%), Positives = 243/256 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           M VEYSCC   F IHI++IVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDR +AA
Sbjct: 1   MTVEYSCCETNFFIHILIIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRIYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           +RYGLAIG+TV PFVRVLVWIC+PVA+PISKLLD +LGHG VALFRRAELKTLVN HGNE
Sbjct: 121 TRYGLAIGATVTPFVRVLVWICFPVAYPISKLLDYMLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAID+NAKLD+ELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDVNAKLDRELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLIL 256
           VPVYYE+ TNIIGLIL
Sbjct: 241 VPVYYEQSTNIIGLIL 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475517|ref|XP_002272975.2| PREDICTED: DUF21 domain-containing protein At2g14520-like [Vitis vinifera] gi|147815300|emb|CAN61244.1| hypothetical protein VITISV_016135 [Vitis vinifera]

 Score =  466 bits (1200), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 244/257 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F IHI++IV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHA 
Sbjct: 1   MAVEYRCCEAEFFIHILIIVGLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+ QHLLLCTLLI NAAAMEALPIFLDGL++AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKKQHLLLCTLLIFNAAAMEALPIFLDGLITAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAP VR+LVWICYPVA+PISKLLD LLGHG VALFRRAELKTLV+ HGNE
Sbjct: 121 SRYGLAIGATVAPVVRILVWICYPVAYPISKLLDFLLGHGHVALFRRAELKTLVDFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAM+PI++TFAIDINAKLD++LMNLILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMSPISDTFAIDINAKLDRDLMNLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+PTNIIGLILV
Sbjct: 241 VPVYYEQPTNIIGLILV 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569036|ref|NP_179058.3| CBS and transporter associated domain-containing protein [Arabidopsis thaliana] gi|342179473|sp|Q9ZQR4.2|Y2452_ARATH RecName: Full=DUF21 domain-containing protein At2g14520; AltName: Full=CBS domain-containing protein CBSDUF3 gi|330251214|gb|AEC06308.1| CBS and transporter associated domain-containing protein [Arabidopsis thaliana]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 243/257 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CCG  F IHI VIV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTP+DR HAA
Sbjct: 1   MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct: 121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+ TNIIGL+LV
Sbjct: 241 VPVYYEQRTNIIGLVLV 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476069|ref|XP_003608320.1| Metal transporter CNNM4 [Medicago truncatula] gi|355509375|gb|AES90517.1| Metal transporter CNNM4 [Medicago truncatula]

 Score =  466 bits (1199), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/257 (88%), Positives = 242/257 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY+CC   F IHI+VI+FLV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP DRKHA 
Sbjct: 1   MAVEYTCCESEFFIHILVIIFLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPNDRKHAV 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVVRNQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDSLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG++V PFVRVLVWICYPVAFPISKLLD LLGH   ALFRRAELKTLV+LHGNE
Sbjct: 121 SRYGLAIGASVTPFVRVLVWICYPVAFPISKLLDYLLGHRNEALFRRAELKTLVDLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAMTPI+ETFAIDIN+KLD+ELM  ILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFAIDINSKLDRELMTEILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+ TNIIGLIL+
Sbjct: 241 VPVYYEQSTNIIGLILI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524776|ref|XP_003531004.1| PREDICTED: DUF21 domain-containing protein At2g14520-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/257 (87%), Positives = 243/257 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY+CC   F +HI+VIV LV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+DRKHA 
Sbjct: 1   MAVEYTCCSTAFFVHILVIVLLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG++VAPFVRVLV IC+PVA+PISKLLD LLGH   ALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLAIGASVAPFVRVLVCICFPVAYPISKLLDFLLGHRHEALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTASDAMTPI+ETF +DIN+KLD+ELMN ILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTASDAMTPISETFTVDINSKLDRELMNEILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYE+PTNIIGL+LV
Sbjct: 241 VPVYYEQPTNIIGLVLV 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103813|ref|XP_002313203.1| predicted protein [Populus trichocarpa] gi|222849611|gb|EEE87158.1| predicted protein [Populus trichocarpa]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 223/256 (87%), Positives = 242/256 (94%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F ++IV+IV LV+FAGLMSGLTLGLMSMS+VDLEVLAKSGTPK+RK+AA
Sbjct: 1   MAVEYKCCETDFFVNIVIIVLLVLFAGLMSGLTLGLMSMSIVDLEVLAKSGTPKNRKYAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNA AMEALPIFLD LV+A  AI+ISVTLILLFGEI+PQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNATAMEALPIFLDSLVTAGVAIVISVTLILLFGEILPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGLAIG+TVAPFVR+LVWIC+PVA+PISKLLD LLGHG VALFRRAELKTLVN HGNE
Sbjct: 121 SRYGLAIGATVAPFVRLLVWICFPVAYPISKLLDFLLGHGHVALFRRAELKTLVNFHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALELTEKTASDAMTPI+ETFAIDIN KLD+ELM+LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPISETFAIDINDKLDRELMSLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLIL 256
           VPVYYE+PTNIIGLIL
Sbjct: 241 VPVYYEQPTNIIGLIL 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836072|ref|XP_002885918.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297331758|gb|EFH62177.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/264 (85%), Positives = 240/264 (90%), Gaps = 7/264 (2%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CCG  F IHI VIV LV+FAGLMSGLTLGLMSMSLVDLEVLAKSGTP+DR HAA
Sbjct: 1   MAVEYECCGTDFFIHIGVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRLHAA 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAME LPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMETLPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           S +GLAIG+T+APFVRVLVWIC PVA+PISKLLD LLGHG VALFRRAELKTLV+LHGNE
Sbjct: 121 SHHGLAIGATMAPFVRVLVWICLPVAWPISKLLDFLLGHGHVALFRRAELKTLVDLHGNE 180

Query: 181 -------AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLI 233
                  AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD+ELMNLI
Sbjct: 181 ASFKFFQAGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRELMNLI 240

Query: 234 LEKGHSRVPVYYEEPTNIIGLILV 257
           LEKGHSRVPVYYE+ TNIIGL+LV
Sbjct: 241 LEKGHSRVPVYYEQRTNIIGLVLV 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446147|ref|XP_003593351.1| CBS domain containing protein [Medicago truncatula] gi|355482399|gb|AES63602.1| CBS domain containing protein [Medicago truncatula]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/257 (85%), Positives = 237/257 (92%)

Query: 1   MAVEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAA 60
           MAVEY CC   F I I++IV LV+FAGLMSGLTLGLMS+SLVDLEVLAKSGTP+DRKHA 
Sbjct: 1   MAVEYRCCETEFFIRIMIIVLLVVFAGLMSGLTLGLMSLSLVDLEVLAKSGTPQDRKHAE 60

Query: 61  KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
           KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV AWGAILISVTLILLFGEIIPQSVC
Sbjct: 61  KILPVVKNQHLLLCTLLICNAAAMEALPIFLDSLVVAWGAILISVTLILLFGEIIPQSVC 120

Query: 121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
           SRYGL IG+TVAP VRVLVWIC PVA+PISKLLD LLGH + ALFRRAELKTLVNLHGNE
Sbjct: 121 SRYGLTIGATVAPIVRVLVWICLPVAYPISKLLDYLLGHRQEALFRRAELKTLVNLHGNE 180

Query: 181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
           AGKGGELTHDETTIIAGALEL+EKTA DAMTPI E F+IDIN+KL+++LM LILEKGHSR
Sbjct: 181 AGKGGELTHDETTIIAGALELSEKTAGDAMTPINEIFSIDINSKLNRDLMTLILEKGHSR 240

Query: 241 VPVYYEEPTNIIGLILV 257
           VPVYYEEPTNIIGLIL+
Sbjct: 241 VPVYYEEPTNIIGLILI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2055155	423	AT2G14520 "AT2G14520" [Arabido	0.996	0.607	0.785	2e-102
TAIR|locus:2134273	424	AT4G33700 "AT4G33700" [Arabido	0.996	0.606	0.758	7.4e-98
TAIR|locus:2203746	527	AT1G47330 "AT1G47330" [Arabido	0.996	0.487	0.583	3.2e-77
TAIR|locus:2149659	500	AT5G52790 "AT5G52790" [Arabido	0.837	0.432	0.652	7.5e-73
TAIR|locus:2129540	494	AT4G14240 "AT4G14240" [Arabido	0.833	0.435	0.629	8.6e-72
TAIR|locus:2129535	495	AT4G14230 "AT4G14230" [Arabido	0.833	0.434	0.597	2.7e-68
TAIR|locus:2014520	499	AT1G03270 "AT1G03270" [Arabido	0.833	0.430	0.606	5.6e-68
ASPGD|ASPL0000049101	716	AN1876 [Emericella nidulans (t	0.837	0.301	0.454	1.2e-44
CGD|CAL0000380	780	orf19.6979 [Candida albicans (	0.829	0.274	0.452	1.4e-43
UNIPROTKB|Q59YU4	780	CaO19.6979 "Putative uncharact	0.829	0.274	0.452	1.4e-43

TAIR|locus:2055155 AT2G14520 "AT2G14520" [Arabidopsis thaliana (taxid:3702)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 202/257 (78%), Positives = 217/257 (84%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             MAVEY CCG                A               VDLEVLAKSGTP+DR HAA
Sbjct:     1 MAVEYECCGTSFFIHIAVIVLLVLFAGLMSGLTLGLMSMSLVDLEVLAKSGTPRDRIHAA 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KILPVV+NQHLLLCTLLICNAAAMEALPIFLD LV+AWGAILISVTLILLFGEIIPQSVC
Sbjct:    61 KILPVVKNQHLLLCTLLICNAAAMEALPIFLDALVTAWGAILISVTLILLFGEIIPQSVC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             SR+GLAIG+TVAPFVRVLVWIC PVA+PISKLLD LLGHGRVALFRRAELKTLV+LHGNE
Sbjct:   121 SRHGLAIGATVAPFVRVLVWICLPVAWPISKLLDFLLGHGRVALFRRAELKTLVDLHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGGELTHDETTIIAGALEL+EK A DAMTPI++TF IDINAKLD++LMNLIL+KGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMAKDAMTPISDTFVIDINAKLDRDLMNLILDKGHSR 240

Query:   241 VPVYYEEPTNIIGLILV 257
             VPVYYE+ TNIIGL+LV
Sbjct:   241 VPVYYEQRTNIIGLVLV 257

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2134273 AT4G33700 "AT4G33700" [Arabidopsis thaliana (taxid:3702)]

 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 195/257 (75%), Positives = 211/257 (82%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             MAVEY CC                 A               VDLEVLAKSGTP+ RK+AA
Sbjct:     1 MAVEYVCCSPNFFIHIAVIVFLVLFAGLMSGLTLGLMSLSLVDLEVLAKSGTPEHRKYAA 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KILPVV+NQHLLL TLLICNAAAME LPIFLDGLV+AWGAILISVTLILLFGEIIPQS+C
Sbjct:    61 KILPVVKNQHLLLVTLLICNAAAMETLPIFLDGLVTAWGAILISVTLILLFGEIIPQSIC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             SRYGLAIG+TVAPFVRVLV+IC PVA+PISKLLD LLGH R ALFRRAELKTLV+ HGNE
Sbjct:   121 SRYGLAIGATVAPFVRVLVFICLPVAWPISKLLDFLLGHRRAALFRRAELKTLVDFHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGGELTHDETTIIAGALEL+EK   DAMTPI++ F IDINAKLD++LMNLILEKGHSR
Sbjct:   181 AGKGGELTHDETTIIAGALELSEKMVKDAMTPISDIFVIDINAKLDRDLMNLILEKGHSR 240

Query:   241 VPVYYEEPTNIIGLILV 257
             VPVYYE+PTNIIGL+LV
Sbjct:   241 VPVYYEQPTNIIGLVLV 257

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2203746 AT1G47330 "AT1G47330" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 3.2e-77, Sum P(2) = 3.2e-77
 Identities = 150/257 (58%), Positives = 186/257 (72%)

Query:     1 MAVEYSCCGMGXXXXXXXXXXXXXXAXXXXXXXXXXXXXXXVDLEVLAKSGTPKDRKHAA 60
             M+ +  CCG                A               VDLEVL KSG P+DR +A 
Sbjct:     1 MSSDIPCCGTTFSLYVVIIIALVAFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRINAG 60

Query:    61 KILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVC 120
             KI PVV+NQHLLLCTLLI N+ AMEALPIFLD +V  W AIL+SVTLIL+FGEI+PQ+VC
Sbjct:    61 KIFPVVKNQHLLLCTLLIGNSMAMEALPIFLDKIVPPWLAILLSVTLILVFGEIMPQAVC 120

Query:   121 SRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNE 180
             +RYGL +G+ +APFVRVL+ + +P+++PISK+LD +LG G   L RRAELKT VN HGNE
Sbjct:   121 TRYGLKVGAIMAPFVRVLLVLFFPISYPISKVLDWMLGKGHGVLLRRAELKTFVNFHGNE 180

Query:   181 AGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR 240
             AGKGG+LT DET+II GALELTEKTA DAMTPI+  F+++++  L+ E +N I+  GHSR
Sbjct:   181 AGKGGDLTTDETSIITGALELTEKTAKDAMTPISNAFSLELDTPLNLETLNTIMSVGHSR 240

Query:   241 VPVYYEEPTNIIGLILV 257
             VPVY+  PT+IIGLILV
Sbjct:   241 VPVYFRNPTHIIGLILV 257

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2149659 AT5G52790 "AT5G52790" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 141/216 (65%), Positives = 180/216 (83%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LEV+ K+G P DRK+A KILP+V+NQHLLLCTLLI NA AMEALPIF+D L+ AWGAI
Sbjct:    43 VELEVMIKAGEPHDRKNAEKILPLVKNQHLLLCTLLIGNALAMEALPIFVDSLLPAWGAI 102

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             LISVTLIL FGEIIPQ+VCSRYGL+IG+ ++  VR+++ + +P+++PISKLLD+LLG   
Sbjct:   103 LISVTLILAFGEIIPQAVCSRYGLSIGAKLSFLVRLIIIVFFPLSYPISKLLDLLLGKRH 162

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               L  RAELK+LV +HGNEAGKGGELTHDETTII+GAL++++K+A DAMTP+++ F++DI
Sbjct:   163 STLLGRAELKSLVYMHGNEAGKGGELTHDETTIISGALDMSQKSAKDAMTPVSQIFSLDI 222

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             N KLD++ M LI   GHSR+P+Y   P  IIG ILV
Sbjct:   223 NFKLDEKTMGLIASAGHSRIPIYSVNPNVIIGFILV 258

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129540 AT4G14240 "AT4G14240" [Arabidopsis thaliana (taxid:3702)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 136/216 (62%), Positives = 175/216 (81%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SGTP ++K AA I PVV+ QH LL TLL+CNA AME LPI+LD L + + AI
Sbjct:    65 VELEILQRSGTPNEKKQAAAIFPVVQKQHQLLVTLLLCNAMAMEGLPIYLDKLFNEYVAI 124

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             ++SVT +L FGE+IPQ++C+RYGLA+G+     VR+L+ +CYP+AFPI K+LD++LGH  
Sbjct:   125 ILSVTFVLAFGEVIPQAICTRYGLAVGANFVWLVRILMTLCYPIAFPIGKILDLVLGHND 184

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
              ALFRRA+LK LV++H  EAGKGGELTHDETTII+GAL+LTEKTA +AMTPI  TF++D+
Sbjct:   185 -ALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 243

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             N+KLD E M  IL +GHSRVPVY   P N+IGL+LV
Sbjct:   244 NSKLDWEAMGKILARGHSRVPVYSGNPKNVIGLLLV 279

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129535 AT4G14230 "AT4G14230" [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 129/216 (59%), Positives = 175/216 (81%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SGTPK++K +A I PVV+ QH LL TLL+ NA AME LPI+LD + + + AI
Sbjct:    64 VELEILQRSGTPKEKKQSAAIFPVVQKQHQLLVTLLLFNALAMEGLPIYLDKIFNEYVAI 123

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             ++SVT +L  GE+IPQ++C+RYGLA+G+ +   VR+L+ + YP++FPI+K+LD +LGH  
Sbjct:   124 ILSVTFVLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLGHND 183

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               LFRRA+LK LV++HG  AGKGGELTHDETTII+GAL+LTEKTA +AMTPI  TF++D+
Sbjct:   184 -PLFRRAQLKALVSIHGEAAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDV 242

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             N+KLD+E M+ I  +GHSRVPVY + P N+IGL+LV
Sbjct:   243 NSKLDREAMDKIQARGHSRVPVYSDNPKNVIGLLLV 278

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2014520 AT1G03270 "AT1G03270" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
 Identities = 131/216 (60%), Positives = 171/216 (79%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDGLVSAWGAI 101
             V+LE+L +SG+  ++K AA ILPVV+ QH LL TLL+CNAAAMEALPI LD +   + A+
Sbjct:    63 VELEILQQSGSSAEKKQAAAILPVVKKQHQLLVTLLLCNAAAMEALPICLDKIFHPFVAV 122

Query:   102 LISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGR 161
             L+SVT +L FGEIIPQ++CSRYGLA+G+     VR+L+ ICYP+A+PI K+LD ++GH  
Sbjct:   123 LLSVTFVLAFGEIIPQAICSRYGLAVGANFLWLVRILMIICYPIAYPIGKVLDAVIGHND 182

Query:   162 VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDI 221
               LFRRA+LK LV++H  EAGKGGELTH+ET II+GAL+L++KTA +AMTPI  TF++D+
Sbjct:   183 T-LFRRAQLKALVSIHSQEAGKGGELTHEETMIISGALDLSQKTAEEAMTPIESTFSLDV 241

Query:   222 NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             N KLD E +  IL +GHSR+PVY   P NIIGL+LV
Sbjct:   242 NTKLDWETIGKILSRGHSRIPVYLGNPKNIIGLLLV 277

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000049101 AN1876 [Emericella nidulans (taxid:162425)]

 Score = 473 (171.6 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 100/220 (45%), Positives = 145/220 (65%)

Query:    42 VDLEVLAKSG-TPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLD-GLVSAW 98
             V L+V+  SG +P +RK+AA +L ++ R +H +L TLL+ N    E LPI LD  L   W
Sbjct:    91 VYLQVIQTSGDSPSERKNAASVLRLLKRGKHWVLVTLLLSNVITNETLPIILDRSLGGGW 150

Query:    99 GAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLG 158
              A+L S  LI++FGEI+PQS+C RYGL IG+ +AP V  L+++  PVA+P++KLLD LLG
Sbjct:   151 PAVLGSTVLIVIFGEIVPQSICVRYGLPIGAWMAPCVLGLMYLMAPVAWPVAKLLDRLLG 210

Query:   159 HGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFA 218
                  ++++A LKTLV LH      G +L  DE TII+  L+L EK+    MTP+ + F 
Sbjct:   211 EDHGTIYKKAGLKTLVTLHKTLGEAGEQLNSDEVTIISAVLDLKEKSVGAIMTPMEDVFT 270

Query:   219 IDINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILV 257
             +  +  LD+  M+LIL +G+SR+P++  E P N IG++LV
Sbjct:   271 MSADTVLDEPTMDLILSQGYSRIPIHSPENPRNFIGMLLV 310

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0000380 orf19.6979 [Candida albicans (taxid:5476)]

 Score = 466 (169.1 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 99/219 (45%), Positives = 139/219 (63%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLDG-LVSAWG 99
             V L+V+A SG   +RKHA K+L ++ R +H +L TLL+ N    E LPI LD  L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   100 AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGH 159
             A++ S   I++FGEIIPQS+C RYGL +GS  APFV VL++I YPVA+P + LLD +LG 
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   160 GRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAI 219
                 +++++ LKTLV LH     +   L  DE TII+  L+L EK  S  MTP+   + +
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVE--RLNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   220 DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILV 257
               +A LD++ +  I   G SR+P++   EPTN IG++LV
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLV 323

GO:0003674 "molecular_function" evidence=ND

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0030026 "cellular manganese ion homeostasis" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

UNIPROTKB|Q59YU4 CaO19.6979 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 466 (169.1 bits), Expect = 1.4e-43, P = 1.4e-43
 Identities = 99/219 (45%), Positives = 139/219 (63%)

Query:    42 VDLEVLAKSGTPKDRKHAAKILPVV-RNQHLLLCTLLICNAAAMEALPIFLDG-LVSAWG 99
             V L+V+A SG   +RKHA K+L ++ R +H +L TLL+ N    E LPI LD  L   W 
Sbjct:   107 VYLKVIAHSGDSTERKHAKKVLQLIGRGKHWVLVTLLLSNVITNETLPIVLDRCLGGGWP 166

Query:   100 AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGH 159
             A++ S   I++FGEIIPQS+C RYGL +GS  APFV VL++I YPVA+P + LLD +LG 
Sbjct:   167 AVVTSTVSIVIFGEIIPQSICVRYGLQVGSLFAPFVLVLMYIMYPVAYPCAMLLDHILGE 226

Query:   160 GRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAI 219
                 +++++ LKTLV LH     +   L  DE TII+  L+L EK  S  MTP+   + +
Sbjct:   227 DHGTVYKKSGLKTLVTLHKTMGVE--RLNQDEVTIISAVLDLKEKPVSSIMTPMDRVYTM 284

Query:   220 DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLILV 257
               +A LD++ +  I   G SR+P++   EPTN IG++LV
Sbjct:   285 SADALLDEKTVEEIFNAGFSRIPIHLPNEPTNFIGMLLV 323

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZQR4	Y2452_ARATH	No assigned EC number	0.8832	0.9961	0.6075	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_I4225	hypothetical protein (432 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00012610	hypothetical protein (232 aa)			•						0.445

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	6e-38
pfam01595	182	pfam01595, DUF21, Domain of unknown function DUF21	3e-31
COG4536	423	COG4536, CorB, Putative Mg2+ and Co2+ transporter	2e-23
TIGR03520	408	TIGR03520, GldE, gliding motility-associated prote	3e-16
COG4535	293	COG4535, CorC, Putative Mg2+ and Co2+ transporter	5e-08
cd04590	111	cd04590, CBS_pair_CorC_HlyC_assoc, This cd contain	9e-06
PRK11573	413	PRK11573, PRK11573, hypothetical protein; Provisio	1e-04
PRK15094	292	PRK15094, PRK15094, magnesium/cobalt efflux protei	0.001

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score =  137 bits (346), Expect = 6e-38
 Identities = 68/260 (26%), Positives = 126/260 (48%), Gaps = 20/260 (7%)

Query: 13  IIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLL 72
           I+ +++I+ L+  +   S     L+S+    LE LA+ G  +    A   L ++   +  
Sbjct: 4   ILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRY 59

Query: 73  LCTLLICN-----------AAAMEAL--PIFLDGLVSAWGAILISVTLILLFGEIIPQSV 119
           L T+ +               A+ AL  P+     +SA  +  I   L ++FGE++P+S+
Sbjct: 60  LSTVQLGITLVSLLLGAVGEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSI 119

Query: 120 CSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHG- 178
             R    +   +AP +R    + YP+ + ++++ + +L    V       L +       
Sbjct: 120 AIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAILRLFGVEPVEEEALTSTEEELEL 179

Query: 179 -NEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG 237
            +E+ + G L  +E  +I   L+L ++T  + MTP  +  A+D+   ++ EL+ LILE G
Sbjct: 180 VSESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELIELILESG 238

Query: 238 HSRVPVYYEEPTNIIGLILV 257
           HSR+PVY  +  NIIG++ V
Sbjct: 239 HSRIPVYDGDLDNIIGIVHV 258

Length = 429

>gnl|CDD|216595 pfam01595, DUF21, Domain of unknown function DUF21

 Score =  113 bits (285), Expect = 3e-31
 Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           + +++IV L++ +   S     L+S+S   LE LA+ G       A ++L ++ N   LL
Sbjct: 1   LLLLIIVLLLLLSAFFSASETALVSLSRSRLEELAEEGNKG----ARRLLKLLANPDRLL 56

Query: 74  CTLLICNAAAMEALPI--------FLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGL 125
            TLL+ N  A   L           L G +    A L+S  LIL+FGEI+P+++  R   
Sbjct: 57  ATLLLGNTLANILLGALATLAAAELLLGSLGVLLATLVSTLLILVFGEILPKTLARRNPE 116

Query: 126 AIGSTVAPFVRVLVWICYPVAFPISKLLDVLLG----HGRVALFRRAELKTLVNLHGNEA 181
            I   +AP +RVL+ + YP+ + +SKL ++LL               EL+ LV+    E 
Sbjct: 117 RIALRLAPPLRVLMKLLYPLVWLLSKLSNLLLRLFGVKPEGPAVTEEELRALVDEGEEE- 175

Query: 182 GKGGELTHDE 191
              G +  +E
Sbjct: 176 ---GVIEEEE 182

This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Treponema hyodysenteriae hemolysin C that does not contain this domain. This domain is found in the N-terminus of the proteins adjacent to two intracellular CBS domains pfam00571. Length = 182

>gnl|CDD|226911 COG4536, CorB, Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

 Score = 97.8 bits (244), Expect = 2e-23
 Identities = 64/256 (25%), Positives = 118/256 (46%), Gaps = 23/256 (8%)

Query: 14  IHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLL 73
           I I+ I+ L++ +   SG    L +++   L  LAK G     + A ++  ++     L+
Sbjct: 4   ILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGN----RGAKRVEKLLEKPDRLI 59

Query: 74  CTLLICNAAAMEALP----IFLDGLVSAWG---AILISVTLILLFGEIIPQSVCSRYGLA 126
            T+LI N            I    L    G   A  +   +IL+F E++P+++ + Y   
Sbjct: 60  GTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPER 119

Query: 127 IGSTVAPFVRVLVWICYPVAFPISKLLDVLL-------GHGRVALFRRAELKTLVNLHGN 179
           +    +  + +LV +  P+ + ++ +   LL             L  + EL+T VN  G+
Sbjct: 120 VALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINLDQAVSQLSSKEELRTAVNESGS 179

Query: 180 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239
           E    G +   +  ++ G L+L   T SD M P  E   IDI+    +E++  +L   H+
Sbjct: 180 E----GSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPW-EEIVRQLLHSPHT 234

Query: 240 RVPVYYEEPTNIIGLI 255
           R+P+Y ++  NIIG++
Sbjct: 235 RIPLYRDDLDNIIGVL 250

Length = 423

>gnl|CDD|132559 TIGR03520, GldE, gliding motility-associated protein GldE

 Score = 77.0 bits (190), Expect = 3e-16
 Identities = 61/255 (23%), Positives = 113/255 (44%), Gaps = 28/255 (10%)

Query: 19  IVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKD----------RKHAAKILPVVRN 68
            + L++ + L+SG  +   S+S  DL    +  + K+          +K  A IL  + N
Sbjct: 1   FILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKKEQIVINLLDRPKKLLATIL--IAN 58

Query: 69  QHLLLCTLLICNAAAMEALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIG 128
             + +  +L+  + +      F   L+     ++I   LILLFGEI+P+   +R  L   
Sbjct: 59  NFINIAIVLLFTSLSDNLFGSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFA 118

Query: 129 STVAPFVRVLVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELT 188
             +A  + +L  +  P++ P+  + + +  H +         K   N+  ++  +  ELT
Sbjct: 119 KFMAYPINILDKVFSPISLPLRAITNFI--HKKFG-------KQKSNISVDQLSQALELT 169

Query: 189 ------HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242
                  +E  I+ G +          M P  + FA+DI      E++  I+E G+SR+P
Sbjct: 170 DEEDTTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSF-SEIIPKIIENGYSRIP 228

Query: 243 VYYEEPTNIIGLILV 257
           VY E   NI G++ +
Sbjct: 229 VYKETIDNITGVLYI 243

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. Length = 408

>gnl|CDD|226910 COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
           R EL  L+     ++ +   +  D   ++ G +++ +    D M P ++   +  N  LD
Sbjct: 34  REELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD 89

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLIL 256
            E +++I+E  HSR PV  E+  ++ G++L
Sbjct: 90  -ECLDVIIESAHSRFPVISEDKDHVEGILL 118

Length = 293

>gnl|CDD|239963 cd04590, CBS_pair_CorC_HlyC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

 Score = 43.2 bits (103), Expect = 9e-06
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 217 FAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
            A+D +  L+ E++ LI E GHSR PVY  +  NIIG++ V
Sbjct: 4   VALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVHV 43

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. The second CBS domain in this CD is degenerate. Length = 111

>gnl|CDD|236933 PRK11573, PRK11573, hypothetical protein; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 55/252 (21%), Positives = 114/252 (45%), Gaps = 29/252 (11%)

Query: 22  LVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICN- 80
           +V+ +   SG   G+M+++   L  +AK G     + A ++  ++R    L+  +LI N 
Sbjct: 1   MVVISAYFSGSETGMMTLNRYRLRHMAKQGN----RSAKRVEKLLRKPDRLISLVLIGNN 56

Query: 81  -----AAAME---ALPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRY--GLAIGST 130
                A+A+     + ++ D  V+    +L  V  +L+F E++P+++ + Y   +A  S+
Sbjct: 57  LVNILASALGTIVGMRLYGDAGVAIATGVLTFV--VLVFAEVLPKTIAALYPEKVAYPSS 114

Query: 131 V--APFVRV---LVWICYPVAFPISKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGG 185
              AP   +   LVW+   +   + +L+ +           + EL+T+V+          
Sbjct: 115 FLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKEELRTIVH------ESRS 168

Query: 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY 245
           +++     ++   L+L + T  D M P  E   IDIN    K ++  +    H R+ +Y 
Sbjct: 169 QISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDW-KSILRQLTHSPHGRIVLYR 227

Query: 246 EEPTNIIGLILV 257
           +   + I ++ V
Sbjct: 228 DSLDDAISMLRV 239

Length = 413

>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT 249
           D   ++ G +++ ++   D M P ++   +  N  LD E +++I+E  HSR PV  E+  
Sbjct: 53  DTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKD 111

Query: 250 NIIGLIL 256
           +I G+++
Sbjct: 112 HIEGILM 118

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
PRK11573	413	hypothetical protein; Provisional	100.0
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	100.0
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	100.0
COG1253	429	TlyC Hemolysins and related proteins containing CB	100.0
PF01595	183	DUF21: Domain of unknown function DUF21; InterPro:	99.97
KOG2118	498	consensus Predicted membrane protein, contains two	99.95
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.82
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.77
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.59
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.48
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.38
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.82
COG4109	432	Predicted transcriptional regulator containing CBS	97.8
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.37
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	97.26
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.22
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.18
COG3448	382	CBS-domain-containing membrane protein [Signal tra	97.17
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.17
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.15
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.04
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.02
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	96.97
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	96.89
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	96.83
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	96.81
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	96.81
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	96.81
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	96.78
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	96.77
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	96.75
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	96.74
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	96.7
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	96.67
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	96.66
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	96.66
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	96.65
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	96.64
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	96.64
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	96.61
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	96.58
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	96.55
PLN02274	505	inosine-5'-monophosphate dehydrogenase	96.55
COG0517	117	FOG: CBS domain [General function prediction only]	96.54
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	96.54
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	96.54
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	96.52
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	96.51
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	96.48
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	96.47
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	96.45
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	96.4
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	96.4
COG3620	187	Predicted transcriptional regulator with C-termina	96.4
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	96.38
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	96.36
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	96.36
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	96.36
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	96.34
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.29
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	96.28
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	96.27
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	96.22
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.21
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	96.19
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	96.17
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	96.12
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	96.12
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	96.05
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	96.05
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	96.04
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	96.01
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	96.01
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	95.94
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	95.91
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	95.89
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	95.88
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	95.82
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	95.78
PRK14869	546	putative manganese-dependent inorganic pyrophospha	95.74
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	95.73
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	95.73
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	95.73
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	95.72
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	95.71
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	95.7
COG2524	294	Predicted transcriptional regulator, contains C-te	95.7
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	95.66
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	95.65
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	95.65
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	95.65
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	95.64
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	95.64
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	95.64
PRK01862	574	putative voltage-gated ClC-type chloride channel C	95.59
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	95.57
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	95.56
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	95.55
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	95.54
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	95.52
PRK01862	574	putative voltage-gated ClC-type chloride channel C	95.51
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	95.4
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	95.39
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	95.37
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	95.37
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	95.35
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	95.35
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	95.34
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	95.3
PRK14869	546	putative manganese-dependent inorganic pyrophospha	95.3
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	95.3
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	95.29
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	95.25
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	95.24
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	95.2
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	95.13
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	95.12
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.09
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	95.09
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	95.07
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	95.07
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	95.06
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	95.05
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	95.02
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	94.96
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	94.95
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	94.88
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	94.86
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	94.83
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	94.75
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	94.75
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	94.74
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	94.71
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	94.68
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	94.66
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	94.55
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	94.55
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	94.53
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	94.35
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	94.32
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	94.17
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	94.14
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	94.02
COG2905	610	Predicted signal-transduction protein containing c	94.0
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	93.98
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	93.81
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	93.79
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	93.72
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	93.68
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	93.68
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	93.68
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	93.24
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	93.2
COG3448	382	CBS-domain-containing membrane protein [Signal tra	93.12
PLN02274	505	inosine-5'-monophosphate dehydrogenase	93.1
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	92.8
COG2524	294	Predicted transcriptional regulator, contains C-te	92.76
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	92.74
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	92.71
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	92.69
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	91.98
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	91.6
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	91.57
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	91.09
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	90.52
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	90.41
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	89.75
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	89.32
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	88.98
COG0517	117	FOG: CBS domain [General function prediction only]	88.55
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	88.27
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	88.13
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	88.05
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	85.58
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	85.12
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	83.25
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	82.69
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	81.62

>PRK11573 hypothetical protein; Provisional

Probab=100.00  E-value=2.7e-53  Score=395.35  Aligned_cols=224  Identities=21%  Similarity=0.364  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH---
Q 025093           23 VMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV---   95 (258)
Q Consensus        23 lllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~---   95 (258)
                      +++||||||+|+|++|+++.|+++++++|+++    |++++++++||+++++|+++||+++|...+.+..    ..+   
T Consensus         2 i~lsafFs~~E~Al~s~~~~~l~~l~~~g~~~----a~~l~~l~~~~~~~Lstiligntl~~i~~~~l~~~~~~~~~~~~   77 (413)
T PRK11573          2 VVISAYFSGSETGMMTLNRYRLRHMAKQGNRS----AKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDA   77 (413)
T ss_pred             eehhhHHHHHHHHHHHcCHHHHHHHHHcCChh----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            57899999999999999999999999999865    6678899999999999999999999876554322    122   


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCC----cccccHH
Q 025093           96 SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGR----VALFRRA  168 (258)
Q Consensus        96 ~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l---~~~~~----~~~~s~e  168 (258)
                      +.+.++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+   +|.+.    ...+|+|
T Consensus        78 ~~~ia~~i~t~l~lvfGEiiPK~la~~~~~~~a~~~a~~l~~~~~l~~P~v~~l~~~~~~l~~l~g~~~~~~~~~~~s~e  157 (413)
T PRK11573         78 GVAIATGVLTFVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGALSKE  157 (413)
T ss_pred             HHHHHHHHHHHHHHhhhhHhHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCCCHH
Confidence            2234566778999999999999999999999999999999999999999999999887754   56532    2468999


Q ss_pred             HHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC
Q 025093          169 ELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP  248 (258)
Q Consensus       169 El~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~  248 (258)
                      ||+.+++.+    .  +.++++|++|++|+|+|+|++|+||||||+||++++.+++++ ++++.+.++||||||||+++.
T Consensus       158 El~~lv~~~----~--~~l~~~e~~mi~~vl~l~~~~v~eiMtPr~~i~~l~~~~~~~-e~~~~~~~~~~SR~PVy~~~~  230 (413)
T PRK11573        158 ELRTIVHES----R--SQISRRNQDMLLSVLDLEKVTVDDIMVPRNEIVGIDINDDWK-SILRQLTHSPHGRIVLYRDSL  230 (413)
T ss_pred             HHHHHHHHH----h--hhcCHHHHHHHHHHhccCCCChhhcCCccceEEEEECCCCHH-HHHHHHHhCCCceEEEEcCCC
Confidence            999999842    2  259999999999999999999999999999999999999997 999999999999999999999


Q ss_pred             CcEEEEEEe
Q 025093          249 TNIIGLILV  257 (258)
Q Consensus       249 D~IvGiv~~  257 (258)
                      |||+|++|+
T Consensus       231 D~IiGiv~~  239 (413)
T PRK11573        231 DDAISMLRV  239 (413)
T ss_pred             CceEEEEEH
Confidence            999999995

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=100.00  E-value=8.5e-53  Score=391.79  Aligned_cols=227  Identities=26%  Similarity=0.477  Sum_probs=199.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHh----HHH
Q 025093           20 VFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLD----GLV   95 (258)
Q Consensus        20 ~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~----~~~   95 (258)
                      ++|+++||||||+|+|++|+++.|+++++++|+++    |++++++++||+++++|+++||+++|.+.+.+..    .++
T Consensus         2 ~~li~lsa~Fs~~E~Al~s~~~~~l~~l~~~~~~~----a~~~~~l~~~~~~~L~tiligntl~ni~~~~~~~~~~~~~~   77 (408)
T TIGR03520         2 ILLLLLSALVSGSEVAFFSLSPTDLNDEEEDNSKK----EQIVINLLDRPKKLLATILIANNFINIAIVLLFTSLSDNLF   77 (408)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999864    6688899999999999999999999876654332    222


Q ss_pred             H--------HHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH---hcCCCccc
Q 025093           96 S--------AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVL---LGHGRVAL  164 (258)
Q Consensus        96 ~--------~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l---~~~~~~~~  164 (258)
                      +        ...++++.|+++++|||++||++|.+||+++++++++|+++++++++|++|+++++++.+   +|.+. ..
T Consensus        78 ~~~~~~~~~~~~~~~~~t~l~lvfgEiiPK~la~~~~~~ia~~~a~~l~~~~~l~~P~~~~l~~~~~~i~~~~g~~~-~~  156 (408)
T TIGR03520        78 GSFNTELLRFLIEVVIVTFLILLFGEILPKVYANRNNLKFAKFMAYPINILDKVFSPISLPLRAITNFIHKKFGKQK-SN  156 (408)
T ss_pred             hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CC
Confidence            2        112355667889999999999999999999999999999999999999999999987765   45443 35


Q ss_pred             ccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeee
Q 025093          165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY  244 (258)
Q Consensus       165 ~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy  244 (258)
                      +|+|||+.+++.+    +++| ++++|++||+|+|+|+|++|+||||||+|+++++.+++++ ++++.+.++||||+|||
T Consensus       157 ~t~eEl~~lv~~~----~~~g-~~~~E~~~i~~vl~l~~~~v~diMtpr~~v~~l~~~~~~~-e~~~~~~~~~~sR~PV~  230 (408)
T TIGR03520       157 ISVDQLSQALELT----DEED-TTKEEQKILQGIVSFGNTDTKQVMRPRLDIFALDIETSFS-EIIPKIIENGYSRIPVY  230 (408)
T ss_pred             CCHHHHHHHHHhH----hhcC-CChHHHHHHHHHhccCCCEeeeeCCchHhEEEEECCCCHH-HHHHHHHhCCCCEEEEE
Confidence            8999999999843    3446 6899999999999999999999999999999999999997 99999999999999999


Q ss_pred             eCCCCcEEEEEEe
Q 025093          245 YEEPTNIIGLILV  257 (258)
Q Consensus       245 ~~~~D~IvGiv~~  257 (258)
                      +++.|||+|++|+
T Consensus       231 ~~~~d~ivGiv~~  243 (408)
T TIGR03520       231 KETIDNITGVLYI  243 (408)
T ss_pred             cCCCCceEEEEEH
Confidence            9999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.8e-54  Score=382.65  Aligned_cols=237  Identities=27%  Similarity=0.430  Sum_probs=212.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHH
Q 025093           12 FIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFL   91 (258)
Q Consensus        12 ~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~   91 (258)
                      .|..++++++|+.+||||||+|+|++++||.|+++++++|+++    |+++.+++++|+++++++++|||++|++.+.+.
T Consensus         2 ~~~l~~~iiili~iSAfFSgSETal~a~nr~Rlr~la~~G~~~----Akrv~kLL~k~drlig~iLIGNNLvNilasala   77 (423)
T COG4536           2 TWILIIAIIILIIISAFFSGSETALTALNRYRLRHLAKQGNRG----AKRVEKLLEKPDRLIGTILIGNNLVNILASALA   77 (423)
T ss_pred             cchHHHHHHHHHHHHHHhcccHHHHhhccHHHHHHHHHccchh----hHHHHHHhcCchheeeeeeecccHHHHHHHHHH
Confidence            5788889999999999999999999999999999999999976    778999999999999999999999998765443


Q ss_pred             h----HHHH---HHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HhcCCC
Q 025093           92 D----GLVS---AWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDV---LLGHGR  161 (258)
Q Consensus        92 ~----~~~~---~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~---l~~~~~  161 (258)
                      .    ++++   ..+|+.+.|+++++|+|++||++|..|||++++.+++++..+.++|+|++|+++++++.   ++|.+.
T Consensus        78 T~~~irl~Gd~GvaIAt~~mT~vilvFaEVlPKt~Aa~~perva~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~~  157 (423)
T COG4536          78 TILGIRLYGDAGVAIATGVLTFVILVFAEVLPKTIAALYPERVALPSSFILAILVRLFGPLVWLLNAITRRLLRLLGINL  157 (423)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHhcchHHhhhChhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCc
Confidence            2    2232   23577888999999999999999999999999999999999999999999999998765   466542


Q ss_pred             ----cccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          162 ----VALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       162 ----~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                          +...|.||+|.+++.    ++++|...+++++|+-++||+++.+|+||||||++|.+++.|++++ ++++.+.+++
T Consensus       158 ~~~~~~~~s~EElR~~v~~----~~~e~~~~~~~rdmL~gvLDLe~~tV~DIMvpR~~i~~id~d~~~e-~iv~ql~~s~  232 (423)
T COG4536         158 DQAVSQLSSKEELRTAVNE----SGSEGSVNKIDRDMLLGVLDLENLTVSDIMVPRNEIIGIDIDDPWE-EIVRQLLHSP  232 (423)
T ss_pred             ccccccccCHHHHHHHHHH----hhcccccccccHHHHhcccccccceeeeeeccccceeeecCCCCHH-HHHHHHhhCC
Confidence                346899999999984    4455888888999999999999999999999999999999999997 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEEe
Q 025093          238 HSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       238 ~SR~PVy~~~~D~IvGiv~~  257 (258)
                      |+|+|||++|.|||+||+|+
T Consensus       233 HtRiplyr~~~DnIiGvlh~  252 (423)
T COG4536         233 HTRIPLYRDDLDNIIGVLHV  252 (423)
T ss_pred             CCceeeecCChhHhhhhhhH
Confidence            99999999999999999985

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=100.00  E-value=1.3e-48  Score=366.21  Aligned_cols=237  Identities=28%  Similarity=0.494  Sum_probs=205.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHH
Q 025093           11 GFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIF   90 (258)
Q Consensus        11 ~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~   90 (258)
                      +.+..++++++|+++|||||++|+|++|++|.|+++++++|+++    |..++++.++|+.+++++++|+++++...+..
T Consensus         2 ~~~~~~~~i~~li~l~~ff~a~E~A~~s~~~~rl~~~~~~g~~~----a~~~~~~~~~~~~~ls~~qigitl~~i~~g~~   77 (429)
T COG1253           2 SLILTLLLILLLIALSAFFSAAEFALVSLRRSRLEQLAEEGNKR----AKAALKLIERLNRYLSTVQLGITLVSLLLGAV   77 (429)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHccCHh----HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHH
Confidence            34567788889999999999999999999999999999998865    66788999999999999999999988655443


Q ss_pred             HhHHH----HHHH---------HHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 025093           91 LDGLV----SAWG---------AILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL  157 (258)
Q Consensus        91 ~~~~~----~~~~---------a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~  157 (258)
                      ....+    ..+.         .+++.|+++++|||++||++|.++|++++++.++|+++++++++|++|+++++++.++
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~~~~~~t~l~~i~gEl~PK~~a~~~~e~va~~~a~~~~~~~~l~~P~i~~~~~~a~~il  157 (429)
T COG1253          78 GEPALAALLEPLLEALGLSAALSFAIITFLHVVFGELVPKSIAIRNPEKVALLIAPPLRFFYRLLYPLIWLLNRIANAIL  157 (429)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHHHHHhhhheeechhhhHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32211    1111         1456788999999999999999999999999999999999999999999999988764


Q ss_pred             ---cCC----CcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHH
Q 025093          158 ---GHG----RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELM  230 (258)
Q Consensus       158 ---~~~----~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~  230 (258)
                         |.+    .+...+++|++ +++    ++.++|.++++|++||+|+|+|++++|+|+||||+||++++.+++.+ ++.
T Consensus       158 ~l~~~~~~~~~~~~~~~~~~~-~~~----~~~~~g~~~~~E~~mi~~v~~l~~~~v~eiMtPR~~i~~l~~~~~~~-~~~  231 (429)
T COG1253         158 RLFGVEPVEEEALTSTEEELE-LVS----ESAEEGVLEEEEREMINNVLDLDDRTVREIMTPRTDIVALDLTDTVE-ELI  231 (429)
T ss_pred             HHcCCCCCCccccCccHHHHH-HHH----hHHhcCCcCHHHHHHHHHHhccCCcEeeeEeeecccEEEEcCCCCHH-HHH
Confidence               433    22346778888 776    45567999999999999999999999999999999999999999997 999


Q ss_pred             HHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          231 NLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       231 ~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.+.++||||+|||+++.|||+|++|+
T Consensus       232 ~~~~~~~~SR~PV~~~~~D~iiGiv~~  258 (429)
T COG1253         232 ELILESGHSRIPVYDGDLDNIIGIVHV  258 (429)
T ss_pred             HHHHhCCCCeeeEEcCCCCcEEEEEEH
Confidence            999999999999999999999999995

>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function

Probab=99.97  E-value=1.7e-30  Score=216.68  Aligned_cols=169  Identities=28%  Similarity=0.456  Sum_probs=143.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHHhHHHHHHHHHchhHHHHHHHHHHHHHHHHHHHHHhH-
Q 025093           15 HIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRKHAAKILPVVRNQHLLLCTLLICNAAAMEALPIFLDG-   93 (258)
Q Consensus        15 ~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~~a~~~~~l~~~~~~~l~t~lig~~~~~~~~~~~~~~-   93 (258)
                      .++++++++++||+||++|+|++++|+.+++.++++|+++    ++++.++++||+++++|+++||++++...+.+... 
T Consensus         2 ~l~~~~~ll~~~~~fs~~e~Al~~l~~~~l~~~~~~~~~~----a~~~~~l~~~~~~~l~t~~~~~~~~~~~~~~l~~~~   77 (183)
T PF01595_consen    2 LLLLALLLLLLSAFFSAAETALFSLSRSRLEELAEEGDKR----ARRLLKLLERPERLLSTILLGNTLSNVLAGVLATVL   77 (183)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHH----HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999999998854    66888999999999999999999988766543322 


Q ss_pred             ---HH----HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh---cCCC--
Q 025093           94 ---LV----SAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLL---GHGR--  161 (258)
Q Consensus        94 ---~~----~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~---~~~~--  161 (258)
                         .+    +.+.+.++.++++++|||++||++|.+||++++.+.+|++++++++++|++++++++.+++.   |.+.  
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~lif~e~lPk~l~~~~~~~~~~~~a~~l~~~~~l~~P~~~~l~~i~~~~~~~~~~~~~~  157 (183)
T PF01595_consen   78 ASNLFGPWWALLIAFLIITLLILIFGEILPKALARRHPEKIALRLAPLLRVLMILLYPLVWLLSFISNKILKLFGIENEE  157 (183)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence               22    23445666788899999999999999999999999999999999999999999999887654   4432  


Q ss_pred             cccccHHHHHHHHHhhcccccCCCCCCHhH
Q 025093          162 VALFRRAELKTLVNLHGNEAGKGGELTHDE  191 (258)
Q Consensus       162 ~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E  191 (258)
                      ++.+|+|||+.+++.    ++++|.++++|
T Consensus       158 ~~~~s~eel~~lv~~----~~e~G~i~~~E  183 (183)
T PF01595_consen  158 DPAVSEEELRSLVEE----GEEEGVIEEEE  183 (183)
T ss_pred             cCCCCHHHHHHHHHh----HHHCCCCCCCC
Confidence            457899999999994    45679999886

Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=99.95  E-value=1.5e-29  Score=239.69  Aligned_cols=251  Identities=54%  Similarity=0.849  Sum_probs=227.7

Q ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHcCChhhHH-hHHHHHHHHHchhHHHHHHHHHHH
Q 025093            3 VEYSCCGMGFIIHIVVIVFLVMFAGLMSGLTLGLMSMSLVDLEVLAKSGTPKDRK-HAAKILPVVRNQHLLLCTLLICNA   81 (258)
Q Consensus         3 ~~~~~~~~~~~~~l~~~~~llllsa~fs~~E~Al~s~~~~rl~~l~~~g~~~~~~-~a~~~~~l~~~~~~~l~t~lig~~   81 (258)
                      ....||++.++.+.-+..+|+++++++||.+.++.+.+-..++.+.+.|..++++ .++++....++.+.+++|.+++|.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~l~~~~~~~sgltlglm~~~~~~l~~l~~s~~~~~~~~~~a~i~~~~k~~~~lL~tlll~n~   82 (498)
T KOG2118|consen    3 NAIPKTGSFMPVTFEIIIILVLLLGLMSGLTLGLMSLTEVELEVLRKSGEVNEKKLIAAAIFPVRKNLHDLLVTLLLCNS   82 (498)
T ss_pred             ccccccchhhhHHHHHHHHHHHHHHHhhhcchhheechhhhhHHHhccCCccchhhhhhhhcccccccceeeehheehhh
Confidence            3467999999888888888999999999999999999999999999999888765 466777788889999999999999


Q ss_pred             HHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 025093           82 AAMEA-LPIFLDGLVSAWGAILISVTLILLFGEIIPQSVCSRYGLAIGSTVAPFVRVLVWICYPVAFPISKLLDVLLGHG  160 (258)
Q Consensus        82 ~~~~~-~~~~~~~~~~~~~a~~i~~~l~lvfgEi~PK~la~~~~~~~a~~~a~~l~~~~~l~~P~~~~l~~~~~~l~~~~  160 (258)
                      +++.+ ++.++....+.|.++.+++..++.|||++|++++.++...+.....++.+++.++++|+.|+++++ ++.+|..
T Consensus        83 ~~~e~~L~i~~~~~~~~~~a~~is~~~i~~~geIipq~vc~~~gl~vga~~~~~~~i~~~l~~PI~~p~~~~-d~~lg~~  161 (498)
T KOG2118|consen   83 IATEAVLPFFLDAESGESGALRISVTEILIFGEIIPQSVCVKYGLAVGANLVPLVRILSFLCLPIAYPFSKL-DTALGLN  161 (498)
T ss_pred             hccccccceeecccccccceEecceeeeeecccccchHHHhhhcccccccceehHHHHHHHhhhhheehhhh-hhhhccc
Confidence            99988 777777666678888999999999999999999999999999999999999999999999999988 7788877


Q ss_pred             CcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCce
Q 025093          161 RVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR  240 (258)
Q Consensus       161 ~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR  240 (258)
                      .+....+.++..++..+++|+++ |.+..+|..+|.+++++.++.++|||||-.++++++.+..++.+....+.++||||
T Consensus       162 ~~~~~~~~~l~~lv~~~~~e~~~-g~~~~~e~~ii~g~l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sr  240 (498)
T KOG2118|consen  162 LGEFLKRASLLALVQLVGNEAGK-GDLTYDELTIITGALELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSR  240 (498)
T ss_pred             cccchhhHHHHHHHHHHhccccc-CcccchhhhHhhhhHHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcce
Confidence            66667788999999988877766 99999999999999999999999999999999999999999888899999999999


Q ss_pred             eeeeeCCCCcEEEEE
Q 025093          241 VPVYYEEPTNIIGLI  255 (258)
Q Consensus       241 ~PVy~~~~D~IvGiv  255 (258)
                      +|||+++..|++|.+
T Consensus       241 ipv~~~~~~~~i~~~  255 (498)
T KOG2118|consen  241 IPVYEQEPKNKIGGL  255 (498)
T ss_pred             eeeccCcccchhhHH
Confidence            999999988888863

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.82  E-value=4.4e-20  Score=165.20  Aligned_cols=96  Identities=25%  Similarity=0.479  Sum_probs=86.6

Q ss_pred             HHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHH
Q 025093          154 DVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLI  233 (258)
Q Consensus       154 ~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~  233 (258)
                      .+++|.+.   .|+|||+.+++.    +.++|.++++|++||+|+|+|++++|+++|+||.++++++.+++++ ++++.+
T Consensus        24 ~~~~~~~~---~t~eEl~~l~~~----~~~~g~l~~~e~~~i~~vl~l~~~~V~diMtpr~~i~~l~~~~sl~-e~~~~i   95 (292)
T PRK15094         24 SQLFHGEP---KNRDELLALIRD----SEQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLD-ECLDVI   95 (292)
T ss_pred             HHHcCCCC---CCHHHHHHHHHh----HhhcCCCCHHHHHHHHHHhccCCCEEeEEccchHHEEEEeCCCCHH-HHHHHH
Confidence            33455543   489999999984    4456999999999999999999999999999999999999999997 999999


Q ss_pred             HHcCCceeeeeeCCCCcEEEEEEe
Q 025093          234 LEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       234 ~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+++|||||||+++.|+++|++|+
T Consensus        96 ~~~~~sr~PV~~~~~d~iiGiv~~  119 (292)
T PRK15094         96 IESAHSRFPVISEDKDHIEGILMA  119 (292)
T ss_pred             HhcCCcEEEEecCCCCcEEEEEEH
Confidence            999999999999988999999985

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.77  E-value=2.3e-19  Score=151.82  Aligned_cols=100  Identities=26%  Similarity=0.496  Sum_probs=87.6

Q ss_pred             HHHHHHHhcCCCcccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHH
Q 025093          150 SKLLDVLLGHGRVALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKEL  229 (258)
Q Consensus       150 ~~~~~~l~~~~~~~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~  229 (258)
                      ..+++.+|..++   -+++|+-.++.    ++++.+.++++-.+|+++++++.|.+|||||+||++|++++.+.+++ +.
T Consensus        20 e~L~~~~f~gEp---knr~eLl~liR----dse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~-~~   91 (293)
T COG4535          20 ERLLSQLFHGEP---KNREELLELIR----DSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLD-EC   91 (293)
T ss_pred             HHHHHHHhcCCC---cCHHHHHHHHH----HhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHH-HH
Confidence            334444444333   47899999998    45567899999999999999999999999999999999999999997 99


Q ss_pred             HHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          230 MNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       230 ~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +..+.++.||||||+.++.|+|.||+++
T Consensus        92 l~~iiesaHSRfPVi~edkD~v~GIL~A  119 (293)
T COG4535          92 LDVIIESAHSRFPVISEDKDHVEGILLA  119 (293)
T ss_pred             HHHHHHhccccCCcccCCchhhhhhhhH
Confidence            9999999999999999999999999874

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.59  E-value=1.5e-07  Score=89.31  Aligned_cols=83  Identities=13%  Similarity=0.282  Sum_probs=70.1

Q ss_pred             ccccHHHHHHHHHhhcccccCCCCCCH-----hHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          163 ALFRRAELKTLVNLHGNEAGKGGELTH-----DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~-----~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                      ..+|++|+..++..    .+..|.+.+     +|.+++++++++++.     |++  ++++++.+++++ ++++.+.+++
T Consensus        43 dtvTe~ema~~ma~----~gg~GvI~~n~~~e~q~~~V~~Vk~~~~~-----~~~--~~vtl~~~~tv~-eal~~m~~~~  110 (450)
T TIGR01302        43 DTVTESRMAIAMAR----EGGIGVIHRNMSIEEQAEQVKRVKRAENG-----IIS--DPVTISPETTVA-DVLELMERKG  110 (450)
T ss_pred             CccCHHHHHHHHHh----cCCCceeecCCCHHHHHHHHhhhccccCc-----eec--CceEeCCCCCHH-HHHHHHHHcC
Confidence            35799999999974    334688984     899999999988775     443  678999999997 9999999999


Q ss_pred             CceeeeeeCCC--CcEEEEEEe
Q 025093          238 HSRVPVYYEEP--TNIIGLILV  257 (258)
Q Consensus       238 ~SR~PVy~~~~--D~IvGiv~~  257 (258)
                      |+++||++++.  |+++|+++.
T Consensus       111 ~s~lpVvd~~~~~~~lvGIVt~  132 (450)
T TIGR01302       111 ISGIPVVEDGDMTGKLVGIITK  132 (450)
T ss_pred             CCEEEEEeCCCCCCeEEEEEEH
Confidence            99999999875  799999973

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.48  E-value=3.9e-07  Score=86.45  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=72.6

Q ss_pred             cccHHHHHHHHHhhcccccCC------CCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHH--
Q 025093          164 LFRRAELKTLVNLHGNEAGKG------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILE--  235 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~------g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~--  235 (258)
                      .+++||+..+++..    .++      +.++++|++++++++++++.+|+++|+  +++.+++.+++++ ++++.+++  
T Consensus        89 ~l~~dd~~~ll~~l----~~~~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt--~~~~~v~~~~tv~-eal~~l~~~~  161 (449)
T TIGR00400        89 EMNLDDVIDLLEEV----PANVVQQLLASSTEEERKAINLLLSYSDDSAGRIMT--IEYVELKEDYTVG-KALDYIRRVA  161 (449)
T ss_pred             cCChhHHHHHHHhC----CHHHHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCc--CceEEECCCCcHH-HHHHHHHhcC
Confidence            46789999999743    222      479999999999999999999999999  5899999999997 99999975  


Q ss_pred             -cCCceeeee-eCCCCcEEEEEEe
Q 025093          236 -KGHSRVPVY-YEEPTNIIGLILV  257 (258)
Q Consensus       236 -~~~SR~PVy-~~~~D~IvGiv~~  257 (258)
                       .+++++++| .++.|+++|+++.
T Consensus       162 ~~~~~~~~v~Vvd~~~~l~GvV~l  185 (449)
T TIGR00400       162 KTKEDIYTLYVTNESKHLKGVLSI  185 (449)
T ss_pred             CCccceeEEEEECCCCeEEEEEEH
Confidence             457778877 4556889999973

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.38  E-value=5.7e-07  Score=60.11  Aligned_cols=47  Identities=30%  Similarity=0.598  Sum_probs=43.6

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       206 v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |+++|+|  +..+++.++++. ++.+.+.+++++++||++++ +.++|+++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~-~~~~G~is   47 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLE-EALEIMRKNGISRLPVVDED-GKLVGIIS   47 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHH-HHHHHHHHHTSSEEEEESTT-SBEEEEEE
T ss_pred             CeECCcC--CCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEE
Confidence            5789998  899999999997 99999999999999999876 99999986

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.82  E-value=6.7e-05  Score=71.98  Aligned_cols=81  Identities=17%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             ccccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          163 ALFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       163 ~~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                      ..+|++|+...+..    .+..|.|.     ++++++++++.+++     ++|+  .++.+++.+++++ ++++.+.+++
T Consensus        50 ~~vT~~ela~ava~----~GglG~i~~~~~~e~~~~~I~~vk~~~-----dim~--~~~v~i~~~~tv~-ea~~~m~~~~  117 (486)
T PRK05567         50 DTVTEARMAIAMAR----EGGIGVIHKNMSIEEQAEEVRKVKRSE-----SGVV--TDPVTVTPDTTLA-EALALMARYG  117 (486)
T ss_pred             CCcCHHHHHHHHHh----CCCCCEecCCCCHHHHHHHHHHhhhhh-----hccc--CCCeEeCCCCCHH-HHHHHHHHhC
Confidence            35799999999973    44557787     58899999999654     5666  5788899999997 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEE
Q 025093          238 HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       238 ~SR~PVy~~~~D~IvGiv~  256 (258)
                      |+++||+++ .++++|+++
T Consensus       118 ~~~lpVvd~-~g~lvGiVt  135 (486)
T PRK05567        118 ISGVPVVDE-NGKLVGIIT  135 (486)
T ss_pred             CCEEEEEcc-CCEEEEEEE
Confidence            999999985 588999986

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.80  E-value=2.6e-05  Score=70.52  Aligned_cols=65  Identities=28%  Similarity=0.489  Sum_probs=54.9

Q ss_pred             HHHHHHhhh-----ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          191 ETTIIAGAL-----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       191 E~~mi~~i~-----~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      -..||.+++     .=+=.+|.|||+|.++-.++..+++++ +..+...++|||||||.++. -.++|+|..
T Consensus       170 VAtmIN~Al~n~lIKkdI~~Vedi~~P~~~~~yL~~~d~v~-d~~~l~~kt~~sRfPVvn~~-~kvvGvVt~  239 (432)
T COG4109         170 VATMINKALSNQLIKKDIITVEDIMTPLEDTSYLRETDTVE-DWLDLVEKTGHSRFPVVNRS-MKVVGVVTM  239 (432)
T ss_pred             HHHHHHHHHHHhhhhhheeeHHHhccccccceeccccccHH-HHHHHHHHcCCCccceeccc-ceEEEEEEe
Confidence            345666655     345578999999999999999999997 99999999999999999763 679999863

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.37  E-value=0.0004  Score=51.90  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=47.4

Q ss_pred             HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.+-.+.++.++.++|.|.  +..++.++++. ++++.+.+++.+++||.+++ ++++|+++.
T Consensus        50 ~~~~~~~~~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~iG~it~  108 (114)
T cd04604          50 LEKGLDILTLPVADVMTRN--PKTIDPDALAA-EALELMEENKITALPVVDDN-GRPVGVLHI  108 (114)
T ss_pred             HhccCccccCCHHHhhccC--CeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEEEH
Confidence            3333445556899999874  56789999997 99999999999999999764 889999863

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=97.26  E-value=0.00051  Score=51.69  Aligned_cols=50  Identities=16%  Similarity=0.236  Sum_probs=43.1

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++.++|.+  +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++
T Consensus        55 ~~~v~~~~~~--~~~~v~~~~~l~-~al~~m~~~~~~~lpVvd~~-~~~~Giit  104 (111)
T cd04603          55 TLKVCEVYIV--PVPIVYCDSKVT-DLLRIFRETEPPVVAVVDKE-GKLVGTIY  104 (111)
T ss_pred             ccChhheeec--CCcEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CeEEEEEE
Confidence            4579999954  567899999997 99999999999999999865 68999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.22  E-value=0.00063  Score=51.13  Aligned_cols=52  Identities=29%  Similarity=0.454  Sum_probs=45.6

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.|-.+...++.++++. ++++.+.+++.+++||.++ .++++|+++
T Consensus        56 ~~~v~~~~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~  107 (114)
T cd04801          56 QTTVIQVMTPAAKLVTVLSEESLA-EVLKLLEEQGLDELAVVED-SGQVIGLIT  107 (114)
T ss_pred             ccchhhhhcccccceEECCCCcHH-HHHHHHHHCCCCeeEEEcC-CCcEEEEEe
Confidence            567999999876677899999997 9999999999999999976 368999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.18  E-value=0.00086  Score=51.12  Aligned_cols=49  Identities=22%  Similarity=0.334  Sum_probs=42.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++++|.+  +...++.++++. ++++.+.+.++..+||.+++ ++++|++.
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~-~a~~~~~~~~~~~lpVvd~~-~~l~Givt  106 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLR-EALNLMHEHNIRTLPVVDDD-GTPAGIIT  106 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence            679999986  577789999997 99999999999999999764 67999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=97.17  E-value=0.0093  Score=53.16  Aligned_cols=85  Identities=18%  Similarity=0.342  Sum_probs=65.8

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhh-------hccccccccccccccceEEEEeCCCCccHHHHHHHHHc
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGA-------LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK  236 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i-------~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~  236 (258)
                      .+|.+++...++.    -+|.=+++.++-+-+-+=       =.+.+.+..|||.+  |+++++.+++++ ++.+++.++
T Consensus       202 gfs~~Dld~aL~~----~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSr--dVvtv~~~ts~d-hA~~ll~~H  274 (382)
T COG3448         202 GFSSEDLDAALQR----LGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSR--DVVTVSTDTSID-HARKLLQEH  274 (382)
T ss_pred             CCCHHHHHHHHHh----cCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCc--cceecCCcCChH-HHHHHHHHc
Confidence            4788999988873    233445666553332221       14678999999996  999999999998 999999999


Q ss_pred             CCceeeeeeCCCCcEEEEEE
Q 025093          237 GHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       237 ~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.--+||.+++ ..++|+|.
T Consensus       275 ~ikaLPV~d~~-~rl~GiVt  293 (382)
T COG3448         275 RIKALPVLDEH-RRLVGIVT  293 (382)
T ss_pred             Ccccccccccc-cceeeeee
Confidence            99999999764 78999974

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.17  E-value=0.00083  Score=51.02  Aligned_cols=55  Identities=18%  Similarity=0.198  Sum_probs=46.3

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC--CcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP--TNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~--D~IvGiv~  256 (258)
                      +.+.++.++|+.-.++..++.++++. ++++.+.+++++++||.+++.  ++++|+++
T Consensus        55 ~~~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit  111 (118)
T cd04617          55 LQKVPVGVIMTRMPNITTTTPEESVL-EAAKKLIEHQVDSLPVVEKVDEGLEVIGRIT  111 (118)
T ss_pred             ccCCCHHHHhCCCCCcEEECCCCcHH-HHHHHHHHcCCCEeeEEeCCCccceEEEEEE
Confidence            35677889997434688999999997 999999999999999998753  57999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.00079  Score=50.10  Aligned_cols=49  Identities=22%  Similarity=0.449  Sum_probs=43.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.+  +...++.++++. ++++.+.+++++++||.++  ++++|++.
T Consensus        58 ~~~~~~~~~~--~~~~v~~~~~~~-~~l~~~~~~~~~~~~Vv~~--~~~~Gvit  106 (113)
T cd04623          58 DTPVSEIMTR--NVITVTPDDTVD-EAMALMTERRFRHLPVVDG--GKLVGIVS  106 (113)
T ss_pred             ccCHHHhcCC--CcEEECCCCcHH-HHHHHHHHcCCCEeEEEeC--CEEEEEEE
Confidence            5688999966  678899999997 9999999999999999986  89999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.04  E-value=0.00069  Score=52.15  Aligned_cols=54  Identities=30%  Similarity=0.404  Sum_probs=43.3

Q ss_pred             ccccccccccccceEEEEe----CCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAID----INAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~----~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+......++    .++++. ++++.+.+++.+++||++++.++++|++.
T Consensus        62 ~~~~v~~im~~~~~~~~~~~~~~~~~~l~-~~l~~m~~~~~~~lpVvd~~~~~~~G~it  119 (126)
T cd04640          62 SELTVADVMTPKEDLKALDLEELENASVG-DVVETLKASGRQHALVVDREHHQIRGIIS  119 (126)
T ss_pred             hheEHHHhcCchhhhccccHHHhccCcHH-HHHHHHHHCCCceEEEEECCCCEEEEEEe
Confidence            4577999997655455554    578886 89999999999999999875457999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.02  E-value=0.001  Score=50.04  Aligned_cols=52  Identities=29%  Similarity=0.509  Sum_probs=45.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.++.++|.+  +...++.+++++ ++++.+.+.+++++||++++ ++++|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvvt  115 (122)
T cd04585          64 LSKIKVSDIMTR--DPITVSPDASVE-EAAELMLERKISGLPVVDDQ-GRLVGIIT  115 (122)
T ss_pred             hcccCHHHhccC--CCeEeCCCCcHH-HHHHHHHHcCCCceeEECCC-CcEEEEEE
Confidence            456789999976  678899999997 99999999999999999764 68999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.97  E-value=0.0014  Score=49.49  Aligned_cols=51  Identities=16%  Similarity=0.309  Sum_probs=43.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|..  +...++.+++++ ++++.+.+++..++||.+++ ++++|+++
T Consensus        57 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~~Gvi~  107 (114)
T cd04619          57 CTAPVENVMTR--AVVSCRPGDLLH-DVWQVMKQRGLKNIPVVDEN-ARPLGVLN  107 (114)
T ss_pred             ccCCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCeEEEECCC-CcEEEEEE
Confidence            34678899964  677899999997 99999999999999999864 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=96.89  E-value=0.0019  Score=47.65  Aligned_cols=50  Identities=20%  Similarity=0.375  Sum_probs=42.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++++|.++  ..+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        51 ~~~~~~~~~~~--~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gvi~  100 (107)
T cd04610          51 DETVEEIMSKD--LVVAVPEMDIM-DAARVMFRTGISKLPVVDEN-NNLVGIIT  100 (107)
T ss_pred             cccHHHhCCCC--CeEECCCCCHH-HHHHHHHHhCCCeEeEECCC-CeEEEEEE
Confidence            45799999764  56788999997 99999999999999999865 68999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.83  E-value=0.0018  Score=62.45  Aligned_cols=54  Identities=19%  Similarity=0.349  Sum_probs=48.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+|+|+|+|..+..+++.++++. ++++.+.+++.+++||.+++ ++++|+|.
T Consensus       158 ~~~~~V~dIMt~~~~~itv~~d~~l~-eAl~lM~e~~i~~LPVVD~~-g~LvGIIT  211 (502)
T PRK07107        158 SLDTKVKDFMTPFEKLVTANEGTTLK-EANDIIWDHKLNTLPIVDKN-GNLVYLVF  211 (502)
T ss_pred             CCCCCHHHHhCCCCCeEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            45688999999988899999999997 99999999999999999754 67999986

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=96.81  E-value=0.0019  Score=48.72  Aligned_cols=52  Identities=19%  Similarity=0.295  Sum_probs=45.5

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|.+  +..+++.+++++ ++++.+.+.+++.+||.++  ++++|+++
T Consensus        63 ~~~~~~v~~~~~~--~~~~i~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~~Gvv~  114 (121)
T cd04584          63 LLLKMPVKEIMTK--DVITVHPLDTVE-EAALLMREHRIGCLPVVED--GRLVGIIT  114 (121)
T ss_pred             hhcCcCHHHHhhC--CCeEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEE
Confidence            3567789999976  578899999997 9999999999999999976  78999987

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.81  E-value=0.0025  Score=47.32  Aligned_cols=41  Identities=20%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.+++++ ++++.+.+.+|+++||++++ ++++|+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~~   42 (113)
T cd04623           2 DVITVRPDATVA-EAAKLMAEKNIGAVVVVDDG-GRLVGIFSE   42 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEeh
Confidence            567889999997 99999999999999999865 789999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.81  E-value=0.0035  Score=46.67  Aligned_cols=50  Identities=24%  Similarity=0.430  Sum_probs=42.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  +...++.+++++ ++++.+.+++..++||.++  ++++|+++
T Consensus        56 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vv~~--~~~~Gvvt  105 (112)
T cd04625          56 LDTTVRAIMNP--EPIVASPDDSID-EVRRLMVERHLRYLPVLDG--GTLLGVIS  105 (112)
T ss_pred             hcCCHHHHhCC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEEC--CEEEEEEE
Confidence            35679999954  577899999997 9999999999999999974  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.78  E-value=0.0023  Score=50.28  Aligned_cols=50  Identities=32%  Similarity=0.436  Sum_probs=43.4

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|++  +...++.+++++ ++++.+.+.++.++||.++  ++++|++.
T Consensus        79 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~--~~~~Gvit  128 (135)
T cd04621          79 VPLVAEDIMTE--EIITVSPNDDVV-DAAKLMLEANISGLPVVDN--DNIVGVIT  128 (135)
T ss_pred             ccccHHHhcCC--CCeEECCCCCHH-HHHHHHHHcCCCEEEEEeC--CEEEEEEE
Confidence            35689999976  456799999997 9999999999999999986  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=96.77  E-value=0.0035  Score=46.18  Aligned_cols=49  Identities=14%  Similarity=0.333  Sum_probs=41.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.++|.|.  ...++.++++. ++++.+.+.+++++||.+++ ++++|++.
T Consensus        51 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~   99 (106)
T cd04582          51 GCCGDHAEPF--KVTVSVDDDLR-IVLSRMFAHDMSWLPCVDED-GRYVGEVT   99 (106)
T ss_pred             cchhhhcccC--CEEECCCCCHH-HHHHHHHHCCCCeeeEECCC-CcEEEEEE
Confidence            3578999764  45689999997 99999999999999999765 78999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.75  E-value=0.0028  Score=47.57  Aligned_cols=50  Identities=18%  Similarity=0.282  Sum_probs=43.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  ++..++.++++. ++++.+.+.+..++||.++  +.++|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~  107 (114)
T cd04630          58 DRVNVYEIMTK--PLISVSPDMDIK-YCARLMERTNIRRAPVVEN--NELIGIIS  107 (114)
T ss_pred             CccCHHHHhcC--CCeeECCCCCHH-HHHHHHHHcCCCEeeEeeC--CEEEEEEE
Confidence            45678899953  678999999997 9999999999999999976  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=96.74  E-value=0.0029  Score=47.33  Aligned_cols=50  Identities=20%  Similarity=0.459  Sum_probs=42.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.+  ...+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit  106 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSRE-EILALMRERSIRHLPILDEE-GRVVGLAT  106 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEE
Confidence            4568899965  466899999997 99999999999999999754 78999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=96.70  E-value=0.0039  Score=46.32  Aligned_cols=51  Identities=20%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++.++|.+.  ..+++.++++. ++++.+.+.+++++||++++.++++|++.
T Consensus        57 ~~~v~~~~~~~--~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt  107 (114)
T cd04613          57 LVVASDIMTKP--PVVVYPEDSLE-DALKKFEDSDYEQLPVVDDDPGKLLGILS  107 (114)
T ss_pred             cEEHHHhccCC--CcEEcCCCCHH-HHHHHHhhCCccEeeEEeCCCCEEEEEEE
Confidence            57899999864  67789999997 99999999999999999763478999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.67  E-value=0.0038  Score=46.15  Aligned_cols=50  Identities=30%  Similarity=0.484  Sum_probs=40.4

Q ss_pred             cccccccccccceEEEEeC-CCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDI-NAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~-~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++.++|.++..  .+.. ++++. ++++.+.+.+++++||.+++ ++++|+++
T Consensus        53 ~~~v~~~~~~~~~--~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvi~  103 (110)
T cd04601          53 DKPVSEVMTPENL--LTTVEGTSLE-EALELLHEHKIEKLPVVDDE-GKLKGLIT  103 (110)
T ss_pred             CCCHHHhcccCce--EEecCCCCHH-HHHHHHHHhCCCeeeEEcCC-CCEEEEEE
Confidence            4678999965443  3444 88886 89999999999999999864 68999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=96.66  E-value=0.0033  Score=46.81  Aligned_cols=50  Identities=16%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  +...++.++++. ++++.+.++++.++||.++  ++++|++.
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it  104 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLF-NALLLMTRHRIHRVVVREG--GEVVGVLE  104 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHH-HHHHHHHHhCccEEEEeeC--CEEEEEEE
Confidence            45678999965  678899999996 9999999999999999975  78999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.66  E-value=0.003  Score=48.84  Aligned_cols=50  Identities=20%  Similarity=0.462  Sum_probs=43.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...++.++|.+  ++..++.++++. ++++.+.+.+++++||.++  +.++|++.
T Consensus        76 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~--~~~iGvit  125 (132)
T cd04636          76 LGKKVEEIMTK--KVITVDEDTTIE-DVARIMSKKNIKRLPVVDD--GKLVGIIS  125 (132)
T ss_pred             cCCCHHHhccC--CceEECCCCcHH-HHHHHHHHCCCCeeEEEEC--CEEEEEEE
Confidence            34478899965  578899999997 9999999999999999986  88999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.65  E-value=0.0038  Score=46.51  Aligned_cols=51  Identities=27%  Similarity=0.527  Sum_probs=43.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.+++++|.+  ++..++.++++. ++++.+.+++..++||.+++  +++|+++.
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~--~~~Gvi~~  106 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLN-EAAKLMAKHGIKRLPVVDDD--ELVGIVTT  106 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHH-HHHHHHHHcCCCeeEEeeCC--EEEEEEEh
Confidence            45678999975  577889999997 99999999999999999864  89999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.64  E-value=0.0035  Score=46.68  Aligned_cols=51  Identities=20%  Similarity=0.367  Sum_probs=43.3

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++++.++|.+  +..+++.++++. ++++.+.+++..++||.+++ ++++|+++.
T Consensus        57 ~~~v~~i~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vv~~~-~~~~Gvvs~  107 (113)
T cd04587          57 STLVERVMTP--NPVCATSDTPVL-EALHLMVQGKFRHLPVVDKS-GQVVGLLDV  107 (113)
T ss_pred             cCCHHHhcCC--CCeEEcCCCCHH-HHHHHHHHcCCCcccEECCC-CCEEEEEEH
Confidence            3678999964  566799999997 99999999999999999875 789999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.64  E-value=0.0038  Score=46.47  Aligned_cols=51  Identities=24%  Similarity=0.424  Sum_probs=43.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+++++|.+  +...++.+++++ ++++.+.+++.+++||.+++ ++++|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~it  106 (113)
T cd04622          56 DTTTVGDVMTR--GVVTVTEDDDVD-EAARLMREHQVRRLPVVDDD-GRLVGIVS  106 (113)
T ss_pred             ccCCHHHhccC--CccEECCCCCHH-HHHHHHHHcCCCeeeEECCC-CcEEEEEE
Confidence            34459999975  567789999997 99999999999999999764 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.61  E-value=0.0027  Score=48.00  Aligned_cols=51  Identities=22%  Similarity=0.456  Sum_probs=44.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.++.++|.+  +...++.++++. ++++.+.+.+++++||+++  +.++|++.
T Consensus        64 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvi~  114 (121)
T cd04633          64 IRNLPVSDIMTR--PVITIEPDTSVS-DVASLMLENNIGGLPVVDD--GKLVGIVT  114 (121)
T ss_pred             hhccCHHHHccC--CceEECCCCcHH-HHHHHHHHcCCCcccEEEC--CEEEEEEE
Confidence            456788899965  677899999997 9999999999999999986  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=96.58  E-value=0.0032  Score=57.06  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=45.4

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+.+|+++|++  +..+++.++++. ++++.+.+++..++||.++  ++++|++.
T Consensus       265 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~--~~lvGiit  316 (326)
T PRK10892        265 DLRQASIADVMTP--GGIRVRPGILAV-DALNLMQSRHITSVLVADG--DHLLGVLH  316 (326)
T ss_pred             CcccCCHHHhcCC--CCEEECCCCCHH-HHHHHHHHCCCcEEEEeeC--CEEEEEEE
Confidence            3557789999986  678899999997 9999999999999999974  68999985

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=96.55  E-value=0.0043  Score=45.51  Aligned_cols=50  Identities=36%  Similarity=0.486  Sum_probs=43.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+..++++|.+  +...++.++++. ++++.+.+++.+++||.++  +.++|+++
T Consensus        49 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it   98 (105)
T cd04599          49 PNRLVADAMTR--EVVTISPEASLL-EAKRLMEEKKIERLPVLRE--RKLVGIIT   98 (105)
T ss_pred             ccCCHHHHccC--CCEEECCCCCHH-HHHHHHHHcCCCEeeEEEC--CEEEEEEE
Confidence            35678999965  577889999997 9999999999999999986  78999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=96.55  E-value=0.0035  Score=60.47  Aligned_cols=53  Identities=17%  Similarity=0.327  Sum_probs=47.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+|+++|+|..++.+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~-eAl~~m~~~~~~~LPVVD~~-g~LvGvIT  213 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLE-EAEAVLKDSKKGKLPLVNED-GELVDLVT  213 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            4678999999988899999999997 99999999999999999753 67999986

>COG0517 FOG: CBS domain [General function prediction only]

Probab=96.54  E-value=0.009  Score=44.63  Aligned_cols=50  Identities=24%  Similarity=0.505  Sum_probs=43.7

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHH-cCCceeeeeeCCCCcEEEEEEe
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILE-KGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~-~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.++|++  ...+++.+++++ ++.+.+.+ .+++++||.+++..+++|+++.
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~-~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~  113 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLE-EALELMVERHKIRRLPVVDDDGGKLVGIITL  113 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHH-HHHHHHHHHcCcCeEEEEECCCCeEEEEEEH
Confidence            79999997  788899999997 99999999 7999999998753489999863

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.54  E-value=0.0053  Score=45.33  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=36.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++++.+++.. ++++.+.+.+++++||++++ ++++|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~v~   41 (106)
T cd04638           2 NVVYVTLPGTRD-DVLELLKEYKVSGVPVVKKS-GELVGIIT   41 (106)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence            678899999997 89999999999999999876 88999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.54  E-value=0.0064  Score=44.99  Aligned_cols=42  Identities=14%  Similarity=0.408  Sum_probs=37.3

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.+++.++++. ++.+.+.+++++.+||.+++.++.+|++.
T Consensus         1 ~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~~~~~~Givt   42 (98)
T cd04618           1 SKLVVFDTKLPVK-KAFNALVENGIRSAPLWDSRKQQFVGMLT   42 (98)
T ss_pred             CeEEEECCCCcHH-HHHHHHHHcCCceEEEEeCCCCEEEEEEE
Confidence            3678999999997 99999999999999999875578999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=96.52  E-value=0.0049  Score=37.89  Aligned_cols=39  Identities=28%  Similarity=0.578  Sum_probs=33.8

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++.+++.. ++.+.+.+.+++++||++++ ++++|++.
T Consensus         2 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~g~i~   40 (49)
T smart00116        2 VVTVSPDTTLE-EALELLREHGIRRLPVVDEE-GRLVGIVT   40 (49)
T ss_pred             ceEecCCCcHH-HHHHHHHHhCCCcccEECCC-CeEEEEEE
Confidence            45678889986 89999999999999999875 78999986

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.51  E-value=0.005  Score=45.88  Aligned_cols=53  Identities=21%  Similarity=0.359  Sum_probs=44.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.+.++.++|.+  +..+++.++++. ++++.+.+++.+++||.+++ ++++|+++.
T Consensus        55 ~~~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvvt~  107 (113)
T cd04615          55 LKDAKVREVMNS--PVITIDANDSIA-KARWLMSNNNISRLPVLDDK-GKVGGIVTE  107 (113)
T ss_pred             hcCCcHHHhccC--CceEECCCCcHH-HHHHHHHHcCCCeeeEECCC-CeEEEEEEH
Confidence            345678899975  577899999997 99999999999999999754 689999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.48  E-value=0.0051  Score=45.76  Aligned_cols=50  Identities=24%  Similarity=0.501  Sum_probs=43.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.++.++|.  .+...++.++++. ++++.+.+++..++||.++  +.++|++..
T Consensus        56 ~~~v~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~G~it~  105 (111)
T cd04626          56 EKKVFNIVS--QDVFYVNEEDTID-EALDIMREKQIGRLPVVDD--NKLIGVVRT  105 (111)
T ss_pred             cCcHHHHhc--CCcEEEcCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEEh
Confidence            467889886  4677899999997 9999999999999999986  789999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=96.47  E-value=0.0038  Score=59.14  Aligned_cols=56  Identities=18%  Similarity=0.386  Sum_probs=48.4

Q ss_pred             HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.  ++..+|+++|.|  ++.+++.++++. ++++.+.+.+++++||++++ ++++|+++
T Consensus       328 ~~~~--l~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~Vvd~~-~~~~Givt  383 (454)
T TIGR01137       328 VFDV--LKNATVKDLHLP--APVTVHPTETVG-DAIEILREYGFDQLPVVTEA-GKVLGSVT  383 (454)
T ss_pred             HHHH--hccCCHHHhCcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            4455  788999999986  588899999997 99999999999999999764 78999986

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=96.45  E-value=0.004  Score=54.66  Aligned_cols=51  Identities=16%  Similarity=0.253  Sum_probs=44.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++++|+|.+  +...++.++++. ++++.+.+++..++||.+++ ++++|+||
T Consensus       218 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~GvI~  268 (268)
T TIGR00393       218 LKSEVRDFMTL--GPKTFKLDALLL-EALEFLERRKITSLVVVDDH-NKVLGVLH  268 (268)
T ss_pred             ccCcHHHhCCC--CCeEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CeEEEEEC
Confidence            35779999965  467899999997 99999999999999999754 58999997

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.40  E-value=0.0065  Score=45.91  Aligned_cols=52  Identities=15%  Similarity=0.373  Sum_probs=43.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++.++|.  .+...++.++++. ++++.+.+.+..++||.+++ ++++|+++
T Consensus        64 ~~~~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit  115 (122)
T cd04803          64 ERDVPVAEVMK--TDVLTVTPDTPLR-EAAEIMVENKIGCLPVVDDK-GTLVGIIT  115 (122)
T ss_pred             ccCcCHHHhhC--CCCeEeCCCCcHH-HHHHHHHHcCCCeEEEEcCC-CCEEEEEE
Confidence            35667888884  4677899999997 99999999999999999764 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=96.40  E-value=0.0073  Score=44.62  Aligned_cols=48  Identities=10%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.++|.+.  ..+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        50 ~~~~~~~~~~--~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~iGvit   97 (104)
T cd04594          50 GDVVDYIVRG--IPYVRLTSTAE-EAWEVMMKNKTRWCPVVDD--GKFKGIVT   97 (104)
T ss_pred             cchhhhhhcC--CcEEcCCCCHH-HHHHHHHHcCcceEEEEEC--CEEEEEEE
Confidence            4588899754  67899999997 9999999999999999973  78999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.40  E-value=0.0025  Score=51.81  Aligned_cols=68  Identities=25%  Similarity=0.425  Sum_probs=51.4

Q ss_pred             CCCCCCHhH---HHHHHhhhcc--ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEE
Q 025093          183 KGGELTHDE---TTIIAGALEL--TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI  255 (258)
Q Consensus       183 ~~g~l~~~E---~~mi~~i~~~--~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv  255 (258)
                      |.|.+++.=   +.+++-..+-  ...+++.+|+  ..++.+..+++++ ++++++.+.|||.+||.++  |.++|=+
T Consensus        39 E~G~vdPrlSt~k~Il~aL~e~e~~~ita~~iM~--spvv~v~pdDsi~-~vv~lM~~~g~SQlPVi~~--~k~VGsI  111 (187)
T COG3620          39 EAGKVDPRLSTVKRILEALEEAEKTRITAKTIMH--SPVVSVSPDDSIS-DVVNLMRDKGISQLPVIEE--DKVVGSI  111 (187)
T ss_pred             hcCCCCccHHHHHHHHHHHHHhhcceEeHhhhcc--CCeeEECchhhHH-HHHHHHHHcCCccCceeeC--Ceeeeee
Confidence            347777642   2233222222  4567889998  6899999999997 9999999999999999987  8888865

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.38  E-value=0.0067  Score=45.99  Aligned_cols=40  Identities=13%  Similarity=0.296  Sum_probs=35.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++.+.+.+++++++||+++ .++++|+++
T Consensus         2 ~~~~i~~~~~l~-~a~~~~~~~~~~~~pVv~~-~~~~~Giv~   41 (120)
T cd04641           2 NIATARPDTPLI-DVLDMLVERRVSALPIVDE-NGKVVDVYS   41 (120)
T ss_pred             CcEEEcCCCCHH-HHHHHHHHcCCCeeeEECC-CCeEEEEEe
Confidence            578899999997 9999999999999999976 578999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.36  E-value=0.0062  Score=45.22  Aligned_cols=50  Identities=22%  Similarity=0.400  Sum_probs=43.0

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.++|.  .++..++.++++. ++.+.+.+++..++||.+++ ++++|++.
T Consensus        55 ~~~v~~~~~--~~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it  104 (111)
T cd04639          55 DAPVRGVMR--RDFPTVSPSATLD-AVLRLMQQGGAPAVPVVDGS-GRLVGLVT  104 (111)
T ss_pred             CCcHHHHhc--CCCcEECCCCcHH-HHHHHHHhcCCceeeEEcCC-CCEEEEEE
Confidence            457889985  4678899999997 99999999999999999764 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.36  E-value=0.0058  Score=46.43  Aligned_cols=51  Identities=20%  Similarity=0.412  Sum_probs=44.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  ++..++.++++. ++++.+.+.+.+++||.+++ ++++|+|+
T Consensus        68 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~~~-~~~~Gvit  118 (125)
T cd04631          68 INEPVRSIMTR--NVITITPDDSIK-DAAELMLEKRVGGLPVVDDD-GKLVGIVT  118 (125)
T ss_pred             hhcCHHHHhcC--CceEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CcEEEEEE
Confidence            45678899864  688999999997 89999999999999999765 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.36  E-value=0.0076  Score=44.59  Aligned_cols=40  Identities=18%  Similarity=0.173  Sum_probs=36.3

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++.++++. ++++.+.+++..|+||.+++.++++|++.
T Consensus        52 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~~~~~~giit   91 (98)
T cd04618          52 LVSIHPERSLF-DAALLLLKNKIHRLPVIDPSTGTGLYILT   91 (98)
T ss_pred             eEEeCCCCcHH-HHHHHHHHCCCCEeeEEECCCCCceEEee
Confidence            77899999997 99999999999999999876578999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.34  E-value=0.0081  Score=45.76  Aligned_cols=46  Identities=26%  Similarity=0.325  Sum_probs=39.1

Q ss_pred             cccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          207 SDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       207 ~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++|.  .++.+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        71 ~~~~~--~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~~vGiit  116 (123)
T cd04627          71 LTIGT--SDVISINGDQPLI-DALHLMHNEGISSVAVVDNQ-GNLIGNIS  116 (123)
T ss_pred             cccCc--CCceEeCCCCCHH-HHHHHHHHcCCceEEEECCC-CcEEEEEe
Confidence            44564  4678899999997 99999999999999999765 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.29  E-value=0.0058  Score=58.85  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=47.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++|+|+|+.++++++.+++++ |+++.+.+++..++||.+++ ++++|++.
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~-eAl~lm~e~~i~~LPVVd~~-g~liGIIT  209 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLE-EANEVLRESRKGKLPIVNDN-GELVALVS  209 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence            3578999999999999999999997 99999999999999999764 67999986

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=96.28  E-value=0.0058  Score=55.41  Aligned_cols=53  Identities=19%  Similarity=0.116  Sum_probs=45.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+|+|+|++..++..++.++++. ++.+.+.+++++.+||.++ .+.++|++.
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~-~a~~~~~~~~~~~~vVvd~-~g~lvGivt  252 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLR-DALLEITRKNLGMTVICDD-NMKIEGIFT  252 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHhcCCCeEEEEcC-CCcEEEEEe
Confidence            6678999999877999999999997 9999999999888788764 368999986

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=96.27  E-value=0.0086  Score=44.88  Aligned_cols=50  Identities=16%  Similarity=0.387  Sum_probs=42.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~  256 (258)
                      .+++++|.+  +...++.++++. ++++.+.+++.+++||.+++. ++++|++.
T Consensus        58 ~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit  108 (115)
T cd04593          58 SAVDEVATP--PLLTVHPDEPLA-HALDRMASRGLRQLPVVDRGNPGQVLGLLT  108 (115)
T ss_pred             ccHHHhccC--CceEECCCCCHH-HHHHHHHHcCCceeeEEeCCCCCeEEEEEE
Confidence            447888864  677899999997 999999999999999997753 67999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=96.22  E-value=0.0086  Score=44.43  Aligned_cols=51  Identities=16%  Similarity=0.397  Sum_probs=43.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+..++++|.+  +..+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus        51 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it  101 (108)
T cd04596          51 PDTTIEKVMTK--NPITVNPKTSVA-SVAHMMIWEGIEMLPVVDDN-KKLLGIIS  101 (108)
T ss_pred             ccccHHHHhcC--CCeEECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CCEEEEEE
Confidence            45679999975  577899999997 99999999999999999754 68999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.21  E-value=0.01  Score=44.38  Aligned_cols=51  Identities=16%  Similarity=0.327  Sum_probs=41.3

Q ss_pred             ccccccccccccceEEEEeCC--CCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDIN--AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~--~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++++|.+  +...++.+  +++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        56 ~~~~i~~~~~~--~~~~v~~~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Gvit  108 (115)
T cd04620          56 SDLPIGEVMTQ--PVVTLQESEIQDIF-TALSLFRQHQIRHLPVLDDQ-GQLIGLVT  108 (115)
T ss_pred             cccCHHHhcCC--CcEEEecccccCHH-HHHHHHHHhCCceEEEEcCC-CCEEEEEE
Confidence            35678899965  56667665  6776 89999999999999999764 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=96.19  E-value=0.0064  Score=47.18  Aligned_cols=51  Identities=24%  Similarity=0.384  Sum_probs=44.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.+  +...++.++++. ++++.+.+.+.+++||.+  .+.++|++.
T Consensus        78 ~~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~l~Vvd--~g~~~Gvit  128 (135)
T cd04586          78 SHGRKVADVMTR--PVVTVGEDTPLA-EVAELMEEHRIKRVPVVR--GGRLVGIVS  128 (135)
T ss_pred             hcCCCHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCccCEec--CCEEEEEEE
Confidence            466789999965  578899999997 999999999999999998  378999986

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.17  E-value=0.0075  Score=44.92  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=42.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.++|.+  +...++.++++. ++++.+.+.+.+++||.++  +.++|++.
T Consensus        59 ~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Gvit  107 (114)
T cd04629          59 VATVRDIMTT--EVLTVSPDDSIV-DLAQLMLKAKPKRYPVVDD--GKLVGQIS  107 (114)
T ss_pred             CccHHHHhcc--CceEECCCCcHH-HHHHHHHHhCCCccCEEEC--CEEEEEEE
Confidence            5678899975  567799999997 9999999999999999986  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.12  E-value=0.0099  Score=44.89  Aligned_cols=51  Identities=20%  Similarity=0.451  Sum_probs=43.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.++.++|.  .+...++.++++. ++++.+.+++.+++||.+++ +.++|++.
T Consensus        65 ~~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~~-g~~~Gvit  115 (122)
T cd04635          65 ASPTVEKIMS--TPVYSVTPDDSIA-TAVELMLEHDIGRLPVVNEK-DQLVGIVD  115 (122)
T ss_pred             ccCcHHHHhc--CCCeeECCCCCHH-HHHHHHHHcCCCeeeEEcCC-CcEEEEEE
Confidence            4567888985  4578899999997 99999999999999999765 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=96.12  E-value=0.01  Score=44.08  Aligned_cols=49  Identities=29%  Similarity=0.476  Sum_probs=42.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++.++|.+  ++..++.++++. ++++.+.+++.+++||.++  +.++|++.
T Consensus        56 ~~~i~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~--~~~~Giit  104 (111)
T cd04800          56 DTPVSEVMTA--PPITIPPDATVF-EALLLMLERGIHHLPVVDD--GRLVGVIS  104 (111)
T ss_pred             cCCHHHHhCC--CCeEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEE
Confidence            4678888854  678899999997 9999999999999999986  78999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.05  E-value=0.0099  Score=46.90  Aligned_cols=51  Identities=20%  Similarity=0.408  Sum_probs=44.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+..+.++|.+  +..+++.+++++ ++++.+.+.+++++||.++  ++++|++..
T Consensus        87 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~  137 (143)
T cd04634          87 GKMKVRDIMTK--KVITISPDASIE-DAAELMVRHKIKRLPVVED--GRLVGIVTR  137 (143)
T ss_pred             hcCCHHHHcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEEH
Confidence            56778999966  577899999997 8999999999999999986  789999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=96.05  E-value=0.013  Score=43.21  Aligned_cols=51  Identities=16%  Similarity=0.341  Sum_probs=43.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+..+.++|.+  +...++.++++. ++++.+.+.+..++||.+++ ++++|++.
T Consensus        54 ~~~~v~~~~~~--~~~~~~~~~~l~-~~l~~~~~~~~~~~~Vv~~~-~~~~Gvi~  104 (111)
T cd04611          54 LQTPVGEVMSS--PLLTVPADTSLY-DARQLMREHGIRHLVVVDDD-GELLGLLS  104 (111)
T ss_pred             CCcCHHHhcCC--CceEECCCCCHH-HHHHHHHHcCCeEEEEECCC-CcEEEEEE
Confidence            45778899865  677899999997 89999999999999999764 67999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=96.04  E-value=0.013  Score=43.49  Aligned_cols=50  Identities=22%  Similarity=0.399  Sum_probs=43.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.|  +...++.++++. ++++.+.+.+..++||.+++ ++++|++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit  101 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQE-EVARLFEKYDLLALPVVDEE-GRLVGIIT  101 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHH-HHHHHHHHcCCceeeeECCC-CcEEEEEE
Confidence            5679999965  478899999997 99999999999999999764 78999986

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=96.01  E-value=0.0066  Score=54.82  Aligned_cols=52  Identities=13%  Similarity=0.122  Sum_probs=45.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+|+++|.+..++.+++.++++. ++.+.+.+++.+.+||.+++ ++.+|++.
T Consensus       196 ~~~V~~im~~~~~~~~v~~~~sv~-~a~~~~~~~~~~~~~Vvd~~-g~~iG~vt  247 (321)
T PRK11543        196 LNKVHHLMRRDDAIPQVALTASVM-DAMLELSRTGLGLVAVCDAQ-QQVQGVFT  247 (321)
T ss_pred             HhHHHHHhccCCCCcEeCCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEec
Confidence            479999999866789999999997 89999999999999999764 78999986

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=96.01  E-value=0.013  Score=44.01  Aligned_cols=52  Identities=19%  Similarity=0.380  Sum_probs=42.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++++|.+....+..+.++++. ++++.+.+++..++||.+++ +.++|++.
T Consensus        56 ~~~v~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~pVv~~~-~~~~Gvit  107 (114)
T cd04602          56 ETPLSEVMTPREVLVVAPTGITLE-EANEILRESKKGKLPIVNDD-GELVALVT  107 (114)
T ss_pred             CCCHHHhcCCCceEEECCCCCCHH-HHHHHHHhcCCCceeEECCC-CeEEEEEE
Confidence            356889997766655555589986 99999999999999999754 57999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=95.94  E-value=0.015  Score=43.14  Aligned_cols=50  Identities=22%  Similarity=0.431  Sum_probs=43.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  +...++.++++. ++++.+.+.+.+++||.+  .++++|++.
T Consensus        54 ~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~~--~~~~~Gvvt  103 (110)
T cd04595          54 GHAPVKDYMST--DVVTVPPDTPLS-EVQELMVEHDIGRVPVVE--DGRLVGIVT  103 (110)
T ss_pred             ccCcHHHHhcC--CCEEECCCCcHH-HHHHHHHHcCCCeeEEEe--CCEEEEEEE
Confidence            46778899975  577899999997 999999999999999998  368999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=95.91  E-value=0.014  Score=44.20  Aligned_cols=52  Identities=27%  Similarity=0.522  Sum_probs=44.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++.++|.+  +..+++.++++. ++++.+.+.+.+++||.++ .++++|+++
T Consensus        66 ~~~~~i~~~~~~--~~~~~~~~~~l~-~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit  117 (124)
T cd04600          66 DKPETVGDIMSP--PVVTVRPDTPIA-ELVPLLADGGHHHVPVVDE-DRRLVGIVT  117 (124)
T ss_pred             cccccHHHhccC--CCeeeCCCCcHH-HHHHHHHhcCCCceeEEcC-CCCEEEEEE
Confidence            356678999965  677899999997 9999999999999999985 378999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=95.89  E-value=0.017  Score=42.56  Aligned_cols=49  Identities=33%  Similarity=0.629  Sum_probs=41.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++|.+  ++..++.++++. ++.+.+.+.+.+++||.+++ ++++|++.
T Consensus        54 ~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~vv~~~-g~~~Gvit  102 (109)
T cd04583          54 KSLEDIMLE--DVFTVQPDASLR-DVLGLVLKRGPKYVPVVDED-GKLVGLIT  102 (109)
T ss_pred             CcHhHhhcC--CceEECCCCcHH-HHHHHHHHcCCceeeEECCC-CeEEEEEe
Confidence            468889975  567899999997 99999999999999999764 58999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=95.88  E-value=0.017  Score=42.68  Aligned_cols=41  Identities=22%  Similarity=0.466  Sum_probs=35.7

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++..++.++++. ++++.+.+++++++||.+++ ++++|+++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~   42 (110)
T cd04605           2 RPVVTISEDASIK-EAAKLMIEENINHLPVVDED-GRLVGIVT   42 (110)
T ss_pred             CCCEEECCCCCHH-HHHHHHHhCCCceEEEECCC-CcEEEEEe
Confidence            3567789999997 99999999999999999764 89999986

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=95.82  E-value=0.018  Score=43.54  Aligned_cols=40  Identities=15%  Similarity=0.372  Sum_probs=35.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++.+.+.+++++++||++++ ++++|+++
T Consensus         3 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~Giv~   42 (124)
T cd04600           3 DVVTVTPDTSLE-EAWALLRRHRIKALPVVDGD-RRLVGIVT   42 (124)
T ss_pred             CcEEeCCCCCHH-HHHHHHHHcCCceeeEECCC-CCEEEEEE
Confidence            567789999997 99999999999999999765 78999986

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=95.78  E-value=0.023  Score=51.29  Aligned_cols=51  Identities=16%  Similarity=0.267  Sum_probs=44.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|++  +...++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus       261 ~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-~~lvGvIt  311 (321)
T PRK11543        261 LTTPVNEAMTR--GGTTLQAQSRAI-DAKEILMKRKITAAPVVDEN-GKLTGAIN  311 (321)
T ss_pred             cCCcHHHhcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            35679999986  677899999997 99999999999999999764 48999985

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=95.74  E-value=0.014  Score=56.77  Aligned_cols=52  Identities=19%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ....|+++|+ +.+..+++.+++++ ++.+.+.+++++++||.+++ ++++|++.
T Consensus       244 ~~~~V~~iM~-~~~~~~~~~~~~~~-~~~~~m~~~~~~~~PVvd~~-g~lvGiit  295 (546)
T PRK14869        244 QSIPVSYIMT-TEDLVTFSKDDYLE-DVKEVMLKSRYRSYPVVDED-GKVVGVIS  295 (546)
T ss_pred             cCCCHHHhcc-CCCcEEECCCCcHH-HHHHHHHhcCCCceEEEcCC-CCEEEEEE
Confidence            3678999998 35789999999997 99999999999999999864 78999986

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.73  E-value=0.021  Score=43.62  Aligned_cols=42  Identities=24%  Similarity=0.245  Sum_probs=37.1

Q ss_pred             cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          213 IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       213 R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+..+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        78 ~~~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-~~~~Giit  119 (126)
T cd04642          78 SRPLITCTPSSTLK-EVITKLVANKVHRVWVVDEE-GKPIGVIT  119 (126)
T ss_pred             cCCCeEECCCCcHH-HHHHHHHHhCCcEEEEECCC-CCEEEEEE
Confidence            45678899999997 99999999999999999865 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.73  E-value=0.023  Score=42.96  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=36.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        74 ~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~~~Givt  113 (120)
T cd04641          74 GVRTCSPDDCLR-TIFDLIVKARVHRLVVVDEN-KRVEGIIS  113 (120)
T ss_pred             CCeEEcCCCcHH-HHHHHHHhcCccEEEEECCC-CCEEEEEE
Confidence            567899999997 99999999999999999865 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.73  E-value=0.02  Score=43.20  Aligned_cols=40  Identities=13%  Similarity=0.395  Sum_probs=35.4

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++..++.++++. ++.+.+.+.+++++||+++  ++.+|+++
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~   40 (122)
T cd04637           1 TRVVTVEMDDRLE-EVREIFEKHKFHHLLVVED--NELVGVIS   40 (122)
T ss_pred             CCceEeCCCCCHH-HHHHHHHhCCCCEEEEEeC--CeEEEEEE
Confidence            3567889999997 8999999999999999986  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.72  E-value=0.017  Score=43.74  Aligned_cols=41  Identities=20%  Similarity=0.447  Sum_probs=36.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++++.+.+++++++||++++.+.++|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~d~~~~~~~G~v~   42 (125)
T cd04631           2 DVVTVPPTTPIM-EAAKIMVRNGFRRLPVVDEGTGKLVGIIT   42 (125)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCcccceeEeCCCCEEEEEEE
Confidence            567789999997 99999999999999999876578999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.71  E-value=0.02  Score=43.58  Aligned_cols=41  Identities=24%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++++.+.+.+++++||++++.++++|+++
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~~~~~~Giv~   42 (123)
T cd04627           2 PFIPVPSTASLF-QAIEILGSGGIHRVAVTEEESGEVIGILS   42 (123)
T ss_pred             CceecCCCCCHH-HHHHHHhhCCcceEEEEeCCCCcEEEEEE
Confidence            467789999997 89999999999999999875578999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=95.70  E-value=0.018  Score=42.62  Aligned_cols=41  Identities=20%  Similarity=0.489  Sum_probs=35.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.+++++ ++++.+.+.+++++||++++ ++.+|+++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~~   42 (114)
T cd04613           2 DVVTIPEDTPLN-ELLDVIAHSPENNFPVVDDD-GRLVGIVSL   42 (114)
T ss_pred             CceeeCCCCcHH-HHHHHHHhCCCcceeEECCC-CCEEEEEEH
Confidence            467789999997 99999999999999999875 789999873

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=95.70  E-value=0.0082  Score=52.44  Aligned_cols=57  Identities=23%  Similarity=0.422  Sum_probs=51.1

Q ss_pred             HHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          195 IAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       195 i~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++....+.+|.++|++  +..+++.|+|+. |+.+.+.+.|..-.||.++  |+++|++.
T Consensus       163 i~~m~siPk~~V~~~~s~--~~i~v~~d~tl~-eaak~f~~~~i~GaPVvd~--dk~vGiit  219 (294)
T COG2524         163 ISKMVSIPKEKVKNLMSK--KLITVRPDDTLR-EAAKLFYEKGIRGAPVVDD--DKIVGIIT  219 (294)
T ss_pred             EeeeeecCcchhhhhccC--CceEecCCccHH-HHHHHHHHcCccCCceecC--CceEEEEE
Confidence            356678899999999996  789999999997 9999999999999999987  59999985

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.66  E-value=0.017  Score=43.59  Aligned_cols=50  Identities=30%  Similarity=0.488  Sum_probs=42.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++++|.  .+...++.+++++ ++++.+.+++.+++||.+++ ++++|++.
T Consensus        66 ~~~~~~~~~--~~~~~v~~~~~l~-~~~~~~~~~~~~~~~vv~~~-~~~~Gvit  115 (122)
T cd04637          66 NRRAHQIMT--RDPITVSPDTPVD-EASKLLLENSISCLPVVDEN-GQLIGIIT  115 (122)
T ss_pred             HhHHHHhhc--CCCeeeCCCCcHH-HHHHHHHHcCCCeEeEECCC-CCEEEEEE
Confidence            346888885  4688899999997 99999999999999999754 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.65  E-value=0.019  Score=43.89  Aligned_cols=41  Identities=24%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++..++.++++. ++++.+.+++++++||.+++ +.++|+++
T Consensus         1 ~~~~~v~~~~~~~-~a~~~~~~~~~~~i~V~d~~-~~~~Giv~   41 (126)
T cd04642           1 SKVVSIDSDERVL-DAFKLMRKNNISGLPVVDEK-GKLIGNIS   41 (126)
T ss_pred             CCeEEECCCccHH-HHHHHHHHhCCCcccEECCC-CcEEEEEE
Confidence            3678899999997 99999999999999999865 88999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.65  E-value=0.028  Score=42.05  Aligned_cols=42  Identities=24%  Similarity=0.333  Sum_probs=36.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.++++. ++++.+.+.+++.+||++++.++++|+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~   43 (114)
T cd04630           2 NVVTIDGLATVA-EALQLMKEHGVSSLVVEKRRESDAYGIVTM   43 (114)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCEEEEEECCCCcEEEEEeh
Confidence            577899999997 999999999999999998755789999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.65  E-value=0.019  Score=43.33  Aligned_cols=40  Identities=20%  Similarity=0.392  Sum_probs=35.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++.+.+.+.+++++||++++ +.++|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~   41 (122)
T cd04803           2 PVVTLSEDDSLA-DAEELMREHRIRHLPVVNED-GKLVGLLT   41 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCcccccEECCC-CCEEEEEE
Confidence            567789999997 99999999999999999764 78999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=95.64  E-value=0.021  Score=42.28  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.+++.+++++ ++.+.+.+++++++||+++ .+.++|+++
T Consensus         2 ~~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~-~~~~~G~v~   42 (108)
T cd04596           2 EDTGYLTTTDTVK-DWHELNKETGHSRFPVVDE-KNKVVGIVT   42 (108)
T ss_pred             CccEEeCCCCCHH-HHHHHHHHcCCCceeEECC-CCeEEEEec
Confidence            4678999999997 9999999999999999975 478999986

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.64  E-value=0.023  Score=42.38  Aligned_cols=40  Identities=20%  Similarity=0.291  Sum_probs=35.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++++.+.+.+++++||+++ .++++|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~Giv~   41 (116)
T cd04643           2 EVAYVQDTNTLR-HALLVLTKHGYSAIPVLDK-EGKYVGTIS   41 (116)
T ss_pred             CcEEECCCCcHH-HHHHHHHHCCCceeeeECC-CCcEEEEEe
Confidence            678899999997 9999999999999999975 367999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.64  E-value=0.023  Score=42.12  Aligned_cols=40  Identities=20%  Similarity=0.303  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.+++++ ++++.+.+++++++||++++ +..+|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~   41 (111)
T cd04626           2 DFPTIDEDASIR-EALHEMLKYNTNEIIVKDNE-EKLKGVVT   41 (111)
T ss_pred             CceEECCCccHH-HHHHHHHHhCCCeEEEEcCC-CCEEEEEe
Confidence            567789999997 89999999999999999763 67899986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=95.59  E-value=0.013  Score=57.46  Aligned_cols=52  Identities=13%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..+|+|+|+|.  ...++.+++++ |+.+.+.+++++++||.|++ ++.+|++.
T Consensus       444 L~~~~V~dim~~~--~~~v~~~~tl~-ea~~~l~~~~~~~~~VvD~~-g~lvGiVt  495 (574)
T PRK01862        444 LRTTQMRELIQPA--QTVVPPTASVA-DMTRVFLEYPVKYLYVVDDD-GRFRGAVA  495 (574)
T ss_pred             HhhCcHHHHhcCC--CceeCCCCCHH-HHHHHHHhCCCceEEEEcCC-CeEEEEEE
Confidence            5678999999874  46689999997 99999999999999999763 67999986

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.57  E-value=0.02  Score=43.75  Aligned_cols=53  Identities=21%  Similarity=0.362  Sum_probs=44.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeC-CCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IvGiv~  256 (258)
                      +.+.+++++|.+  ++.+++.++++. ++++.+.++++..+||.++ +.+.++|++.
T Consensus        68 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit  121 (128)
T cd04632          68 MLDLPVYDAMSS--PVITASPNDSVR-DAVDRMLENDDSSVVVVTPDDDTKVVGILT  121 (128)
T ss_pred             hccCcHHHHhcC--CCceECCCCcHH-HHHHHHHhCCCCeEeEeccCCCCcEEEEEE
Confidence            345679999974  688899999997 9999999999999999964 4467999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=95.56  E-value=0.031  Score=41.37  Aligned_cols=42  Identities=43%  Similarity=0.776  Sum_probs=36.9

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++..++.+++++ ++.+.+.+.+++.+||.+++.+..+|++.
T Consensus         1 ~~~~~i~~~~~i~-~a~~~~~~~~~~~~~v~~~~~~~~~G~v~   42 (111)
T cd04590           1 TDIVALDADDTLE-EILELIAESGHSRFPVYDGDLDNIIGVVH   42 (111)
T ss_pred             CceEEEcCCCCHH-HHHHHHhhCCCceEEEECCCCceEEEEEE
Confidence            4788899999997 99999999999999999875478999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.55  E-value=0.028  Score=41.71  Aligned_cols=40  Identities=20%  Similarity=0.319  Sum_probs=34.6

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~   41 (112)
T cd04624           2 PVVTVDPDTSIR-EAAKLMAEENVGSVVVVDPD-ERPIGIVT   41 (112)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CCEEEEee
Confidence            345688999997 89999999999999999875 78999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=95.54  E-value=0.028  Score=41.62  Aligned_cols=40  Identities=15%  Similarity=0.235  Sum_probs=35.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.+++++ ++.+.+.+.+++++||.++  +.++|+++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~i~V~~~--~~~~G~v~~   41 (111)
T cd04800           2 PPVTCSPDTTIR-EAARLMTEHRVSSLLVVDD--GRLVGIVTD   41 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEEh
Confidence            567789999997 8999999999999999986  899999873

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=95.52  E-value=0.023  Score=42.31  Aligned_cols=43  Identities=19%  Similarity=0.376  Sum_probs=37.2

Q ss_pred             cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025093          213 IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       213 R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~  256 (258)
                      +++...++.+++++ ++.+.+.+.+++++||.++.  .+..+|+++
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~   45 (105)
T cd04591           1 VPLVVLLPEGMTVE-DLESLLSTTSHNGFPVVDSTEESPRLVGYIL   45 (105)
T ss_pred             CCceEEecccccHH-HHHHHHHhCCCCCcceEcCCCCCCEEEEEEe
Confidence            46788899999997 89999999999999999764  477999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=95.51  E-value=0.025  Score=55.45  Aligned_cols=52  Identities=21%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~  256 (258)
                      ++.+++|+|.+  +...++.|++++ ++++.+.+++.+++||.+++. ++++|+++
T Consensus       510 ~~~~v~dim~~--~~~~v~~d~~L~-~al~~m~~~~~~~lpVVd~~~~~~liGvIt  562 (574)
T PRK01862        510 TDKTAADYAHT--PFPLLTPDMPLG-DALEHFMAFQGERLPVVESEASPTLAGVVY  562 (574)
T ss_pred             ccchHHHhccC--CCeeECCCCCHH-HHHHHHHhcCCCeeeeEeCCCCCeEEEEEE
Confidence            34679999975  567899999997 999999999999999998764 46999986

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.40  E-value=0.025  Score=41.86  Aligned_cols=40  Identities=18%  Similarity=0.335  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus         2 ~~~~v~~~~~i~-e~~~~~~~~~~~~~~V~~~~-~~~~G~v~   41 (111)
T cd04639           2 HFETLSPADTLD-DAADALLATTQHEFPVVDGD-GHLVGLLT   41 (111)
T ss_pred             CceEcCCCCcHH-HHHHHHHHcCCCcceEECCC-CcEEEEee
Confidence            567789999997 99999988999999999864 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.39  E-value=0.033  Score=40.79  Aligned_cols=39  Identities=13%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        51 ~~~v~~~~~l~-~a~~~m~~~~~~~lpVv~~~-~~~~Giit   89 (96)
T cd04614          51 VVTATKRTTVS-ECAQKMKRNRIEQIPIINGN-DKLIGLLR   89 (96)
T ss_pred             cEEecCCCCHH-HHHHHHHHhCCCeeeEECCC-CcEEEEEE
Confidence            78899999997 99999999999999999864 78999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=95.37  E-value=0.04  Score=40.67  Aligned_cols=49  Identities=24%  Similarity=0.344  Sum_probs=41.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..++++|.+  +...++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus        55 ~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~v~  103 (110)
T cd04605          55 KSVEDIMTR--NVITATPDEPID-VAARKMERHNISALPVVDAE-NRVIGIIT  103 (110)
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHhCCCEEeEECCC-CcEEEEEE
Confidence            348888864  567789999997 99999999999999999764 78999986

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=95.37  E-value=0.027  Score=42.29  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=35.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.+++++ ++.+.+.+.+++++||++++ ++++|+++
T Consensus         2 ~~~~~~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~   41 (121)
T cd04584           2 DVVTITPTTTIA-EALELMREHKIRHLPVVDEE-GRLVGIVT   41 (121)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCcccEECCC-CcEEEEEE
Confidence            456788999997 99999999999999999875 78999987

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.35  E-value=0.036  Score=40.24  Aligned_cols=40  Identities=23%  Similarity=0.537  Sum_probs=35.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.+++++ ++.+.+.+.+++++||++++ ++++|++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~-~~~~G~v~   41 (113)
T cd02205           2 DVVTVSPDDTVA-EALRLMLEHGISGLPVVDDD-GRLVGIVT   41 (113)
T ss_pred             CceEecCCCCHH-HHHHHHHhcCCceEEEECCC-CCEEEEEe
Confidence            467789999997 99999999999999999875 79999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=95.35  E-value=0.015  Score=45.79  Aligned_cols=50  Identities=16%  Similarity=0.139  Sum_probs=40.0

Q ss_pred             hccccccccccccc-------cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCC
Q 025093          199 LELTEKTASDAMTP-------IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT  249 (258)
Q Consensus       199 ~~~~~~~v~eiM~P-------R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D  249 (258)
                      +.-.+..+.++|+|       +.++.+++.++++. ++++.+.+++.+++||.+++.|
T Consensus        64 ~~~~~~~v~~i~~~~~~~~~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lPVvd~~~~  120 (133)
T cd04592          64 KQTNTCLVSSVCTKGISYGGQECGLWTCTPDTDLT-TAKKLMEAKGVKQLPVVKRGVD  120 (133)
T ss_pred             cccccccHHHHhhhhhhhcccCCCCEEECCCCCHH-HHHHHHHHcCCCcCCEecCCcC
Confidence            33444556678774       46788999999997 9999999999999999987654

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=95.34  E-value=0.022  Score=54.16  Aligned_cols=51  Identities=25%  Similarity=0.345  Sum_probs=44.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++++|+|  +..+++.+++.+ ++++.+.++++..+||.+++ ++++|++.
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~-eal~~m~~~~~~~lpVVD~~-g~lvGiIt  243 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQE-EVARLIQKYDFLAVPVVDNE-GRLVGIVT  243 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHH-HHHHHHHHcCCCEEeEEcCC-CeEEEEEE
Confidence            56789999987  577899999997 99999999999999999754 67999986

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=95.30  E-value=0.03  Score=41.44  Aligned_cols=48  Identities=17%  Similarity=0.187  Sum_probs=39.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..++++|.   +...++.++++. ++++.+.+++.+++||.+++ ++++|+++
T Consensus        57 ~~~~~~~~---~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vv~~~-~~~~Gvit  104 (111)
T cd04590          57 LDLRDLLR---PPLFVPESTPLD-DLLEEMRKERSHMAIVVDEY-GGTAGLVT  104 (111)
T ss_pred             CCHHHHhc---CCeecCCCCcHH-HHHHHHHhcCCcEEEEEECC-CCEEEEeE
Confidence            35666664   357789999997 99999999999999999763 67999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=95.30  E-value=0.021  Score=55.54  Aligned_cols=50  Identities=24%  Similarity=0.365  Sum_probs=44.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+|+|+|.+  +..+++.++++. ++++.+.+++++++||.+++ ++.+|++.
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~l~Givt  116 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLK-EAWNLMDENNVKTLPVVDEE-GKLLGLVS  116 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEE
Confidence            3689999985  788899999997 99999999999999999864 78999986

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.30  E-value=0.036  Score=41.06  Aligned_cols=50  Identities=18%  Similarity=0.284  Sum_probs=42.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++++|.+  +...++.++++. ++++.+.+++.+++||.+++ +.++|++.
T Consensus        56 ~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-g~~~Gilt  105 (112)
T cd04624          56 DTPVSEIMTR--DLVTVDPDEPVA-EAAKLMRKNNIRHHLVVDKG-GELVGVIS  105 (112)
T ss_pred             ccCHHHhccC--CCEEECCCCcHH-HHHHHHHHcCccEEEEEcCC-CcEEEEEE
Confidence            4568888864  577899999997 89999999999999999865 67999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.29  E-value=0.038  Score=42.21  Aligned_cols=40  Identities=20%  Similarity=0.485  Sum_probs=35.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++++.+.+.+++.+||++++ +.++|++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~~~~~~~~~~~Vv~~~-~~~~G~it   41 (128)
T cd04632           2 DVITVREDDSVG-KAINVLREHGISRLPVVDDN-GKLTGIVT   41 (128)
T ss_pred             CceEeCCCCCHH-HHHHHHHHcCCCEEEEECCC-CcEEEEEE
Confidence            567789999997 99999999999999999875 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=95.25  E-value=0.038  Score=40.72  Aligned_cols=41  Identities=15%  Similarity=0.201  Sum_probs=35.6

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +++.+++.+++++ ++.+.+.+.+++++||+++  ++.+|+++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~~   41 (111)
T cd04611           1 TQILTCPPDTSLA-EAASRMRERRISSIVVVDD--GRPLGIVTE   41 (111)
T ss_pred             CCceEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEeH
Confidence            3567889999997 9999999999999999987  889999863

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.24  E-value=0.025  Score=42.14  Aligned_cols=49  Identities=22%  Similarity=0.420  Sum_probs=40.1

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++++.++|.|  +..+++.++++. ++++.+.+.+  .+||.+++ ++++|++.
T Consensus        61 ~~~~v~~~~~~--~~~~v~~~~~l~-~a~~~~~~~~--~~~Vv~~~-~~~~Gvit  109 (116)
T cd04643          61 VDLKVIDVMNT--DVPVIIDDADIE-EILHLLIDQP--FLPVVDDD-GIFIGIIT  109 (116)
T ss_pred             hCCcHHHHhcC--CCceecCCCCHH-HHHHHHhcCC--ceeEEeCC-CeEEEEEE
Confidence            57789999977  467789999997 8999998755  59999754 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=95.20  E-value=0.037  Score=40.64  Aligned_cols=39  Identities=18%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++.+.+.+.+++++||.++  ++++|++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~   40 (110)
T cd04609           2 DVVSVAPDDTVS-QAIERMREYGVSQLPVVDD--GRVVGSID   40 (110)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCceeeEeeC--CeeEEEEe
Confidence            467789999997 9999999999999999986  89999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=95.13  E-value=0.043  Score=40.33  Aligned_cols=40  Identities=23%  Similarity=0.511  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.++++. ++.+.+.+++++++||.+++ ++++|+++
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~   42 (110)
T cd04601           3 DPITVSPDATVA-EALELMAEYGISGLPVVDDD-GKLVGIVT   42 (110)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHcCCceEEEEcCC-CEEEEEEE
Confidence            567789999997 89999999999999999865 88999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=95.12  E-value=0.038  Score=41.34  Aligned_cols=39  Identities=21%  Similarity=0.434  Sum_probs=34.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.+++++ ++++.+.+.+++++||.++  ++++|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~i~   40 (122)
T cd04585           2 NPITVTPDTSLM-EALKLMKENSIRRLPVVDR--GKLVGIVT   40 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHhCCcceeeEecC--CeEEEEEe
Confidence            457789999997 9999999999999999987  89999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.09  E-value=0.032  Score=53.55  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=44.1

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++|+|++  +..+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus       147 ~~~V~diMt~--~~itV~~d~sL~-eAl~lM~~~~i~~LPVVD~~-g~lvGIIT  196 (479)
T PRK07807        147 FTQVRDVMST--DLVTLPAGTDPR-EAFDLLEAARVKLAPVVDAD-GRLVGVLT  196 (479)
T ss_pred             CCCHHHhccC--CceEECCCCcHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEE
Confidence            3679999985  788999999997 99999999999999999764 68999985

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=95.09  E-value=0.047  Score=40.17  Aligned_cols=36  Identities=17%  Similarity=0.274  Sum_probs=32.4

Q ss_pred             EEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          218 AIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       218 ~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.++++. ++++.+.+.+++++||+++  ++.+|+++
T Consensus         5 ~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~   40 (104)
T cd04594           5 KVKDYDKVY-EAKRIMIENDLLSLPVVDY--NKFLGAVY   40 (104)
T ss_pred             EECCCCCHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEE
Confidence            578899997 9999999999999999986  88999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=95.07  E-value=0.045  Score=40.47  Aligned_cols=39  Identities=26%  Similarity=0.471  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.++++. ++.+.+.+.+++++||+++  ++.+|++.
T Consensus         3 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~   41 (110)
T cd04595           3 PVKTVRPEATIE-EARELLLRYGHTALPVVEG--GRVVGIIS   41 (110)
T ss_pred             CceEeCCCCcHH-HHHHHHHHcCCCeeeEeeC--CEEEEEEE
Confidence            567889999997 8999999999999999987  88999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=95.07  E-value=0.045  Score=40.51  Aligned_cols=39  Identities=15%  Similarity=0.388  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.+++++ ++++.+.+.+++++||+++  ++++|++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~i~   40 (113)
T cd04622           2 DVVTVSPDDTIR-EAARLMREHDVGALPVCEN--DRLVGIVT   40 (113)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEE
Confidence            567789999997 9999999999999999986  89999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=95.06  E-value=0.046  Score=40.35  Aligned_cols=49  Identities=24%  Similarity=0.378  Sum_probs=41.7

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++|.  .+...++.++++. ++++.+.+.+...+||.+++ +.++|++.
T Consensus        55 ~~v~~~~~--~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~  103 (110)
T cd04588          55 AKVKDVMT--KDVITIDEDEQLY-DAIRLMNKHNVGRLIVTDDE-GRPVGIIT  103 (110)
T ss_pred             cCHHHHhc--CCceEECCCCCHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEE
Confidence            56788885  4778899999997 99999999999999999764 68999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=95.05  E-value=0.04  Score=40.60  Aligned_cols=39  Identities=18%  Similarity=0.531  Sum_probs=34.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.+.+++++||+++  +..+|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~   40 (111)
T cd04612           2 DVVTVPVDLTVD-EVLALMFGERHRGYPVVDD--GRLVGIVT   40 (111)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcceEeeC--CeEEEEEE
Confidence            456788999997 9999999999999999987  88999987

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=95.02  E-value=0.034  Score=53.32  Aligned_cols=50  Identities=10%  Similarity=0.222  Sum_probs=43.9

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..++++|++  +..+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus       145 ~~~V~dIMt~--~litv~~~~sL~-eAl~lM~~~~i~~LPVVD~~-g~LvGIIT  194 (475)
T TIGR01303       145 FTQVRDIMST--DLVTAPADTEPR-KAFDLLEHAPRDVAPLVDAD-GTLAGILT  194 (475)
T ss_pred             CCCHHHHccC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            3679999985  688899999997 99999999999999999754 67999985

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=94.96  E-value=0.052  Score=40.03  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=34.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.+++++ ++.+.+.+.+++++||+++  +..+|+++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~~   41 (110)
T cd04588           2 PLITLNPNATLR-EAARLFNTHHIHGAPVVDD--GKLVGIVTL   41 (110)
T ss_pred             CcEEECCCCCHH-HHHHHHHHcCCCEEEEeeC--CEEEEEEEH
Confidence            466788999997 8999999999999999987  789999873

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=94.95  E-value=0.056  Score=39.63  Aligned_cols=41  Identities=17%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++..++.+++++ ++.+.+.+.+++++||++++ +..+|+++
T Consensus         2 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~   42 (109)
T cd04583           2 KNPVTITPDRTLA-EAIKLMRDKKVDSLLVVDKD-NKLLGIVS   42 (109)
T ss_pred             CCCEEECCCCCHH-HHHHHHHHCCCceEEEEcCC-CcEEEEEE
Confidence            3566789999997 89999999999999999864 78999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=94.88  E-value=0.057  Score=39.40  Aligned_cols=40  Identities=18%  Similarity=0.319  Sum_probs=34.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.++++. ++++.+.+.+++++||.++  ++++|+++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~Giv~~   41 (105)
T cd04599           2 DPITIDPLDSVG-RAARLMEKHRIGGLPVVED--GKLVGIITS   41 (105)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEeh
Confidence            456789999997 8999999999999999973  789999863

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.86  E-value=0.059  Score=39.40  Aligned_cols=40  Identities=13%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++++.+.+.+++.+||.+++ +..+|++.
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~   41 (96)
T cd04614           2 NVPTVWEETPLP-VAVRIMELANVKALPVLDDD-GKLSGIIT   41 (96)
T ss_pred             CccEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEE
Confidence            567899999997 89999999999999999753 78899986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.83  E-value=0.053  Score=40.73  Aligned_cols=40  Identities=18%  Similarity=0.409  Sum_probs=35.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++..++.++++. ++.+.+.+.+++++||+++  ++++|+++.
T Consensus         2 ~~~~i~~~~~~~-~~~~~l~~~~~~~i~V~~~--~~~~G~v~~   41 (121)
T cd04633           2 PVITVSPDDRVS-HARRLMLDHDISRLPVIEG--GKLVGIVTE   41 (121)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCeeEEEEC--CEEEEEEch
Confidence            467789999997 9999999999999999986  899999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.75  E-value=0.052  Score=40.83  Aligned_cols=40  Identities=25%  Similarity=0.500  Sum_probs=34.9

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++.++++. ++.+.+.+.+++++||+++ .+.++|++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~d~-~~~~~G~v~   41 (122)
T cd04635           2 EPVTCTPDDPVS-KVWDLMLESGFTGLPVVQK-AGELIGIIT   41 (122)
T ss_pred             CCEEeCCCCcHH-HHHHHHHHcCCCcccEECC-CCcEEEEEE
Confidence            567889999997 8999999999999999964 478999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=94.75  E-value=0.065  Score=39.20  Aligned_cols=40  Identities=20%  Similarity=0.525  Sum_probs=35.0

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++..++.+.+++ ++++.+.+.+++++||.++  ++++|+++
T Consensus         2 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~--~~~~g~v~   41 (107)
T cd04610           2 RDVITVSPDNTVK-DVIKLIKETGHDGFPVVDN--GKVVGIVS   41 (107)
T ss_pred             CCcEEECCCCcHH-HHHHHHHHcCCCeeeEeEC--CEEEEEEE
Confidence            3577889999997 8999998889999999975  88999987

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=94.74  E-value=0.043  Score=40.61  Aligned_cols=41  Identities=15%  Similarity=0.229  Sum_probs=34.9

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++..++.++++. ++++.+.+++++++||++++ +..+|+++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~   42 (114)
T cd04604           2 DALPLVSPDTSLK-DALLEMSRKGLGMTAVVDED-GRLVGIFT   42 (114)
T ss_pred             CcccccCCCCcHH-HHHHHHHhcCccEEEEEcCC-CCEEEEec
Confidence            3566788999997 89999998999999999764 68999987

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.71  E-value=0.07  Score=39.45  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=34.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++++.+.+++++++||.+++  +++|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~--~~~G~v~   40 (112)
T cd04802           2 NVITVDPDTTVY-EAANIMTENNIGRLIVVDNE--KPVGIIT   40 (112)
T ss_pred             CcEEECCCCCHH-HHHHHHHHCCCCEEEEEECC--EEEEEEE
Confidence            456789999997 89999999999999999864  8999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=94.68  E-value=0.068  Score=39.11  Aligned_cols=40  Identities=13%  Similarity=0.277  Sum_probs=34.4

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.+++++ ++++.+.+.+++++||++++ ++++|++.
T Consensus         2 ~~~~v~~~~~~~-~a~~~~~~~~~~~~~v~d~~-g~~~Giv~   41 (106)
T cd04582           2 EPITVRPDDPLS-DALGLMDDSDLRALTVVDAD-GQPLGFVT   41 (106)
T ss_pred             CCcEecCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEe
Confidence            567789999997 89999999999999999754 78999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=94.66  E-value=0.068  Score=39.55  Aligned_cols=39  Identities=15%  Similarity=0.304  Sum_probs=34.0

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.+++++ ++++.+.+.+++++||+++  ++++|+++
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~--~~~~G~v~   40 (111)
T cd04589           2 PPLIVDASTSIR-DAARLMREHGADALLVRDG--DPRLGIVT   40 (111)
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEecC--CeEEEEEE
Confidence            346788999997 8999999999999999987  78999987

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=94.55  E-value=0.072  Score=39.18  Aligned_cols=49  Identities=18%  Similarity=0.381  Sum_probs=41.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++|.+  ++..++.++++. ++++.+.+.+.+.+||.++ .++++|++.
T Consensus        56 ~~~~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~-~~~~~G~it  104 (111)
T cd04612          56 VLVGDVMTR--DPVTASPDETLR-DALKRMAERDIGRLPVVDD-SGRLVGIVS  104 (111)
T ss_pred             cCHHHhccC--CCeEECCCCCHH-HHHHHHHhCCCCeeeEEcC-CCCEEEEEE
Confidence            456777764  578899999997 8999999999999999976 367999986

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=94.55  E-value=0.041  Score=48.22  Aligned_cols=50  Identities=16%  Similarity=0.185  Sum_probs=43.6

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|+++|.+. ++..++.++++. ++++.+.+.+++.+||.+++ ++.+|++.
T Consensus       155 ~~v~~im~~~-~~~~v~~~~~v~-~a~~~~~~~~~~~~~Vvd~~-g~~~Givt  204 (268)
T TIGR00393       155 VKVKDLMQTT-DLPLIAPTTSFK-DALLEMSEKRLGSAIVCDEN-NQLVGVFT  204 (268)
T ss_pred             hhHHHHhCCC-CCCcCCCCCcHH-HHHHHHhhcCCcEEEEEeCC-CCEEEEEE
Confidence            7899999875 377899999997 89999999999999999764 78999986

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.53  E-value=0.071  Score=39.15  Aligned_cols=49  Identities=22%  Similarity=0.400  Sum_probs=40.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.++|.+  +..+++.++++. ++++.+.+++..++||.++  ++++|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~Vvd~--~~~~G~it   99 (106)
T cd04638          51 EEQLALLMTR--DPPTVSPDDDVK-EAAKLMVENNIRRVPVVDD--GKLVGIVT   99 (106)
T ss_pred             cchHHHHhcC--CCceECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            3457778864  567789999996 9999999999999999975  58999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=94.35  E-value=0.063  Score=51.17  Aligned_cols=52  Identities=25%  Similarity=0.436  Sum_probs=45.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|+| .++.+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus       141 ~~~~V~dvm~~-~~~~~V~~~~sl~-eal~~m~~~~~~~lpVVDe~-G~lvGiVT  192 (450)
T TIGR01302       141 KGKPVSEVMTR-EEVITVPEGIDLE-EALKVLHEHRIEKLPVVDKN-GELVGLIT  192 (450)
T ss_pred             CCCCHHHhhCC-CCCEEECCCCcHH-HHHHHHHHcCCCeEEEEcCC-CcEEEEEE
Confidence            36789999986 5788999999997 99999999999999999764 67999986

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=94.32  E-value=0.089  Score=39.22  Aligned_cols=39  Identities=18%  Similarity=0.313  Sum_probs=33.8

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...++.++++. ++.+.+.+.+++++||++++ ++.+|+++
T Consensus         3 ~~~v~~~~~~~-~~~~~~~~~~~~~~~V~d~~-~~~~G~v~   41 (115)
T cd04593           3 PPVLSATTPLR-EAAEQLIESKHGSALVVDRD-GGVVGIIT   41 (115)
T ss_pred             CcEeCCCCCHH-HHHHHHHhCCCcEEEEEcCC-CCEEEEEE
Confidence            45678899997 89999999999999999764 78999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=94.17  E-value=0.15  Score=36.86  Aligned_cols=47  Identities=30%  Similarity=0.591  Sum_probs=39.9

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       206 v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++|.  .+...++.++++. ++++.+.+.+.+.+||.+++ +.++|++.
T Consensus        60 ~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~i~  106 (113)
T cd02205          60 VGDVMT--RDVVTVSPDTSLE-EAAELMLEHGIRRLPVVDDE-GRLVGIVT  106 (113)
T ss_pred             HHHHhc--CCceecCCCcCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEE
Confidence            567775  4677788999997 99999999999999999876 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=94.14  E-value=0.11  Score=38.47  Aligned_cols=40  Identities=20%  Similarity=0.274  Sum_probs=34.7

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++..++.+++++ ++.+.+.+.+++++||.++  ++++|++.
T Consensus         1 ~~~~~v~~~~~~~-~~~~~~~~~~~~~~~V~~~--~~~~G~v~   40 (113)
T cd04587           1 TKPATVSPTTTVQ-EAAKLMREKRVSCVLVMDG--NKLVGIFT   40 (113)
T ss_pred             CCCeEeCCCCCHH-HHHHHHHHcCCCeEEEEEC--CEEEEEEE
Confidence            3567789999997 8999999999999999975  88999986

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=94.02  E-value=0.11  Score=38.51  Aligned_cols=43  Identities=21%  Similarity=0.417  Sum_probs=37.3

Q ss_pred             cccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          209 AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       209 iM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|.+  +..+++.++++. ++++.+.+++..++||.++  ++++|++.
T Consensus        56 ~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~pVv~~--~~~~Gvvt   98 (105)
T cd04591          56 YIDP--SPFTVSPRTSLE-KVHQLFRKLGLRHLLVVDE--GRLVGIIT   98 (105)
T ss_pred             hccC--CCceECCCCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEE
Confidence            7764  677899999997 9999999999999999953  68999986

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=94.00  E-value=0.082  Score=51.01  Aligned_cols=63  Identities=17%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             hHHHHHHhhhc---cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          190 DETTIIAGALE---LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       190 ~E~~mi~~i~~---~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+++|..+++.   =.+.+|++|||  .++.+++.++.+= |++-.+.+.+.-|+||+++  ++++|+++.
T Consensus       197 T~~dl~~~v~~~g~~~~~~V~evmT--~p~~svd~~~~~f-eAml~m~r~~I~hl~V~e~--gq~~Gilt~  262 (610)
T COG2905         197 TRKDLRSRVIADGRSKTQKVSEVMT--SPVISVDRGDFLF-EAMLMMLRNRIKHLPVTED--GQPLGILTL  262 (610)
T ss_pred             ehHHHHHHHHhcCCCcccchhhhhc--cCceeecCcchHH-HHHHHHHHhCCceeeeecC--CeeeEEeeH
Confidence            46788888885   23578999999  6899999999995 9999999999999999987  799999975

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=93.98  E-value=0.12  Score=39.56  Aligned_cols=41  Identities=22%  Similarity=0.414  Sum_probs=35.3

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+...++.++++. ++.+.+.+++++++||.+++ ++.+|++.
T Consensus         2 ~~~~~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~Gii~   42 (124)
T cd04608           2 KAPVTVLPTVTCA-EAIEILKEKGFDQLPVVDES-GKILGMVT   42 (124)
T ss_pred             CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence            3567889999997 99999999999999999764 78999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=93.81  E-value=0.1  Score=39.04  Aligned_cols=51  Identities=20%  Similarity=0.337  Sum_probs=40.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCc---eeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS---RVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~S---R~PVy~~~~D~IvGiv~  256 (258)
                      ++.++.++|.+  +...++.+++++ ++++.+.+++..   .+||.+++ +.++|++.
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~vv~~~-~~~~Gvvs  112 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLE-EVSRLATGRDSQNLYDGFIVTEE-GRYLGIGT  112 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHH-HHHHHHHcCCcccccccEEEeeC-CeEEEEEE
Confidence            56789999975  577899999997 999999888753   45677654 78999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=93.79  E-value=0.11  Score=38.62  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.+.+ ++++||.++ .++++|+++
T Consensus         2 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~V~d~-~~~~~G~v~   42 (114)
T cd04801           2 DFPTVPAHLTLR-EFVREYVLGSNQRRFVVVDN-EGRYVGIIS   42 (114)
T ss_pred             CcceeCCCCCHH-HHHHHHhccCCceeEEEEcC-CCcEEEEEE
Confidence            567789999997 8999887665 899999975 378999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.72  E-value=0.096  Score=38.76  Aligned_cols=40  Identities=18%  Similarity=0.315  Sum_probs=33.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.+.+++++||++++ +..+|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~V~~~~-~~~~G~v~   41 (114)
T cd04629           2 NPVTFTPDMSVT-EAVEKLLKSKISGGPVVDDN-GNLVGFLS   41 (114)
T ss_pred             CCeEeCCCCCHH-HHHHHHHhcCCCCccEECCC-CeEEEEee
Confidence            456788999997 89999988999999999753 67999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=93.68  E-value=0.17  Score=37.64  Aligned_cols=40  Identities=28%  Similarity=0.431  Sum_probs=34.6

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+++.++++. ++.+.+.+++++++||.+++ ++++|++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~V~d~~-~~~~G~v~   41 (111)
T cd04603           2 QTVSVNCENPLR-EAIKMINELGARAVVVVDEE-NKVLGQVT   41 (111)
T ss_pred             ceEEeCCCCcHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence            467889999997 89999999999999999753 68999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=93.68  E-value=0.16  Score=49.01  Aligned_cols=81  Identities=9%  Similarity=0.252  Sum_probs=57.3

Q ss_pred             cccHHHHHHHHHhhcccccCCCCC-----CHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~  238 (258)
                      .+|+.++-.-+...   + --|.+     -+++.+.++++-+.+     +.|++  +.++++.++++. ++++.+.+.++
T Consensus        60 ~vt~~~ma~a~a~~---G-glGvi~~~~~~e~~~~~v~kvk~~e-----~g~i~--dpvtv~pd~tv~-eA~~lm~~~~~  127 (495)
T PTZ00314         60 TVTEHKMAIAMALM---G-GIGVIHNNCSIEEQVEEVRKVKRFE-----NGFIM--DPYVLSPNHTVA-DVLEIKEKKGF  127 (495)
T ss_pred             ccccHHHHHHHHHC---C-CeEEecCCCCHHHHHHHHhhccccc-----ccccc--CCeecCCCCCHH-HHHHHHHHcCC
Confidence            46777776666531   1 11222     235677777776544     46653  557899999997 99999999999


Q ss_pred             ceeeeeeCC--CCcEEEEEE
Q 025093          239 SRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       239 SR~PVy~~~--~D~IvGiv~  256 (258)
                      +++||.+++  .++++|+++
T Consensus       128 s~vpVvd~~~~~gkLvGIVt  147 (495)
T PTZ00314        128 SSILITVDGKVGGKLLGIVT  147 (495)
T ss_pred             cEEEEEeCCccCCeEEEEEE
Confidence            999999864  367999986

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=93.68  E-value=0.17  Score=37.80  Aligned_cols=40  Identities=25%  Similarity=0.325  Sum_probs=34.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.++++..+||.+++ ++.+|++.
T Consensus         2 ~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-g~~~G~vt   41 (114)
T cd04619           2 RLAKIDVNATLQ-RAAKILGEPGIDLVVVCDPH-GKLAGVLT   41 (114)
T ss_pred             ceEEECCCCcHH-HHHHHHHhcCCCEEEEECCC-CCEEEEEe
Confidence            467789999997 99999999999999999764 68999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=93.24  E-value=0.14  Score=49.25  Aligned_cols=51  Identities=24%  Similarity=0.400  Sum_probs=44.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|++ .++++++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus       146 ~~~V~dim~~-~~~v~v~~~~sl~-eal~~m~~~~~~~lpVVDe~-g~lvGiIT  196 (486)
T PRK05567        146 SQPVSEVMTK-ERLVTVPEGTTLE-EALELLHEHRIEKLPVVDDN-GRLKGLIT  196 (486)
T ss_pred             CCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEE
Confidence            4679999984 4678899999997 99999999999999999865 68999985

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=93.20  E-value=0.17  Score=37.68  Aligned_cols=42  Identities=14%  Similarity=0.389  Sum_probs=35.1

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~  256 (258)
                      .+...++.++++. ++++.+.+.+++++||.++.  .++++|++.
T Consensus         2 ~~~~~i~~~~~~~-~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~   45 (114)
T cd04602           2 TDPSVLSPDHTVA-DVLEIKEKKGFSGIPVTEDGKSGGKLLGIVT   45 (114)
T ss_pred             CCCeEcCCCCCHH-HHHHHHHHcCCCceEEeeCCCcCCEEEEEEE
Confidence            3556788999997 89999999999999999863  478999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=93.12  E-value=0.18  Score=45.12  Aligned_cols=53  Identities=19%  Similarity=0.303  Sum_probs=46.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+...+++.||+|  .+.++..|++.. |++..+.+.|+--+||.++ .+.++||+.
T Consensus       311 ~~~~~~vk~imt~--~v~tv~pdtpa~-~lvp~lad~g~H~lpvld~-~g~lvGIvs  363 (382)
T COG3448         311 FLRPPTVKGIMTT--PVVTVRPDTPAV-ELVPRLADEGLHALPVLDA-AGKLVGIVS  363 (382)
T ss_pred             ccCCCcccccccC--cceeecCCCcHH-HHHHHhhcCCcceeeEEcC-CCcEEEEee
Confidence            4577899999996  467889999986 9999999999999999986 489999985

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=93.10  E-value=0.26  Score=47.75  Aligned_cols=82  Identities=12%  Similarity=0.182  Sum_probs=57.4

Q ss_pred             cccHHHHHHHHHhhcccccC----CCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCc
Q 025093          164 LFRRAELKTLVNLHGNEAGK----GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS  239 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~----~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~S  239 (258)
                      ..|+.++-..+...   ++=    .+.=.++..+.++.+.+..     ..|+  .+.++++.++++. ++++.+.+++++
T Consensus        64 ~vt~~~lA~Ama~a---GGiGfI~~~as~E~q~~~Irkvk~~~-----~gmi--~dpvtV~pd~tV~-dA~~lm~~~~~~  132 (505)
T PLN02274         64 TVTESDMAIAMAAL---GGIGIVHYNNTAEEQAAIVRKAKSRR-----VGFV--SDPVVKSPSSTIS-SLDELKASRGFS  132 (505)
T ss_pred             ccchHHHHHHHHhC---CCeEEEcCCCCHHHHHHHHHHhhccc-----cccc--CCCeeeCCCCcHH-HHHHHHHhcCCc
Confidence            45677776666521   100    0111345567888888542     2366  4778899999997 999999999999


Q ss_pred             eeeeeeCC--CCcEEEEEE
Q 025093          240 RVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       240 R~PVy~~~--~D~IvGiv~  256 (258)
                      .+||.+++  .+.++|+|.
T Consensus       133 ~lpVvD~~~~~GklvGIVT  151 (505)
T PLN02274        133 SVCVTETGTMGSKLLGYVT  151 (505)
T ss_pred             eEEEEeCCCcCCeEEEEEE
Confidence            99999764  367999986

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.80  E-value=0.25  Score=36.46  Aligned_cols=39  Identities=15%  Similarity=0.388  Sum_probs=33.6

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...++.++++. ++++.+.+++++++||.+++ +..+|++.
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~vvd~~-~~~~G~v~   41 (113)
T cd04615           3 PSCVVLNTDIA-RAVAEMYTSGSRALPVVDDK-KRLVGIIT   41 (113)
T ss_pred             CEEeeCCCcHH-HHHHHHHHcCCceEeEEcCC-CCEEEEEE
Confidence            46688999997 89999999999999999764 78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=92.76  E-value=0.15  Score=44.72  Aligned_cols=50  Identities=18%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+|+|+|.+  ++++++.|+.+- |+++.+..++.-|+-|.+. .+..+|++.
T Consensus       233 ~~kV~~~M~k--~vitI~eDe~i~-dAir~M~~~nVGRLlV~ds-~gkpvGiIT  282 (294)
T COG2524         233 DAKVSDYMRK--NVITINEDEDIY-DAIRLMNKNNVGRLLVTDS-NGKPVGIIT  282 (294)
T ss_pred             cccHHHHhcc--CCceEcCchhHH-HHHHHHHhcCcceEEEEcc-CCcEEEEEe
Confidence            5789999985  899999999997 9999999999999999964 488999974

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=92.74  E-value=0.17  Score=37.04  Aligned_cols=48  Identities=23%  Similarity=0.318  Sum_probs=37.1

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.++|.+  +...++.++++. ++.+.+.+ . ...||.+++ ++++|+++
T Consensus        56 ~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~-~-~~~~vv~~~-~~~~Gvvt  103 (110)
T cd04609          56 SLPVREVMGE--PLPTVDPDAPIE-ELSELLDR-G-NVAVVVDEG-GKFVGIIT  103 (110)
T ss_pred             CcCHHHHhcC--CCceeCCCCcHH-HHHHHHHh-C-CceeEEecC-CeEEEEEe
Confidence            4678888854  577899999996 88888877 3 347888764 67999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=92.71  E-value=0.24  Score=37.68  Aligned_cols=40  Identities=25%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+++.+++++ ++++.+.++++..+||.+++ ++++|+++
T Consensus         2 ~~~~v~~~~~i~-~a~~~~~~~~~~~~~V~d~~-~~~~Giv~   41 (126)
T cd04640           2 KPIVIPADTSID-EALELMIKHGVRLLLVVDSD-DNFIGVIT   41 (126)
T ss_pred             CCeEECCCCcHH-HHHHHHHHcCCcEEEEEcCC-CcEEEEEE
Confidence            356789999997 89999988888899999754 78999987

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=92.69  E-value=0.18  Score=37.67  Aligned_cols=39  Identities=13%  Similarity=0.253  Sum_probs=33.5

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.+.+ ++++||.++  ++++|++.
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Vvd~--~~~~G~v~   41 (119)
T cd04598           2 PAPTVSPDTTVN-DVLERFERDPDLSALAVVDD--GRPVGLIM   41 (119)
T ss_pred             CcCccCCCCcHH-HHHHHHHhCCCccEEEEEEC--CeeEEEEE
Confidence            345678899997 8999998887 899999987  89999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=91.98  E-value=0.72  Score=43.99  Aligned_cols=68  Identities=22%  Similarity=0.333  Sum_probs=57.6

Q ss_pred             CCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC---ceeeeeeCC-CCcEEEEEE
Q 025093          186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH---SRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       186 ~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~---SR~PVy~~~-~D~IvGiv~  256 (258)
                      .++++|++-++..+...+-++..+|+  ++.++++.+.|++ ++++.+++.+.   +++.+|==| .....|++.
T Consensus       114 ~l~~~~r~~v~~~l~y~e~taG~~Mt--~e~v~l~~~~Tv~-~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvs  185 (451)
T COG2239         114 LLDPEERARVRQLLSYPEDTAGRIMT--TEFVTLPEDVTVD-EALDRIRERAEDAETIYYLYVVDEKGKLLGVVS  185 (451)
T ss_pred             hCCHHHHHHHHHhcCCChhhhhccce--eeeEEeccCcCHH-HHHHHHHHhcccccccceEEEECCccceEEEee
Confidence            47889999999999999999999999  5999999999997 99999997764   567777323 346999985

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.60  E-value=0.27  Score=47.22  Aligned_cols=50  Identities=16%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+++++|+  .+.++++.++++. ++.+.+.+++++.+||.+++ +..+|+|.
T Consensus        88 ~VKv~~iMi--~~pvtv~~d~tv~-eA~~~m~~~~~s~l~VVD~~-gklvGIVT  137 (479)
T PRK07807         88 WVKSRDLVF--DTPVTLSPDDTVG-DALALLPKRAHGAVVVVDEE-GRPVGVVT  137 (479)
T ss_pred             hcccccccc--cCCeEECCCCCHH-HHHHHHHhcCCceEEEECCC-CeEEEEEe
Confidence            556789996  4678899999997 99999999999999999753 57999986

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=91.57  E-value=0.35  Score=35.83  Aligned_cols=39  Identities=15%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcC-CceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKG-HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~-~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...++.+.++. ++++.+.+++ ++.+||.++  ++++|+++
T Consensus         2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~--~~~~G~v~   41 (115)
T cd04620           2 HPLTVTPDTPVA-DAIALMSQQGDSSCVLVVEK--GRLLGIFT   41 (115)
T ss_pred             CCeEeCCCCcHH-HHHHHHHhcCCCceEEEcCC--CcEEEEEe
Confidence            346788999997 8999998888 777888874  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=91.09  E-value=0.52  Score=34.83  Aligned_cols=40  Identities=15%  Similarity=0.168  Sum_probs=33.6

Q ss_pred             EEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          216 TFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       216 v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.++.++++. ++.+.+.+.++..+||.+++ ++++|+++.
T Consensus         4 ~~~v~~~~~~~-~~~~~~~~~~~~~~~v~d~~-~~~~G~v~~   43 (113)
T cd04607           4 QLLVSPDASIL-DALRKIDKNALRIVLVVDEN-GRLLGTVTD   43 (113)
T ss_pred             ceEECCCCCHH-HHHHHHHhcCcCEEEEECCC-CCEEEEEEc
Confidence            45688999997 99999998999999999764 679999873

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=90.52  E-value=0.64  Score=34.82  Aligned_cols=40  Identities=10%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+++.++++. ++.+.+.+++.+.+||.+++ ++.+|++.
T Consensus         2 ~~~~~~~~~~~~-~a~~~~~~~~~~~~~V~d~~-~~~~Givt   41 (118)
T cd04617           2 PPVVVRENTSVY-DAIVTLFLEDVGSLFVVDED-GDLVGVVS   41 (118)
T ss_pred             CCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEEEE
Confidence            457889999997 89999999999999999763 67999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=90.41  E-value=0.34  Score=46.83  Aligned_cols=60  Identities=15%  Similarity=0.294  Sum_probs=43.6

Q ss_pred             HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025093          189 HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       189 ~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~  256 (258)
                      +++.+++..+-++...   .++.|    ..++.++++. ++++.+.+++++.+||.+++  .+.++|++.
T Consensus        87 e~qa~lV~kVk~~~~g---~i~~~----~tV~pd~tl~-eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT  148 (502)
T PRK07107         87 ESEAAMVRRVKNYKAG---FVVSD----SNLTPDNTLA-DVLDLKEKTGHSTVAVTEDGTAHGKLLGIVT  148 (502)
T ss_pred             HHHHHHHHHHHHHhcC---CcCCC----CEeCCCCcHH-HHHHHHHhcCCCeEEEEeCCCcCCEEEEEEE
Confidence            5566665555443321   22223    5899999997 99999999999999999863  468999985

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=89.75  E-value=0.47  Score=34.88  Aligned_cols=36  Identities=14%  Similarity=0.249  Sum_probs=28.8

Q ss_pred             EeCCCCccHHHHHHHHHcCC-----ceeeeeeCCCCcEEEEEE
Q 025093          219 IDINAKLDKELMNLILEKGH-----SRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       219 l~~~~~~~~e~~~~~~~~~~-----SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.++++. ++++.+.++++     ..+||.+++ ++.+|++.
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vvd~~-~~~~G~v~   42 (109)
T cd04606           2 VREDWTVG-EALEYLRRNADDPETIYYIYVVDEE-GRLLGVVS   42 (109)
T ss_pred             ccccCcHH-HHHHHHHhccCcccceeEEEEECCC-CCEEEEEE
Confidence            56788886 89999988884     678888654 78999986

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=89.32  E-value=0.2  Score=38.41  Aligned_cols=51  Identities=18%  Similarity=0.200  Sum_probs=38.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHH---------HHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLI---------LEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~---------~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+|.|+|++  +..+++.+++++ ++.+.+         .++...++||.++ .++++|++.
T Consensus        57 ~~~~v~~im~~--~~~~v~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt  116 (124)
T cd04608          57 PSDPVSKALYK--QFKRVNKNDTLG-KLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVT  116 (124)
T ss_pred             CCCcHHHHhhc--cceecCCCCCHH-HHHhhcccCCceEEEecccccccccccc-ccceEEEEe
Confidence            45789999975  677899999996 777744         2335667777764 379999986

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=88.98  E-value=0.96  Score=33.17  Aligned_cols=39  Identities=15%  Similarity=0.301  Sum_probs=32.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++..++.++++. ++.+.+.+.+++++||-++  ++++|++.
T Consensus         2 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~v~~~--~~~~G~v~   40 (112)
T cd04625           2 TIYTVAPETLLS-EAVATMAEQDLGSLVVMER--GELVGLLT   40 (112)
T ss_pred             CcEEECCCCcHH-HHHHHHHHcCCCeEEEeeC--CEEEEEEE
Confidence            677899999997 8999998888888887753  78999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0517 FOG: CBS domain [General function prediction only]

Probab=88.55  E-value=1.1  Score=33.01  Aligned_cols=44  Identities=27%  Similarity=0.512  Sum_probs=37.5

Q ss_pred             ccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       208 eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++|.  .+..++..+.++. ++.+.+.+++++++||.+++  ..+|++.
T Consensus         3 ~~~~--~~~~~v~~~~~~~-~a~~~m~~~~~~~~~v~~~~--~l~Giit   46 (117)
T COG0517           3 DIMT--KDVITVKPDTSVR-DALLLMSENGVSAVPVVDDG--KLVGIIT   46 (117)
T ss_pred             cccc--CCCEEECCCCcHH-HHHHHHHHcCCCEEEEeeCC--EEEEEEE
Confidence            4455  7888999999997 99999999999999999763  7899874

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=88.27  E-value=0.46  Score=44.37  Aligned_cols=52  Identities=17%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI  255 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv  255 (258)
                      +=..+.+.|+|+||.  ++.+.+.+++ +.-+...++.--++||.+++ |+.+-++
T Consensus       167 ~~~~~~~~~vmt~~~--~~~~~gi~l~-~~neiL~~~kkGkl~iv~~~-gelva~~  218 (503)
T KOG2550|consen  167 EDNSLLVSDVMTKNP--VTGAQGITLK-EANEILKKIKKGKLPVVDDK-GELVAML  218 (503)
T ss_pred             hcccchhhhhccccc--ccccccccHH-HHHHHHHhhhcCCcceeccC-Cceeeee
Confidence            446688999999999  7788889997 88999999999999999764 7777665

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=88.13  E-value=0.66  Score=41.65  Aligned_cols=48  Identities=10%  Similarity=0.146  Sum_probs=40.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++++|.|   .+.++.++++. ++++.+++.+....||.++. +.++|+|.
T Consensus       133 ~~l~~l~r~---~~~V~e~~~l~-~~L~~m~~~~~~~a~VvDe~-G~viGiVT  180 (292)
T PRK15094        133 FSMDKVLRQ---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDEF-GGVSGLVT  180 (292)
T ss_pred             CCHHHHcCC---CcCcCCCCcHH-HHHHHHHhcCCEEEEEEeCC-CCEEEEeE
Confidence            347888875   34799999997 99999999999999999864 57999986

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=88.05  E-value=0.48  Score=45.16  Aligned_cols=54  Identities=20%  Similarity=0.288  Sum_probs=47.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .-++..++++|.++  ++.++.+++.+ |+.+.+.++...-.||.+++ +..+|++.+
T Consensus       192 a~~~~~i~~im~~~--~~~V~~~~dqe-evA~~~~~ydl~a~PVVd~~-~~LiG~iti  245 (451)
T COG2239         192 AEPDELLKDLMEDD--VVSVLADDDQE-EVARLFEKYDLLAVPVVDED-NRLIGIITI  245 (451)
T ss_pred             CCcHhHHHHHhccc--ceeecccCCHH-HHHHHHHHhCCeecceECCC-CceeeeeeH
Confidence            55678899999987  88899999986 99999999999999999764 789999863

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=85.58  E-value=1.2  Score=42.90  Aligned_cols=49  Identities=18%  Similarity=0.293  Sum_probs=41.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+++++|++  +.++++.++++. ++.+.+.+.+++.+||.++  +..+|+|.
T Consensus        87 ~VKv~eim~~--~pvtv~p~~tI~-eA~~lm~~~~~~~~vVvD~--gklvGIVT  135 (475)
T TIGR01303        87 FVKSRDLVLD--TPITLAPHDTVS-DAMALIHKRAHGAAVVILE--DRPVGLVT  135 (475)
T ss_pred             hcchhhcccc--CCeEECCCCCHH-HHHHHHHhcCCeEEEEEEC--CEEEEEEE
Confidence            5567788875  567899999997 9999999999999999875  57999985

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=85.12  E-value=0.45  Score=46.67  Aligned_cols=47  Identities=21%  Similarity=0.411  Sum_probs=41.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCc
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTN  250 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~  250 (258)
                      .++.+++|+|.+  .+++++.-+.+. .+.+..+.+.|.-+||.|+..++
T Consensus       579 mr~L~a~ev~~~--pvi~l~~~ekV~-~Iv~vLk~t~HngFPVvd~~~~~  625 (762)
T KOG0474|consen  579 MRNLTAGEVMSK--PVICLNRVEKVA-VIVDVLKSTNHNGFPVVDEPPSN  625 (762)
T ss_pred             hhhhhHhhhccC--CeEEEechhhHH-HHHHHHHhcCcCCCccccCCCCc
Confidence            356789999998  999999999997 89999999999999999887654

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=83.25  E-value=2.4  Score=39.87  Aligned_cols=49  Identities=22%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.|   ...++.++++. ++++.+++++....+|.++ -+.++|+|.
T Consensus       254 ~~~l~~~~~~---~~~Vpe~~~l~-~ll~~m~~~~~~~aiVvDE-~G~~~GiVT  302 (408)
T TIGR03520       254 NFDWQSLLRE---PYFVPENKKLD-DLLRDFQEKKNHLAIVVDE-YGGTSGLVT  302 (408)
T ss_pred             CCCHHHHcCC---CeEeCCCCcHH-HHHHHHHhcCceEEEEEcC-CCCEEEEEE
Confidence            3457888875   67899999997 9999999999999999976 367999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=82.69  E-value=1.2  Score=34.08  Aligned_cols=32  Identities=22%  Similarity=0.416  Sum_probs=28.1

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE  247 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~  247 (258)
                      ++.+++.++++. ++.+.+.+.+++++||++++
T Consensus         2 ~~~~v~~~~~l~-~~~~~~~~~~~~~~~V~d~~   33 (132)
T cd04636           2 DVITVKKDDTLR-DVVEILLTGKISGVPVVDNE   33 (132)
T ss_pred             CCeEeCCCCcHH-HHHHHHHHhCCCccceECCC
Confidence            567889999997 99999999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=81.62  E-value=2.3  Score=39.44  Aligned_cols=49  Identities=22%  Similarity=0.492  Sum_probs=41.1

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+.|.  .+..+++.++++. +++..+.+++++ +||.+++ +.++|+|.
T Consensus       301 ~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~v~~~~-~~~~g~i~  349 (363)
T TIGR01186       301 AQGLQDVLI--DDIYTVDAGTLLR-ETVRKVLKAGIK-VPVVDED-QRLVGIVT  349 (363)
T ss_pred             CCchhhhhc--cCCceECCCCcHH-HHHHHHHhCCCC-EEEECCC-CcEEEEEE
Confidence            346888885  4567899999997 999999999999 9999764 78999985

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
3jtf_A	129	The Cbs Domain Pair Structure Of A Magnesium And Co		4e-04

>pdb|3JTF|A Chain A, The Cbs Domain Pair Structure Of A Magnesium And Cobalt Efflux Protein From Bordetella Parapertussis In Complex With Amp Length = 129

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL 256
           E+T +D   P +    +DI+  L  +L+  I+E  HSR PVY ++  NIIG++L
Sbjct: 4   ERTVADIXVPRSRXDLLDISQPL-PQLLATIIETAHSRFPVYEDDRDNIIGILL 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	5e-20
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	2e-19
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	1e-17
3ocm_A	173	Putative membrane protein; structural genomics, PS	3e-17
3oco_A	153	Hemolysin-like protein containing CBS domains; str	5e-16
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	9e-13
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	1e-12
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	2e-12
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	3e-12
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	8e-12

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} Length = 156

 Score = 82.9 bits (206), Expect = 5e-20
 Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
             ++  L+     +A +      D    +   L+ ++    DAM   +    +  N  ++
Sbjct: 5   AEDVLNLLR----QAHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE 60

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             +   +++  HSR PV  E+   ++G++  
Sbjct: 61  -RITAYVIDTAHSRFPVIGEDKDEVLGILHA 90

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} Length = 172

 Score = 81.3 bits (202), Expect = 2e-19
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 167 RAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLD 226
           + +++ ++     E    G + H+E  ++     L E+T S  M P ++   +D+N  LD
Sbjct: 9   QEDIQAMLQ----EGSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD 64

Query: 227 KELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
              +  +++  HSR PV      +++G+I  
Sbjct: 65  -ANLRTVMQSPHSRFPVCRNNVDDMVGIISA 94

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} Length = 148

 Score = 75.9 bits (188), Expect = 1e-17
 Identities = 15/75 (20%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 183 KGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP 242
             G +   E  ++    E  EK   + M P  +   I  +   + +++ ++ E+G +R P
Sbjct: 2   NAGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYP 60

Query: 243 VYYEEPTNIIGLILV 257
           V  +   +I+G + +
Sbjct: 61  VCRKNKDDILGFVHI 75

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} Length = 173

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 180 EAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS 239
                     +E  +++G L L E++    MTP  +   ++I+      +   +    HS
Sbjct: 12  AMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHS 70

Query: 240 RVPVYYEEPTNIIGLILV 257
             PV       ++G+   
Sbjct: 71  FFPVCRGSLDEVVGIGRA 88

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} Length = 153

 Score = 72.1 bits (178), Expect = 5e-16
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYY 245
               ++   +  A E+ +K ASD M        +D++  +  + + L LE+ +SR PV  
Sbjct: 2   NADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTA 60

Query: 246 EEPT-NIIGLILV 257
           +     IIG    
Sbjct: 61  DNDKDKIIGYAYN 73

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} Length = 129

 Score = 62.4 bits (153), Expect = 9e-13
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             E+T +D M P +    +DI+  L  +L+  I+E  HSR PVY ++  NIIG++L 
Sbjct: 2   NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLA 57

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} Length = 130

 Score = 62.1 bits (152), Expect = 1e-12
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
             +   +  MTP    F +D    ++ E ++   +   SR  VY E+  NIIG +  
Sbjct: 3   AQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVHR 58

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} Length = 130

 Score = 62.1 bits (152), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
           + + +D M P  E   IDIN      ++  +    H R+ +Y +   + I ++ V
Sbjct: 1   KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLRV 54

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} Length = 136

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
           +    D M P ++  +I        E +  +++  HSR PV  E   +++G++L 
Sbjct: 2   DLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLA 55

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} Length = 127

 Score = 60.1 bits (147), Expect = 8e-12
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV 257
           ++   D M P ++   +  N  LD E +++I+E  HSR PV  E+  +I G+++ 
Sbjct: 2   DQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMA 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.67
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.59
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.47
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.41
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.22
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.17
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.15
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.98
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.86
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.86
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.83
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.75
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.68
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.68
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.6
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.44
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.37
4esy_A	170	CBS domain containing membrane protein; structural	98.29
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.29
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.26
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.23
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.22
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.18
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.18
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.18
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.14
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.09
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.06
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.02
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.01
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.99
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	97.97
3ddj_A	296	CBS domain-containing protein; structural genomics	97.97
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.97
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.92
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.91
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.9
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.87
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.86
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.78
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.76
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.76
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	97.75
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	97.74
1vr9_A	213	CBS domain protein/ACT domain protein; structural	97.72
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.71
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.71
4fry_A	157	Putative signal-transduction protein with CBS DOM;	97.7
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.7
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.7
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	97.66
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.63
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.6
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	97.6
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.59
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	97.58
1pvm_A	184	Conserved hypothetical protein TA0289; structural	97.56
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	97.55
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	97.55
3fio_A	70	A cystathionine beta-synthase domain protein fused	97.54
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	97.53
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	97.53
1pbj_A	125	Hypothetical protein; structural genomics, domain,	97.52
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.5
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.5
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.47
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	97.46
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	97.46
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	97.44
4esy_A	170	CBS domain containing membrane protein; structural	97.37
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	97.35
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	97.31
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	97.29
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	97.29
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	97.27
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	97.27
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	97.26
3oco_A	153	Hemolysin-like protein containing CBS domains; str	97.2
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	97.19
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	97.18
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	97.11
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	97.11
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	97.07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	97.07
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	97.06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	97.03
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	97.02
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	97.01
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	97.0
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	97.0
3ddj_A	296	CBS domain-containing protein; structural genomics	96.99
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	96.99
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	96.96
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	96.77
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	96.73
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	96.64
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	96.53
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	96.5
1vr9_A	213	CBS domain protein/ACT domain protein; structural	96.47
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	96.44
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	96.36
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	96.26
2oux_A	286	Magnesium transporter; 10001B, structural genomics	96.22
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	96.16
1pvm_A	184	Conserved hypothetical protein TA0289; structural	96.1
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.06
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	96.05
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.94
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.94
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.88
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	95.87
3ocm_A	173	Putative membrane protein; structural genomics, PS	95.83
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	95.79
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	95.32
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	95.06
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	94.92
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	94.78
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	93.8
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	93.39
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	92.07
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	85.26

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.67  E-value=7.5e-17  Score=129.41  Aligned_cols=89  Identities=17%  Similarity=0.312  Sum_probs=82.3

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeee
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PV  243 (258)
                      .+|+|||+.+++.    ++++|.++++|+++++++++|++.+|+|+|+||.++++++.++++. ++++.+.+++|+++||
T Consensus         2 ~~t~~el~~li~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~i~-~a~~~m~~~~~~~~pV   76 (156)
T 3oi8_A            2 NASAEDVLNLLRQ----AHEQEVFDADTLLRLEKVLDFSDLEVRDAMITRSRMNVLKENDSIE-RITAYVIDTAHSRFPV   76 (156)
T ss_dssp             CCCHHHHHHHHHH----HHHTTSSCHHHHHHHHHHHHHTTCBGGGTCEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEE
T ss_pred             CCCHHHHHHHHHh----HHhcCCcCHHHHHHHHHHhccCCCCHhheeeeHHHeEEECCCCCHH-HHHHHHHHCCCCEEEE
Confidence            3799999999984    4456999999999999999999999999999999999999999997 9999999999999999


Q ss_pred             eeCCCCcEEEEEEe
Q 025093          244 YYEEPTNIIGLILV  257 (258)
Q Consensus       244 y~~~~D~IvGiv~~  257 (258)
                      ++++.|+++|+++.
T Consensus        77 vd~~~~~lvGivt~   90 (156)
T 3oi8_A           77 IGEDKDEVLGILHA   90 (156)
T ss_dssp             ESSSTTCEEEEEEG
T ss_pred             EcCCCCcEEEEEEH
Confidence            98876799999973

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.59  E-value=5.1e-16  Score=126.57  Aligned_cols=89  Identities=22%  Similarity=0.480  Sum_probs=48.7

Q ss_pred             ccccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceee
Q 025093          163 ALFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVP  242 (258)
Q Consensus       163 ~~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~P  242 (258)
                      +.+|++||+.+++.    +.++|.++++|+++++++++|++.+|+|+|+|+.++++++.++++. ++++.+.+++++++|
T Consensus         5 ~~~t~~el~~l~~~----~~~~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~p   79 (172)
T 3lhh_A            5 DNVTQEDIQAMLQE----GSSAGVIEHNEHAMVKNVFRLDERTISSLMVPRSDIVFLDLNLPLD-ANLRTVMQSPHSRFP   79 (172)
T ss_dssp             ------------------------------------------CTTTTSEEGGGCCCEETTSCHH-HHHHHHHTCCCSEEE
T ss_pred             ccCCHHHHHHHHHH----HHHcCCCCHHHHHHHHHHhccCCCCHHHhCccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEE
Confidence            46899999999984    4566999999999999999999999999999999999999999997 999999999999999


Q ss_pred             eeeCCCCcEEEEEE
Q 025093          243 VYYEEPTNIIGLIL  256 (258)
Q Consensus       243 Vy~~~~D~IvGiv~  256 (258)
                      |++++.++++|+++
T Consensus        80 Vvd~~~~~lvGivt   93 (172)
T 3lhh_A           80 VCRNNVDDMVGIIS   93 (172)
T ss_dssp             EESSSTTSEEEEEE
T ss_pred             EEeCCCCeEEEEEE
Confidence            99877689999986

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.47  E-value=5e-14  Score=115.29  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=68.1

Q ss_pred             cCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          182 GKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       182 ~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .++|.++++|+++++++++|++.+|+++|+|+.++++++.++++. ++++.+.+++|+++||++++.++++|+++.
T Consensus        14 ~~~g~l~~~e~~~i~~~l~l~~~~v~diM~~~~~v~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~lvGivt~   88 (173)
T 3ocm_A           14 PAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAA-TIRQQLTAAPHSFFPVCRGSLDEVVGIGRA   88 (173)
T ss_dssp             ----CCCHHHHHHHHHHHHHTTSCSTTTSEEGGGCCCEETTSCHH-HHHHHHHHSSCSEEEEESSSTTSEEEEEEH
T ss_pred             HhcCCcCHHHHHHHHHHhccCCCCHHHhCCcHHHeEEEeCCCCHH-HHHHHHHhCCCCEEEEEeCCCCCEEEEEEH
Confidence            345999999999999999999999999999999999999999997 999999999999999998877899999973

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.41  E-value=1.6e-13  Score=108.52  Aligned_cols=72  Identities=21%  Similarity=0.451  Sum_probs=54.6

Q ss_pred             CCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          184 GGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       184 ~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|.++++|++++++++++++.+|+|+|+||+++++++.++++. ++++.+.+++++++||++++.++++|+++
T Consensus         3 ~g~l~~~e~~~i~~~~~l~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~lvGivt   74 (148)
T 3lv9_A            3 AGLIDESEQRLVDNIFEFEEKKIREIMVPRTDMVCIYESDSEE-KILAILKEEGVTRYPVCRKNKDDILGFVH   74 (148)
T ss_dssp             ---------------CGGGTCBGGGTSEETTTCCCEETTCCHH-HHHHHHHHSCCSEEEEESSSTTSEEEEEE
T ss_pred             CCccCHHHHHHHHHHhccCCCCHHHccccHHHeEEECCCCCHH-HHHHHHHHCCCCEEEEEcCCCCcEEEEEE
Confidence            4899999999999999999999999999999999999999997 99999999999999999876689999986

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.22  E-value=7e-12  Score=111.62  Aligned_cols=72  Identities=11%  Similarity=0.232  Sum_probs=66.6

Q ss_pred             CCCCHhHHHHHHhhhcccc-ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          185 GELTHDETTIIAGALELTE-KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       185 g~l~~~E~~mi~~i~~~~~-~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.++++|++|++++++|-+ ++|+|+|+||.++++++.++++. ++++.+.+++|+|+|||+++.|+++|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~v~dim~~~~~vv~v~~~~tv~-~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~   74 (334)
T 2qrd_G            2 MDVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLTM   74 (334)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEECH
T ss_pred             CCCchHHHHHHHHHHHHHhcCchhhhCCCCCCEEEEcCCCCHH-HHHHHHHHcCCeEEEEEeCCCCeEEEEEEH
Confidence            4567899999999999655 99999999999999999999997 999999999999999999988999999974

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.17  E-value=4.1e-12  Score=101.02  Aligned_cols=69  Identities=26%  Similarity=0.436  Sum_probs=60.7

Q ss_pred             CCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeee-eCCCCcEEEEEE
Q 025093          187 LTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY-YEEPTNIIGLIL  256 (258)
Q Consensus       187 l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy-~~~~D~IvGiv~  256 (258)
                      ++++|+++++++++|++.+|+++|+||+++++++.++++. ++++.+.+++++++||+ +++.++++|+++
T Consensus         3 l~~~e~~~i~~~~~l~~~~v~~iM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVv~d~~~~~lvGivt   72 (153)
T 3oco_A            3 ADEEDANFMQRAFEMNDKVASDVMVDRTSMSVVDVDETIA-DALLLYLEEQYSRFPVTADNDKDKIIGYAY   72 (153)
T ss_dssp             -----CCHHHHHHHHHHCBHHHHSEEGGGCCCEETTSBHH-HHHHHHHHHCCSEEEEEETTEEEEEEEEEE
T ss_pred             cCHHHHHHHHHhcccCCCEeeeEecchhheEEEcCCCCHH-HHHHHHHhCCCCEEEEEECCCCCcEEEEEE
Confidence            6778999999999999999999999999999999999997 99999999999999999 655689999986

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.15  E-value=9.3e-12  Score=110.31  Aligned_cols=74  Identities=12%  Similarity=0.278  Sum_probs=69.7

Q ss_pred             CCCCCCHhHHHHHHhhhcc-ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          183 KGGELTHDETTIIAGALEL-TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       183 ~~g~l~~~E~~mi~~i~~~-~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.|.++++|+++++++++| ++++++|+|+||.++++++.++++. ++++.+.+++++++||++++.++++|+++.
T Consensus         8 ~~~~~~~~~~~~~~~i~~~l~~~~~~d~m~~~~~~v~v~~~~sv~-~a~~~m~~~~~~~~pV~d~~~~~lvGilt~   82 (323)
T 3t4n_C            8 SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVK-KSLNVLLQNSIVSAPLWDSKTSRFAGLLTT   82 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHTTCSCEEEEETTTTEEEEEECH
T ss_pred             CCCcccHHHHHHHHHHHHHHHhCchHhhCCCCCcEEEEcCCCcHH-HHHHHHHHcCCceEEEEeCCCCeEEEEEEH
Confidence            4478899999999999999 9999999999999999999999997 999999999999999999888999999863

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.06  E-value=7.9e-11  Score=94.52  Aligned_cols=62  Identities=19%  Similarity=0.218  Sum_probs=55.2

Q ss_pred             HHHHhhh-ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          193 TIIAGAL-ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       193 ~mi~~i~-~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .||.+.| +|-..+++++||||+++++++.++|++ ++++.+.++||||+||+++ .++++|+++
T Consensus         3 ami~~~~e~~l~~~~~~iM~P~~~v~~v~~~~t~~-~a~~~m~~~~~s~~pVvd~-~~~lvGiit   65 (156)
T 3k6e_A            3 AMIAKEFETFLLGQEETFLTPAKNLAVLIDTHNAD-HATLLLSQMTYTRVPVVTD-EKQFVGTIG   65 (156)
T ss_dssp             HHHHHHHHHHHHTTGGGGEEETTSSCCEETTSBHH-HHHHHHTTSSSSEEEEECC--CBEEEEEE
T ss_pred             chHHHHHHHHhhccHHHhCcchhHeEEECCcCCHH-HHHHHHHHcCCcEEEEEcC-CCcEEEEEE
Confidence            3777777 477789999999999999999999997 9999999999999999975 478999986

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.98  E-value=2.1e-10  Score=101.97  Aligned_cols=71  Identities=8%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             CCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          183 KGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       183 ~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++|.+.+.+++.+++.  |++++|+|+|+||.++++++.++++. ++++.+.+++|+++||++++.|+++|+++
T Consensus        16 ~~~~~~~~~~~~~~~~--l~~~~v~dim~p~~~v~~v~~~~~v~-~a~~~~~~~~~~~~pV~d~~~~~~vGivt   86 (330)
T 2v8q_E           16 HSQETPESNSSVYTTF--MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLT   86 (330)
T ss_dssp             -------CCSCHHHHH--HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEE
T ss_pred             HhhhccchhhHHHHHH--HHcCcHhhhccCCCcEEEEeCCCcHH-HHHHHHHHcCCcEEEEEeCCCCeEEEEEE
Confidence            4577888888888888  47899999999999999999999997 99999999999999999998899999997

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=1.3e-09  Score=84.12  Aligned_cols=53  Identities=23%  Similarity=0.434  Sum_probs=49.5

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+|+|+|+|+.++++++.+++++ ++++.+.+++|+++||++++.++++|+++
T Consensus         1 ~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVv~~~~~~lvGivt   53 (130)
T 3hf7_A            1 KVSVNDIMVPRNEIVGIDINDDWK-SIVRQLTHSPHGRIVLYRDSLDDAISMLR   53 (130)
T ss_dssp             CCBHHHHSEEGGGCCEEETTSCHH-HHHHHHHTCSSSEEEEESSSGGGEEEEEE
T ss_pred             CcCHHHhCccHHHEEEEcCCCCHH-HHHHHHHHCCCCeEEEEcCCCCcEEEEEE
Confidence            468999999999999999999997 99999999999999999877789999986

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.86  E-value=1.7e-09  Score=83.21  Aligned_cols=56  Identities=39%  Similarity=0.659  Sum_probs=50.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.
T Consensus         2 ~~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt~   57 (129)
T 3jtf_A            2 NAERTVADIMVPRSRMDLLDISQPLP-QLLATIIETAHSRFPVYEDDRDNIIGILLA   57 (129)
T ss_dssp             --CCBHHHHCEEGGGCCCEETTSCHH-HHHHHHHHSCCSEEEEESSSTTCEEEEEEG
T ss_pred             CCCCCHHHhCccHHHeEEECCCCCHH-HHHHHHHHcCCCEEEEEcCCCCcEEEEEEH
Confidence            46889999999999999999999997 999999999999999998767899999873

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.83  E-value=1.2e-09  Score=84.07  Aligned_cols=56  Identities=27%  Similarity=0.452  Sum_probs=48.5

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++
T Consensus         2 ~l~~~~v~~iM~~~~~v~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~~Givt   57 (130)
T 3i8n_A            2 NAQDVPVTQVMTPRPVVFRVDATMTIN-EFLDKHKDTPFSRPLVYSEQKDNIIGFVH   57 (130)
T ss_dssp             -----CCTTTSCCBCCCCEEETTSBHH-HHHHHTTTCSCSCCEEESSSTTCEEEECC
T ss_pred             CcCcCCHhhCCCcHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEeCCCCcEEEEEE
Confidence            478999999999999999999999997 99999999999999999887789999986

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.81  E-value=2.6e-09  Score=83.04  Aligned_cols=55  Identities=24%  Similarity=0.483  Sum_probs=49.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++.+|+++|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.
T Consensus         1 ~~~~v~~iM~~~~~~~~v~~~~~v~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~   55 (136)
T 3lfr_A            1 ADLQVRDIMVPRSQMISIKATQTPR-EFLPAVIDAAHSRYPVIGESHDDVLGVLLA   55 (136)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEG
T ss_pred             CCCChHhccccHHHEEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEH
Confidence            4689999999999999999999997 999999999999999998866899999873

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.75  E-value=5.6e-09  Score=79.97  Aligned_cols=55  Identities=31%  Similarity=0.600  Sum_probs=49.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++.+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++.++++|+++.
T Consensus         1 ~~~~v~diM~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~~~~~vGivt~   55 (127)
T 3nqr_A            1 ADQRVRDIMIPRSQMITLKRNQTLD-ECLDVIIESAHSRFPVISEDKDHIEGILMA   55 (127)
T ss_dssp             --CBHHHHSEEGGGCCCEETTCCHH-HHHHHHHHHCCSEEEEESSSTTCEEEEEEG
T ss_pred             CCcCHHHhcccHHHeEEEcCCCCHH-HHHHHHHhCCCCEEEEEcCCCCcEEEEEEH
Confidence            4689999999999999999999997 999999999999999998776899999873

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.68  E-value=3.1e-08  Score=93.11  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=74.6

Q ss_pred             cccHHHHHHHHHhhcccccCC---------CCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHH
Q 025093          164 LFRRAELKTLVNLHGNEAGKG---------GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLIL  234 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~---------g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~  234 (258)
                      .+++||+..+++..    .++         +.++++|++++++++++++.+|+++|+|  ++++++.+++++ ++++.++
T Consensus       110 ~l~~dd~~~ll~~l----~~~~~~~~~~ll~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~v~v~~~~tv~-ea~~~~~  182 (473)
T 2zy9_A          110 ELSLDDLADALQAV----RKEDPAYFQRLKDLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLR  182 (473)
T ss_dssp             HSCHHHHHHHHHHH----HHSCHHHHHHHTTSSCHHHHHHHHHHHTSCTTBSTTTCBS--CEEEECTTCBHH-HHHHHHH
T ss_pred             hCCHHHHHHHHHhC----CHhHHHHHHHHHhcCCHHHHHHHHHHhcCCCCCHHHhCCC--CceEeCCCCcHH-HHHHHHH
Confidence            46788888888743    223         6899999999999999999999999997  899999999997 9999999


Q ss_pred             HcC-----CceeeeeeCCCCcEEEEEEe
Q 025093          235 EKG-----HSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       235 ~~~-----~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +++     ++++||++++ ++++|+++.
T Consensus       183 ~~~~~~~~~~~ipVvd~~-~~lvGiVt~  209 (473)
T 2zy9_A          183 RAAPDAETIYYIYVVDEK-GRLKGVLSL  209 (473)
T ss_dssp             HHGGGCSEEEEEEEECTT-SBEEEEEEH
T ss_pred             hccCCcCceeEEEEECCC-CcEEEEEEH
Confidence            974     7999999875 889999973

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.68  E-value=7.9e-08  Score=80.42  Aligned_cols=68  Identities=6%  Similarity=0.054  Sum_probs=61.7

Q ss_pred             CCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHc---CCceeeeeeCCCCcEEEEEEe
Q 025093          186 ELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK---GHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       186 ~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~---~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .++++|++++++++++++.+|+++|+|  ++++++.++++. ++++.+.+.   +++.+||.++ .++++|+++.
T Consensus        36 ~l~~~e~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-eal~~~~~~~~~~~~~~~Vvd~-~~~lvGivt~  106 (205)
T 3kxr_A           36 QMGERQRQRFELYDQYSENEIGRYTDH--QMLVLSDKATVA-QAQRFFRRIELDCNDNLFIVDE-ADKYLGTVRR  106 (205)
T ss_dssp             HSCHHHHHHHHHHHHSCTTCGGGGCBC--CCCEEETTCBHH-HHHHHHHHCCCTTCCEEEEECT-TCBEEEEEEH
T ss_pred             cCCHHHHHHHHHHhCCCcchHHhhccC--ceEEECCCCcHH-HHHHHHHhhCccCeeEEEEEcC-CCeEEEEEEH
Confidence            378899999999999999999999998  799999999997 999999987   7889999975 4889999973

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.60  E-value=4.3e-08  Score=85.57  Aligned_cols=69  Identities=17%  Similarity=0.228  Sum_probs=62.8

Q ss_pred             CCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHc-----CCceeeeeeCCCCcEEEEEEe
Q 025093          185 GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK-----GHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       185 g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~-----~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      |.++.++++++.+++++.+.+|+++|+|  ++++++.+++++ ++++.+.++     +++++||++++ ++++|+++.
T Consensus       116 ~~l~~~~~~~i~~~l~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~~Vvd~~-~~lvGivt~  189 (278)
T 2yvy_A          116 DLLDPRTRAEVEALARYEEDEAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLSL  189 (278)
T ss_dssp             HHSCHHHHHHHHHHHHSCTTBGGGTCBS--CCCEECTTSBHH-HHHHHHHHHTTTCSCSSEEEEECTT-CBEEEEEEH
T ss_pred             HcCCHHHHHHHHHHHCCCcchHHhhcCC--CceEECCCCcHH-HHHHHHHHccCCccceeEEEEECCC-CCEEEEEEH
Confidence            4688899999999999999999999998  899999999997 999999998     68999999865 889999974

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.37  E-value=2.4e-07  Score=72.97  Aligned_cols=61  Identities=20%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             HHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          194 IIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       194 mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |.++...+.+.+|+++|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         1 ~~~~~~~l~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~pVvd~~-~~~~Givt   61 (157)
T 2emq_A            1 MTWEHNEFMQMTVKPFLIPADKVAHVQPGNYLD-HALLVLTKTGYSAIPVLDTS-YKLHGLIS   61 (157)
T ss_dssp             ---------CCBSTTTCEEGGGSCCBCTTSBHH-HHHHHHHHSSSSEEEEECTT-CCEEEEEE
T ss_pred             CchhHhhHhhCcHHhhccCCccceEECCCCcHH-HHHHHHHHCCceEEEEEcCC-CCEEEEee
Confidence            345667789999999999999999999999997 99999999999999999863 78999986

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.29  E-value=8.9e-07  Score=71.10  Aligned_cols=61  Identities=21%  Similarity=0.347  Sum_probs=52.3

Q ss_pred             hHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       190 ~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++.+.+.+  ++.+|+|+|++  ++++++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus         6 ~~~~~~~~~l--~~~~V~diM~~--~v~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit   66 (170)
T 4esy_A            6 ARRRAIARAI--RQVPIRDILTS--PVVTVREDDTLD-AVAKTMLEHQIGCAPVVDQN-GHLVGIIT   66 (170)
T ss_dssp             HHHHHHHHHH--HTSBGGGGCCS--CCCCEETTSBHH-HHHHHHHHTTCSEEEEECTT-SCEEEEEE
T ss_pred             HHHHHHHHHH--cCCCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCeEEEEEcCC-ccEEEEEE
Confidence            4455666654  68999999986  789999999997 99999999999999999764 78999985

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.29  E-value=4.3e-07  Score=71.20  Aligned_cols=51  Identities=22%  Similarity=0.270  Sum_probs=47.4

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|+|+|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt   78 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLR-DALLEITRKNLGMTAICDDD-MNIIGIFT   78 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHH-HHHHHHHHHTSSEEEEECTT-CBEEEEEE
T ss_pred             cCHHHHhcCCCCCeEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CcEEEEec
Confidence            59999999999999999999997 99999999999999999754 78999986

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.26  E-value=4.1e-07  Score=86.00  Aligned_cols=81  Identities=16%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             ccccHHHHHHHHHhhcccccCCCCC-----CHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          163 ALFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       163 ~~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                      ..+|++|+...+...    +.-|.|     .+++.++++++     ++++++|+  .++++++.+++++ ++++.+.+++
T Consensus        52 dtVTe~~ma~a~a~~----GGiGvI~~n~s~e~qa~~V~~V-----k~~~~~m~--~d~v~v~~~~tv~-ea~~~m~~~~  119 (496)
T 4fxs_A           52 DTVTEARLAIALAQE----GGIGFIHKNMSIEQQAAQVHQV-----KIFEAGVV--THPVTVRPEQTIA-DVMELTHYHG  119 (496)
T ss_dssp             TTTCSHHHHHHHHHH----TCEEEECSSSCHHHHHHHHHHH-----HHCCC--C--BCCCCBCSSSBHH-HHHHHHTSSC
T ss_pred             chhhHHHHHHHHHHc----CCcceecCCCCHHHHHHHHHhc-----cccccccc--cCceEECCCCCHH-HHHHHHHHcC
Confidence            357899999888642    223555     67889999998     57789999  5889999999997 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEE
Q 025093          238 HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       238 ~SR~PVy~~~~D~IvGiv~  256 (258)
                      ||++||++++ |+++|+|+
T Consensus       120 ~s~~PVvd~~-~~lvGiVt  137 (496)
T 4fxs_A          120 FAGFPVVTEN-NELVGIIT  137 (496)
T ss_dssp             CCEEEEECSS-SBEEEEEE
T ss_pred             CcEEEEEccC-CEEEEEEE
Confidence            9999999875 89999986

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.23  E-value=3.7e-07  Score=71.37  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=51.5

Q ss_pred             hhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          198 ALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       198 i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .-.|.+.+|+++|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~pVvd~~-~~~~Givt   65 (150)
T 3lqn_A            9 KDEFQQIFVKDLMISSEKVAHVQIGNGLE-HALLVLVKSGYSAIPVLDPM-YKLHGLIS   65 (150)
T ss_dssp             HHHHHHCBHHHHSEEGGGSCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             HHhhhcCChhhcccCCCceEEECCCCcHH-HHHHHHHHcCCcEEEEECCC-CCEEEEEE
Confidence            34578899999999999999999999997 99999999999999999764 78999986

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.22  E-value=8.9e-07  Score=70.04  Aligned_cols=55  Identities=20%  Similarity=0.324  Sum_probs=50.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+.+|+++|+|+.++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt   64 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIG   64 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEE
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHH-HHHHHHHhCCCcEEEEECCC-CCEEEEeE
Confidence            678899999999999999999999997 99999999999999999764 58999986

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.18  E-value=1.5e-06  Score=67.59  Aligned_cols=53  Identities=23%  Similarity=0.364  Sum_probs=48.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+|+|+|+|+.++++++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt   55 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVD-EALELLVENRITGFPVIDED-WKLVGLVS   55 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHH-HHHHHHHHTTCSEEEEECTT-CBEEEEEE
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHH-HHHHHHHHcCCceEEEEeCC-CeEEEEEE
Confidence            4578999999999999999999997 99999999999999999864 78999986

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.18  E-value=1e-06  Score=74.87  Aligned_cols=53  Identities=19%  Similarity=0.241  Sum_probs=48.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.+|+|+|+| .++.+++.+++++ ++++.+.+++++++||++++ ++++|+++.
T Consensus       183 ~~~~v~~im~~-~~~~~~~~~~~~~-~~~~~m~~~~~~~~pVvd~~-~~~~Giit~  235 (245)
T 3l2b_A          183 QSLPVDYVMTK-DNLVAVSTDDLVE-DVKVTMSETRYSNYPVIDEN-NKVVGSIAR  235 (245)
T ss_dssp             GGSBHHHHSBC-TTCCCEETTSBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEEC
T ss_pred             cCCceeeEecC-CccEEECCCCcHH-HHHHHHHhcCCceEEEEcCC-CeEEEEEEH
Confidence            46789999999 8899999999997 99999999999999999765 889999974

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.18  E-value=3.2e-06  Score=74.03  Aligned_cols=69  Identities=25%  Similarity=0.289  Sum_probs=62.3

Q ss_pred             CCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHc-----CCceeeeeeCCCCcEEEEEEe
Q 025093          185 GELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEK-----GHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       185 g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~-----~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +.++.+|+..+.+++.+.+.+|+++|+|  ++++++.++++. ++++.+.++     +++++||++++ ++++|+|+.
T Consensus       118 ~~l~~~e~~~i~~ll~~~~~~v~~iM~~--~~~~v~~~~tv~-ea~~~~~~~~~~~~~~~~~pVvd~~-~~lvGivt~  191 (286)
T 2oux_A          118 SLLSSEEAGEIKELLHYEDETAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVISL  191 (286)
T ss_dssp             HTSCHHHHHHHHHHTTSCTTBHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEEH
T ss_pred             HcCCHHHHHHHHHHhcCChHHHHHhCCC--CceEECCCCcHH-HHHHHHHHcccCccceeEEEEEcCC-CeEEEEEEH
Confidence            3578889999999999999999999997  789999999997 999999998     89999999864 789999973

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.14  E-value=1.8e-06  Score=81.21  Aligned_cols=81  Identities=14%  Similarity=0.221  Sum_probs=67.1

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~  238 (258)
                      .+|++|+...+...    +..|.+.     +++++++++++++     +++|+|  ++++++.+++++ ++++.+.++++
T Consensus        54 ~vt~~eLa~av~~~----Gg~G~i~~~~~~e~~~~~i~~v~~~-----~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~  121 (491)
T 1zfj_A           54 TVTGSKMAIAIARA----GGLGVIHKNMSITEQAEEVRKVKRS-----ENGVII--DPFFLTPEHKVS-EAEELMQRYRI  121 (491)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECCSSCHHHHHHHHHHHHHH-----TTTTSS--SCCCBCSSSBHH-HHHHHHHHTTC
T ss_pred             hccHHHHHHHHHHc----CCceEEeCCCCHHHHHHHHHHHhhH-----HhcCcC--CCeEECCCCcHH-HHHHHHHHcCC
Confidence            46889999988743    2234555     7889999998865     679997  888999999997 99999999999


Q ss_pred             ceeeeeeC-CCCcEEEEEE
Q 025093          239 SRVPVYYE-EPTNIIGLIL  256 (258)
Q Consensus       239 SR~PVy~~-~~D~IvGiv~  256 (258)
                      +++||+++ +.|+++|+|+
T Consensus       122 ~~~pVvd~~~~~~lvGivt  140 (491)
T 1zfj_A          122 SGVPIVETLANRKLVGIIT  140 (491)
T ss_dssp             SEEEEESCTTTCBEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEEE
Confidence            99999983 4589999986

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.09  E-value=9.8e-07  Score=75.65  Aligned_cols=82  Identities=17%  Similarity=0.273  Sum_probs=61.8

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeee
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PV  243 (258)
                      .+|.+|+...+..    +...+.++.   ....++++..+.+|+++|+|  ++.+++.++++. ++++.+.+++++++||
T Consensus        51 ivt~~di~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~V  120 (280)
T 3kh5_A           51 IITSMDIVDFMGG----GSKYNLIRE---KHERNFLAAINEPVREIMEE--NVITLKENADID-EAIETFLTKNVGGAPI  120 (280)
T ss_dssp             EEEHHHHHHHTTT----SGGGHHHHT---TSTTCHHHHTTSBGGGTSBC--SCCCEETTCBHH-HHHHHHHHTTCSEEEE
T ss_pred             EEEHHHHHHHhcc----cchhhhhhh---ccccchhHHhhhhHHHhcCC--CCEEECCCCCHH-HHHHHHHhCCCCEEEE
Confidence            5789999887642    111121111   11344555668999999997  788999999997 9999999999999999


Q ss_pred             eeCCCCcEEEEEE
Q 025093          244 YYEEPTNIIGLIL  256 (258)
Q Consensus       244 y~~~~D~IvGiv~  256 (258)
                      ++++ ++++|+++
T Consensus       121 vd~~-~~~~Givt  132 (280)
T 3kh5_A          121 VNDE-NQLISLIT  132 (280)
T ss_dssp             ECTT-CBEEEEEE
T ss_pred             EcCC-CEEEEEEE
Confidence            9764 88999986

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.06  E-value=8.6e-07  Score=86.14  Aligned_cols=53  Identities=19%  Similarity=0.205  Sum_probs=49.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHH-HcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLIL-EKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~-~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+|+|+|+||+++.+++.|++++ |+.+.+. +++|+++||+|+ .|+++|+++
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~-e~~~~~~~~~~~~~~PVvd~-~~~lvGiVt  504 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQ-HIKGILEKFPNRLVFPVIDA-NGYLLGAIS  504 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHH-HHHHHHHHSTTCCEECBBCT-TCBBCCEES
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHH-HHHHHHHhcCCcceEEEEec-CCeEEEEEE
Confidence            7889999999999999999999997 9999999 799999999987 478999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.02  E-value=4.6e-06  Score=65.75  Aligned_cols=60  Identities=12%  Similarity=0.268  Sum_probs=48.3

Q ss_pred             HHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeC-CCCcEEEEEE
Q 025093          194 IIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYE-EPTNIIGLIL  256 (258)
Q Consensus       194 mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IvGiv~  256 (258)
                      +..+.+++.+.+|+|+|+|  ++.+++.++++. ++++.+.+++++++||+++ +.++++|++.
T Consensus         3 l~~~~~~~~~~~v~dim~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~pVvd~~~~~~~~Givt   63 (164)
T 2pfi_A            3 ILGRNIGSHHVRVEHFMNH--SITTLAKDTPLE-EVVKVVTSTDVTEYPLVESTESQILVGIVQ   63 (164)
T ss_dssp             -------CCSCBHHHHCBC--CCCCEETTCBHH-HHHHHHHTCCCSEEEEESCTTTCBEEEEEE
T ss_pred             CccccccccCCCHHHHcCC--CCeEECCCCcHH-HHHHHHHhCCCCceeEEecCCCCEEEEEEE
Confidence            3445667889999999997  788899999997 9999999999999999986 3578999986

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.01  E-value=3.1e-06  Score=64.80  Aligned_cols=49  Identities=12%  Similarity=0.167  Sum_probs=45.6

Q ss_pred             ccccccccc-ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR-~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|+|+|+|| .++.+++.++++. ++++.+.+++++++||++  .++++|++.
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~Givt   56 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMK--DEKLVGILT   56 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEE
T ss_pred             eHHHHHhcCCCCcEEECCCCcHH-HHHHHHHhcCCCEEEEEE--CCEEEEEEe
Confidence            899999998 8999999999997 999999999999999997  378999986

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.99  E-value=4.3e-06  Score=66.59  Aligned_cols=58  Identities=9%  Similarity=0.093  Sum_probs=52.2

Q ss_pred             hhhcccccccccccccc-ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          197 GALELTEKTASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       197 ~i~~~~~~~v~eiM~PR-~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +...+...+|+|+|+|+ .++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        17 ~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt   75 (165)
T 3fhm_A           17 LYFQGMATFVKDLLDRKGRDVVTVGPDVSIG-EAAGTLHAHKIGAVVVTDAD-GVVLGIFT   75 (165)
T ss_dssp             CCCSSSSCBHHHHHHHHCSCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             hhHhhhhcCHHHHhccCCCCCeEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEE
Confidence            55678889999999997 7899999999997 99999999999999999854 78999986

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=97.97  E-value=9.1e-06  Score=62.31  Aligned_cols=54  Identities=15%  Similarity=0.232  Sum_probs=48.0

Q ss_pred             hccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       199 ~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.|++.+|+++|++  ++.+++.++++. ++++.+.+++++.+||++++ ++++|++.
T Consensus         2 ~~l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt   55 (138)
T 2yzi_A            2 VMDMKAPIKVYMTK--KLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFT   55 (138)
T ss_dssp             -CCTTSBGGGTCBC--CCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             cchhhhhHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEe
Confidence            46889999999984  788999999997 99999999999999999853 78999986

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=97.97  E-value=3.7e-06  Score=73.05  Aligned_cols=78  Identities=15%  Similarity=0.251  Sum_probs=62.1

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeee
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PV  243 (258)
                      .+|.+||...+..    +.+       ..+...+.+++.+.+|+++|+|  ++++++.++++. ++++.+.+++++++||
T Consensus        64 ivT~~Di~~~~~~----~~~-------~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lpV  129 (296)
T 3ddj_A           64 LLTTRDLLSTVES----YCK-------DSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPV  129 (296)
T ss_dssp             EEEHHHHHGGGTT----CC----------CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEE
T ss_pred             EEeHHHHHHHhcc----ccc-------ccccchhhHHHhcccHHHhccC--CCEEEcCCCCHH-HHHHHHHHcCCCEEEE
Confidence            5688888876641    110       1345667778889999999997  678999999997 9999999999999999


Q ss_pred             eeCCCCcEEEEEE
Q 025093          244 YYEEPTNIIGLIL  256 (258)
Q Consensus       244 y~~~~D~IvGiv~  256 (258)
                      ++++ ++++|+++
T Consensus       130 vd~~-~~lvGivt  141 (296)
T 3ddj_A          130 VDIN-DKPVGIVT  141 (296)
T ss_dssp             ECTT-SCEEEEEE
T ss_pred             EcCC-CcEEEEEe
Confidence            9754 78999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.97  E-value=3.8e-06  Score=67.68  Aligned_cols=54  Identities=22%  Similarity=0.410  Sum_probs=47.9

Q ss_pred             ccccccccccccce--EEEE--eCCCCccHHHHHHHHHcCCceeeeee-CCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAE--TFAI--DINAKLDKELMNLILEKGHSRVPVYY-EEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~--v~~l--~~~~~~~~e~~~~~~~~~~SR~PVy~-~~~D~IvGiv~  256 (258)
                      ++.+|+|+|+|+.+  +.++  +.++++. ++++.+.+++++++||++ ++.++++|++.
T Consensus         9 ~~~~v~dim~~~~~~~~~~v~~~~~~~~~-~a~~~~~~~~~~~~pVv~~d~~~~lvGiit   67 (185)
T 2j9l_A            9 HKTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVL   67 (185)
T ss_dssp             CCCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEE
T ss_pred             ccCcHHHHhcccccCceEEEecCCCccHH-HHHHHHHhcCCCceeEEEECCCCeEEEEEE
Confidence            67899999999866  7778  9999997 999999999999999995 45578999986

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.92  E-value=1.2e-05  Score=63.51  Aligned_cols=56  Identities=20%  Similarity=0.260  Sum_probs=50.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCC--cEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPT--NIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D--~IvGiv~  256 (258)
                      ...+.+++++|+|+.++.+++.++++. ++++.+.+++++++||.+++.+  +++|++.
T Consensus        77 ~~~~~~v~~~m~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit  134 (159)
T 3fv6_A           77 ELTSVPVHIIMTRMPNITVCRREDYVM-DIAKHLIEKQIDALPVIKDTDKGFEVIGRVT  134 (159)
T ss_dssp             CTTTCBGGGTSEETTSCCCBCTTSBHH-HHHHHHHHHTCSEEEEEEECSSSEEEEEEEE
T ss_pred             cccCcCHHHHHcCCCCcEEECCCCCHH-HHHHHHHHcCCcEEEEEeCCCcceeEEEEEE
Confidence            457789999999988999999999997 9999999999999999987533  8999986

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.91  E-value=1.4e-05  Score=60.82  Aligned_cols=51  Identities=22%  Similarity=0.376  Sum_probs=46.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.+|+++|+|  ++.+++.++++. ++++.+.+++++++||++  .++++|++.
T Consensus         1 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~Givt   51 (133)
T 2ef7_A            1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVD--GNKPVGIIT   51 (133)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEE
T ss_pred             CCcccHHHhccC--CCEEECCCCcHH-HHHHHHHhcCCCEEEEEE--CCEEEEEEc
Confidence            468899999998  588899999997 999999999999999998  378999986

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.90  E-value=2.9e-06  Score=79.93  Aligned_cols=80  Identities=14%  Similarity=0.246  Sum_probs=24.7

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~  238 (258)
                      .+|++|+...+...    +..|.+.     +++++++++++++++     +|+  .++++++.+++++ ++++.+.+++|
T Consensus        57 ~vt~~ela~ava~~----GglG~i~~~~~~e~~~~~I~~v~~~~~-----~m~--~~~~~v~~~~tv~-ea~~~~~~~~~  124 (486)
T 2cu0_A           57 TVTEWEMAVAMARE----GGLGVIHRNMGIEEQVEQVKRVKRAER-----LIV--EDVITIAPDETVD-FALFLMEKHGI  124 (486)
T ss_dssp             TTCSHHHHHHHHHT----TCEEEECSSSCHHHHHHHHHHHHTCC------------------------------------
T ss_pred             eecHHHHHHHHHhc----CCceeecCCCCHHHHHHHHHhhcchhh-----ccc--cCceEECCCCCHH-HHHHHHHHcCC
Confidence            46788998888632    2224453     678999999998755     687  5899999999997 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEEe
Q 025093          239 SRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       239 SR~PVy~~~~D~IvGiv~~  257 (258)
                      +++||+++  |+++|+|+.
T Consensus       125 ~~~pVvd~--~~lvGivt~  141 (486)
T 2cu0_A          125 DGLPVVED--EKVVGIITK  141 (486)
T ss_dssp             -------------------
T ss_pred             cEEEEEEC--CEEEEEEEH
Confidence            99999987  999999874

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.87  E-value=1.6e-05  Score=60.88  Aligned_cols=52  Identities=23%  Similarity=0.356  Sum_probs=46.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |.+.+|+++|+|  ++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt   56 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVV-EAFEKMLKYKISSLPVIDDE-NKVIGIVT   56 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHH-HHHHHHHHHTCCEEEEECTT-CBEEEEEE
T ss_pred             cccCCHHHhhcC--CceEECCCCcHH-HHHHHHHHCCCcEEEEECCC-CeEEEEEE
Confidence            568899999986  788899999997 99999999999999999864 78999986

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.86  E-value=1.5e-05  Score=61.47  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=44.7

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC-CCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D~IvGiv~  256 (258)
                      .+|+|+|+|  ++.+++.++++. ++++.+.+++++++||++++ .|+++|+++
T Consensus         5 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt   55 (141)
T 2rih_A            5 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVS   55 (141)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEE
T ss_pred             eEHHHHhcC--CCeEeCCCCcHH-HHHHHHHHcCCCEEEEEcCCCcceeEEEEE
Confidence            689999996  788999999997 99999999999999999875 348999986

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.78  E-value=5.8e-06  Score=78.21  Aligned_cols=81  Identities=9%  Similarity=0.153  Sum_probs=21.9

Q ss_pred             cccHHHHHHHHHhhcccccCCCCC-----CHhHHHHHHhhhcccccccccc-ccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGEL-----THDETTIIAGALELTEKTASDA-MTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l-----~~~E~~mi~~i~~~~~~~v~ei-M~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                      .+|++++...+...+    ..|.+     .+++.+++.++..      .|+ |+|  ++++++.++++. ++++.+.+++
T Consensus        61 ~vt~~~la~~la~~g----g~G~I~~~~~~e~~~~~v~~V~~------~e~gM~~--~~~~v~~~~tv~-eal~~m~~~~  127 (503)
T 1me8_A           61 SVSGEKMAIALAREG----GISFIFGSQSIESQAAMVHAVKN------FKAGFVV--SDSNVKPDQTFA-DVLAISQRTT  127 (503)
T ss_dssp             TTCSHHHHHHHHHTT----CEEEECCSSCHHHHHHHHHHHHT------TTC-----------------------------
T ss_pred             hhhHHHHHHHHHhCC----CcceeeCCCCHHHHHHHHhhhhh------cccCccc--CCeEECCCCcHH-HHHHHHHHcC
Confidence            467899988876321    11222     2577888877664      356 998  899999999997 9999999999


Q ss_pred             CceeeeeeCC--CCcEEEEEEe
Q 025093          238 HSRVPVYYEE--PTNIIGLILV  257 (258)
Q Consensus       238 ~SR~PVy~~~--~D~IvGiv~~  257 (258)
                      ||++||++++  .|+++|+|+.
T Consensus       128 ~s~~pVvd~~~~~g~lvGiVt~  149 (503)
T 1me8_A          128 HNTVAVTDDGTPHGVLLGLVTQ  149 (503)
T ss_dssp             ----------------------
T ss_pred             ceEEEEEECCCcCCeEEEEEEH
Confidence            9999999876  4899999863

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.76  E-value=3e-05  Score=58.10  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=47.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+.+++++|.|  ++.+++.++++. ++++.+.+++++++||.++  ++++|++.
T Consensus        61 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~--~~~~Gvit  112 (125)
T 1pbj_A           61 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVIS  112 (125)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             cccccCHHHHcCC--CCeEECCCCCHH-HHHHHHHhcCCcEEEEEEC--CEEEEEEE
Confidence            4568899999997  678899999997 9999999999999999987  89999986

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.76  E-value=1.6e-05  Score=62.39  Aligned_cols=50  Identities=18%  Similarity=0.300  Sum_probs=45.6

Q ss_pred             cccccccccc----ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPI----AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR----~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++|+|+|+|+    .++.+++.++++. ++++.+.+++++++||.+  .++++|++.
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~~~~~V~~--~~~~~Givt   60 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVY-DAIKLMAEKGIGALLVVD--GDDIAGIVT   60 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHH-HHHHHHHHHTCSEEEEES--SSSEEEEEE
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHH-HHHHHHHHcCCCEEEEee--CCEEEEEEE
Confidence            6899999998    8999999999997 999999999999999953  578999986

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=97.75  E-value=3.8e-05  Score=58.58  Aligned_cols=52  Identities=25%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.+++++|.|  +..+++.++++. ++++.+.+++++++||.+ + ++++|++.
T Consensus        70 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd-~-g~~~Giit  121 (135)
T 2rc3_A           70 PVKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLD-D-GKVIGLLS  121 (135)
T ss_dssp             CGGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEE-T-TEEEEEEE
T ss_pred             CcccCCHHHhccC--CCeEECCCCcHH-HHHHHHHHhCCCEEEEEe-C-CEEEEEEE
Confidence            3568899999997  678899999997 999999999999999998 3 78999986

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=97.74  E-value=3.6e-05  Score=60.75  Aligned_cols=51  Identities=12%  Similarity=0.160  Sum_probs=45.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.+|+|+|++  . ++++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Givt   64 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVY-DAICTMFLEDVGTLFVVDRD-AVLVGVLS   64 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CcEEEEEe
Confidence            467899999996  3 4899999997 99999999999999999854 78999986

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.72  E-value=8e-06  Score=68.22  Aligned_cols=84  Identities=14%  Similarity=0.173  Sum_probs=59.5

Q ss_pred             ccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccc-------cccccccccceEEEEeCCCCccHHHHHHHHHcC
Q 025093          165 FRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEK-------TASDAMTPIAETFAIDINAKLDKELMNLILEKG  237 (258)
Q Consensus       165 ~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~-------~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~  237 (258)
                      .|-+|...++..++    .++..--++...+.+++..+|.       +|+++|+|  ++.+++.++++. ++.+.+.+++
T Consensus        30 ~tv~ea~~~m~~~~----~~~~pVvd~~~~l~Givt~~dl~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~  102 (213)
T 1vr9_A           30 ATVRECLHRMRQYQ----TNECIVKDREGHFRGVVNKEDLLDLDLDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQ  102 (213)
T ss_dssp             CBHHHHHHHHHHTT----SSEEEEECTTSBEEEEEEGGGGTTSCTTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCC
T ss_pred             CcHHHHHHHHHHCC----CCEEEEEcCCCEEEEEEEHHHHHhhcCCCcHHHHccC--CCEEECCCCcHH-HHHHHHHHhC
Confidence            45677777776321    1121111112234555555554       69999998  678899999997 9999999999


Q ss_pred             CceeeeeeCCCCcEEEEEE
Q 025093          238 HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       238 ~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++||.+++ ++++|+++
T Consensus       103 ~~~lpVvd~~-g~lvGiit  120 (213)
T 1vr9_A          103 EPYLPVVDEE-MRLKGAVS  120 (213)
T ss_dssp             CSEEEEECTT-CBEEEEEE
T ss_pred             CCEEEEEcCC-CEEEEEEE
Confidence            9999999864 78999986

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.71  E-value=2.9e-05  Score=73.57  Aligned_cols=81  Identities=14%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~  238 (258)
                      .+|++++...+...+    .-|.+.     +++.+++.++..     .+++|++  +.++++.+++++ ++++.+.+++|
T Consensus        77 tvTe~~lAia~a~~G----giGvIh~~~~~~~q~~~V~~V~~-----~~~~m~~--d~v~l~~~~tv~-ea~~~m~~~~~  144 (511)
T 3usb_A           77 TVTEADMAIAMARQG----GLGIIHKNMSIEQQAEQVDKVKR-----SESGVIS--DPFFLTPEHQVY-DAEHLMGKYRI  144 (511)
T ss_dssp             TTCSHHHHHHHHHHT----CEEEECSSSCHHHHHHHHHHHHT-----SSSCSSS--SCCCBCTTSBHH-HHHHHHHHHCC
T ss_pred             hhcHHHHHHHHHhcC----CceeecccCCHHHHHHHHHHhhc-----ccccccc--CCEEECCCCCHH-HHHHHHHHcCC
Confidence            568999987776321    124343     344555666653     4455554  788999999997 99999999999


Q ss_pred             ceeeeeeCC-CCcEEEEEE
Q 025093          239 SRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       239 SR~PVy~~~-~D~IvGiv~  256 (258)
                      |++||++++ .|+++|+|+
T Consensus       145 s~~pVvd~g~~~~lvGiVt  163 (511)
T 3usb_A          145 SGVPVVNNLDERKLVGIIT  163 (511)
T ss_dssp             SEEEEESCTTTCBEEEEEE
T ss_pred             cEEEEEecCCCCEEEEEEE
Confidence            999999862 489999987

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.71  E-value=3.8e-05  Score=58.19  Aligned_cols=50  Identities=12%  Similarity=0.108  Sum_probs=45.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+|+++|++.  ..+++.++++. ++++.+.+++++++||+++  ++++|++.
T Consensus         3 ~s~~v~~~m~~~--~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~--~~~~Givt   52 (128)
T 3gby_A            3 ASVTFSYLAETD--YPVFTLGGSTA-DAARRLAASGCACAPVLDG--ERYLGMVH   52 (128)
T ss_dssp             TTCBGGGGCBCC--SCCEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             cceEHHHhhcCC--cceECCCCCHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEE
Confidence            467999999864  78899999997 9999999999999999987  89999986

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=97.70  E-value=3.9e-05  Score=60.15  Aligned_cols=51  Identities=25%  Similarity=0.343  Sum_probs=46.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|+|  +..+++.++++. ++++.+.+++++++||.++  ++++|+++
T Consensus        75 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~--g~~~Giit  125 (157)
T 4fry_A           75 SKATRVEEIMTA--KVRYVEPSQSTD-ECMALMTEHRMRHLPVLDG--GKLIGLIS  125 (157)
T ss_dssp             SSSCBHHHHSBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccccCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            468899999997  678899999997 9999999999999999983  89999986

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.70  E-value=3.2e-05  Score=60.85  Aligned_cols=52  Identities=19%  Similarity=0.383  Sum_probs=47.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCce-eeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSR-VPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR-~PVy~~~~D~IvGiv~  256 (258)
                      .+++.+|+++|++  ++.+++.++++. ++++.+.++++++ +||++++  +++|++.
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~-ea~~~m~~~~~~~~~~Vvd~~--~~vGivt   64 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARDN--KLVGMIP   64 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEETT--EEEEEEE
T ss_pred             hhccccHhhcccC--CCceECCCCCHH-HHHHHHHhCCCCccEEEEECC--EEEEEEE
Confidence            4577899999986  789999999997 9999999999999 9999876  9999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.70  E-value=2.2e-05  Score=58.67  Aligned_cols=49  Identities=14%  Similarity=0.350  Sum_probs=43.8

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++|+++|+|  ++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         1 ~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~G~vt   49 (122)
T 3kpb_A            1 TLVKDILSK--PPITAHSNISIM-EAAKILIKHNINHLPIVDEH-GKLVGIIT   49 (122)
T ss_dssp             CBHHHHCCS--CCCCEETTSBHH-HHHHHHHHHTCSCEEEECTT-SBEEEEEC
T ss_pred             CchHHhhCC--CCEEeCCCCcHH-HHHHHHHHcCCCeEEEECCC-CCEEEEEE
Confidence            478999997  688899999997 99999999999999999854 78999985

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=97.66  E-value=4.9e-05  Score=65.47  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=47.5

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~  256 (258)
                      ...+.+|+|+|++  +++++..++++. ++.+++.+++|+++||.+++. +.++|+|.
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~-~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt   63 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSID   63 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEE
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEecCCCCeEEEEEE
Confidence            4567899999986  799999999997 999999999999999998753 56999985

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.63  E-value=4.3e-05  Score=60.45  Aligned_cols=51  Identities=16%  Similarity=0.247  Sum_probs=45.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+|+++|+|  ++.+++.++++. ++++.+.+++++++||++++ +.++|++.
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~lvGivt   53 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVS   53 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEe
Confidence            46789999987  788899999997 99999999999999999854 78999986

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.60  E-value=3e-05  Score=58.93  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=44.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.-++|+++|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         5 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt   56 (133)
T 1y5h_A            5 FTMTTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLT   56 (133)
T ss_dssp             ---CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEE
T ss_pred             hhhcCHHHHhcC--CceEeCCCCCHH-HHHHHHHHhCCCeEEEECCC-CeEEEEEe
Confidence            345799999986  788899999997 99999999999999999754 78999986

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=97.60  E-value=9e-05  Score=55.25  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+++++|.|  +...++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        60 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Givt  110 (122)
T 3kpb_A           60 NKKTIEEIMTR--NVITAHEDEPVD-HVAIKMSKYNISGVPVVDDY-RRVVGIVT  110 (122)
T ss_dssp             TCCBGGGTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             cccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCeEEEECCC-CCEEEEEe
Confidence            34589999987  678899999997 99999999999999999764 78999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.59  E-value=6.3e-05  Score=57.67  Aligned_cols=53  Identities=11%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             ccccccccc---cccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASD---AMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~e---iM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++-++++++   +|+  .++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         4 ~~~~~~v~~~~~~~~--~~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd~~-~~~~Givt   59 (144)
T 2nyc_A            4 HFLKIPIGDLNIITQ--DNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYE   59 (144)
T ss_dssp             GGGGSBGGGSSCCBC--SSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             chhhcchhhcCCCCC--CCceEECCCCcHH-HHHHHHHHcCcceeeEEcCC-CcEEEEEc
Confidence            456788999   665  5789999999997 99999999999999999865 78999986

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=97.58  E-value=9.5e-05  Score=58.63  Aligned_cols=52  Identities=25%  Similarity=0.325  Sum_probs=46.9

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|.+  ++.+++.++++. ++++.+.+++++++||.++  ++++|++.
T Consensus        89 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~~~Giit  140 (165)
T 3fhm_A           89 ASLQQSVSVAMTK--NVVRCQHNSTTD-QLMEIMTGGRFRHVPVEEN--GRLAGIIS  140 (165)
T ss_dssp             GGGTSBGGGTSBS--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccccCCHHHHhcC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            4567899999994  678899999997 9999999999999999987  89999986

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=97.56  E-value=0.00016  Score=58.48  Aligned_cols=62  Identities=16%  Similarity=0.258  Sum_probs=51.2

Q ss_pred             HHHHHHhhh----ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          191 ETTIIAGAL----ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       191 E~~mi~~i~----~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++++...    ...+.+++++|.|  +..+++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus        58 ~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~~Givt  123 (184)
T 1pvm_A           58 ERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVT  123 (184)
T ss_dssp             HHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEE
T ss_pred             HHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEE
Confidence            344555544    3567899999997  678899999997 99999999999999999764 78999986

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=97.55  E-value=6.3e-05  Score=57.09  Aligned_cols=51  Identities=27%  Similarity=0.492  Sum_probs=46.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  +..+++.++++. ++++.+.+++++++||.++  ++++|++.
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~--g~~~Giit  121 (133)
T 1y5h_A           71 PNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVT  121 (133)
T ss_dssp             TTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccccCHHHHhcC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            457899999997  778899999997 9999999999999999987  79999986

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=97.55  E-value=8.8e-05  Score=58.25  Aligned_cols=52  Identities=25%  Similarity=0.447  Sum_probs=46.3

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|.|   +.+++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus        92 ~~~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit  143 (157)
T 1o50_A           92 RLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPVVDEK-GEIVGDLN  143 (157)
T ss_dssp             CCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             HHcCCcHHHHcCC---CeEECCCCCHH-HHHHHHHHCCCcEEEEEcCC-CEEEEEEE
Confidence            3567899999998   78899999997 99999999999999999754 78999986

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=97.53  E-value=8.2e-05  Score=56.99  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             cccccccccccccc----eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~----~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.++.    ++.+++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus        74 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit  131 (144)
T 2nyc_A           74 DLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLT  131 (144)
T ss_dssp             -CCSBHHHHHHHCC------CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEE
T ss_pred             cCCccHHHHHhcCccccCCCeEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CCEEEEEE
Confidence            45789999999864    789999999997 99999999999999999854 78999986

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=97.53  E-value=7.1e-05  Score=57.80  Aligned_cols=53  Identities=25%  Similarity=0.502  Sum_probs=44.9

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|.|  +..+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        81 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~~~l~Vvd~~-g~~~Giit  133 (152)
T 4gqw_A           81 KTNGKLVGDLMTP--APLVVEEKTNLE-DAAKILLETKYRRLPVVDSD-GKLVGIIT  133 (152)
T ss_dssp             ---CCBHHHHSEE--SCCCEESSSBHH-HHHHHHHHSSCCEEEEECTT-SBEEEEEE
T ss_pred             HhccccHHHhcCC--CceEECCCCcHH-HHHHHHHHCCCCEEEEECCC-CcEEEEEE
Confidence            3457899999997  567899999997 99999999999999999753 78999986

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=97.52  E-value=8.1e-05  Score=55.69  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=42.8

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|+|+|+|  ++.+++.++++. ++++.+.+++++++||.+  .++++|++.
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~-~a~~~~~~~~~~~~~Vvd--~~~~~G~it   48 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVK--EGVRVGIVT   48 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEE--TTEEEEEEE
T ss_pred             CHHHhcCC--CceEECCCCcHH-HHHHHHHHcCCCEEEEEe--CCeeEEEEe
Confidence            68999987  788999999997 999999999999999998  378999986

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.50  E-value=2.1e-05  Score=74.17  Aligned_cols=79  Identities=19%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCC-----HhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCC
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELT-----HDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGH  238 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~-----~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~  238 (258)
                      .+|++++...+...+    .-|.+.     +++.+++.++     ++++++|+  .+.++++.++++. ++++.+.+++|
T Consensus        52 tVTe~~lA~ala~~G----GiGvI~~~~~~e~~a~~v~~v-----k~~~~~m~--~~~v~v~~~~tv~-ea~~~m~~~~~  119 (490)
T 4avf_A           52 TVTEARLAIAMAQEG----GIGIIHKNMGIEQQAAEVRKV-----KKHETAIV--RDPVTVTPSTKII-ELLQMAREYGF  119 (490)
T ss_dssp             TTCSHHHHHHHHHHT----SEEEECCSSCHHHHHHHHHHH-----HHCCC------------------------------
T ss_pred             hhCHHHHHHHHHHcC----CCccccCCCCHHHHHHHhhhh-----cccccCcc--cCceEeCCCCcHH-HHHHHHHHhCC
Confidence            578999998886422    224454     6778888888     46788998  4788999999997 99999999999


Q ss_pred             ceeeeeeCCCCcEEEEEE
Q 025093          239 SRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       239 SR~PVy~~~~D~IvGiv~  256 (258)
                      |++||++  .++++|+|+
T Consensus       120 s~~pVvd--~g~lvGIVt  135 (490)
T 4avf_A          120 SGFPVVE--QGELVGIVT  135 (490)
T ss_dssp             ------------------
T ss_pred             CEEEEEE--CCEEEEEEE
Confidence            9999998  488999986

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.50  E-value=6.5e-05  Score=71.26  Aligned_cols=53  Identities=15%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             cccccccccccccceEEEEeCC-CCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDIN-AKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~-~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |.+.+|+|+|++  ++++++.+ +++. ++++.+.+++++++||++++.++++|+|+
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~-ea~~~m~~~~~~~lpVvd~~~g~lvGiVt  434 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVG-EAIALMKKHRVDQLPVVDQDDGSVLGVVG  434 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHH-HHHHHHHHHTCSEEEEECTTTCCEEEEEE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHH-HHHHHHHHcCCCeEEEEECCCCEEEEEEE
Confidence            567999999984  78889999 9997 99999999999999999855689999996

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=97.46  E-value=0.00012  Score=56.27  Aligned_cols=51  Identities=14%  Similarity=0.155  Sum_probs=44.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|   ..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        67 ~~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit  117 (136)
T 3lfr_A           67 GDSDDVKKLLRP---ATFVPESKRLN-VLLREFRANHNHMAIVIDEY-GGVAGLVT  117 (136)
T ss_dssp             GGGCCGGGTCBC---CCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEE
T ss_pred             CCCcCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEE
Confidence            457789999976   78899999997 99999999999999999753 78999986

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=97.46  E-value=0.00014  Score=57.38  Aligned_cols=51  Identities=18%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  ++.+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        75 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGiit  125 (160)
T 2o16_A           75 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIIT  125 (160)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEEC
T ss_pred             hcccCHHHHhcC--CCeEECCCCCHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEE
Confidence            357899999996  789999999997 9999999999999999987  89999985

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=97.44  E-value=0.00015  Score=54.98  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=45.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|  +..+++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~l~Vvd~~-g~~~Giit  115 (133)
T 2ef7_A           65 LETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDDK-GNLKGIIS  115 (133)
T ss_dssp             TTCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             cccCHHHHcCC--CCEEECCCCCHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence            35789999986  678899999997 99999999999999999754 78999986

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=97.37  E-value=0.0001  Score=58.79  Aligned_cols=51  Identities=20%  Similarity=0.280  Sum_probs=45.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+|+++|++  ++.+++.++++. ++++.+.+++..++||.++  ++++|+|.
T Consensus       102 ~~~~~v~~im~~--~~~tv~~~~~l~-~a~~~m~~~~~~~lpVvd~--g~lvGivt  152 (170)
T 4esy_A          102 GRKLTASAVMTQ--PVVTAAPEDSVG-SIADQMRRHGIHRIPVVQD--GVPVGIVT  152 (170)
T ss_dssp             HTTCBHHHHCBC--CSCCBCTTSBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEE
T ss_pred             ccccchhhhccc--CcccCCcchhHH-HHHHHHHHcCCcEEEEEEC--CEEEEEEE
Confidence            457799999986  778899999997 9999999999999999985  78999986

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=97.35  E-value=0.00017  Score=56.02  Aligned_cols=52  Identities=17%  Similarity=0.259  Sum_probs=46.1

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+.+++++|.+.  ..+++.++++. ++++.+.+++++++||.+++  +++|++.
T Consensus        91 ~~~~~~v~~~m~~~--~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~--~~~Giit  142 (149)
T 3k2v_A           91 DMRDASIADVMTRG--GIRIRPGTLAV-DALNLMQSRHITCVLVADGD--HLLGVVH  142 (149)
T ss_dssp             CCTTCBHHHHSEES--CCEECTTCBHH-HHHHHHHHHTCSEEEEEETT--EEEEEEE
T ss_pred             CcccCcHHHHcCCC--CeEECCCCCHH-HHHHHHHHcCCCEEEEecCC--EEEEEEE
Confidence            34678999999864  57899999997 99999999999999999875  9999986

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=97.31  E-value=0.00062  Score=54.39  Aligned_cols=60  Identities=15%  Similarity=0.116  Sum_probs=48.2

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++....+-.+.+++++|   .+..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        95 ~dl~~~~~~~~~~~v~~im---~~~~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~-g~lvGiit  154 (172)
T 3lhh_A           95 KQLLSESIAGERLELVDLV---KNCNFVPNSLSGM-ELLEHFRTTGSQMVFVVDEY-GDLKGLVT  154 (172)
T ss_dssp             HHHHHHHHTTCCCCGGGGC---BCCEEEETTCCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             HHHHHHHhhcCcccHHHHh---cCCeEeCCCCCHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEee
Confidence            3444444433478999999   4678899999997 99999999999999999753 68999986

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=97.29  E-value=0.00053  Score=53.03  Aligned_cols=60  Identities=12%  Similarity=0.128  Sum_probs=48.1

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++....+-.+.+++++|.   +..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        76 ~dl~~~~~~~~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~~~Giit  135 (148)
T 3lv9_A           76 RDLYNQKINENKIELEEILR---DIIYISENLTID-KALERIRKEKLQLAIVVDEY-GGTSGVVT  135 (148)
T ss_dssp             HHHHHHHHHHSCCCGGGTCB---CCEEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SSEEEEEE
T ss_pred             HHHHHHHhcCCCccHHHhcC---CCeEECCCCCHH-HHHHHHHhcCCeEEEEEeCC-CCEEEEEE
Confidence            44444433333789999992   468899999997 99999999999999999753 68999986

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=97.29  E-value=0.00043  Score=52.41  Aligned_cols=50  Identities=18%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|   ..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        70 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~~vGivt  119 (130)
T 3i8n_A           70 GQKQLGAVMRP---IQVVLNNTALP-KVFDQMMTHRLQLALVVDEY-GTVLGLVT  119 (130)
T ss_dssp             TTSBHHHHSEE---CCEEETTSCHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEE
T ss_pred             CcCCHHHHhcC---CcCcCCCCcHH-HHHHHHHHcCCeEEEEEcCC-CCEEEEEE
Confidence            46789999964   67899999997 99999999999999999753 78999986

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=97.27  E-value=0.00043  Score=52.44  Aligned_cols=50  Identities=18%  Similarity=0.159  Sum_probs=43.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|   ..+++.++++. ++++.+.+++..++||.++ .++++|++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~-~g~~~Giit  116 (129)
T 3jtf_A           67 PALDIRSLVRP---AVFIPEVKRLN-VLLREFRASRNHLAIVIDE-HGGISGLVT  116 (129)
T ss_dssp             TTSCGGGGCBC---CCEEETTCBHH-HHHHHHHTSSCCEEEEECC--CCEEEEEE
T ss_pred             CCcCHHHHhCC---CeEeCCCCcHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEE
Confidence            56789999976   67899999997 9999999999999999975 368999986

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=97.27  E-value=0.00032  Score=52.93  Aligned_cols=50  Identities=10%  Similarity=0.142  Sum_probs=43.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|   ..+++.++++. ++++.+.+++..++||.++ .++++|++.
T Consensus        67 ~~~~v~~~m~~---~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~g~~~Giit  116 (127)
T 3nqr_A           67 EAFSMDKVLRT---AVVVPESKRVD-RMLKEFRSQRYHMAIVIDE-FGGVSGLVT  116 (127)
T ss_dssp             CCCCHHHHCBC---CCEEETTCBHH-HHHHHHHHTTCCEEEEECT-TSCEEEEEE
T ss_pred             CCCCHHHHcCC---CeEECCCCcHH-HHHHHHHhcCCeEEEEEeC-CCCEEEEEE
Confidence            56789999966   46899999997 9999999999999999975 368999986

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=97.26  E-value=0.00063  Score=52.09  Aligned_cols=50  Identities=10%  Similarity=0.148  Sum_probs=44.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+  +..+++.+ ++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        69 ~~~~v~~~m~~--~~~~v~~~-~l~-~a~~~m~~~~~~~l~Vvd~~-g~~~Giit  118 (141)
T 2rih_A           69 LDGPAMPIANS--PITVLDTD-PVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLS  118 (141)
T ss_dssp             TTSBSGGGCBC--CCEEETTS-BHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             CCCCHHHHcCC--CCeEEcCC-CHH-HHHHHHHHcCCeEEEEEcCC-CcEEEEEE
Confidence            36899999986  67889999 997 99999999999999999853 78999986

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=97.20  E-value=0.00066  Score=52.93  Aligned_cols=60  Identities=18%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++....+-.+.+++++| +  +..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        74 ~dl~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~~vGivt  133 (153)
T 3oco_A           74 YDIVRQARIDDKAKISTIM-R--DIVSVPENMKVP-DVMEEMSAHRVPMAIVIDEY-GGTSGIIT  133 (153)
T ss_dssp             HHHHHHHHHHTTSBGGGTC-B--CCEEEETTSBHH-HHHHHHHHTTCSCEEEECTT-SCEEEEEC
T ss_pred             HHHHhHHhcCCCCcHHHHh-C--CCeEECCCCCHH-HHHHHHHHcCCcEEEEEeCC-CCEEEEee
Confidence            4444443333478999999 2  678899999997 99999999999999999753 78999985

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=97.19  E-value=0.00026  Score=53.87  Aligned_cols=52  Identities=25%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcC-----CceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~-----~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  +..+++.++++. ++++.+.+++     ++++||.+++ ++++|++.
T Consensus        70 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~~~~~~l~Vvd~~-g~~~Giit  126 (138)
T 2p9m_A           70 TLETTIGDVMTK--DVITIHEDASIL-EAIKKMDISGKKEEIINQLPVVDKN-NKLVGIIS  126 (138)
T ss_dssp             CSSCBHHHHSCS--SCCCEETTSBHH-HHHHHHTCC-----CCCEEEEECTT-SBEEEEEE
T ss_pred             cCCcCHHHHhCC--CcEEECCCCCHH-HHHHHHHhcCCccccccEEEEECCC-CeEEEEEE
Confidence            457899999996  678899999997 9999999999     9999999854 78999986

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=97.18  E-value=0.00038  Score=54.66  Aligned_cols=50  Identities=16%  Similarity=0.159  Sum_probs=44.6

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|   ..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus       101 ~~~~v~~im~~---~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-g~~~Givt  150 (156)
T 3oi8_A          101 EQFHLKSILRP---AVFVPEGKSLT-ALLKEFREQRNHMAIVIDEY-GGTSGLVT  150 (156)
T ss_dssp             GGCCHHHHCBC---CCEEETTSBHH-HHHHHHHHTTCCEEEEECTT-SSEEEEEE
T ss_pred             CcccHHHHcCC---CEEECCCCCHH-HHHHHHHhcCCeEEEEECCC-CCEEEEEE
Confidence            57789999976   68899999997 99999999999999999764 78999986

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=97.11  E-value=0.00066  Score=51.57  Aligned_cols=50  Identities=18%  Similarity=0.127  Sum_probs=43.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++.+++++|.   +..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        68 ~~~~v~~~m~---~~~~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~-g~lvGiit  117 (130)
T 3hf7_A           68 TKEIMLRAAD---EIYFVPEGTPLS-TQLVKFQRNKKKVGLVVDEY-GDIQGLVT  117 (130)
T ss_dssp             CHHHHHHHSB---CCCEEETTCBHH-HHHHHHHHHCCCEEEEECTT-SCEEEEEE
T ss_pred             chhhHHHhcc---CCeEeCCCCcHH-HHHHHHHhcCCeEEEEEcCC-CCEEEEee
Confidence            4568999994   467899999997 99999999999999999753 78999986

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=97.07  E-value=0.00039  Score=55.28  Aligned_cols=53  Identities=26%  Similarity=0.486  Sum_probs=46.2

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|+|  +..+++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus        94 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~~vGiit  146 (180)
T 3sl7_A           94 KTYGKVVGDLMTP--SPLVVRDSTNLE-DAARLLLETKFRRLPVVDAD-GKLIGILT  146 (180)
T ss_dssp             TTTTCBHHHHSEE--SCCCEETTSBHH-HHHHHHTTSTTCEEEEECTT-CBEEEEEE
T ss_pred             ccccccHHHHhCC--CceEeCCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEE
Confidence            4567899999996  457899999997 99999999999999999753 78999986

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=97.07  E-value=0.00071  Score=59.17  Aligned_cols=54  Identities=17%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             cccccccccccccc----eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~----~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+|+++|+++.    ++.+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus       253 ~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~l~Giit  310 (323)
T 3t4n_C          253 DLSLSVGEALMRRSDDFEGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLT  310 (323)
T ss_dssp             HTTSBHHHHGGGSCTTCCCCEEECTTCBHH-HHHHHHHHSCCCEEEEECTT-SBEEEEEE
T ss_pred             hccCCHHHHHhhccccCCCCEEECCCCCHH-HHHHHHHHhCCCEEEEECCC-CcEEEEEE
Confidence            44679999999987    899999999997 99999999999999999754 78999986

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=97.06  E-value=0.00092  Score=51.98  Aligned_cols=50  Identities=16%  Similarity=0.249  Sum_probs=44.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  ++.+++.++++. ++++.+.++++  +||.+++ ++++|++.
T Consensus        80 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--l~Vvd~~-g~~~Giit  129 (157)
T 2emq_A           80 LETMKVEEVMNR--NIPRLRLDDSLM-KAVGLIVNHPF--VCVENDD-GYFAGIFT  129 (157)
T ss_dssp             GGTCBGGGTCBC--CCCEEETTSBHH-HHHHHHHHSSE--EEEECSS-SSEEEEEE
T ss_pred             hcCCcHHHHhCC--CCceecCCCcHH-HHHHHHhhCCE--EEEEcCC-CeEEEEEE
Confidence            467899999997  678899999997 99999999988  9999754 78999986

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=97.03  E-value=0.0011  Score=52.94  Aligned_cols=51  Identities=10%  Similarity=0.188  Sum_probs=45.5

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.+  +..+++.++++. ++++.+.+++++++||.+  .++++|++.
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd--~g~~vGiit  155 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTH--NGRLLGIIT  155 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEE--TTEEEEEEE
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHH-HHHHHHHhCCCcEEEEEE--CCEEEEEEE
Confidence            467899999986  578899999997 999999999999999998  378999986

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=97.02  E-value=0.0012  Score=45.36  Aligned_cols=39  Identities=10%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++++.++++. |+.+.+.+++++.+||.++  ++++||+.
T Consensus         1 k~vtv~p~~tv~-ea~~~M~~~~i~~~~V~d~--~~lvGIvT   39 (70)
T 3ghd_A            1 KAIVVQPKDTVD-RVAKILSRNKAGSAVVMEG--DEILGVVT   39 (70)
T ss_dssp             CEEEECTTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEE
T ss_pred             CCEEECCCCcHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            467899999997 9999999999999999975  78999984

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=97.01  E-value=0.00055  Score=58.45  Aligned_cols=53  Identities=21%  Similarity=0.325  Sum_probs=45.7

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+++++|++  ++.+++.++++. ++.+.+.+++++++||.++ .++++|++.
T Consensus       217 ~~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~-~~~lvGiit  269 (282)
T 2yzq_A          217 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRG-EGDLIGLIR  269 (282)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEET-TTEEEEEEE
T ss_pred             hhccCCHHHhcCC--CCceeCCCCCHH-HHHHHHHHcCcceeEEECC-CCCEEEEEe
Confidence            3457899999996  778999999997 9999999999999999985 358999986

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=97.00  E-value=0.00058  Score=53.49  Aligned_cols=50  Identities=20%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  ++.+++.++++. ++++.+.++++  +||.+++ ++++|++.
T Consensus        83 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~--lpVvd~~-g~~vGiit  132 (159)
T 1yav_A           83 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNGF--VCVENDE-QVFEGIFT  132 (159)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCSE--EEEECTT-CBEEEEEE
T ss_pred             hccCCHHHhcCC--CCceEcCCCCHH-HHHHHHHhCCE--EEEEeCC-CeEEEEEE
Confidence            567899999998  678899999997 99999999887  9999864 78999986

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=97.00  E-value=0.00078  Score=50.73  Aligned_cols=49  Identities=12%  Similarity=0.111  Sum_probs=43.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++++|.+  +..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus        68 ~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~~-g~~~Giit  116 (128)
T 3gby_A           68 EKLGEELLE--TVRSYRPGEQLF-DNLISVAAAKCSVVPLADED-GRYEGVVS  116 (128)
T ss_dssp             CBCCGGGCB--CCCCBCTTSBGG-GSHHHHHHCSSSEEEEECTT-CBEEEEEE
T ss_pred             CcHHHHccC--CCcEECCCCCHH-HHHHHHHhCCCcEEEEECCC-CCEEEEEE
Confidence            679999985  667899999997 99999999999999999753 78999986

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=96.99  E-value=0.00048  Score=59.52  Aligned_cols=52  Identities=21%  Similarity=0.224  Sum_probs=47.3

Q ss_pred             hccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          199 LELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       199 ~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+....+|+|+|++  ++.+++.++++. ++++.+.+++++++||++   ++++|++.
T Consensus        15 ~~~~~~~V~dim~~--~~~~v~~~~~v~-~a~~~m~~~~~~~~~V~d---~~l~GivT   66 (296)
T 3ddj_A           15 LYFQGMNIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVAN---EKIEGLLT   66 (296)
T ss_dssp             CTTCCSSGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEES---SSEEEEEE
T ss_pred             hhhcccCHHHhccC--CCcEECCCccHH-HHHHHHHHCCCceEEEEC---CeEEEEEe
Confidence            35678899999997  789999999997 999999999999999997   89999985

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=96.99  E-value=0.0013  Score=50.86  Aligned_cols=50  Identities=10%  Similarity=0.265  Sum_probs=43.3

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.+  +..+++.++++. ++++.+.++++  +||.+++ ++++|++.
T Consensus        84 ~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~~~~~~~--l~Vvd~~-g~~~Giit  133 (150)
T 3lqn_A           84 LEEMKVEQVMKQ--DIPVLKLEDSFA-KALEMTIDHPF--ICAVNED-GYFEGILT  133 (150)
T ss_dssp             GGGCBGGGTCBS--SCCEEETTCBHH-HHHHHHHHCSE--EEEECTT-CBEEEEEE
T ss_pred             HhcCCHHHHhcC--CCceeCCCCCHH-HHHHHHHhCCE--EEEECCC-CcEEEEEE
Confidence            467899999995  678899999997 99999999987  9999753 78999986

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=96.96  E-value=0.0014  Score=49.77  Aligned_cols=51  Identities=20%  Similarity=0.323  Sum_probs=44.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.|  +..+++.++++. ++++.+.+++++++ |.+++ ++++|++.
T Consensus        69 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l-Vvd~~-g~~~Giit  119 (138)
T 2yzi_A           69 PYDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHI-LIEEE-GKIVGIFT  119 (138)
T ss_dssp             CTTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEE-EEEET-TEEEEEEE
T ss_pred             cccCCHHHHhhC--CCeEECCCCcHH-HHHHHHHhcCCCEE-EECCC-CCEEEEEE
Confidence            457899999986  678899999997 99999999999999 99854 78999986

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=96.77  E-value=0.0015  Score=54.06  Aligned_cols=52  Identities=15%  Similarity=0.220  Sum_probs=45.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      -.+.+++++|++  ++.+++.++++. ++++.+.+++..++||.+++ +.++|+|.
T Consensus       113 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVD~~-g~lvGiIT  164 (205)
T 3kxr_A          113 EPHEPLISLLSE--DSRALTANTTLL-DAAEAIEHSREIELPVIDDA-GELIGRVT  164 (205)
T ss_dssp             CTTSBGGGGCCS--SCCCEETTSCHH-HHHHHHHTSSCSEEEEECTT-SBEEEEEE
T ss_pred             CCcchHHHHhcC--CCeEECCCCCHH-HHHHHHHhcCCCEEEEEcCC-CeEEEEEE
Confidence            357889999985  578899999997 99999999999999999753 68999986

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=96.73  E-value=0.0015  Score=55.76  Aligned_cols=51  Identities=20%  Similarity=0.246  Sum_probs=40.7

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|  +..+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus        58 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit  108 (282)
T 2yzq_A           58 DEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDSK-GKPVGILT  108 (282)
T ss_dssp             ------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             ccCCHHHHcCC--CCcEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CEEEEEEE
Confidence            46789999997  478899999997 99999999999999999875 78999985

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=96.53  E-value=0.0023  Score=49.89  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=44.6

Q ss_pred             ccccccccccccc----eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~----~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.+..    ...+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        82 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~--g~l~Giit  137 (164)
T 2pfi_A           82 HQQCLQDILARGCPTEPVTLTLFSETTLH-QAQNLFKLLNLQSLFVTSR--GRAVGCVS  137 (164)
T ss_dssp             CCCBHHHHHHTTCCCBCCCCCEETTCBHH-HHHHHHHHTTCSEEEEEET--TEEEEEEE
T ss_pred             ccchhhhhhcccccccCCceEECCCCcHH-HHHHHHHHhCCCEEEEEEC--CEEEEEEE
Confidence            4678999998642    267899999997 9999999999999999983  78999986

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=96.50  E-value=0.00042  Score=65.39  Aligned_cols=54  Identities=26%  Similarity=0.415  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.+|+++|+|+++..+++.+++++ ++++.+.+++.+++||.+++ ++++|+|..
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~  212 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLS-EANKIIWEKKLNALPIIDDD-QHLRYIVFR  212 (503)
T ss_dssp             --------------------------------------------------------
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHH-HHHHHHHHcCCCEEEEEcCC-CeEEEEEEe
Confidence            5678999999998999999999997 99999999999999999865 789999863

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=96.47  E-value=0.0036  Score=51.83  Aligned_cols=49  Identities=12%  Similarity=0.101  Sum_probs=42.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      -++.++|+  .++.+++.++++. ++++.+.+++++++||.+++ +.++|++.
T Consensus        13 ~~~~~~~~--~~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~l~Givt   61 (213)
T 1vr9_A           13 MKVKKWVT--QDFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVN   61 (213)
T ss_dssp             CBGGGGCB--SCSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEE
T ss_pred             cCHHHhhc--CCCeEECCCCcHH-HHHHHHHHCCCCEEEEEcCC-CEEEEEEE
Confidence            36677776  4788899999997 99999999999999999754 78999986

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=96.44  E-value=0.0028  Score=54.70  Aligned_cols=53  Identities=19%  Similarity=0.402  Sum_probs=46.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      -.+.+++++|.+  ++.+++.++++. ++++.+.+++.+++||.+++ +.++|+|..
T Consensus       196 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~-g~lvGivT~  248 (278)
T 2yvy_A          196 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTV  248 (278)
T ss_dssp             CTTCBSTTTSBS--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEH
T ss_pred             CCCCcHHHHhCC--CCeEEeCCCCHH-HHHHHHHhcCCCEEEEEeCC-CeEEEEEEH
Confidence            367899999975  578899999997 99999999999999999754 789999863

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=96.36  E-value=0.0033  Score=55.08  Aligned_cols=53  Identities=15%  Similarity=0.215  Sum_probs=46.6

Q ss_pred             cccccccccccc----ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPI----AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR----~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.++    .++.+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus       249 ~~~~v~~~m~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-g~l~Giit  305 (334)
T 2qrd_G          249 LDLSVGEALLKRPANFDGVHTCRATDRLD-GIFDAIKHSRVHRLFVVDEN-LKLEGILS  305 (334)
T ss_dssp             GGSBHHHHHTTCCTTCCCCCEECTTCBHH-HHHHHHHHSCCCEEEEECTT-CBEEEEEE
T ss_pred             ccCcHHHHHhcccccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEECCC-CeEEEEEe
Confidence            467899999975    5788999999997 99999999999999999753 68999986

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=96.26  E-value=0.0033  Score=59.44  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=48.2

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .-.+.+++++|+| .+.++++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus       171 ~~~~~~V~~vM~~-~~~vtv~~~~~l~-eal~~m~~~~i~~lpVVDe~-g~l~GiIT  224 (511)
T 3usb_A          171 QDYSIKISDVMTK-EQLITAPVGTTLS-EAEKILQKYKIEKLPLVDNN-GVLQGLIT  224 (511)
T ss_dssp             CCSSSBHHHHCCC-CCCCCEETTCCHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEE
T ss_pred             ccCCCcHHHhccc-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEeCC-CCEeeecc
Confidence            3457889999998 7889999999997 99999999999999999764 78999986

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=96.22  E-value=0.0038  Score=54.31  Aligned_cols=53  Identities=13%  Similarity=0.312  Sum_probs=46.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ..+.+++++|.+  ++.+++.++++. ++.+.+.+++.+++||.+++ +.++|+|..
T Consensus       198 ~~~~~v~~im~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIT~  250 (286)
T 2oux_A          198 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVTV  250 (286)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEEH
T ss_pred             CCCCcHHHHcCC--CCeeecCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEEH
Confidence            357889999986  578899999997 99999999999999999753 789999863

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=96.16  E-value=0.0024  Score=54.14  Aligned_cols=51  Identities=20%  Similarity=0.327  Sum_probs=44.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|++  +..+++.++++. ++++.+.+++++++||.++ .++++|++.
T Consensus       221 ~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd~-~g~~~Givt  271 (280)
T 3kh5_A          221 TNVRMEEIMKR--DVITAKEGDKLK-KIAEIMVTNDIGALPVVDE-NLRIKGIIT  271 (280)
T ss_dssp             HHCBHHHHSBS--SCCCBCTTCBHH-HHHHHHHHHTCCEEEEECT-TCBEEEEEE
T ss_pred             hCCcHHHHhcC--CCEEECCCCCHH-HHHHHHHHCCCCEEEEECC-CCeEEEEEe
Confidence            56889999974  678899999997 9999999999999999975 368999986

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=96.10  E-value=0.0042  Score=49.88  Aligned_cols=41  Identities=10%  Similarity=0.095  Sum_probs=37.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE  247 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~  247 (258)
                      .+|+++|++  ++++++.++++. ++++.+.+++++++||++++
T Consensus         9 ~~v~~im~~--~~~~v~~~~~l~-ea~~~~~~~~~~~~pVvd~~   49 (184)
T 1pvm_A            9 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN   49 (184)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT
T ss_pred             cCHHHhcCC--CCeEECCCCcHH-HHHHHHHHcCCCEEEEEcCC
Confidence            789999984  788999999997 99999999999999999753

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.06  E-value=0.001  Score=62.63  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      .+.+++|+|+|+.+.++++.+++++ ++++.+.+++..++||.+++ ++++|++..
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-g~lvGiIT~  198 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLE-EMKAKLYENRIEKMLVVDEN-FYLRGLVTF  198 (490)
T ss_dssp             --------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEeh
Confidence            4678999999988899999999997 99999999999999999754 789998753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=96.05  E-value=0.0031  Score=49.73  Aligned_cols=50  Identities=12%  Similarity=0.294  Sum_probs=41.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+.+|+++|++  ++.+++.++++. ++++.+.++++  +||.+++ ++++|+|.
T Consensus        83 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~--lpVVd~~-g~l~GiiT  132 (156)
T 3k6e_A           83 MADTDIVHMTKT--DVAVVSPDFTIT-EVLHKLVDESF--LPVVDAE-GIFQGIIT  132 (156)
T ss_dssp             HTTSBGGGTCBC--SCCCBCTTCCHH-HHHHHTTTSSE--EEEECTT-SBEEEEEE
T ss_pred             ccccCHHHhhcC--CceecccccHHH-HHHHHHHHcCC--eEEEecC-CEEEEEEE
Confidence            457899999985  678899999997 99999987765  9999753 78999986

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.94  E-value=0.0014  Score=61.80  Aligned_cols=53  Identities=19%  Similarity=0.234  Sum_probs=41.5

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++|+|+|+.+.++++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus       147 ~~~~v~diM~p~~~~vtv~~~~~l~-ea~~~m~~~~i~~lpVVDe~-G~l~GiIT  199 (496)
T 4fxs_A          147 LTKSVAAVMTPKERLATVKEGATGA-EVQEKMHKARVEKILVVNDE-FQLKGMIT  199 (496)
T ss_dssp             TTSBGGGTSEEGGGCCEEECC-----CGGGTCC---CCCEEEECTT-SBCCEEEC
T ss_pred             CCCcHHHHhcCCCCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CCEEEeeh
Confidence            5678999999998899999999997 99999999999999999764 78999985

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.94  E-value=0.0021  Score=60.32  Aligned_cols=58  Identities=16%  Similarity=0.318  Sum_probs=7.2

Q ss_pred             hHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          190 DETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       190 ~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++.+.++.     +++++|++  ++++++.+++++ ++++.+.+++++++||++++ ++++|+|.
T Consensus        86 ~~~~~v~~v~-----~~~~iM~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~-~~lvGivt  143 (494)
T 1vrd_A           86 EQARQVSIVK-----KTENGIIY--DPITVTPDMTVK-EAIDLMAEYKIGGLPVVDEE-GRLVGLLT  143 (494)
T ss_dssp             HHHHHHHHHH-----TC--------------------------------------------------
T ss_pred             HHHHHHHhhh-----hHhhcCcc--CCeEECCCCCHH-HHHHHHHHcCceEEEEEcCC-CEEEEEEE
Confidence            4456677765     46789986  789999999997 99999999999999999864 68999985

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.88  E-value=0.0013  Score=61.63  Aligned_cols=53  Identities=19%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|+|+.+..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus       153 ~~~~v~~im~~~~~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt  205 (494)
T 1vrd_A          153 LSKKIKDLMTPREKLIVAPPDISLE-KAKEILHQHRIEKLPLVSKD-NKLVGLIT  205 (494)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCcHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCcEEEEEcCC-CeEEEEEE
Confidence            4578999999988999999999997 99999999999999999864 78999986

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=95.87  E-value=0.0079  Score=56.20  Aligned_cols=59  Identities=19%  Similarity=0.402  Sum_probs=49.3

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      ++++..   -.+.+++++|++  ++.+++.+++++ ++.+.+.+++..++||.+++ ++++|++..
T Consensus       210 ~Dll~~---~~~~~v~dim~~--~~~~v~~~~~l~-ea~~~m~~~~~~~lpVVDe~-g~lvGiIT~  268 (473)
T 2zy9_A          210 RDLIVA---DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVTV  268 (473)
T ss_dssp             HHHHHS---CTTSBGGGTSBS--SCCCEESSSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEEH
T ss_pred             HHHhcC---CCCCcHHHHhCC--CCeEEeCCCcHH-HHHHHHHhcCCcEEEEEcCC-CEEEEEEeh
Confidence            345542   367899999985  688999999997 99999999999999999764 789999863

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=95.83  E-value=0.011  Score=47.28  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=45.6

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ++++....+-.+.+++ +|.   ++.+++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus        89 ~Dl~~~~~~~~~~~v~-~~~---~~~~v~~~~~l~-~al~~m~~~~~~~~~Vvde~-g~lvGiIT  147 (173)
T 3ocm_A           89 KDLVADLITEGRVRRN-RLR---DPIIVHESIGIL-RLMDTLKRSRGQLVLVADEF-GAIEGLVT  147 (173)
T ss_dssp             HHHHHHHHHHSSCCGG-GSB---CCCEECGGGCHH-HHHHHHHHSTTCCEEEECTT-CCEEEEEC
T ss_pred             HHHHHHHhcCCcchhH-hcC---CCeEECCCCcHH-HHHHHHHHcCCeEEEEEeCC-CCEEEEEe
Confidence            4455444333567788 553   467899999997 99999999999999999753 78999985

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=95.79  E-value=0.0087  Score=52.34  Aligned_cols=52  Identities=15%  Similarity=0.278  Sum_probs=45.7

Q ss_pred             ccccccccccc----ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPI----AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR----~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++|.++    .+..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus       258 ~~~v~~~~~~~~~~~~~~~~v~~~~~l~-~a~~~m~~~~~~~l~Vvd~~-g~l~Giit  313 (330)
T 2v8q_E          258 DVSVTKALQHRSHYFEGVLKCYLHETLE-AIINRLVEAEVHRLVVVDEH-DVVKGIVS  313 (330)
T ss_dssp             SSBHHHHGGGCCSCCCSCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEE
T ss_pred             cCcHHHHHhccccccCCCeEECCCCcHH-HHHHHHHHCCCcEEEEEcCC-CcEEEEEe
Confidence            67899999763    6788999999997 99999999999999999764 68999986

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=95.32  E-value=0.013  Score=56.61  Aligned_cols=48  Identities=10%  Similarity=0.059  Sum_probs=40.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +++|+|++  +..+++.|++++ |+.+.+.+++..++||.|+  ++++|+|..
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~-ea~~~M~~~~i~~lpVve~--G~lvGIVT~  616 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVR-QLHFLFVMLMPSMIYVTER--GKLVGIVER  616 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHH-HHHHHHHHTCCSEEEEEET--TEEEEEEEG
T ss_pred             ccchhhcC--CCceecCCCcHH-HHHHHHHhcCCCEEEEEEC--CEEEEEEeh
Confidence            48999986  567899999997 9999999999999999943  789999863

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=95.06  E-value=0.0044  Score=58.44  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=36.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|+|+.+..+++.++++. ++++.+.+++..++||.+++ ++++|++.
T Consensus       171 ~~~~v~~vm~~~~~~~tv~~~~~l~-ea~~~m~~~~~~~lpVVd~~-g~lvGiIt  223 (514)
T 1jcn_A          171 HTTLLSEVMTPRIELVVAPAGVTLK-EANEILQRSKKGKLPIVNDC-DELVAIIA  223 (514)
T ss_dssp             ----------CCBCCCCEETTCCST-TTTTHHHHHTCSCCCEESSS-SCCC----
T ss_pred             CCCCHHHHhCCCCCCeEECCCCCHH-HHHHHHHHcCCCcccEECCC-CeEEEEEE
Confidence            4678999999988999999999998 99999999999999999854 78999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=94.92  E-value=0.0061  Score=57.46  Aligned_cols=57  Identities=9%  Similarity=0.307  Sum_probs=26.3

Q ss_pred             HHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025093          192 TTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       192 ~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~  256 (258)
                      .+.++++     ++++++|++  +.++++.++++. ++++.+.+++++++||.+++  .++++|+|.
T Consensus       101 ~~~v~~v-----~~~~~im~~--~~~~v~~~~tv~-ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt  159 (514)
T 1jcn_A          101 ANEVRKV-----KNFEQGFIT--DPVVLSPSHTVG-DVLEAKMRHGFSGIPITETGTMGSKLVGIVT  159 (514)
T ss_dssp             HHHHHHH-----HTCCTTSCS--SCCCCCC------------------CEESCC--------CCEEC
T ss_pred             HHHHHhh-----hhhhhcccc--CCEEECCCCCHH-HHHHHHHhcCCCEEEEEeCCCcCCEEEEEEE
Confidence            4455554     378899985  577899999997 99999999999999999864  478999985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=94.78  E-value=0.032  Score=52.08  Aligned_cols=52  Identities=17%  Similarity=0.295  Sum_probs=45.9

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|++ .+..+++.+++++ ++++.+.+++..++||.+++ ++++|++.
T Consensus       150 ~~~~v~~im~~-~~~~~v~~~~~l~-~a~~~m~~~~~~~lpVVd~~-g~lvGivt  201 (491)
T 1zfj_A          150 YNAPISEHMTS-EHLVTAAVGTDLE-TAERILHEHRIEKLPLVDNS-GRLSGLIT  201 (491)
T ss_dssp             SSSBTTTSCCC-SCCCCEETTCCHH-HHHHHHHHTTCSEEEEECTT-SBEEEEEE
T ss_pred             CCCcHHHHcCC-CCCEEECCCCCHH-HHHHHHHHcCCCEEEEEcCC-CcEEEEEE
Confidence            57899999996 3678899999997 99999999999999999864 78999985

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=93.80  E-value=0.059  Score=50.78  Aligned_cols=61  Identities=13%  Similarity=0.179  Sum_probs=47.5

Q ss_pred             HHHHHHhhh---ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC---CCcEEEEEE
Q 025093          191 ETTIIAGAL---ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE---PTNIIGLIL  256 (258)
Q Consensus       191 E~~mi~~i~---~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~---~D~IvGiv~  256 (258)
                      ++++++...   ...+.+|+++|++  ++.+++.++++. ++++.+.++++  .||.+++   .++++|||.
T Consensus       435 ~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~--~pVVd~~~~~~g~lvGIVT  501 (527)
T 3pc3_A          435 QETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILG-KLARVLEVDPS--VLILGKNPAGKVELKALAT  501 (527)
T ss_dssp             HHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHH-HHHHHHTTCSE--EEEEEECSSSCEEEEEEEE
T ss_pred             HHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHH-HHHHHHhhCCE--EEEEeCCcccCCeEEEEEE
Confidence            556665554   3457899999985  678899999997 99998866654  6999875   478999986

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=93.39  E-value=0.014  Score=55.07  Aligned_cols=51  Identities=18%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++.|+|+|||  +.++.+.+.+++ |+.+++.+++..++||.+++ ++.+|++.
T Consensus       198 ~~~~V~evMT~--~lvt~~~~~~le-eA~~iL~~~kieklpVVd~~-g~LvGlIT  248 (556)
T 4af0_A          198 AETPIKSVMTT--EVVTGSSPITLE-KANSLLRETKKGKLPIVDSN-GHLVSLVA  248 (556)
T ss_dssp             -------------------------------------------------------
T ss_pred             cceEhhhhccc--ceEEecCCCCHH-HHHHHHHHccccceeEEccC-CcEEEEEE
Confidence            46789999997  699999999997 99999999999999999764 77888874

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=92.07  E-value=0.028  Score=52.62  Aligned_cols=51  Identities=25%  Similarity=0.471  Sum_probs=0.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|+|  +..+++.+++++ ++++.+.+++.+++||.+++ ++++|++.
T Consensus       148 ~~~~v~~im~~--~~~~v~~~~~l~-eal~~m~~~~~~~lpVVde~-g~lvGiiT  198 (486)
T 2cu0_A          148 EGKLVKELMTK--EVITVPESIEVE-EALKIMIENRIDRLPVVDER-GKLVGLIT  198 (486)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCCHHHHccC--CCeEECCcCcHH-HHHHHHHHcCCCEEEEEecC-CeEEEEEE
Confidence            46789999986  678899999997 99999999999999999754 67889875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=85.26  E-value=0.63  Score=39.48  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=39.0

Q ss_pred             ccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          208 DAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       208 eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|.|  ..+++..++++. ++.++|.+.|..++||.++  +.++|||.
T Consensus       193 ~~md~--sP~tv~~~tsL~-~v~~LF~~lglr~l~V~~~--GrLVGIVT  236 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLDRAYVTSM--GKLVGVVA  236 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccccC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEEC--CEEEEEEE
Confidence            36886  678999999997 9999999999999999974  79999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	7e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.004

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 6/55 (10%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLI 255
           +      D +   ++    D + ++ K+    ++  G    P++  +  + +G++
Sbjct: 10  MKSHRCYDLIPTSSKLVVFDTSLQV-KKAFFALVTNGVRAAPLWDSKKQSFVGML 63

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 186 ELTHDETTIIAGALE-LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVY 244
           ++   +   +      +  +T+ D +         D+     K  ++L+        P++
Sbjct: 1   DVQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLF-VKTSLSLLTLNNIVSAPLW 59

Query: 245 YEEPTNIIGLI 255
             E     GL+
Sbjct: 60  DSEANKFAGLL 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.94
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.94
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.57
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.06
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.03
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.02
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.0
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.0
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	97.98
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	97.93
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	97.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.74
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.73
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	97.72
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.7
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	97.69
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	97.61
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	97.6
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	97.57
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	97.53
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	97.53
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	97.52
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.52
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	97.51
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	97.47
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	97.41
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	97.4
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.36
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	97.35
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	97.3
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	97.29
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	97.29
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	97.22
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	97.11
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	97.1
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	97.05
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	97.05
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	96.9
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	96.65
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	96.46
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	96.38
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	96.34
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	96.32
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	96.26
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	96.25
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	96.17
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	96.16
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	96.13
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	95.76
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	95.59
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	94.86
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	94.75

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.94  E-value=2.1e-10  Score=87.41  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             cccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          203 EKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |++|+++|+|++++++++.+++++ ++++.+.++|||++||++++ ++++|+++
T Consensus         1 e~tv~~~mip~~~v~~v~~~~tl~-~a~~~m~~~~~s~~pVvd~~-~~~vGiit   52 (132)
T d1yava3           1 EATVGQFMIEADKVAHVQVGNNLE-HALLVLTKTGYTAIPVLDPS-YRLHGLIG   52 (132)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHH-HHHHHHHHHCCSEEEEECTT-CBEEEEEE
T ss_pred             CCCHHHccccccceEEEcCCCCHH-HHHHHHHhhCCCceEEeecc-cccccEEE
Confidence            689999999999999999999997 99999999999999999876 89999986

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.94  E-value=2.2e-10  Score=91.46  Aligned_cols=69  Identities=12%  Similarity=0.239  Sum_probs=64.9

Q ss_pred             CCHhHHHHHHhhhcc-ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          187 LTHDETTIIAGALEL-TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       187 l~~~E~~mi~~i~~~-~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.|+.+++.+.+| .+.+++|+|+|..++++++.+.++. ++++.+.+++++++||++++.++++|++.
T Consensus         2 ~~~~~~~~~~~i~~fl~~~~~~dvm~~s~~vv~i~~~~~v~-~A~~~m~~~~i~~lpVvd~~~~~~vGiis   71 (179)
T d2ooxe1           2 VQETQKGALKEIQAFIRSRTSYDVLPTSFRLIVFDVTLFVK-TSLSLLTLNNIVSAPLWDSEANKFAGLLT   71 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHSBHHHHSCSEEEEEEEETTSBHH-HHHHHHHHHTCSCEEEEETTTTEEEEEEC
T ss_pred             cCHHHHHHHHHHHHHHcCCEeeeeCCCCCcEEEEECcchHH-HHHHHHHHcCCCeEEEEeCCCCeeEEEEe
Confidence            457889999999997 9999999999999999999999997 99999999999999999988899999985

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=2.7e-08  Score=77.43  Aligned_cols=55  Identities=9%  Similarity=0.306  Sum_probs=51.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      |.+++++|+|.|..++++++.++++. ++++.+.+++++++||++++.++++|++.
T Consensus        10 l~~~t~~Dlm~~~~~vv~l~~~~sv~-eA~~~l~~~~~~~~pVv~~~~~~~vG~is   64 (159)
T d2v8qe2          10 MKSHRCYDLIPTSSKLVVFDTSLQVK-KAFFALVTNGVRAAPLWDSKKQSFVGMLT   64 (159)
T ss_dssp             HHHSBGGGGSCSEEEEEEEETTSBHH-HHHHHHHHHTCSEEEEEETTTTEEEEEEE
T ss_pred             hcCCEEEeECCCCCceEEEcCCCcHH-HHHHHHHHcCCCceeEEECCCCcEEEEEE
Confidence            45789999999999999999999997 99999999999999999988889999985

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.06  E-value=2.3e-06  Score=63.87  Aligned_cols=51  Identities=22%  Similarity=0.381  Sum_probs=46.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.+|+++|++  ++++++.++++. ++.+.+.+++++++||+++  ++++|++.
T Consensus         1 l~~~~V~d~m~~--~~v~v~~~~tl~-~a~~~m~~~~~~~~pV~d~--~~~~Givt   51 (127)
T d2ef7a1           1 MEEEIVKEYMKT--QVISVTKDAKLN-DIAKVMTEKNIGSVIVVDG--NKPVGIIT   51 (127)
T ss_dssp             CCCCBGGGTSBC--SCCEEETTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             CCccCHHHhCCC--CCeEECCcCcHH-HHHHHHHHcCCceEEeecc--cchhhhcc
Confidence            468899999986  799999999997 9999999999999999976  68999985

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.03  E-value=1.3e-06  Score=65.41  Aligned_cols=50  Identities=14%  Similarity=0.208  Sum_probs=45.5

Q ss_pred             cccccccccc-ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPI-AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR-~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +||+|||+.+ .++++++.++++. ++++.+.+++++.+||.++  |+++|++.
T Consensus         2 ~tV~dim~~k~~~v~~i~~~~tl~-~a~~~m~~~~~~~vpV~~~--~~~vGiit   52 (127)
T d2rc3a1           2 KTVKHLLQEKGHTVVAIGPDDSVF-NAMQKMAADNIGALLVMKD--EKLVGILT   52 (127)
T ss_dssp             CBHHHHHHHHCCCCCEECTTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccHHHHHccCCCccEEECCcCcHH-HHHHHHHHcCCCEEEEEEC--CeEEEEEE
Confidence            4899999986 5899999999997 9999999999999999975  78999985

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.5e-06  Score=67.98  Aligned_cols=53  Identities=21%  Similarity=0.360  Sum_probs=44.2

Q ss_pred             cccccccccccceE----EEEeCCCCccHHHHHHHHHcCCceeeeeeCC-CCcEEEEEE
Q 025093          203 EKTASDAMTPIAET----FAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       203 ~~~v~eiM~PR~~v----~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D~IvGiv~  256 (258)
                      .+.|+|||+|+.+.    +.++.+.|++ ++.+++.+++|+++||..++ .+.++|++.
T Consensus         2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~-~a~~ll~~~~~~~~PVV~~~~~~~lvG~is   59 (169)
T d2j9la1           2 KTLAMDVMKPRRNDPLLTVLTQDSMTVE-DVETIISETTYSGFPVVVSRESQRLVGFVL   59 (169)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEE
T ss_pred             ccchhhhcCcCCCCCceEEECCCcCCHH-HHHHHHHHcCCCceeeeecCCCCeEEEEEE
Confidence            46789999998755    5567788997 99999999999999999654 456999986

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.00  E-value=1.9e-06  Score=65.18  Aligned_cols=48  Identities=23%  Similarity=0.505  Sum_probs=43.4

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|+++|+|  ++++++.++|+. ++++.+.+++|+++||++++ ++.+|++.
T Consensus         3 ~V~~iMt~--~v~~v~~~~tl~-~a~~~m~~~~~~~ipVv~~~-~~~~g~i~   50 (141)
T d3ddja1           3 PVKVFMST--KVQTIYKEVRLD-QAVKLMLRRGFRRLPVIDDD-NKVVGIVT   50 (141)
T ss_dssp             BHHHHSBC--SCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             eeHHhCcC--CCeEEcCcCcHH-HHHHHHHHcCCCeeeccccc-Cccccccc
Confidence            68999999  589999999997 99999999999999999864 67889874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.00  E-value=2.1e-06  Score=65.09  Aligned_cols=49  Identities=16%  Similarity=0.279  Sum_probs=44.6

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|+|+|+|  +..+++.++++. ++++.+.+++++++||++++ ++.+|++.
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~lpVvd~~-~~~~Giit   50 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLN-DAKHLMEALDIRHVPIVDAN-KKLLGIVS   50 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             EEHHHhCcC--CCeEECCcCCHH-HHHHHHHHcCCCeeeeeccc-cccccccc
Confidence            479999996  789999999997 99999999999999999865 78999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=1.5e-06  Score=64.50  Aligned_cols=49  Identities=16%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +||+|+|++  ++++++.++++. ++++.+.+++++++||.+++ +.++|++.
T Consensus         1 tt~~diM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~pVvd~~-~~~~Giit   49 (123)
T d1y5ha3           1 TTARDIMNA--GVTCVGEHETLT-AAAQYMREHDIGALPICGDD-DRLHGMLT   49 (123)
T ss_dssp             CCHHHHSEE--TCCCEETTSBHH-HHHHHHHHHTCSEEEEECGG-GBEEEEEE
T ss_pred             CCHHHhcCC--CCcEECCcCcHH-HHHHHHHHcCCCceEEEecc-chhhhhhh
Confidence            689999985  789999999997 99999999999999999764 78999985

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=97.93  E-value=4.6e-06  Score=63.88  Aligned_cols=52  Identities=13%  Similarity=0.210  Sum_probs=46.2

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC-CcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP-TNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~-D~IvGiv~  256 (258)
                      .+.+|+|||++  ++.+++.++++. ++++.+.+++|+.+||++++. +.++|++.
T Consensus         9 ~~~~V~diM~~--~~~~v~~~~tv~-e~~~~l~~~~~~~~PVvd~~~~~~lvg~is   61 (160)
T d2d4za3           9 YNIQVGDIMVR--DVTSIASTSTYG-DLLHVLRQTKLKFFPFVDTPDTNTLLGSID   61 (160)
T ss_dssp             SSCBTTSSSBS--SCCCEETTCBHH-HHHHHHHHCCCSEEEEESCTTTCBEEEEEE
T ss_pred             cceEHHHhcCC--CCeEECCCCcHH-HHHHHHHhcCCCccccccccccccccccch
Confidence            46799999995  899999999997 999999999999999998654 56899875

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=7.9e-06  Score=62.63  Aligned_cols=52  Identities=13%  Similarity=0.132  Sum_probs=46.8

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +++.+++++|.  .++++++.++++. ++++.+.+++++++||.+++ ++++|++.
T Consensus         1 ~~~~~v~~~m~--r~v~~v~~~~~l~-~a~~~m~~~~~~~lPVvd~~-~~lvG~it   52 (156)
T d2yzqa1           1 YKGVEIEPYYQ--RYVSIVWEGTPLK-AALKALLLSNSMALPVVDSE-GNLVGIVD   52 (156)
T ss_dssp             GGGCBSTTTSB--SCCCCEETTSBHH-HHHHHHHTCSSSEEEEECTT-SCEEEEEE
T ss_pred             CCCCCHHHHhc--CCCeEECCcCcHH-HHHHHHHHcCCCEEEEEeCC-CCceeEEe
Confidence            46889999996  4699999999997 99999999999999999764 78999985

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.74  E-value=6.9e-06  Score=60.80  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=32.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +|+++|++  +.++++.++++. ++++.+.+++++++||.+++ ++.+|+++.
T Consensus         2 ~v~diM~~--~~v~v~~~~~v~-~a~~~m~~~~~~~~~Vvd~~-~~~~G~it~   50 (122)
T d2yzqa2           2 RVKTIMTQ--NPVTITLPATRN-YALELFKKYKVRSFPVVNKE-GKLVGIISV   50 (122)
T ss_dssp             BHHHHSEE--SCCCEESSCC-------------CCEEEEECTT-CCEEEEEES
T ss_pred             CcccccCC--CCEEECCcCcHH-HHHHHHHHcCCcEEEEEecc-ccchhhhhc
Confidence            68999997  688999999997 99999999999999999764 799999863

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.73  E-value=1.3e-05  Score=59.11  Aligned_cols=47  Identities=23%  Similarity=0.367  Sum_probs=42.8

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|+|+|++  ++.+++.++|+. |+++.+.+++++.+||.++  ++.+|++.
T Consensus         1 kV~diM~~--~~~~v~~~~sl~-ea~~~~~~~~~~~~~V~~~--~~~~Gvit   47 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLE-DVLRNYVENAKGSSVVVKE--GVRVGIVT   47 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHH-HHHHHHHHHCCCEEEEEET--TEEEEEEE
T ss_pred             ChHHhCCC--CCeEECCcCcHH-HHHHHHHHcCceEEEEEeC--CcEEEEEE
Confidence            47899996  889999999997 9999999999999999975  78999985

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.72  E-value=1.1e-05  Score=62.00  Aligned_cols=50  Identities=14%  Similarity=0.256  Sum_probs=45.5

Q ss_pred             cccccccc-cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTP-IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~P-R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++|+|.+ ++++++++.++++. ++++.+.++++|++||++++ ++++|+++
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~-~a~~~m~~~~~~~lpVvd~~-~~~vG~it   52 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVY-DVIKMLAEKNISAVPIVNSE-GTLLNVYE   52 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHH-HHHHHHHHTTCSEEEEECGG-GBEEEEEE
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHH-HHHHHHHHcCcceEeeeccc-ceEEEEEE
Confidence            57889988 88999999999997 99999999999999999864 78999986

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.70  E-value=2e-05  Score=59.78  Aligned_cols=49  Identities=14%  Similarity=0.170  Sum_probs=44.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|+|+|++  ++.+++.++++. ++++.+.+++++++||++++ ++++|++.
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~-~a~~~m~~~~~~~~~V~d~~-~~~~Giit   51 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVF-DAVKIMNENHLYGLVVKDDN-GNDVGLLS   51 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHH-HHHHHHHHHTCCEEEEECTT-SCEEEEEE
T ss_pred             EEHHHhCCC--CCcEECCcCcHH-HHHHHHHHCCCceEeeeccC-CcccceEE
Confidence            479999985  788999999997 99999999999999999865 79999985

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=1.6e-05  Score=60.24  Aligned_cols=56  Identities=13%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             ccccccccccccc-cceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          200 ELTEKTASDAMTP-IAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       200 ~~~~~~v~eiM~P-R~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +|-.++++|++.+ ..++++++.++++. |+++.+.+++++++||.++ .++++|+++.
T Consensus         5 ~f~~~~l~~l~i~~~~~v~~v~~~~tv~-eal~~m~~~~~~~lpVvd~-~~~~~Gvit~   61 (145)
T d2v8qe1           5 EFMSKSLEELQIGTYANIAMVRTTTPVY-VALGIFVQHRVSALPVVDE-KGRVVDIYSK   61 (145)
T ss_dssp             GGGGSBHHHHTCSBCSSCCCEETTCBHH-HHHHHHHHHCCSEEEEECT-TSBEEEEEEG
T ss_pred             HHhhCCHHHHcCCCCCCceEEcCcCcHH-HHHHHHHHcCCCccccccc-CCceEEEEEc
Confidence            3456789999876 46899999999997 9999999999999999975 3679999863

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=2.8e-05  Score=58.59  Aligned_cols=54  Identities=11%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             ccccccccc-ccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDA-MTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~ei-M~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +=+++++|+ +.+..++++++.|+++. ++++.+.++++|++||++++ ++++|++.
T Consensus         3 ~~~~~i~~l~~~~~~~v~tv~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vG~it   57 (140)
T d2nyca1           3 FLKIPIGDLNIITQDNMKSCQMTTPVI-DVIQMLTQGRVSSVPIIDEN-GYLINVYE   57 (140)
T ss_dssp             GGGSBGGGSSCCBCSSCCCBCTTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             cccCcHHHhCCccCCCCEEEcCcCcHH-HHHHHHHHcCCcEEEEEecC-CeEcceeh
Confidence            345778888 67789999999999997 99999999999999999764 67999985

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.60  E-value=3.5e-05  Score=57.58  Aligned_cols=49  Identities=16%  Similarity=0.281  Sum_probs=44.3

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+|+|+|+  .++.+++.++++. ++++.+.+++++++||.+++ ++++|+++
T Consensus         5 ~pV~~im~--~~~~~v~~~~t~~-~a~~~m~~~~~~~~~Vvd~~-~~~~Giit   53 (132)
T d2yzia1           5 APIKVYMT--KKLLGVKPSTSVQ-EASRLMMEFDVGSLVVINDD-GNVVGFFT   53 (132)
T ss_dssp             SBGGGTCB--CCCCEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             CcHHHHcC--CCCeEECCcCcHH-HHHHHHHHcCCcEEEEeccc-ceeeeeee
Confidence            47999998  4899999999997 99999999999999999764 78999986

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=1.5e-05  Score=58.82  Aligned_cols=52  Identities=27%  Similarity=0.500  Sum_probs=45.6

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +..+..++++|.|  ++.+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        63 ~~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~lpVvd~--~~lvGiit  114 (123)
T d1y5ha3          63 DPNTATAGELARD--SIYYVDANASIQ-EMLNVMEEHQVRRVPVISE--HRLVGIVT  114 (123)
T ss_dssp             CTTTSBHHHHHTT--CCCCEETTCCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             CcccceEEEEeec--cceeeeecchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEE
Confidence            4456788999985  778899999997 9999999999999999985  68999986

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.53  E-value=3.5e-05  Score=57.28  Aligned_cols=52  Identities=12%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      -.+.+|+++|++  +..+++.++++. ++.+.+.+++..++||.+++ +.++|++.
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lPVVD~~-g~lvGiIt  113 (127)
T d2ouxa2          62 DDDTLIADILNE--RVISVHVGDDQE-DVAQTIRDYDFLAVPVTDYD-DHLLGIVT  113 (127)
T ss_dssp             CTTSBHHHHSBS--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECTT-CBEEEEEE
T ss_pred             cccEEhhhhccC--CCccCCCCCCHH-HHHHHHHHhCCEEEEEEeCC-CEEEEEEE
Confidence            467899999985  566899999997 99999999999999999754 79999986

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.53  E-value=1.6e-05  Score=58.73  Aligned_cols=53  Identities=13%  Similarity=0.295  Sum_probs=39.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+..+.++|+++.++++++.+++++ ++.+.+.+++.+++||.+++ ++++|++.
T Consensus        59 ~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~m~~~~i~~lpVVd~~-~~lvGiiT  111 (120)
T d1jr1a4          59 HDRFLEEIMTKREDLVVAPAGITLK-EANEILQRSKKGKLPIVNEN-DELVAIIA  111 (120)
T ss_dssp             -------CCSBTTTSCCEETTCCHH-HHHHHTCSCC---CEEEETT-TEEEEEEC
T ss_pred             cCceeEEEEeeccCceEECCCCCHH-HHHHHHHHcCccEEEEEcCC-CEEEEEEE
Confidence            4678999999999999999999997 99999999999999999764 78999985

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.52  E-value=3.8e-05  Score=58.65  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=46.3

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+.+|+++|+|  ++.+++.++++. ++.+.+.++|++|+||.+++ ++++|++.
T Consensus        95 ~~~~~~v~~~m~~--~~~tv~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~lvGivt  147 (156)
T d2yzqa1          95 QLPNKPVAEIMTR--DVIVATPHMTVH-EVALKMAKYSIEQLPVIRGE-GDLIGLIR  147 (156)
T ss_dssp             --CCCBGGGTCBS--SCCCBCTTSBHH-HHHHHHHHHTCSEEEEEETT-TEEEEEEE
T ss_pred             cccCCEeehhccc--CceEECcccccH-HHHHHHHHcCeeEEEEEeCC-CEEEEEEE
Confidence            4678899999987  578899999997 99999999999999999865 78999986

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.52  E-value=2.9e-05  Score=57.95  Aligned_cols=46  Identities=24%  Similarity=0.271  Sum_probs=41.2

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|+++|+|  +..+++.++++. ++++.+.++|++++||.++   +.+|++.
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~-~a~~~m~~~~~~~l~V~d~---~lvg~~~   47 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLG-SAFKKINEGGIGRIIVANE---KIEGLLT   47 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHH-HHHHHTTGGGCCEEEEESS---SEEEEEE
T ss_pred             EeeEEeeC--CCeEECCCCcHH-HHHHHHHHhCCeEEEEEec---ceeceee
Confidence            68999997  788899999997 9999999999999999864   6899874

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=6.6e-05  Score=55.12  Aligned_cols=49  Identities=12%  Similarity=0.099  Sum_probs=43.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +|++.|++  ++.+++.+++++ ++++.+.+.+++.+||++++ ++++|++..
T Consensus         2 ~v~~~m~~--~~~~v~~~~tv~-ea~~~m~~~~~~~v~Vvd~~-~~~~Gii~~   50 (121)
T d1vr9a3           2 KVKKWVTQ--DFPMVEESATVR-ECLHRMRQYQTNECIVKDRE-GHFRGVVNK   50 (121)
T ss_dssp             BGGGGCBS--CSCEEETTCBHH-HHHHHHHHTTSSEEEEECTT-SBEEEEEEG
T ss_pred             CchhhhcC--CCeEECCCCCHH-HHHHhhhhcCcEEEEEEeCC-ceeEEEeeh
Confidence            68999995  888999999997 99999999999999999654 789999863

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.47  E-value=0.00013  Score=55.13  Aligned_cols=52  Identities=13%  Similarity=0.222  Sum_probs=46.2

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+++++++|.+  ++.+++.++++. ++.+.+.+++.+++||.+++ ++++|++.
T Consensus        66 ~~~~~v~~im~~--~~~~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~-g~l~Giit  117 (142)
T d1pvma4          66 PDEVPIRLVMRK--PIPKVKSDYDVK-DVAAYLSENGLERCAVVDDP-GRVVGIVT  117 (142)
T ss_dssp             GGGSBGGGTSBS--SCCEEETTCBHH-HHHHHHHHHTCSEEEEECTT-CCEEEEEE
T ss_pred             cccccccccccc--ccccccchhhHH-HHHHHHHHcCCcEEEEEecC-CEEEEEEE
Confidence            456789999984  778999999997 99999999999999999864 78999986

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.41  E-value=0.00011  Score=54.43  Aligned_cols=51  Identities=25%  Similarity=0.433  Sum_probs=45.1

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|.+  +..+++.+++++ ++.+.+.+.+.+++||.++  ++++|++.
T Consensus        67 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~~~GiIt  117 (127)
T d2rc3a1          67 VKDTQVKEIMTR--QVAYVDLNNTNE-DCMALITEMRVRHLPVLDD--GKVIGLLS  117 (127)
T ss_dssp             GGGSBGGGTSBC--SCCCBCTTCBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             ccceeEeeeccc--eeEEeccCccHH-HHHHHHHHCCCcEEEEEEC--CEEEEEEE
Confidence            346789999985  778899999997 9999999999999999974  78999985

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.40  E-value=8.5e-05  Score=54.98  Aligned_cols=50  Identities=8%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC-CCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D~IvGiv~  256 (258)
                      .+|+|+|++  +.++++.++++. |+++.+.+++++++||+++| .+.++|+++
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~-ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~   51 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIR-EVATELAKNRVGLAVLTARDNPKRPVAVVS   51 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHH-HHHHHHHHHTCSEEEEEETTEEEEEEEEEE
T ss_pred             CCHHHhccC--CCEEECCCCcHH-HHHHHHHHhCCCcEEEEEEcCCCEEEEEEe
Confidence            379999974  788999999997 99999999999999999754 466999985

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.36  E-value=7.3e-05  Score=55.60  Aligned_cols=52  Identities=15%  Similarity=0.306  Sum_probs=45.7

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++++|++  +..+++.++++. ++++.+.+++.+++||.+++ +.++|++.
T Consensus        71 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~i~~lpVvd~~-g~lvGiit  122 (135)
T d3ddja2          71 ISTTPIIDYMTP--NPVTVYNTSDEF-TAINIMVTRNFGSLPVVDIN-DKPVGIVT  122 (135)
T ss_dssp             HHTSBGGGTSEE--SCCCEETTSCHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             cccCCHHHHhCC--ccceEEeccccc-hhhhhhhhcceeEEEEEeCC-CEEEEEEE
Confidence            356799999975  777899999997 99999999999999999754 78999986

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=8.3e-05  Score=55.92  Aligned_cols=49  Identities=16%  Similarity=0.357  Sum_probs=42.2

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.++++|..  +.++++.++++. ++++.+.++|++++||++++ ++++|++.
T Consensus         4 ~~v~~~m~~--~p~~v~~~~~v~-~a~~~m~~~~~~~ipVvd~~-~~~vGiis   52 (145)
T d1o50a3           4 KDVCKLISL--KPTVVEEDTPIE-EIVDRILEDPVTRTVYVARD-NKLVGMIP   52 (145)
T ss_dssp             HHHTTSSCC--CCEEECTTCBHH-HHHHHHHHSTTCCEEEEEET-TEEEEEEE
T ss_pred             eEhHHhCCC--CCEEECCcCcHH-HHHHHHHHcCCceEEEeccC-cceeeeec
Confidence            456777874  558999999997 99999999999999999865 78999986

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.30  E-value=0.00026  Score=52.59  Aligned_cols=50  Identities=18%  Similarity=0.301  Sum_probs=44.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.+++++|.|  ++.+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        68 ~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~V~~~--~~~vGivt  117 (132)
T d2yzia1          68 YDIPVERIMTR--NLITANVNTPLG-EVLRKMAEHRIKHILIEEE--GKIVGIFT  117 (132)
T ss_dssp             TTSBGGGTCBC--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             cceeEeecccc--cccccCcchHHH-HHHHHHHHcCCCEEEEEEC--CEEEEEEE
Confidence            35789999986  678899999997 9999999999999999765  78999986

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.29  E-value=0.00013  Score=53.86  Aligned_cols=51  Identities=22%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+++++++|.+  ++.+++.++++. ++.+.+.+++.+++||.++ .++++|++.
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~~~lvGiit  115 (127)
T d2ef7a1          65 LETKAEEFMTA--SLITIREDSPIT-GALALMRQFNIRHLPVVDD-KGNLKGIIS  115 (127)
T ss_dssp             TTCBGGGTSEE--CCCCEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEE
T ss_pred             ccchhhhhhhh--hccccccccchh-HHHHHHHHcCceEEEEEeC-CCeEEEEEE
Confidence            35789999986  778899999997 9999999999999999965 479999986

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.29  E-value=0.00014  Score=53.09  Aligned_cols=52  Identities=23%  Similarity=0.287  Sum_probs=46.0

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.++.++++|.+  ++.+++.++++. ++++.+.+++..++||.++  ++++|+++
T Consensus        60 ~~~~~~v~~~m~~--~~~~v~~~~~l~-~a~~~m~~~~~~~l~V~~~--~~l~Givt  111 (120)
T d1pbja3          60 DLAEVKVWEVMER--DLVTISPRATIK-EAAEKMVKNVVWRLLVEED--DEIIGVIS  111 (120)
T ss_dssp             CTTTSBHHHHCBC--GGGEECTTSCHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             cccceeEeeeccc--ccccccchhHHH-HHHHHHHHcCCeEEEEEEC--CEEEEEEE
Confidence            4567899999975  678899999997 9999999999999999864  79999986

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=97.22  E-value=0.00014  Score=54.55  Aligned_cols=51  Identities=18%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      +.+++++++|++  ++.+++.++++. ++++.+.+++.+++||.++  ++++|++.
T Consensus        72 ~~~~~v~~im~~--~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~--~~lvGiit  122 (139)
T d2o16a3          72 AFETPLFEVMHT--DVTSVAPQAGLK-ESAIYMQKHKIGCLPVVAK--DVLVGIIT  122 (139)
T ss_dssp             -CCCBHHHHSCS--CEEEBCTTSBHH-HHHHHHHHTTCSCEEEEET--TEEEEEEC
T ss_pred             ccccchhHhhcc--ccccccccchHH-HHHHHHHHcCceEEEEEEC--CEEEEEEE
Confidence            567889999974  789999999997 9999999999999999985  78999985

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00028  Score=53.29  Aligned_cols=52  Identities=17%  Similarity=0.388  Sum_probs=46.0

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      -.+..++++|++  +.++++.++++. ++++.+.+++..++||.+++ ++++|+|.
T Consensus        62 ~~~~~v~~im~~--~~~~v~~~~~~~-~a~~~m~~~~~~~lPVVd~~-g~lvGiIt  113 (144)
T d2yvxa2          62 DPRTRVAEIMNP--KVVYVRTDTDQE-EVARLMADYDFTVLPVVDEE-GRLVGIVT  113 (144)
T ss_dssp             CTTCBSTTTSBS--SCCCEESSCCHH-HHHHHHHHSCCSEEEEECSS-CBEEEEEE
T ss_pred             ccccchHHhccc--CCccCCCCChHH-HHHHHHHHcCCCEEEEEeEC-CEEEEEEE
Confidence            456899999995  677899999997 99999999999999999864 78999986

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.10  E-value=0.00027  Score=51.73  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=40.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .++..+.++|.+  +..+++.++++. ++++.+.+++.+++||.++ .++++|+++
T Consensus        57 ~~~~~~~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvd~-~~~liGiit  108 (122)
T d2yzqa2          57 PDEEQLAMLVKR--DVPVVKENDTLK-KAAKLMLEYDYRRVVVVDS-KGKPVGILT  108 (122)
T ss_dssp             -------CCCBS--CCCEEETTSBHH-HHHHHHHHHTCSEEEEECT-TSCEEEEEE
T ss_pred             hcccchhhcccc--ceeecchhhHHH-HHHHHHHHcCcEEEEEEeC-CCEEEEEEE
Confidence            466789999986  567899999997 9999999999999999985 488999986

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.05  E-value=0.00019  Score=53.56  Aligned_cols=52  Identities=19%  Similarity=0.261  Sum_probs=45.9

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+++++|++  +..+++.++++. ++++.+.+++.+++||.+++ ++++|++.
T Consensus        70 ~~~~~v~~im~~--~~~~v~~~~~~~-~~~~~m~~~~~~~l~Vvd~~-~~~iGiIt  121 (141)
T d3ddja1          70 FYGKVVKDVMVT--NLVTIDELASVN-RAAAEMIVKRIGSLLILNKD-NTIRGIIT  121 (141)
T ss_dssp             HHTCBHHHHSBC--CCCBCCTTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEE
T ss_pred             ccCCCHHHHhCc--ccccccccchhh-HHHHHHHHcCCCEEEEEccC-CEEEEEEE
Confidence            356789999985  788899999997 99999999999999999764 78999985

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00032  Score=54.15  Aligned_cols=52  Identities=10%  Similarity=0.195  Sum_probs=45.7

Q ss_pred             ccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          200 ELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       200 ~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ...+..++++|+|  ++++++.++++. ++.+.+.+.++.++||.++  ++++|+|.
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~-~v~~~~~~~~~~~l~V~d~--g~lvGiIt  147 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPME-IVVDIFRKLGLRQCLVTHN--GRLLGIIT  147 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHH-HHHHHHHHHTCSEEEEEET--TEEEEEEE
T ss_pred             cccccchhhhccC--CCEEECCCCcHH-HHHHHHHhcCceEEEEEEC--CEEEEEEE
Confidence            3457789999997  578999999997 9999999999999999875  68999986

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.90  E-value=0.00038  Score=51.15  Aligned_cols=41  Identities=22%  Similarity=0.334  Sum_probs=36.3

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC-CCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE-PTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~-~D~IvGiv~  256 (258)
                      +.++++.++++. ++++.+.+++++++||.++. .+.++|++.
T Consensus         6 dpvtv~~~~tv~-~a~~~m~~~~~~~~pVvD~~~~~~lvGivt   47 (126)
T d1zfja4           6 DPFFLTPEHKVS-EAEELMQRYRISGVPIVETLANRKLVGIIT   47 (126)
T ss_dssp             SCCCBCSSSBHH-HHHHHHHHTTCSEEEEESCTTTCBEEEEEE
T ss_pred             CceEECCCCCHH-HHHHHHHHhCCCcEEEEeeccCCeEEEEeE
Confidence            567899999997 99999999999999999864 467999985

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.65  E-value=0.0011  Score=50.06  Aligned_cols=54  Identities=15%  Similarity=0.196  Sum_probs=45.1

Q ss_pred             cccccccccccccc----eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIA----ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~----~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.++.++|+.+.    +.++++.++++. ++++.+.+++..|+||.+++ +.++|++.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~~-~~lvGivT  124 (153)
T d2ooxe2          67 NLDLSVGEALLKRPANFDGVHTCRATDRLD-GIFDAIKHSRVHRLFVVDEN-LKLEGILS  124 (153)
T ss_dssp             GGGSBHHHHHHTSCCCSSCCCEECTTCBHH-HHHHHHHHSCCSEEEEECTT-CBEEEEEE
T ss_pred             ccccchhhheeeeecccCCCeEECCCCcHH-HHHHhhhhceeeEEEEEcCC-CEEEEEEE
Confidence            34678888887654    456899999997 99999999999999999754 78999986

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=96.46  E-value=0.002  Score=48.40  Aligned_cols=88  Identities=11%  Similarity=0.066  Sum_probs=60.4

Q ss_pred             cccHHHHHHHHHhhccccc----CCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCc
Q 025093          164 LFRRAELKTLVNLHGNEAG----KGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHS  239 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~----~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~S  239 (258)
                      .+|..++...+........    +...-..+....-..........++++|.+  ..++++.++++. ++.+.+.+.|..
T Consensus        59 ~is~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~tv~~~~~l~-~~~~~m~~~~v~  135 (160)
T d2d4za3          59 SIDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQ--SPFQLVEGTSLQ-KTHTLFSLLGLD  135 (160)
T ss_dssp             EEEHHHHHHHHHHHHHTTSSSCCCSCCBHHHHHHHHHHHTTCBCCTTSSCEEC--CSCCBCTTCBHH-HHHHHHHHHTCS
T ss_pred             cchHHHHHHHHhhccccccccchhhccccchhhhhhhhhcccccceeeecccC--CCEEEcCCCCHH-HHHHHHHHcCCe
Confidence            4577888777652211100    011112233344445566677778889987  457799999997 999999999999


Q ss_pred             eeeeeeCCCCcEEEEEE
Q 025093          240 RVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       240 R~PVy~~~~D~IvGiv~  256 (258)
                      |+||.++  ++++|+|.
T Consensus       136 ~l~V~d~--g~lvGiIt  150 (160)
T d2d4za3         136 RAYVTSM--GKLVGVVA  150 (160)
T ss_dssp             EEEEEET--TEEEEEEE
T ss_pred             EEEEEEC--CEEEEEEE
Confidence            9999874  79999986

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0016  Score=48.47  Aligned_cols=82  Identities=22%  Similarity=0.329  Sum_probs=56.8

Q ss_pred             cccHHHHHHHHHhhcccccCCCCCCHhHHHHHHhhhccccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeee
Q 025093          164 LFRRAELKTLVNLHGNEAGKGGELTHDETTIIAGALELTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPV  243 (258)
Q Consensus       164 ~~s~eEl~~lv~~~~~e~~~~g~l~~~E~~mi~~i~~~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PV  243 (258)
                      .+|..++........  .   +... .+....+..-.+...+++++|.+   .++++.++++. ++++.+.+++.+++||
T Consensus        50 iis~~Dl~~~~~~~~--~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~l~-~a~~~m~~~~i~~lpV  119 (145)
T d1o50a3          50 MIPVMHLLKVSGFHF--F---GFIP-KEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLE-EALKLMIDNNIQEMPV  119 (145)
T ss_dssp             EEEHHHHHHHHHHHH--H---CCCC--------CCCCCSSCBHHHHCBC---CCCBCTTSBHH-HHHHHHHHHTCSEEEE
T ss_pred             eeccchhhhhhhccc--c---cccc-hhHHHHhhhhhccccCHHHHcCC---CEEEcCCCCHH-HHHHHHHHcCceEEEE
Confidence            568888877664211  0   1111 22233345556788889999853   46799999997 9999999999999999


Q ss_pred             eeCCCCcEEEEEE
Q 025093          244 YYEEPTNIIGLIL  256 (258)
Q Consensus       244 y~~~~D~IvGiv~  256 (258)
                      .++ .++++|++.
T Consensus       120 Vd~-~g~i~Gvit  131 (145)
T d1o50a3         120 VDE-KGEIVGDLN  131 (145)
T ss_dssp             ECT-TSCEEEEEE
T ss_pred             EeC-CCeEEEEEE
Confidence            975 478999986

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=96.34  E-value=0.0022  Score=46.44  Aligned_cols=51  Identities=18%  Similarity=0.297  Sum_probs=44.0

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.++.++|+.  +..+++.++++. ++++.+.+.+.+++||.+++ +.++|++.
T Consensus        58 ~~~~v~~~~~~--~~~~v~~~~~l~-~~~~~~~~~~~~~lpVvde~-g~~~Gvit  108 (121)
T d1vr9a3          58 LDSSVFNKVSL--PDFFVHEEDNIT-HALLLFLEHQEPYLPVVDEE-MRLKGAVS  108 (121)
T ss_dssp             TTSBSGGGCBC--TTCCEETTSBHH-HHHHHHHHCCCSEEEEECTT-CBEEEEEE
T ss_pred             ccccccccccC--ccEEECCCCCHH-HHHHHHHhcCceeeeeECCC-CeEEEEEE
Confidence            35689999985  456789999997 99999999999999999874 77999986

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.32  E-value=0.003  Score=46.02  Aligned_cols=52  Identities=17%  Similarity=0.279  Sum_probs=41.3

Q ss_pred             ccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          202 TEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       202 ~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+....+.|.++ +.++++.++++. ++.+.+.+++.+++||.++ .++++|+|.
T Consensus        57 ~~~~~~~~~~~~-~~~~~~~~~~l~-~a~~~m~~~~~~~lpVVd~-~g~lvGiiT  108 (126)
T d1zfja4          57 YNAPISEHMTSE-HLVTAAVGTDLE-TAERILHEHRIEKLPLVDN-SGRLSGLIT  108 (126)
T ss_dssp             SSSBTTTSCCCS-CCCCEETTCCHH-HHHHHHHHTTCSEEEEECT-TSBEEEEEE
T ss_pred             cCCceeeeeecc-ceeecCCCCCHH-HHHHHHHhcCCcEEEEEcC-CCeEEEEEE
Confidence            344555566554 556788999997 9999999999999999965 379999985

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=96.26  E-value=0.0021  Score=47.23  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=41.6

Q ss_pred             cccccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          201 LTEKTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       201 ~~~~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..+.+|+++|.+  ++..++.++++. ++++.+.+++  .+||.+++ +.++|+|.
T Consensus        71 ~~~~~v~~~m~~--~~~~v~~~~~l~-~~~~~~~~~~--~l~Vvd~~-~~~~Givt  120 (132)
T d1yava3          71 LDQITVEEVMLT--DIPRLHINDPIM-KGFGMVINNG--FVCVENDE-QVFEGIFT  120 (132)
T ss_dssp             TTTSBHHHHSBC--SCCEEETTSBHH-HHHHHTTTCS--EEEEECTT-CBEEEEEE
T ss_pred             cccccccccccc--cccccccchhHH-HHHHHHHhCC--EEEEEccC-CEEEEEEE
Confidence            456799999975  778999999997 9999987754  59999764 88999985

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.0012  Score=49.94  Aligned_cols=50  Identities=18%  Similarity=0.187  Sum_probs=42.9

Q ss_pred             ccccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          204 KTASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       204 ~~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      ..++++|++  +.++++.++++. ++++.+.++|..|+||.+++.++++|++.
T Consensus        96 ~~~~~~~~~--~~~~v~~~~~l~-~v~~~m~~~~~~~v~Vvd~~~g~~~GivT  145 (159)
T d2v8qe2          96 EVYLQDSFK--PLVCISPNASLF-DAVSSLIRNKIHRLPVIDPESGNTLYILT  145 (159)
T ss_dssp             HHHSSSSCC--CCCCBCTTSBHH-HHHHHHHHHTCSCEEEECTTTCCEEEEEC
T ss_pred             ceeeeeecc--ceEEECCCCcHH-HHHHHHHHhCCeEEEEEECCCCeEEEEEe
Confidence            345677775  678899999997 99999999999999999877788999985

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.17  E-value=0.0024  Score=46.82  Aligned_cols=48  Identities=27%  Similarity=0.304  Sum_probs=41.6

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcC-----CceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~-----~SR~PVy~~~~D~IvGiv~  256 (258)
                      ||..+|++  ++++++.+++++ ++++.+++++     .+.+||.+++ ++++|++.
T Consensus         2 taG~iM~~--d~i~v~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~   54 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVR-SAMYVLKNQADMAETIYYVYVVDQE-NHLVGVIS   54 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHH-HHHHHHHHHCSSCSCCSEEEEECTT-CBEEEEEE
T ss_pred             ChhHhCCC--CcEEECCCCcHH-HHHHHhHhhcccccceeeeEEEecC-CeEEEEEE
Confidence            67889986  889999999997 9999998885     5789999764 78999986

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.16  E-value=0.0048  Score=44.93  Aligned_cols=41  Identities=7%  Similarity=0.135  Sum_probs=35.8

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEEe
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLILV  257 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~~  257 (258)
                      +...+..++++. ++++.+.+++.+++||.+++ ++++|+++.
T Consensus        75 ~~~~v~~~~~~~-~a~~~m~~~~i~~lpVvd~~-g~l~Giit~  115 (131)
T d2riha1          75 SPITVLDTDPVH-VAAEKMRRHNIRHVVVVNKN-GELVGVLSI  115 (131)
T ss_dssp             CCCEEETTSBHH-HHHHHHHHHTCSEEEEECTT-SCEEEEEEH
T ss_pred             cceeEeeecchH-HHHHHHHHCCeEEEEEEcCC-CeEEEEEEH
Confidence            456788999997 99999999999999999754 789999873

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.00059  Score=51.45  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=40.9

Q ss_pred             cccccccccceEEEEeCCCCccHHHHHHHHHcC-----CceeeeeeCCCCcEEEEEE
Q 025093          205 TASDAMTPIAETFAIDINAKLDKELMNLILEKG-----HSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       205 ~v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~-----~SR~PVy~~~~D~IvGiv~  256 (258)
                      +|.++|+|  ++++++.++++. ++++.+++++     .+.+||.+++ +.++|++.
T Consensus         2 taG~iM~~--~~itv~~~~tv~-ea~~~m~~~~~~~~~~~~~~Vvd~~-~~l~G~v~   54 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVE-EVLRFLRRAAPDAETIYYIYVVDEK-GRLKGVLS   54 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHH-HHHHHSSSSCTTSSCSSBCEEBCTT-CBBCCBCB
T ss_pred             CcccccCC--CCEEECCCCcHH-HHHHHHHHhcccccceeeeEEecCC-CCEecccc
Confidence            68899997  899999999997 9999998886     4678998764 78999875

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0053  Score=45.55  Aligned_cols=41  Identities=17%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+.++++.++++. ++++.+.+++..++||.++ .++++|+|.
T Consensus        92 ~~~~~v~~~~~l~-~~~~~m~~~~~~~l~Vvd~-~g~l~GiVt  132 (145)
T d2v8qe1          92 EGVLKCYLHETLE-AIINRLVEAEVHRLVVVDE-HDVVKGIVS  132 (145)
T ss_dssp             CSCCEECTTSBHH-HHHHHHHHHTCSEEEEECT-TSBEEEEEE
T ss_pred             CCCeEECCCCcHH-HHHHHHHHcCceEEEEEcc-CCEEEEEEE
Confidence            3566799999997 9999999999999999964 478999986

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.59  E-value=0.00032  Score=51.28  Aligned_cols=41  Identities=10%  Similarity=0.352  Sum_probs=13.7

Q ss_pred             eEEEEeCCCCccHHHHHHHHHcCCceeeeeeCC--CCcEEEEEE
Q 025093          215 ETFAIDINAKLDKELMNLILEKGHSRVPVYYEE--PTNIIGLIL  256 (258)
Q Consensus       215 ~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~--~D~IvGiv~  256 (258)
                      +.++++.++++. ++.+.+.+++++++||.+++  .++++|++.
T Consensus         5 ~pvtv~~~~tl~-da~~~m~~~~i~~~pVvd~~~~~~~lvGivT   47 (120)
T d1jr1a4           5 DPVVLSPKDRVR-DVFEAKARHGFCGIPITDTGRMGSRLVGIIS   47 (120)
T ss_dssp             TTCC----CCCC---CCBC---------------CTTCCC----
T ss_pred             CCEEECCcCCHH-HHHHHHHHhCCCeEEEeeccccCCeEeeeee
Confidence            346899999998 99999999999999999753  467999985

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.86  E-value=0.0097  Score=45.54  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=38.8

Q ss_pred             ccccccccceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCC----CcEEEEEE
Q 025093          206 ASDAMTPIAETFAIDINAKLDKELMNLILEKGHSRVPVYYEEP----TNIIGLIL  256 (258)
Q Consensus       206 v~eiM~PR~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~----D~IvGiv~  256 (258)
                      +.++|.  .+.++++.++++. ++.+.+.++++.|+||.+++.    ..++|++.
T Consensus       109 ~~~~~~--~~~i~v~~~~sl~-~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT  160 (179)
T d2ooxe1         109 KIGAIP--PETIYVHPMHSLM-DACLAMSKSRARRIPLIDVDGETGSEMIVSVLT  160 (179)
T ss_dssp             HTTCSC--SSCCCBCTTSBHH-HHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEE
T ss_pred             eeeecc--cCceEECCCCcHH-HHHHHhhhcCceEEEEEecCCCcCCCcEEEEEe
Confidence            344554  4678999999997 999999999999999997542    25999984

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.015  Score=42.66  Aligned_cols=41  Identities=20%  Similarity=0.284  Sum_probs=34.8

Q ss_pred             ceEEEEeCCCCccHHHHHHHHHcCCceeeeeeCCCCcEEEEEE
Q 025093          214 AETFAIDINAKLDKELMNLILEKGHSRVPVYYEEPTNIIGLIL  256 (258)
Q Consensus       214 ~~v~~l~~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IvGiv~  256 (258)
                      .+...++.++++. ++++.+.+++++++||.+++ ++++|+|.
T Consensus        89 ~~~~~v~~~~~l~-~~~~~~~~~~~~~l~VVd~~-~~l~GiIt  129 (140)
T d2nyca1          89 EGVYTCTKNDKLS-TIMDNIRKARVHRFFVVDDV-GRLVGVLT  129 (140)
T ss_dssp             ---CEECTTSBHH-HHHHHHHHHTCSEEEEECTT-SBEEEEEE
T ss_pred             cccEEECCCCcHH-HHHHHHHhcCeeEEEEEeCC-CeEEEEEE
Confidence            4567899999997 99999999999999999764 88999986